Citrus Sinensis ID: 035308

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREVSVERRTDS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccHHHEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEccccc
Coil and Loop (DISEMBL)
MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSlhmyfappgmlvdipstakaapdslrEVSVERRTDS
Flexible Loop (DISEMBL)
MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTakaapdslrevsverrtds
Low Complexity Region (SEG)
MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREVSVERRTDS
Disordered region (IsUnstruct)
**MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDI**********************
Disordered Region (DISOPRED)
*AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVD****************V******
Disordered Region (DISEMBL)
MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPST*******************
Disordered Region (DISPRO)
*AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAK****SLREVS*E*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREVSVERRTDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q8LGE9	340	CMP-sialic acid transport	yes	no	1.0	0.2	0.705	1e-22

>sp|Q8LGE9|CSTR1_ARATH CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 58/68 (85%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 60
           MAMLLTMV S+YLF+FKPTLQLFLGI+IC+MSLHMYFAPP  LVD+P T +A   +L++V
Sbjct: 273 MAMLLTMVASIYLFSFKPTLQLFLGIVICIMSLHMYFAPPHTLVDLPVTNEAHAKTLKQV 332

Query: 61  SVERRTDS 68
            VE +TDS
Sbjct: 333 VVEEKTDS 340

Essential protein. Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
255583816	335	cmp-sialic acid transporter, putative [R	1.0	0.202	0.867	1e-26
224053803	335	predicted protein [Populus trichocarpa]	1.0	0.202	0.808	6e-26
224075072	335	predicted protein [Populus trichocarpa]	1.0	0.202	0.808	9e-26
356573211	335	PREDICTED: LOW QUALITY PROTEIN: probable	1.0	0.202	0.764	4e-22
147772007	392	hypothetical protein VITISV_039397 [Viti	0.941	0.163	0.764	6e-22
225454456	331	PREDICTED: CMP-sialic acid transporter [	0.941	0.193	0.764	6e-22
297805474	340	nucleotide-sugar transporter family prot	1.0	0.2	0.720	2e-21
449499467	337	PREDICTED: CMP-sialic acid transporter 1	1.0	0.201	0.757	4e-21
18422134	340	Nucleotide-sugar transporter family prot	1.0	0.2	0.705	5e-21
356506046	335	PREDICTED: probable UDP-sugar transporte	1.0	0.202	0.735	5e-21

>gi|255583816|ref|XP_002532660.1| cmp-sialic acid transporter, putative [Ricinus communis] gi|223527620|gb|EEF29733.1| cmp-sialic acid transporter, putative [Ricinus communis]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/68 (86%), Positives = 63/68 (92%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 60
           MAMLLTMVLSV+LFNF PTLQLFLGIIICMMSLHMYFAPPGMLVD+PS  KA P+SL +V
Sbjct: 268 MAMLLTMVLSVFLFNFSPTLQLFLGIIICMMSLHMYFAPPGMLVDLPSMGKADPESLIDV 327

Query: 61  SVERRTDS 68
           SVERRTDS
Sbjct: 328 SVERRTDS 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053803|ref|XP_002297987.1| predicted protein [Populus trichocarpa] gi|222845245|gb|EEE82792.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/68 (80%), Positives = 63/68 (92%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 60
           MAMLLTMV SVYLF+FKPTLQLF GIIICMMSLHMYFAPP ML+D+P+  +AAP+SL+EV
Sbjct: 268 MAMLLTMVWSVYLFSFKPTLQLFSGIIICMMSLHMYFAPPNMLLDLPTQVRAAPESLKEV 327

Query: 61  SVERRTDS 68
           +VERRTDS
Sbjct: 328 TVERRTDS 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075072|ref|XP_002304546.1| predicted protein [Populus trichocarpa] gi|222841978|gb|EEE79525.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/68 (80%), Positives = 62/68 (91%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 60
           +AMLLTMVLSVYLFN KPTLQL LG IICMMSLHMYFAPP MLVD+P+  +AAP+SL+EV
Sbjct: 268 LAMLLTMVLSVYLFNLKPTLQLLLGTIICMMSLHMYFAPPNMLVDLPTQVRAAPESLKEV 327

Query: 61  SVERRTDS 68
           +VERRTDS
Sbjct: 328 AVERRTDS 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573211|ref|XP_003554757.1| PREDICTED: LOW QUALITY PROTEIN: probable UDP-sugar transporter protein SLC35A4-like [Glycine max]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 59/68 (86%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 60
           MAMLLTM+LS++LFNFKPTLQLFLGIIICMMSLHMYFAPP ML+D+P T K   + L EV
Sbjct: 268 MAMLLTMILSLFLFNFKPTLQLFLGIIICMMSLHMYFAPPNMLLDMPXTVKPDEEKLIEV 327

Query: 61  SVERRTDS 68
           SV+RRT S
Sbjct: 328 SVDRRTLS 335

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772007|emb|CAN60247.1| hypothetical protein VITISV_039397 [Vitis vinifera]

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 60/68 (88%), Gaps = 4/68 (5%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 60
           MAMLLTMVLSV+LFNFKPTLQLFLGI+ICMMSLHMYFAPP MLVD+P T K+AP+S    
Sbjct: 329 MAMLLTMVLSVFLFNFKPTLQLFLGIVICMMSLHMYFAPPTMLVDLPLTVKSAPES---- 384

Query: 61  SVERRTDS 68
            ++RRT+S
Sbjct: 385 HIDRRTNS 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454456|ref|XP_002280548.1| PREDICTED: CMP-sialic acid transporter [Vitis vinifera] gi|297745398|emb|CBI40478.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 60/68 (88%), Gaps = 4/68 (5%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 60
           MAMLLTMVLSV+LFNFKPTLQLFLGI+ICMMSLHMYFAPP MLVD+P T K+AP+S    
Sbjct: 268 MAMLLTMVLSVFLFNFKPTLQLFLGIVICMMSLHMYFAPPTMLVDLPLTVKSAPES---- 323

Query: 61  SVERRTDS 68
            ++RRT+S
Sbjct: 324 HIDRRTNS 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805474|ref|XP_002870621.1| nucleotide-sugar transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297316457|gb|EFH46880.1| nucleotide-sugar transporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 58/68 (85%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 60
           MAMLLTMV S+YLF+FKPTLQLFLGI+IC+MSLHMYFAPP  LVD+P T +A P  L++V
Sbjct: 273 MAMLLTMVASIYLFSFKPTLQLFLGIVICIMSLHMYFAPPHTLVDLPVTNEAHPKILKQV 332

Query: 61  SVERRTDS 68
            VE +TDS
Sbjct: 333 VVEEKTDS 340

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499467|ref|XP_004160825.1| PREDICTED: CMP-sialic acid transporter 1-like [Cucumis sativus]

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 58/70 (82%), Gaps = 2/70 (2%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPD--SLR 58
           MAMLLT +LSVYLFNFKPTLQLFLGII+CMMSLHMYFAPP MLVD+P     + D  SL 
Sbjct: 268 MAMLLTTILSVYLFNFKPTLQLFLGIIVCMMSLHMYFAPPQMLVDLPPPVVKSQDLESLI 327

Query: 59  EVSVERRTDS 68
           EVS +RRTDS
Sbjct: 328 EVSSDRRTDS 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422134|ref|NP_568596.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gi|79329489|ref|NP_001031992.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gi|75156053|sp|Q8LGE9.1|CSTR1_ARATH RecName: Full=CMP-sialic acid transporter 1; Short=CMP-SA-Tr 1; Short=CMP-Sia-Tr 1 gi|21536568|gb|AAM60900.1| CMP-sialic acid transporter-like protein [Arabidopsis thaliana] gi|28393785|gb|AAO42302.1| putative CMP-sialic acid transporter [Arabidopsis thaliana] gi|28973255|gb|AAO63952.1| putative CMP-sialic acid transporter [Arabidopsis thaliana] gi|332007339|gb|AED94722.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gi|332007340|gb|AED94723.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 58/68 (85%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 60
           MAMLLTMV S+YLF+FKPTLQLFLGI+IC+MSLHMYFAPP  LVD+P T +A   +L++V
Sbjct: 273 MAMLLTMVASIYLFSFKPTLQLFLGIVICIMSLHMYFAPPHTLVDLPVTNEAHAKTLKQV 332

Query: 61  SVERRTDS 68
            VE +TDS
Sbjct: 333 VVEEKTDS 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506046|ref|XP_003521799.1| PREDICTED: probable UDP-sugar transporter protein SLC35A4-like [Glycine max]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 58/68 (85%)

Query: 1   MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 60
           MAMLLTM+LS++LFNFKPTLQLFLGIIICMMSLHMYFAPP +L+D P T K   + L EV
Sbjct: 268 MAMLLTMILSLFLFNFKPTLQLFLGIIICMMSLHMYFAPPNLLLDKPLTVKLDEEKLIEV 327

Query: 61  SVERRTDS 68
           S++RRT S
Sbjct: 328 SIDRRTLS 335

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
TAIR|locus:2152955	340	AT5G41760 [Arabidopsis thalian	1.0	0.2	0.705	3e-21

TAIR|locus:2152955 AT5G41760 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 48/68 (70%), Positives = 58/68 (85%)

Query:     1 MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLREV 60
             MAMLLTMV S+YLF+FKPTLQLFLGI+IC+MSLHMYFAPP  LVD+P T +A   +L++V
Sbjct:   273 MAMLLTMVASIYLFSFKPTLQLFLGIVICIMSLHMYFAPPHTLVDLPVTNEAHAKTLKQV 332

Query:    61 SVERRTDS 68
              VE +TDS
Sbjct:   333 VVEEKTDS 340


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.139   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       68        68   0.00091  102 3  11 22  0.49    27
                                                     29  0.38    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  412 (44 KB)
  Total size of DFA:  71 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.99u 0.14s 9.13t   Elapsed:  00:00:01
  Total cpu time:  8.99u 0.14s 9.13t   Elapsed:  00:00:01
  Start:  Fri May 10 07:26:47 2013   End:  Fri May 10 07:26:48 2013

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS;IDA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LGE9	CSTR1_ARATH	No assigned EC number	0.7058	1.0	0.2	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.13
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	97.51
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.23
PLN00411	358	nodulin MtN21 family protein; Provisional	95.55
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	95.44
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	94.41
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	94.02
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	92.79
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	92.73
PRK10532	293	threonine and homoserine efflux system; Provisiona	91.96
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	89.22
KOG1580	337	consensus UDP-galactose transporter related protei	88.87
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	87.91
PRK09541	110	emrE multidrug efflux protein; Reviewed	87.12
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	87.06
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	85.07
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	84.79
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	84.32
PRK11431	105	multidrug efflux system protein; Provisional	83.14
PRK11689	295	aromatic amino acid exporter; Provisional	82.05
PRK11272	292	putative DMT superfamily transporter inner membran	81.95

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.13  E-value=3.6e-11  Score=91.98  Aligned_cols=51  Identities=29%  Similarity=0.486  Sum_probs=42.7

Q ss_pred             CceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCCCccCCCCCCCC
Q 035308            1 MAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKA   52 (68)
Q Consensus         1 ~AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~~~~~~~~~~~~   52 (68)
                      +||++++++|+++|||+||++|++|+.+|+.|+++|+.+|... +.++..+.
T Consensus       285 ~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~-~~~~~~~~  335 (345)
T KOG2234|consen  285 VAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD-AQKNYNPL  335 (345)
T ss_pred             HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc-ccccCCCC
Confidence            4899999999999999999999999999999999999655544 44444333

>TIGR00803 nst UDP-galactose transporter

Probab=97.51  E-value=3.7e-05  Score=52.54  Aligned_cols=35  Identities=29%  Similarity=0.619  Sum_probs=33.1

Q ss_pred             ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhc
Q 035308            2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMY   36 (68)
Q Consensus         2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY   36 (68)
                      .+++|+++|+++||.+++.++++|+.+|..++++|
T Consensus       188 ~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       188 SIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            46789999999999999999999999999999998

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.23  E-value=8.3e-05  Score=53.37  Aligned_cols=29  Identities=45%  Similarity=0.835  Sum_probs=27.0

Q ss_pred             CceehhhHHHHHHhcccchhhhHhHhHHH
Q 035308            1 MAMLLTMVLSVYLFNFKPTLQLFLGIIIC   29 (68)
Q Consensus         1 ~AIils~v~Sv~lFgf~ltl~F~lGa~lV   29 (68)
                      ++|++++++|+++||++++..|++|+.+|
T Consensus       216 ~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  216 VSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            47899999999999999999999999875

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=95.55  E-value=0.014  Score=44.10  Aligned_cols=56  Identities=11%  Similarity=0.050  Sum_probs=42.3

Q ss_pred             ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCCCccCCCCCCCCCCCCcce
Q 035308            4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGMLVDIPSTAKAAPDSLRE   59 (68)
Q Consensus         4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~~~~~~~~~~~~~~~kl~~   59 (68)
                      +.+++.+++++|.++++.-++|..+++.++++-..++.+-.+.+...+.++++++.
T Consensus       294 V~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~  349 (358)
T PLN00411        294 LIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFSGKEKTPL  349 (358)
T ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCccccccchh
Confidence            56888999999999999999999999999999775544433333343346676654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=95.44  E-value=0.011  Score=42.39  Aligned_cols=40  Identities=20%  Similarity=0.430  Sum_probs=35.8

Q ss_pred             ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCCCc
Q 035308            4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPGML   43 (68)
Q Consensus         4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~~~   43 (68)
                      ++|.++|+++||.+++..-+.|+.+|..++.+|..++++.
T Consensus       263 ~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  263 FLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            4678999999999999999999999999999999877653

; GO: 0055085 transmembrane transport

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=94.41  E-value=0.047  Score=41.52  Aligned_cols=39  Identities=10%  Similarity=0.413  Sum_probs=33.7

Q ss_pred             eehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCCC
Q 035308            3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPPG   41 (68)
Q Consensus         3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~~   41 (68)
                      .+.+.+.++++|+.++++.+.+|..++++.+.+|..-++
T Consensus       270 d~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  270 DFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             hHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            445678899999999999999999999999999995333

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=94.02  E-value=0.024  Score=40.23  Aligned_cols=37  Identities=22%  Similarity=0.375  Sum_probs=32.6

Q ss_pred             ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCC
Q 035308            4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPP   40 (68)
Q Consensus         4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~   40 (68)
                      +++++.|+++||.+++..-.+|..+++.++++|+.-|
T Consensus       259 v~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k  295 (302)
T TIGR00817       259 VVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK  295 (302)
T ss_pred             hheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            3556788999999999999999999999999999644

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=92.79  E-value=0.1  Score=38.65  Aligned_cols=35  Identities=23%  Similarity=0.478  Sum_probs=32.3

Q ss_pred             ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccC
Q 035308            4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFA   38 (68)
Q Consensus         4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~   38 (68)
                      +++.+.|+++||-+++..-.+|..+++.++++|+.
T Consensus       314 V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~  348 (350)
T PTZ00343        314 VVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL  348 (350)
T ss_pred             HHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence            46778899999999999999999999999999985

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=92.73  E-value=0.11  Score=32.71  Aligned_cols=34  Identities=26%  Similarity=0.516  Sum_probs=31.5

Q ss_pred             ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308            4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF   37 (68)
Q Consensus         4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~   37 (68)
                      +++.+.|+++||-+++..-.+|..+.++..++|+
T Consensus       119 ~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen  119 ILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            4678899999999999999999999999999996

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=91.96  E-value=0.27  Score=35.04  Aligned_cols=37  Identities=14%  Similarity=-0.004  Sum_probs=33.0

Q ss_pred             ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCC
Q 035308            4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPP   40 (68)
Q Consensus         4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~   40 (68)
                      +.+++.++.+||.+++..-.+|..++++++..+..+.
T Consensus       247 v~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        247 ALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            5788899999999999999999999999998887543

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=89.22  E-value=0.53  Score=27.76  Aligned_cols=34  Identities=15%  Similarity=0.443  Sum_probs=30.2

Q ss_pred             eehhhHHHHHHhcccchhhhHhHhHHHhhhhhhc
Q 035308            3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMY   36 (68)
Q Consensus         3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY   36 (68)
                      .+++.+.++++++.+++..-.+|..++++++++-
T Consensus        91 pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   91 PVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999987763

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=88.87  E-value=0.91  Score=35.16  Aligned_cols=48  Identities=23%  Similarity=0.303  Sum_probs=36.2

Q ss_pred             hhhHHHHHHhcccchhhhHhHhHHHhhhhh---hcc--CCCCCccCCCCCCCC
Q 035308            5 LTMVLSVYLFNFKPTLQLFLGIIICMMSLH---MYF--APPGMLVDIPSTAKA   52 (68)
Q Consensus         5 ls~v~Sv~lFgf~ltl~F~lGa~lV~~Si~---LY~--~p~~~~~~~~~~~~~   52 (68)
                      .|.++|+.+||-+++-.-++|+++|..++.   .||  .|...+++++.+.+.
T Consensus       280 FTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~a~~t~akkp~~~~~~  332 (337)
T KOG1580|consen  280 FTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKKAPMTAAKKPLAATEP  332 (337)
T ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCcCccccccCCCcCCCc
Confidence            467899999999999999999999988865   566  455555555444433

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=87.91  E-value=0.78  Score=30.41  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=31.5

Q ss_pred             ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308            2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF   37 (68)
Q Consensus         2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~   37 (68)
                      .++.++++++++||-++++.=.+|..+.++++.+-.
T Consensus        67 G~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         67 GILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            356789999999999999999999999999976644

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=87.12  E-value=0.76  Score=29.84  Aligned_cols=36  Identities=17%  Similarity=0.294  Sum_probs=31.8

Q ss_pred             ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308            2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF   37 (68)
Q Consensus         2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~   37 (68)
                      .++.+++.++++||-++++.=.+|..+.++++.+-.
T Consensus        67 G~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         67 GIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            356789999999999999999999999999977754

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=87.06  E-value=0.58  Score=29.95  Aligned_cols=35  Identities=9%  Similarity=0.189  Sum_probs=30.5

Q ss_pred             ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhc
Q 035308            2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMY   36 (68)
Q Consensus         2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY   36 (68)
                      ..+.++++|+++||.+++..=.+|..+.++.+.+-
T Consensus        73 ~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i  107 (111)
T PRK15051         73 NFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL  107 (111)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999998887653

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=85.07  E-value=1.5  Score=29.03  Aligned_cols=36  Identities=22%  Similarity=0.344  Sum_probs=29.4

Q ss_pred             hhhHHHHH--HhcccchhhhHhHhHHHhhhhhhccCCC
Q 035308            5 LTMVLSVY--LFNFKPTLQLFLGIIICMMSLHMYFAPP   40 (68)
Q Consensus         5 ls~v~Sv~--lFgf~ltl~F~lGa~lV~~Si~LY~~p~   40 (68)
                      +.++++++  +||.++++.-.+|..++++.+++-..++
T Consensus        87 ~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         87 LVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            45556664  7999999999999999999999966533

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=84.79  E-value=0.97  Score=31.86  Aligned_cols=33  Identities=21%  Similarity=0.467  Sum_probs=29.8

Q ss_pred             eehhhHHHHHHhcccchhhhHhHhHHHhhhhhh
Q 035308            3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHM   35 (68)
Q Consensus         3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~L   35 (68)
                      .+.+.+.++++||.+++..-++|..++++++++
T Consensus       248 pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       248 IVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            467889999999999999999999999998875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=84.32  E-value=1.2  Score=31.76  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=31.3

Q ss_pred             ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCC
Q 035308            4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPP   40 (68)
Q Consensus         4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~   40 (68)
                      +.+++.+++++|.+++....+|+.++++++++-..|+
T Consensus       253 v~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        253 VVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            4677888999999999999999999999988754443

>PRK11431 multidrug efflux system protein; Provisional

Probab=83.14  E-value=1.2  Score=28.81  Aligned_cols=34  Identities=6%  Similarity=0.095  Sum_probs=29.8

Q ss_pred             ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhh
Q 035308            2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHM   35 (68)
Q Consensus         2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~L   35 (68)
                      .++.++++++++||-++++.=.+|..+.++++.+
T Consensus        66 G~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~   99 (105)
T PRK11431         66 GAVGAAITGIVLLGESASPARLLSLALIVAGIIG   99 (105)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Confidence            3567899999999999999999999999888654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=82.05  E-value=1.6  Score=31.08  Aligned_cols=34  Identities=12%  Similarity=0.333  Sum_probs=29.9

Q ss_pred             ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhcc
Q 035308            4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYF   37 (68)
Q Consensus         4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~   37 (68)
                      +++.+.++.++|.+++....+|..+++.++++--
T Consensus       253 v~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        253 VLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence            4678889999999999999999999999987643

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=81.95  E-value=1.2  Score=31.63  Aligned_cols=35  Identities=9%  Similarity=0.063  Sum_probs=31.2

Q ss_pred             ehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccC
Q 035308            4 LLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFA   38 (68)
Q Consensus         4 ils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~   38 (68)
                      +.+++.+++++|.+++..-.+|+.+++.++++-..
T Consensus       251 i~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        251 VVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999888664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	95.98
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	93.71

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=95.98  E-value=0.0018  Score=42.39  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=27.7

Q ss_pred             eehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCCC
Q 035308            3 MLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPP   40 (68)
Q Consensus         3 Iils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p~   40 (68)
                      .++++++++++||-+++..-.+|+.++++++++.....
T Consensus        68 pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           68 IVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            56789999999999999999999999999999887543

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=93.71  E-value=0.05  Score=33.61  Aligned_cols=38  Identities=16%  Similarity=0.256  Sum_probs=33.5

Q ss_pred             ceehhhHHHHHHhcccchhhhHhHhHHHhhhhhhccCC
Q 035308            2 AMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAP   39 (68)
Q Consensus         2 AIils~v~Sv~lFgf~ltl~F~lGa~lV~~Si~LY~~p   39 (68)
                      ..++++++++++||.+++..=.+|+.+++..+.+....
T Consensus        67 ~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           67 GIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            35678999999999999999999999999998887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00