Citrus Sinensis ID: 035377

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW
Secondary Structure (PSIPRED)
ccEEEEccccccccccccHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHcccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHccccEEccccccc
Coil and Loop (DISEMBL)
mklfdahchlqdprifhkapqliatTVNSGVLHFAVNGVSEEDWNLVKdmserhpsvipcfgvhpw
Flexible Loop (DISEMBL)
MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSerhpsvipcfgvhpw
Low Complexity Region (SEG)
MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW
Disordered region (IsUnstruct)
***FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGV***
Disordered Region (DISOPRED)
MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW
Disordered Region (DISEMBL)
MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW
Disordered Region (DISPRO)
*KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	66	2.2.26 [Sep-21-2011]
P41890	335	Cut9-interacting protein	yes	no	0.878	0.173	0.369	0.0001

>sp|P41890|SCN1_SCHPO Cut9-interacting protein scn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=scn1 PE=4 SV=2

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 3  LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP-SVIPCF 61
          + DAHCH  D      APQ +    N  V    V G    D   V+ +++ +P  VIP F
Sbjct: 4  IIDAHCHPTD------APQELHLVANLSVGKLIVMGTRPTDQKYVEQLAKEYPGKVIPSF 57

Query: 62 GVHPW 66
          G+HPW
Sbjct: 58 GIHPW 62

Interacts with cut9.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
224126133	308	predicted protein [Populus trichocarpa]	1.0	0.214	0.772	9e-26
297807779	325	hypothetical protein ARALYDRAFT_326186 [	1.0	0.203	0.757	2e-25
18418353	325	TatD related DNase [Arabidopsis thaliana	1.0	0.203	0.727	1e-24
9755782	318	putative protein [Arabidopsis thaliana]	1.0	0.207	0.727	1e-24
449432305	314	PREDICTED: uncharacterized deoxyribonucl	1.0	0.210	0.696	5e-24
359489060	314	PREDICTED: uncharacterized deoxyribonucl	1.0	0.210	0.712	9e-23
15228573	272	TatD related DNase [Arabidopsis thaliana	1.0	0.242	0.681	5e-22
356559526	311	PREDICTED: uncharacterized deoxyribonucl	1.0	0.212	0.666	1e-21
357165389	311	PREDICTED: uncharacterized deoxyribonucl	1.0	0.212	0.651	2e-20
115460064	311	Os04g0577500 [Oryza sativa Japonica Grou	1.0	0.212	0.636	2e-20

>gi|224126133|ref|XP_002319763.1| predicted protein [Populus trichocarpa] gi|222858139|gb|EEE95686.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (301), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 51/66 (77%), Positives = 60/66 (90%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
          MKLFDAHCHLQDPRI +K PQLIAT +++GV+ FAVNGVSE+DWNLVK+M E +PSVIPC
Sbjct: 3  MKLFDAHCHLQDPRILNKTPQLIATALDTGVVRFAVNGVSEKDWNLVKEMGESYPSVIPC 62

Query: 61 FGVHPW 66
          FG+HPW
Sbjct: 63 FGLHPW 68

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807779|ref|XP_002871773.1| hypothetical protein ARALYDRAFT_326186 [Arabidopsis lyrata subsp. lyrata] gi|297317610|gb|EFH48032.1| hypothetical protein ARALYDRAFT_326186 [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/66 (75%), Positives = 58/66 (87%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
          MKLFDAHCHLQDPRI  KAPQLI++ V SGV  FAVNGVSE+DWNLVK+M  ++PSV+PC
Sbjct: 1  MKLFDAHCHLQDPRIITKAPQLISSAVASGVSAFAVNGVSEKDWNLVKEMGAKYPSVVPC 60

Query: 61 FGVHPW 66
          FG+HPW
Sbjct: 61 FGIHPW 66

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418353|ref|NP_568352.1| TatD related DNase [Arabidopsis thaliana] gi|124301002|gb|ABN04753.1| At5g17570 [Arabidopsis thaliana] gi|332005061|gb|AED92444.1| TatD related DNase [Arabidopsis thaliana]

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 58/66 (87%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
          MKLFDAHCHLQDPRI  KAPQ+I++ V SGV  FAVNGVSE+DW+LVK+M  ++PSV+PC
Sbjct: 1  MKLFDAHCHLQDPRIITKAPQIISSAVASGVSAFAVNGVSEKDWSLVKEMGAKYPSVVPC 60

Query: 61 FGVHPW 66
          FG+HPW
Sbjct: 61 FGIHPW 66

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9755782|emb|CAC01901.1| putative protein [Arabidopsis thaliana]

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 58/66 (87%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
          MKLFDAHCHLQDPRI  KAPQ+I++ V SGV  FAVNGVSE+DW+LVK+M  ++PSV+PC
Sbjct: 1  MKLFDAHCHLQDPRIITKAPQIISSAVASGVSAFAVNGVSEKDWSLVKEMGAKYPSVVPC 60

Query: 61 FGVHPW 66
          FG+HPW
Sbjct: 61 FGIHPW 66

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432305|ref|XP_004133940.1| PREDICTED: uncharacterized deoxyribonuclease YabD-like [Cucumis sativus] gi|449525820|ref|XP_004169914.1| PREDICTED: uncharacterized deoxyribonuclease YabD-like [Cucumis sativus]

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/66 (69%), Positives = 58/66 (87%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
          ++LFDAHCHLQDPRIF KAPQLI+  V+SGV+ FAVNG+SE+DW+LVK +SE HP ++P 
Sbjct: 8  LRLFDAHCHLQDPRIFDKAPQLISAAVDSGVVRFAVNGISEKDWHLVKQLSELHPCIVPS 67

Query: 61 FGVHPW 66
          FG+HPW
Sbjct: 68 FGLHPW 73

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489060|ref|XP_002275929.2| PREDICTED: uncharacterized deoxyribonuclease YabD-like [Vitis vinifera]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 56/66 (84%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
          MKLFD+HCHLQDPRI + APQLI T +NSG+ HFAVNGVSE DW+LVK MS+ +  V+PC
Sbjct: 5  MKLFDSHCHLQDPRILNMAPQLIETALNSGIRHFAVNGVSENDWHLVKQMSDTYQCVVPC 64

Query: 61 FGVHPW 66
          FG+HPW
Sbjct: 65 FGLHPW 70

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228573|ref|NP_187000.1| TatD related DNase [Arabidopsis thaliana] gi|6017102|gb|AAF01585.1|AC009895_6 unknown protein [Arabidopsis thaliana] gi|332640430|gb|AEE73951.1| TatD related DNase [Arabidopsis thaliana]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/66 (68%), Positives = 54/66 (81%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
          MKLFDAHCHLQD R+  KA QLI+  +  GV +FAVNG SE+DWNLVK+M E +PSV+PC
Sbjct: 1  MKLFDAHCHLQDKRVIDKASQLISAALAVGVTNFAVNGTSEKDWNLVKEMGETYPSVVPC 60

Query: 61 FGVHPW 66
          FG+HPW
Sbjct: 61 FGLHPW 66

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559526|ref|XP_003548050.1| PREDICTED: uncharacterized deoxyribonuclease sll1786-like [Glycine max]

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/66 (66%), Positives = 55/66 (83%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
          ++L DAHCHLQDPRI  KAP LI T  ++GV +FAVNGVSE+DW+ VK ++E +PSVIPC
Sbjct: 2  LRLLDAHCHLQDPRILSKAPHLIKTAQDTGVAYFAVNGVSEQDWHSVKQLAETYPSVIPC 61

Query: 61 FGVHPW 66
          FG+HPW
Sbjct: 62 FGLHPW 67

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357165389|ref|XP_003580367.1| PREDICTED: uncharacterized deoxyribonuclease BUsg_343-like [Brachypodium distachyon]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 52/66 (78%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
          ++LFDAHCHLQDPRI   AP +I     SGV  FAVNG SE+DW+LVK M++ HPSV+PC
Sbjct: 12 VRLFDAHCHLQDPRIAAAAPTIIRAATASGVARFAVNGTSEKDWHLVKQMAQEHPSVVPC 71

Query: 61 FGVHPW 66
          FG+HPW
Sbjct: 72 FGLHPW 77

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115460064|ref|NP_001053632.1| Os04g0577500 [Oryza sativa Japonica Group] gi|38345538|emb|CAD41308.2| OSJNBa0020J04.13 [Oryza sativa Japonica Group] gi|113565203|dbj|BAF15546.1| Os04g0577500 [Oryza sativa Japonica Group] gi|215692572|dbj|BAG87992.1| unnamed protein product [Oryza sativa Japonica Group] gi|215740781|dbj|BAG96937.1| unnamed protein product [Oryza sativa Japonica Group] gi|222629413|gb|EEE61545.1| hypothetical protein OsJ_15872 [Oryza sativa Japonica Group]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 52/66 (78%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
          ++LFDAHCHLQDPR+   AP LI     +GV  FAVNG SE+DW+LVK M+E +PSV+PC
Sbjct: 12 VRLFDAHCHLQDPRVLSVAPSLIRAATAAGVARFAVNGTSEKDWHLVKQMAEEYPSVVPC 71

Query: 61 FGVHPW 66
          FG+HPW
Sbjct: 72 FGLHPW 77

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
TAIR|locus:2151406	325	AT5G17570 "AT5G17570" [Arabido	1.0	0.203	0.727	1.2e-24
TAIR|locus:2099684	272	AT3G03500 "AT3G03500" [Arabido	1.0	0.242	0.681	1e-22
TIGR_CMR|GSU_3287	255	GSU_3287 "hydrolase, TatD fami	0.954	0.247	0.349	6.3e-08
UNIPROTKB|Q9KPL4	283	VC_2353 "Putative uncharacteri	0.939	0.219	0.353	1.4e-05
TIGR_CMR|VC_2353	283	VC_2353 "conserved hypothetica	0.939	0.219	0.353	1.4e-05
POMBASE|SPAC688.13	335	scn1 "TatD DNase family Scn1"	0.878	0.173	0.369	2.5e-05
UNIPROTKB|F1S2W4	273	TATDN3 "Uncharacterized protei	0.954	0.230	0.296	9.9e-05
UNIPROTKB|A1A4M4	273	TATDN3 "Putative deoxyribonucl	0.954	0.230	0.296	0.00016
UNIPROTKB|E9PQP8	101	TATDN3 "Putative deoxyribonucl	0.954	0.623	0.281	0.00045
UNIPROTKB|H0YCC7	144	TATDN3 "Putative deoxyribonucl	0.954	0.437	0.281	0.00045

TAIR|locus:2151406 AT5G17570 "AT5G17570" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 48/66 (72%), Positives = 58/66 (87%)

Query:     1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
             MKLFDAHCHLQDPRI  KAPQ+I++ V SGV  FAVNGVSE+DW+LVK+M  ++PSV+PC
Sbjct:     1 MKLFDAHCHLQDPRIITKAPQIISSAVASGVSAFAVNGVSEKDWSLVKEMGAKYPSVVPC 60

Query:    61 FGVHPW 66
             FG+HPW
Sbjct:    61 FGIHPW 66

GO:0004536 "deoxyribonuclease activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

TAIR|locus:2099684 AT3G03500 "AT3G03500" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 45/66 (68%), Positives = 54/66 (81%)

Query:     1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
             MKLFDAHCHLQD R+  KA QLI+  +  GV +FAVNG SE+DWNLVK+M E +PSV+PC
Sbjct:     1 MKLFDAHCHLQDKRVIDKASQLISAALAVGVTNFAVNGTSEKDWNLVKEMGETYPSVVPC 60

Query:    61 FGVHPW 66
             FG+HPW
Sbjct:    61 FGLHPW 66

GO:0004536 "deoxyribonuclease activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

TIGR_CMR|GSU_3287 GSU_3287 "hydrolase, TatD family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 127 (49.8 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query:     3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62
             L D HCHL  P +  +  +++A+  ++GV    + GV+ E W+ +  +S R+P V   FG
Sbjct:     2 LTDTHCHLDAPPLRGRLDEVLASARHAGVDRIIIPGVAPEGWDEIVHLSHRYPRVFAAFG 61

Query:    63 VHP 65
             +HP
Sbjct:    62 IHP 64

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

UNIPROTKB|Q9KPL4 VC_2353 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 107 (42.7 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 23/65 (35%), Positives = 31/65 (47%)

Query:     3 LFDAHCHLQDPRIFHKAPQL-IATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIP-C 60
             LFD HCH   P  F   P+L +      GV    V  +  +DW  V ++++R PS I   
Sbjct:    22 LFDTHCHFDFPP-FTATPELELQKAAQHGVRRLVVPSIGPQDWQAVTELAQRFPSTIYYA 80

Query:    61 FGVHP 65
              G HP
Sbjct:    81 LGFHP 85

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_2353 VC_2353 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 107 (42.7 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 23/65 (35%), Positives = 31/65 (47%)

Query:     3 LFDAHCHLQDPRIFHKAPQL-IATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIP-C 60
             LFD HCH   P  F   P+L +      GV    V  +  +DW  V ++++R PS I   
Sbjct:    22 LFDTHCHFDFPP-FTATPELELQKAAQHGVRRLVVPSIGPQDWQAVTELAQRFPSTIYYA 80

Query:    61 FGVHP 65
              G HP
Sbjct:    81 LGFHP 85

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC688.13 scn1 "TatD DNase family Scn1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 106 (42.4 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 24/65 (36%), Positives = 32/65 (49%)

Query:     3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCF 61
             + DAHCH  D      APQ +    N  V    V G    D   V+ +++ +P  VIP F
Sbjct:     4 IIDAHCHPTD------APQELHLVANLSVGKLIVMGTRPTDQKYVEQLAKEYPGKVIPSF 57

Query:    62 GVHPW 66
             G+HPW
Sbjct:    58 GIHPW 62

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IGI

GO:0033554 "cellular response to stress" evidence=IEP

UNIPROTKB|F1S2W4 TATDN3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 99 (39.9 bits), Expect = 9.9e-05, P = 9.9e-05
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query:     3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCF 61
             L D HCHL  P   H    ++     + V+   V      ++  +  +SER+   V+PC 
Sbjct:     8 LVDCHCHLSAPDFDHDLDDVLEKAKKASVMALVVVAEHSGEFEKIMQLSERYNGFVLPCL 67

Query:    62 GVHP 65
             G+HP
Sbjct:    68 GIHP 71

GO:0005739 "mitochondrion" evidence=IEA

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

UNIPROTKB|A1A4M4 TATDN3 "Putative deoxyribonuclease TATDN3" [Bos taurus (taxid:9913)]

 Score = 97 (39.2 bits), Expect = 0.00016, P = 0.00016
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query:     3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCF 61
             L D HCHL  P   H    ++     + V+   V      ++  +  +S+R+   V+PC 
Sbjct:     8 LVDCHCHLSAPDFDHDLDDVLKKAKEANVMALVVVAEHSGEFEKIMQLSQRYNGFVLPCL 67

Query:    62 GVHP 65
             GVHP
Sbjct:    68 GVHP 71

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

UNIPROTKB|E9PQP8 TATDN3 "Putative deoxyribonuclease TATDN3" [Homo sapiens (taxid:9606)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 18/64 (28%), Positives = 28/64 (43%)

Query:     3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCF 61
             L D HCHL  P        ++     + V+          ++  +  +SER+   V+PC 
Sbjct:     8 LVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCL 67

Query:    62 GVHP 65
             GVHP
Sbjct:    68 GVHP 71

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

UNIPROTKB|H0YCC7 TATDN3 "Putative deoxyribonuclease TATDN3" [Homo sapiens (taxid:9606)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 18/64 (28%), Positives = 28/64 (43%)

Query:     3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCF 61
             L D HCHL  P        ++     + V+          ++  +  +SER+   V+PC 
Sbjct:     8 LVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCL 67

Query:    62 GVHP 65
             GVHP
Sbjct:    68 GVHP 71

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00130731	hypothetical protein (308 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.X.2264.1	hypothetical protein (594 aa)	•								0.695
	estExt_Genewise1_v1.C_LG_IV3708	hypothetical protein (348 aa)	•								0.541
	gw1.V.1493.1	annotation not avaliable (275 aa)	•								0.508
	eugene3.143650001	hypothetical protein (163 aa)	•						•		0.507
	eugene3.31140002	Predicted protein (94 aa)	•						•		0.412

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	66
COG0084	256	COG0084, TatD, Mg-dependent DNase [DNA replication	1e-14
cd01310	251	cd01310, TatD_DNAse, TatD like proteins; E	5e-14
pfam01026	255	pfam01026, TatD_DNase, TatD related DNase	2e-11
TIGR00010	252	TIGR00010, TIGR00010, hydrolase, TatD family	1e-07

>gnl|CDD|223162 COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]

 Score = 64.5 bits (158), Expect = 1e-14
 Identities = 22/66 (33%), Positives = 32/66 (48%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
          M L D HCHL          ++IA    +GV    V G   ED+    +++E++P+V   
Sbjct: 1  MMLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPNVYAA 60

Query: 61 FGVHPW 66
           GVHP 
Sbjct: 61 VGVHPL 66

Length = 256

>gnl|CDD|238635 cd01310, TatD_DNAse, TatD like proteins; E

 Score = 63.4 bits (155), Expect = 5e-14
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 3  LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62
          L D HCHL  P+       ++A    +GV+   V G   +      ++++++ +V    G
Sbjct: 1  LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAKKYDNVYAAVG 60

Query: 63 VHPW 66
          +HP 
Sbjct: 61 LHPH 64

coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. Length = 251

>gnl|CDD|216250 pfam01026, TatD_DNase, TatD related DNase

 Score = 56.1 bits (136), Expect = 2e-11
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 4  FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCFG 62
           DAHCHL          ++I     +GV    V G   ED+    +++ ++P  V    G
Sbjct: 1  IDAHCHLDFKDFDEDRDEVIERAREAGVTAVVVVGTDLEDFLRALELARKYPGKVYAAVG 60

Query: 63 VHPW 66
          VHP 
Sbjct: 61 VHPH 64

This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme. Length = 255

>gnl|CDD|232780 TIGR00010, TIGR00010, hydrolase, TatD family

 Score = 45.7 bits (109), Expect = 1e-07
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 3  LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62
          L DAHCHL          ++I     +GV      G   ED+    +++E++P+V    G
Sbjct: 1  LIDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVGTDLEDFLRALELAEKYPNVYAAVG 60

Query: 63 VHPW 66
          VHP 
Sbjct: 61 VHPL 64

PSI-BLAST, starting with a urease alpha subunit, finds a large superfamily of proteins, including a number of different enzymes that act as hydrolases at C-N bonds other than peptide bonds (EC 3.5.-.-), many uncharacterized proteins, and the members of this family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity [Unknown function, Enzymes of unknown specificity]. Length = 252

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
PRK10812	265	putative DNAse; Provisional	99.91
COG0084	256	TatD Mg-dependent DNase [DNA replication, recombin	99.91
PRK11449	258	putative deoxyribonuclease YjjV; Provisional	99.89
PRK10425	258	DNase TatD; Provisional	99.88
PF01026	255	TatD_DNase: TatD related DNase The Pfam entry find	99.77
TIGR00010	252	hydrolase, TatD family. Several genomes have multi	99.69
cd01310	251	TatD_DNAse TatD like proteins; E.coli TatD is a cy	99.65
KOG3020	296	consensus TatD-related DNase [Replication, recombi	99.36
TIGR03583	365	EF_0837 probable amidohydrolase EF_0837/AHA_3915.	98.42
cd01311	263	PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC)	98.26
cd00530	293	PTE Phosphotriesterase (PTE) catalyzes the hydroly	98.24
COG1099	254	Predicted metal-dependent hydrolases with the TIM-	98.16
cd01295	422	AdeC Adenine deaminase (AdeC) directly deaminates	98.15
cd01292	275	metallo-dependent_hydrolases Superfamily of metall	97.57
COG3618	279	Predicted metal-dependent hydrolase of the TIM-bar	97.44
COG1831	285	Predicted metal-dependent hydrolase (urease superf	97.34
PRK07328	269	histidinol-phosphatase; Provisional	97.33
PRK08123	270	histidinol-phosphatase; Reviewed	97.16
smart00481	67	POLIIIAc DNA polymerase alpha chain like domain. D	97.13
PRK00912	237	ribonuclease P protein component 3; Provisional	97.09
PF02811	175	PHP: PHP domain; InterPro: IPR004013 The PHP (Poly	97.07
COG4464	254	CapC Capsular polysaccharide biosynthesis protein	97.05
PRK09248	246	putative hydrolase; Validated	97.0
cd01294	335	DHOase Dihydroorotase (DHOase) catalyzes the rever	96.75
cd01317	374	DHOase_IIa Dihydroorotase (DHOase), subgroup IIa;	96.73
PRK08392	215	hypothetical protein; Provisional	96.38
PRK07369	418	dihydroorotase; Provisional	96.36
PRK08609	570	hypothetical protein; Provisional	96.36
cd01318	361	DHOase_IIb Dihydroorotase (DHOase), subgroup IIb;	96.32
cd01316	344	CAD_DHOase The eukaryotic CAD protein is a trifunc	96.25
PF02614	462	UxaC: Glucuronate isomerase; InterPro: IPR003766 U	96.24
PRK02925	466	glucuronate isomerase; Reviewed	96.2
PRK09532	874	DNA polymerase III subunit alpha; Reviewed	96.16
PRK07135	973	dnaE DNA polymerase III DnaE; Validated	95.95
cd01302	337	Cyclic_amidohydrolases Cyclic amidohydrolases, inc	95.93
PRK04250	398	dihydroorotase; Provisional	95.92
PRK07374	1170	dnaE DNA polymerase III subunit alpha; Validated	95.82
cd01299	342	Met_dep_hydrolase_A Metallo-dependent hydrolases,	95.82
TIGR00221	380	nagA N-acetylglucosamine-6-phosphate deacetylase.	95.81
PRK07945	335	hypothetical protein; Provisional	95.79
cd00375	567	Urease_alpha Urease alpha-subunit; Urease is a nic	95.77
PRK01211	409	dihydroorotase; Provisional	95.63
COG0613	258	Predicted metal-dependent phosphoesterases (PHP fa	95.6
COG1904	463	UxaC Glucuronate isomerase [Carbohydrate transport	95.53
PRK09059	429	dihydroorotase; Validated	95.49
PRK10027	588	cryptic adenine deaminase; Provisional	95.48
TIGR01178	552	ade adenine deaminase. The family described by thi	95.39
TIGR01856	253	hisJ_fam histidinol phosphate phosphatase HisJ fam	95.3
PRK06826	1151	dnaE DNA polymerase III DnaE; Reviewed	95.3
PRK00369	392	pyrC dihydroorotase; Provisional	95.23
PRK09236	444	dihydroorotase; Reviewed	95.21
PRK06189	451	allantoinase; Provisional	94.9
PF13594	68	Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1	94.81
PRK02382	443	dihydroorotase; Provisional	94.8
PRK13308	569	ureC urease subunit alpha; Reviewed	94.74
PRK07627	425	dihydroorotase; Provisional	94.71
PRK05588	255	histidinol-phosphatase; Provisional	94.61
TIGR00857	411	pyrC_multi dihydroorotase, multifunctional complex	94.41
PRK13404	477	dihydropyrimidinase; Provisional	94.36
PRK08044	449	allantoinase; Provisional	94.24
PLN02795	505	allantoinase	94.19
PRK09357	423	pyrC dihydroorotase; Validated	94.01
PRK09060	444	dihydroorotase; Validated	93.98
PRK07575	438	dihydroorotase; Provisional	93.96
cd00854	374	NagA N-acetylglucosamine-6-phosphate deacetylase,	93.89
cd01315	447	L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas	93.87
PRK08417	386	dihydroorotase; Provisional	93.84
PRK11170	382	nagA N-acetylglucosamine-6-phosphate deacetylase;	93.82
TIGR01405	1213	polC_Gram_pos DNA polymerase III, alpha chain, Gra	93.69
PF01979	333	Amidohydro_1: Amidohydrolase family; InterPro: IPR	93.68
PRK05672	1046	dnaE2 error-prone DNA polymerase; Validated	93.58
PRK08323	459	phenylhydantoinase; Validated	93.47
PRK05673	1135	dnaE DNA polymerase III subunit alpha; Validated	93.44
KOG4549	144	consensus Magnesium-dependent phosphatase [General	93.39
PRK00448	1437	polC DNA polymerase III PolC; Validated	93.25
TIGR00594	1022	polc DNA-directed DNA polymerase III (polc). This	93.24
TIGR03178	443	allantoinase allantoinase. This enzyme carries out	93.08
cd01314	447	D-HYD D-hydantoinases (D-HYD) also called dihydrop	92.79
PRK10657	388	isoaspartyl dipeptidase; Provisional	92.76
PRK13207	568	ureC urease subunit alpha; Reviewed	92.73
PF04909	273	Amidohydro_2: Amidohydrolase; InterPro: IPR006992	92.6
COG0685	291	MetF 5,10-methylenetetrahydrofolate reductase [Ami	92.59
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	91.97
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	91.95
cd01307	338	Met_dep_hydrolase_B Metallo-dependent hydrolases,	91.94
PLN02942	486	dihydropyrimidinase	91.87
PRK13985	568	ureB urease subunit beta; Provisional	91.85
TIGR02033	454	D-hydantoinase D-hydantoinase. This model represen	91.68
PRK09237	380	dihydroorotase; Provisional	91.62
PRK12394	379	putative metallo-dependent hydrolase; Provisional	91.55
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	91.44
COG1387	237	HIS2 Histidinol phosphatase and related hydrolases	91.13
PRK13309	572	ureC urease subunit alpha; Reviewed	91.07
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	91.0
TIGR00696	177	wecB_tagA_cpsF bacterial polymer biosynthesis prot	90.92
PLN02591	250	tryptophan synthase	90.9
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	90.5
TIGR00677	281	fadh2_euk methylenetetrahydrofolate reductase, euk	90.45
PRK05985	391	cytosine deaminase; Provisional	90.35
PRK02134	249	hypothetical protein; Provisional	90.22
COG0044	430	PyrC Dihydroorotase and related cyclic amidohydrol	89.96
TIGR00676	272	fadh2 5,10-methylenetetrahydrofolate reductase, pr	89.56
TIGR02318	376	phosphono_phnM phosphonate metabolism protein PhnM	89.42
cd01293	398	Bact_CD Bacterial cytosine deaminase and related m	89.41
cd01297	415	D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci	89.36
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	89.35
cd06533	171	Glyco_transf_WecG_TagA The glycosyltransferase Wec	88.86
COG1820	380	NagA N-acetylglucosamine-6-phosphate deacetylase [	88.77
cd01298	411	ATZ_TRZ_like TRZ/ATZ family contains enzymes from	88.45
cd01308	387	Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy	88.29
PRK13206	573	ureC urease subunit alpha; Reviewed	88.27
TIGR02967	401	guan_deamin guanine deaminase. This model describe	88.13
TIGR00856	341	pyrC_dimer dihydroorotase, homodimeric type. This	87.68
TIGR01792	567	urease_alph urease, alpha subunit. This model desc	87.53
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	87.53
PRK06920	1107	dnaE DNA polymerase III DnaE; Reviewed	87.3
PLN02303	837	urease	86.99
PF03808	172	Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp	86.91
TIGR03473	283	HpnK hopanoid biosynthesis associated protein HpnK	86.23
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	86.05
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	86.02
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	85.79
PRK07583	438	cytosine deaminase-like protein; Validated	85.39
PRK09228	433	guanine deaminase; Provisional	84.93
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	84.47
PRK05451	345	dihydroorotase; Provisional	84.23
PRK09432	296	metF 5,10-methylenetetrahydrofolate reductase; Pro	84.22
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	83.84
TIGR01975	389	isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i	83.74
COG0205	347	PfkA 6-phosphofructokinase [Carbohydrate transport	83.33
COG0804	568	UreC Urea amidohydrolase (urease) alpha subunit [A	83.17
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	83.02
cd01309	359	Met_dep_hydrolase_C Metallo-dependent hydrolases,	82.65
PRK09453	182	phosphodiesterase; Provisional	82.37
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	82.31
PF04794	261	YdjC: YdjC-like protein; InterPro: IPR006879 This	82.27
PF07085	105	DRTGG: DRTGG domain; InterPro: IPR010766 This pres	82.25
PRK07279	1034	dnaE DNA polymerase III DnaE; Reviewed	82.11
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	81.89
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	81.73
PRK05898	971	dnaE DNA polymerase III DnaE; Validated	81.6
PRK06846	410	putative deaminase; Validated	81.51
cd00953	279	KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas	81.37
PRK07228	445	N-ethylammeline chlorohydrolase; Provisional	81.29
TIGR02127	261	pyrF_sub2 orotidine 5'-phosphate decarboxylase, su	81.28
COG0587	1139	DnaE DNA polymerase III, alpha subunit [DNA replic	81.08
PRK09061	509	D-glutamate deacylase; Validated	81.05
PF02608	306	Bmp: Basic membrane protein; InterPro: IPR003760 T	80.97
COG1228	406	HutI Imidazolonepropionase and related amidohydrol	80.8
cd01481	165	vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V	80.25
COG3142	241	CutC Uncharacterized protein involved in copper re	80.13
KOG4175	268	consensus Tryptophan synthase alpha chain [Amino a	80.07
PRK09875	292	putative hydrolase; Provisional	80.04

>PRK10812 putative DNAse; Provisional

Probab=99.91  E-value=5.3e-24  Score=132.18  Aligned_cols=66  Identities=23%  Similarity=0.430  Sum_probs=62.2

Q ss_pred             CceEeeccCCCC---CcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            1 MKLFDAHCHLQD---PRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         1 m~~iDsH~Hl~~---~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      |++|||||||+.   ..|..|+++++++|+++||.+++++|+++++|.++++|+++||++++++|+|||
T Consensus         1 ~~~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~   69 (265)
T PRK10812          1 MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLPGYRHMRDLVGERDNVVFSCGVHPL   69 (265)
T ss_pred             CceEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence            789999999984   456779999999999999999999999999999999999999999999999997

>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]

Probab=99.91  E-value=6.1e-24  Score=131.54  Aligned_cols=66  Identities=33%  Similarity=0.573  Sum_probs=64.4

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      |++||+||||+.+.|.+|.++++++|+++||.+++++|++++++..+++|+++||++|+++|+||+
T Consensus         1 ~~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~~v~~~~G~HP~   66 (256)
T COG0084           1 MMLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPNVYAAVGVHPL   66 (256)
T ss_pred             CccEEeeeCCCchhhcCCHHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCCCeEEEEeeCCC
Confidence            789999999999889999999999999999999999999999999999999999999999999997

>PRK11449 putative deoxyribonuclease YjjV; Provisional

Probab=99.89  E-value=6.7e-23  Score=126.85  Aligned_cols=66  Identities=23%  Similarity=0.444  Sum_probs=63.1

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      |.+||+||||+...+.++.++++++|+++||.+++++|+++++|.++++++++||++++++|+|||
T Consensus         3 ~~~iD~HcHl~~~~~~~~~~~~l~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~   68 (258)
T PRK11449          3 CRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAERYQPLYAALGLHPG   68 (258)
T ss_pred             ceEEEeccCCCChhhccCHHHHHHHHHHCCCCEEEEeeCCHHHHHHHHHHHHhCCCEEEEEeeCcC
Confidence            568999999998888889999999999999999999999999999999999999999999999997

>PRK10425 DNase TatD; Provisional

Probab=99.88  E-value=1.9e-22  Score=124.87  Aligned_cols=64  Identities=20%  Similarity=0.393  Sum_probs=61.8

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      +||+||||+.+.+.+|.++++++|+++||.+++++|+++++|.++++++++||++++++|+|||
T Consensus         1 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~   64 (258)
T PRK10425          1 MFDIGVNLTSSQFAKDRDDVVARAFAAGVNGMLITGTNLRESQQAQKLARQYPSCWSTAGVHPH   64 (258)
T ss_pred             CEEeeeCcCChhhhccHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEEEeCcC
Confidence            5899999998888899999999999999999999999999999999999999999999999997

>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition

Probab=99.77  E-value=9.3e-19  Score=107.78  Aligned_cols=63  Identities=35%  Similarity=0.828  Sum_probs=56.0

Q ss_pred             EeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC-eEeeeeecCC
Q 035377            4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCFGVHPW   66 (66)
Q Consensus         4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~-i~~~~GiHP~   66 (66)
                      ||+|||++...+.++.+++++++.+.|+..++.+++++++++.+.++++++|. +++++|+|||
T Consensus         1 iD~H~Hl~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~GiHP~   64 (255)
T PF01026_consen    1 IDAHCHLDSPRFEEDRPEVLERAREAGVSAIIIVSTDPEDWERVLELASQYPDRVYPALGIHPW   64 (255)
T ss_dssp             EEEEE-TTSGGGTTTHHHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHHHTTTEEEEEE---GG
T ss_pred             CcCccCCCChhhCcCHHHHHHHHHHcCCCEEEEcCCCHHHhHHHHHHHhcCCCeEEEEecCCcc
Confidence            89999999876788999999999999999999999999999999999999998 9999999997

; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....

>TIGR00010 hydrolase, TatD family

Probab=99.69  E-value=1.5e-16  Score=96.45  Aligned_cols=64  Identities=31%  Similarity=0.515  Sum_probs=58.3

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      +||+|||++...+..+++++++++.++|+..++++++++++++++.++++++|++++++|+|||
T Consensus         1 ~iD~H~Hl~~~~~~~~~~~~~~~~~~~Gv~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~GihP~   64 (252)
T TIGR00010         1 LIDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVGTDLEDFLRALELAEKYPNVYAAVGVHPL   64 (252)
T ss_pred             CEEeccCCCChhhccCHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCEEEEEEeCcc
Confidence            6899999986554447999999999999999999999999999999999999999999999996

Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.

>cd01310 TatD_DNAse TatD like proteins; E

Probab=99.65  E-value=6.6e-16  Score=93.45  Aligned_cols=64  Identities=25%  Similarity=0.490  Sum_probs=58.4

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      +||+|||++...+..+.+++++++.+.||.+++++++.+++++++.+++++++++++++|+||+
T Consensus         1 ~~D~H~H~~~~~~~~~~~~~l~~~~~~gv~~~v~~~~~~~~~~~~~~la~~~~~i~~~~G~hP~   64 (251)
T cd01310           1 LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAKKYDNVYAAVGLHPH   64 (251)
T ss_pred             CEEeeeCCCchhhccCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCeEEEEeeCcc
Confidence            6999999987554457899999999999999999999999999999999999999999999996

coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.

>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]

Probab=99.36  E-value=1.3e-12  Score=82.51  Aligned_cols=65  Identities=35%  Similarity=0.513  Sum_probs=60.2

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC-CCeEeeeeecCC
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH-PSVIPCFGVHPW   66 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~-~~i~~~~GiHP~   66 (66)
                      +++|.++|+.......+...++.+|...|+.+++++|++.++++.+++|+++| +.+++++|+|||
T Consensus        17 ~~~~~~~~~~~~~~~~d~s~v~~~a~~~~v~~~~v~gt~~~d~~~~~~l~~~y~~~v~~t~G~HP~   82 (296)
T KOG3020|consen   17 MLEDIYCHIQAHPSDSDASQVLERAVQAGVSKLIVTGTSLKDSKEALELAEKYPGSVYPTFGVHPH   82 (296)
T ss_pred             hhchhhhccccCCCCccchHHHHHHHhccceEEEEeCCCcchHHHHHHHHhhCCCceeeccCcCCC
Confidence            47899999988777778888999999999999999999999999999999999 569999999997

>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915

Probab=98.42  E-value=7.4e-07  Score=57.20  Aligned_cols=61  Identities=16%  Similarity=0.272  Sum_probs=44.0

Q ss_pred             ceEeeccCCCC--CcCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCC-CeEeee-----eecC
Q 035377            2 KLFDAHCHLQD--PRIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHP-SVIPCF-----GVHP   65 (66)
Q Consensus         2 ~~iDsH~Hl~~--~~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~-~i~~~~-----GiHP   65 (66)
                      .+||+|||+..  ..+..+.+   +.+...||..++.+++ .+.+++...+++++++ ++++++     |+||
T Consensus        51 G~ID~H~H~~~~~~~~~~~~~---~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~  120 (365)
T TIGR03583        51 GWIDDHTHCFPKSALYYDEPD---EIGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNISRIGLVA  120 (365)
T ss_pred             CEEEeeeccCCCcccccCCHh---HhhhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEeeehhccccC
Confidence            48999999973  22334444   3357789999887665 6788888888888887 577765     8775

Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.

>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM)

Probab=98.26  E-value=5.1e-06  Score=51.42  Aligned_cols=63  Identities=22%  Similarity=0.159  Sum_probs=45.3

Q ss_pred             eEeeccCCCCCcC------------CCCHHHHHHHHHhcCCcEEEeeccC--hhhHHHHHHHHHhCCCeEeeeeecC
Q 035377            3 LFDAHCHLQDPRI------------FHKAPQLIATTVNSGVLHFAVNGVS--EEDWNLVKDMSERHPSVIPCFGVHP   65 (66)
Q Consensus         3 ~iDsH~Hl~~~~~------------~~~~~~~~~~~~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~~i~~~~GiHP   65 (66)
                      .||||+|+....+            ...++++++.++..||.+.+++..+  ..+....++..+.++.+.+.++++|
T Consensus         2 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq~~~~~~~n~~~~~~~~~~~r~~g~~~~~p   78 (263)
T cd01311           2 AVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALASNGKARGGATVDP   78 (263)
T ss_pred             CEEeeeeeeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeCccccCCchHHHHHHHhhCCCeEEEEEECC
Confidence            5899999975332            2468899999999999998777633  3345566666665556777777776

This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.

>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon

Probab=98.24  E-value=3.3e-06  Score=52.60  Aligned_cols=47  Identities=6%  Similarity=0.014  Sum_probs=40.8

Q ss_pred             HHHHHHHHhcCCcEEEeeccC--hhhHHHHHHHHHhCC-CeEeeeeecCC
Q 035377           20 PQLIATTVNSGVLHFAVNGVS--EEDWNLVKDMSERHP-SVIPCFGVHPW   66 (66)
Q Consensus        20 ~~~~~~~~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~-~i~~~~GiHP~   66 (66)
                      .+.+++++++||..++.+|++  .+++..+.+++++++ ++++++|+||+
T Consensus        35 ~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G~hp~   84 (293)
T cd00530          35 KEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKD   84 (293)
T ss_pred             HHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecccCCC
Confidence            356678899999999999985  478999999999998 79999999995

PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.

>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]

Probab=98.16  E-value=1.9e-06  Score=53.18  Aligned_cols=59  Identities=20%  Similarity=0.292  Sum_probs=38.9

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccCh------h----hHHHHHHH----HHhCC-CeEeeeeecC
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSE------E----DWNLVKDM----SERHP-SVIPCFGVHP   65 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~------~----~~~~~~~l----~~~~~-~i~~~~GiHP   65 (66)
                      ++||+|.|++...|    + =++++..+||+.++.++-++      +    -|++++..    ++++. +++.++|+||
T Consensus         1 ~~iD~HiH~d~r~~----e-DlekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHP   74 (254)
T COG1099           1 MYIDSHIHLDVRGF----E-DLEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHP   74 (254)
T ss_pred             CccccccccccccH----H-HHHHHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCC
Confidence            47999999986442    2 24566677998887766543      2    24444433    34444 4899999999

>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine

Probab=98.15  E-value=9.9e-06  Score=53.18  Aligned_cols=58  Identities=10%  Similarity=0.291  Sum_probs=46.2

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHhCC-CeEeee
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSERHP-SVIPCF   61 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~~~-~i~~~~   61 (66)
                      .+||+|+|+..+.+  +.++..+.+...|+..++...      .+.+.++..++.++++| ++|.++
T Consensus        10 G~ID~H~Hi~~~~~--~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~   74 (422)
T cd01295          10 GFIDAHLHIESSML--TPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML   74 (422)
T ss_pred             CEEEccCCcCCCCC--ChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence            38999999987543  456788889999999988753      67888999999888888 476655

This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.

>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=97.57  E-value=9.5e-05  Score=44.26  Aligned_cols=63  Identities=16%  Similarity=0.285  Sum_probs=43.5

Q ss_pred             eEeeccCCCCCcCC--------------------CCHHHHHHHHHhcCCcEEEeeccCh------hhHHHHHHHHHhCCC
Q 035377            3 LFDAHCHLQDPRIF--------------------HKAPQLIATTVNSGVLHFAVNGVSE------EDWNLVKDMSERHPS   56 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~--------------------~~~~~~~~~~~~~gv~~~~~~~~~~------~~~~~~~~l~~~~~~   56 (66)
                      +||+|+|+....+.                    ......+.++.+.||..++..+...      +..+.+.+.+++.|+
T Consensus         1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (275)
T cd01292           1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG   80 (275)
T ss_pred             CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence            58999998653221                    2356777889999999887765432      467788888888753


Q ss_pred             --eEeeeeecC
Q 035377           57 --VIPCFGVHP   65 (66)
Q Consensus        57 --i~~~~GiHP   65 (66)
                        ++.+.|+++
T Consensus        81 ~~~~~~~~~~~   91 (275)
T cd01292          81 IRVVLGLGIPG   91 (275)
T ss_pred             eeeEEeccCCC
Confidence              555566654

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.

>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]

Probab=97.44  E-value=0.00027  Score=44.83  Aligned_cols=57  Identities=19%  Similarity=0.114  Sum_probs=41.0

Q ss_pred             CceEeeccCCCCCcC--------------CCCHHHHHHHHHhcCCcEEEee--ccChhhHHHHHHHHHhCCCe
Q 035377            1 MKLFDAHCHLQDPRI--------------FHKAPQLIATTVNSGVLHFAVN--GVSEEDWNLVKDMSERHPSV   57 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~--------------~~~~~~~~~~~~~~gv~~~~~~--~~~~~~~~~~~~l~~~~~~i   57 (66)
                      +++||||.|+.....              .-.+++..+.++..||.+.+.+  +.++.|++..++..++.++.
T Consensus         7 ~~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq~~~~~~D~~~e~~~v~~~~~~   79 (279)
T COG3618           7 QMIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQVNVDPRDNEKELAFVAELAER   79 (279)
T ss_pred             ccccchhhhhhcccccCCCCCCcccccCCCCCHHHHHHHHHhcCcceeEEEecccCccchHHHHHHHHhhHHh
Confidence            368999999975421              1258899999999999986555  45666888777766665543

>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]

Probab=97.34  E-value=0.0013  Score=41.69  Aligned_cols=63  Identities=24%  Similarity=0.364  Sum_probs=43.5

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeec----------cChhhHHHHHH----H---HH-hCCC-eEeee
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNG----------VSEEDWNLVKD----M---SE-RHPS-VIPCF   61 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~----------~~~~~~~~~~~----l---~~-~~~~-i~~~~   61 (66)
                      +.++|.|.|++...  +...+.+++.+.+|=..++++.          +..++++++.+    +   ++ ..+. .++.+
T Consensus         5 ~~v~DnH~H~np~~--gg~~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vv   82 (285)
T COG1831           5 IPVTDNHFHLNPKN--GGALEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVV   82 (285)
T ss_pred             cceecceeeecCCc--CcHHHHHHHHHHcCCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEe
Confidence            35799999998633  3578899999999877766543          23456665443    2   22 2454 79999


Q ss_pred             eecC
Q 035377           62 GVHP   65 (66)
Q Consensus        62 GiHP   65 (66)
                      |+||
T Consensus        83 GvHP   86 (285)
T COG1831          83 GVHP   86 (285)
T ss_pred             ccCH
Confidence            9999

>PRK07328 histidinol-phosphatase; Provisional

Probab=97.33  E-value=0.0027  Score=39.62  Aligned_cols=37  Identities=14%  Similarity=0.170  Sum_probs=29.2

Q ss_pred             CceEeeccCCCCC-cCCCCHHHHHHHHHhcCCcEEEee
Q 035377            1 MKLFDAHCHLQDP-RIFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         1 m~~iDsH~Hl~~~-~~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      |+++|.|+|-... .-...+++++++|.+.|++.+...
T Consensus         1 ~m~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~~T   38 (269)
T PRK07328          1 KMLVDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIGFT   38 (269)
T ss_pred             CCceeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEEEe
Confidence            7789999998653 234579999999999999876543

>PRK08123 histidinol-phosphatase; Reviewed

Probab=97.16  E-value=0.0039  Score=38.98  Aligned_cols=37  Identities=16%  Similarity=0.111  Sum_probs=28.7

Q ss_pred             CceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEee
Q 035377            1 MKLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      |+++|.|+|.....-  .+.+++++++|.+.|+..+...
T Consensus         1 ~m~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~t   39 (270)
T PRK08123          1 MMKRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITFT   39 (270)
T ss_pred             CCccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Confidence            678999999865322  2468999999999999976543

>smart00481 POLIIIAc DNA polymerase alpha chain like domain

Probab=97.13  E-value=0.0077  Score=29.98  Aligned_cols=57  Identities=14%  Similarity=0.123  Sum_probs=37.0

Q ss_pred             eeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeee
Q 035377            5 DAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFG   62 (66)
Q Consensus         5 DsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~G   62 (66)
                      |.|+|-....  -...+++++++|++.|++.+.+.-. +.....+..++++++ ++..-.|
T Consensus         1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~-gi~~i~G   60 (67)
T smart00481        1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKA-GIKPIIG   60 (67)
T ss_pred             CCccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHc-CCeEEEE
Confidence            6788876442  2347999999999999997654332 244555666777765 3444444

DNA polymerase alpha chain like domain, incl. family of hypothetical proteins

>PRK00912 ribonuclease P protein component 3; Provisional

Probab=97.09  E-value=0.0013  Score=40.35  Aligned_cols=35  Identities=23%  Similarity=0.349  Sum_probs=28.4

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV   36 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~   36 (66)
                      |+++|.|+|-... -...+++++++|.+.|++.+..
T Consensus         1 ~m~~DlHvHt~~d-~~~~~~e~i~~A~~~Gl~~i~i   35 (237)
T PRK00912          1 MKFYDLNVHAVPD-GYDTVLRLISEASHLGYSGIAL   35 (237)
T ss_pred             CCceEeccCCCCC-CcchHHHHHHHHHHCCCCEEEE
Confidence            7899999998422 2557999999999999997654

>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain

Probab=97.07  E-value=0.0072  Score=34.52  Aligned_cols=59  Identities=12%  Similarity=0.132  Sum_probs=37.7

Q ss_pred             EeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377            4 FDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         4 iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      ||.|||-...  .-...+++++++|.+.|++.+.++-- +...+....+.+++. ++..-.|+
T Consensus         1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~-~i~vi~G~   62 (175)
T PF02811_consen    1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKK-GIKVIPGV   62 (175)
T ss_dssp             EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHT-TSEEEEEE
T ss_pred             CCccccccCcchhhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhc-CCceEEeE
Confidence            7999998654  33358999999999999997654332 344555556666653 44444453

This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....

>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.05  E-value=0.00046  Score=42.71  Aligned_cols=36  Identities=17%  Similarity=0.351  Sum_probs=25.8

Q ss_pred             eEeeccCCCC--CcC---CCCHHHHHHHHHhcCCcEEEeec
Q 035377            3 LFDAHCHLQD--PRI---FHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         3 ~iDsH~Hl~~--~~~---~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      +||.|||+-.  +.-   .++...++++|...||..+++.+
T Consensus         1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTs   41 (254)
T COG4464           1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATS   41 (254)
T ss_pred             CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecc
Confidence            5899999842  111   23455678899999999998754

>PRK09248 putative hydrolase; Validated

Probab=97.00  E-value=0.0094  Score=36.66  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=28.0

Q ss_pred             eEeeccCCCCCc-CCCCHHHHHHHHHhcCCcEEEee
Q 035377            3 LFDAHCHLQDPR-IFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         3 ~iDsH~Hl~~~~-~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      ++|.|+|-.... -...+++++++|.+.|++.+.+.
T Consensus         4 ~~D~H~HT~~s~~~~~~~~e~v~~A~~~G~~~i~iT   39 (246)
T PRK09248          4 PVDTHTHTIASGHAYSTLHENAAEAKQKGLKLFAIT   39 (246)
T ss_pred             ceEeCcCCCCCCCCCCCHHHHHHHHHHCCCCEEEEC
Confidence            789999986532 23479999999999999987654

>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis

Probab=96.75  E-value=0.008  Score=38.42  Aligned_cols=59  Identities=15%  Similarity=0.067  Sum_probs=40.3

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc------Chhh-HHHHHHHHHhC-C-CeEeeeeecC
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV------SEED-WNLVKDMSERH-P-SVIPCFGVHP   65 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~-~~~~~~l~~~~-~-~i~~~~GiHP   65 (66)
                      +||.|||+-.+   +++....+.|...| ..++....      +.+. .++..++++++ + .+.+.+|+||
T Consensus         6 ~iD~h~h~~~~---~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   73 (335)
T cd01294           6 PDDMHLHLRDG---AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYL   73 (335)
T ss_pred             cceeEecCCCc---hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEec
Confidence            79999999753   67888889999999 98876532      2232 33455566665 3 4666567765

In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.

>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis

Probab=96.73  E-value=0.014  Score=37.89  Aligned_cols=54  Identities=17%  Similarity=0.180  Sum_probs=37.8

Q ss_pred             ceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHhCC
Q 035377            2 KLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSERHP   55 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~~~   55 (66)
                      .+||.|+|+..+.+  .++.....+.|..-||..++....      +.+.++...+.+++.+
T Consensus        15 G~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~   76 (374)
T cd01317          15 GLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVG   76 (374)
T ss_pred             CEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCC
Confidence            37999999965332  468889999999999998886542      2344555555555544

This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.

>PRK08392 hypothetical protein; Provisional

Probab=96.38  E-value=0.022  Score=34.44  Aligned_cols=33  Identities=18%  Similarity=0.172  Sum_probs=26.5

Q ss_pred             EeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 035377            4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV   36 (66)
Q Consensus         4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~   36 (66)
                      ||.|+|-....-...+++++++|.+.|++.+..
T Consensus         1 ~D~H~HT~~sd~~~~~~e~v~~A~~~Gl~~i~i   33 (215)
T PRK08392          1 MDLHTHTVYSDGIGSVRDNIAEAERKGLRLVGI   33 (215)
T ss_pred             CccccCCCCcCCcCCHHHHHHHHHHcCCCEEEE
Confidence            699999865444567999999999999987644

>PRK07369 dihydroorotase; Provisional

Probab=96.36  E-value=0.026  Score=37.43  Aligned_cols=54  Identities=17%  Similarity=0.198  Sum_probs=38.5

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHhCC
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSERHP   55 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~~~   55 (66)
                      .+||.|+|+..+.  ..++....-+.|...||..++...      .+.+.++...+.+++..
T Consensus        58 G~ID~H~H~~~~~~~~~e~~~s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~  119 (418)
T PRK07369         58 GLVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIP  119 (418)
T ss_pred             CEEecccccCCCCcCCCccHHHHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccC
Confidence            3899999986533  346888888999999999887654      23455666666666543

>PRK08609 hypothetical protein; Provisional

Probab=96.36  E-value=0.032  Score=38.51  Aligned_cols=35  Identities=14%  Similarity=0.116  Sum_probs=28.1

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      .+|.|||.....-..++++++++|.+.|++.+.+.
T Consensus       335 ~~DlH~HT~~sDg~~sleemv~~A~~~Gl~~i~iT  369 (570)
T PRK08609        335 QGDLHMHTTWSDGAFSIEEMVEACIAKGYEYMAIT  369 (570)
T ss_pred             cCCccccCCCCCCCCCHHHHHHHHHHCCCCEEEEe
Confidence            47999998754434579999999999999987654

>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis

Probab=96.32  E-value=0.034  Score=36.18  Aligned_cols=52  Identities=13%  Similarity=0.124  Sum_probs=37.2

Q ss_pred             ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHh
Q 035377            2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSER   53 (66)
Q Consensus         2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~   53 (66)
                      .+||.|+|+..+  ...+|++..-+.|..-||..++.+-      .+.+.++...+.+++
T Consensus         7 G~iD~HvH~r~pg~~~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~   66 (361)
T cd01318           7 GVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAA   66 (361)
T ss_pred             CeeEeeecCCCCCCCccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhcc
Confidence            379999999653  3467888888899999999877642      234556555566654

This group contains the archeal members of the DHOase family.

>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis

Probab=96.25  E-value=0.031  Score=36.30  Aligned_cols=53  Identities=19%  Similarity=0.285  Sum_probs=37.8

Q ss_pred             ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHhC
Q 035377            2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSERH   54 (66)
Q Consensus         2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~~   54 (66)
                      .+||.|+|+..+  ...++++.--+.|..-||..++..-      .+.+.++...+.+++.
T Consensus         7 G~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~   67 (344)
T cd01316           7 GLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAK   67 (344)
T ss_pred             CeEEeeeccCCCCcCCcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccC
Confidence            379999999753  3457888888899999999887752      2345556666666653

Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.

>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate []

Probab=96.24  E-value=0.004  Score=42.06  Aligned_cols=54  Identities=24%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             CceEeeccCCCCCcC-----CCCHHHHH--------HHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377            1 MKLFDAHCHLQDPRI-----FHKAPQLI--------ATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~-----~~~~~~~~--------~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      |++||-||||+..++     .+|+.+++        +.++.+||..-...| +..+.++-.++++..|
T Consensus        26 lPIiD~H~HL~p~~i~en~~f~~i~elwl~~DHYkwR~mra~Gv~E~~itg-~a~~~ekF~a~a~~~~   92 (462)
T PF02614_consen   26 LPIIDYHCHLDPKEIAENRLFGNITELWLYGDHYKWRAMRANGVPEEFITG-DASPREKFRAWAETVP   92 (462)
T ss_dssp             S-EEESS-S--HHHHHCTSB-SSHHHHHTSTTHHHHHHHHHTT-HGGGTTC-SSSHHHHHHHHHHHGG
T ss_pred             CCEeCCCCCCChHHHhhcCCCCCHHHHhccCchhHHHHHHHcCCCccccCC-CCCCHHHHHHHHHhhh
Confidence            679999999985333     24455544        467889997544455 4456666666777654

; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....

>PRK02925 glucuronate isomerase; Reviewed

Probab=96.20  E-value=0.0043  Score=41.95  Aligned_cols=55  Identities=22%  Similarity=0.381  Sum_probs=35.8

Q ss_pred             CceEeeccCCCCCcCC-----CCHHHHH--------HHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC
Q 035377            1 MKLFDAHCHLQDPRIF-----HKAPQLI--------ATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS   56 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~-----~~~~~~~--------~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~   56 (66)
                      |++||-||||+..++.     +|+.++.        +.++.+||.-=.+.| +..+.++-.++++..|.
T Consensus        26 lPIiDyH~Hl~p~~iaen~~F~n~telwl~gDHYkwR~Mra~GV~e~~ITg-~as~~ekf~~~a~t~p~   93 (466)
T PRK02925         26 LPIIDYHCHLDPKEIAENKPFKNITELWLKGDHYKWRAMRSNGVDEELITG-DASDREKFRAWAKTVPL   93 (466)
T ss_pred             CceeCCCCCCCHHHHhccCCCCCHHHHhccCccHHHHHHHHcCCCHHHccC-CCCHHHHHHHHHHhhhh
Confidence            6799999999754332     4555554        467889997422233 44566666777776654

>PRK09532 DNA polymerase III subunit alpha; Reviewed

Probab=96.16  E-value=0.04  Score=39.88  Aligned_cols=62  Identities=15%  Similarity=0.178  Sum_probs=41.4

Q ss_pred             CceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377            1 MKLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         1 m~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      |+++|.|+|-...  .-...+++++++|++.|+..+.++=. +.....+..+.+++. ++.+-+|+
T Consensus         1 m~Fv~LH~HS~ySlLdg~~~~~elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~-gik~I~G~   65 (874)
T PRK09532          1 MSFVGLHIHSDYSLLDGASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNK-GIKPIIGN   65 (874)
T ss_pred             CCccccccCCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHc-CCeEEEEE
Confidence            7899999998654  22347999999999999997644321 233334455556654 56666664

>PRK07135 dnaE DNA polymerase III DnaE; Validated

Probab=95.95  E-value=0.06  Score=39.47  Aligned_cols=62  Identities=15%  Similarity=0.202  Sum_probs=42.1

Q ss_pred             CceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeec-cChhhHHHHHHHHHhCCCeEeeeee
Q 035377            1 MKLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNG-VSEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      |.++|.|||-...-+  ...+++++++|++.|+..+.++= .+.....+..+.+++. ++.+-.|+
T Consensus         1 m~fv~LHvHS~ySlLDg~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~-gIkpIiG~   65 (973)
T PRK07135          1 MKLINLHTNTEYSFLSSTIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKN-NIKPIIGL   65 (973)
T ss_pred             CCccccccCccCcccccCCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHc-CCeEEEeE
Confidence            678999999875422  34799999999999998765431 1334445555666664 56666664

>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids

Probab=95.93  E-value=0.061  Score=34.54  Aligned_cols=36  Identities=22%  Similarity=0.243  Sum_probs=28.0

Q ss_pred             ceEeeccCCCCCc---CCCCHHHHHHHHHhcCCcEEEee
Q 035377            2 KLFDAHCHLQDPR---IFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         2 ~~iDsH~Hl~~~~---~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      .+||.|+|+..+.   ..++++.--+.|..-||..++..
T Consensus         6 G~iD~HvH~r~pg~~~~~e~~~t~t~aA~~GG~Ttv~~m   44 (337)
T cd01302           6 GFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDM   44 (337)
T ss_pred             CeeEeeeccCCCCCCCchhHHHHHHHHHHhCCCcEEEEC
Confidence            3799999997544   34677778888888999987764

Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.

>PRK04250 dihydroorotase; Provisional

Probab=95.92  E-value=0.028  Score=37.08  Aligned_cols=53  Identities=17%  Similarity=0.206  Sum_probs=34.9

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHhC
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSERH   54 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~~   54 (66)
                      .+||+|+|+....  ..+++....+.+...|+..++....      +.+.++...+++++.
T Consensus        48 G~ID~HvH~~~~~~~~~e~~~~~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~  108 (398)
T PRK04250         48 GLIDVHVHLRDFEESYKETIESGTKAALHGGITLVFDMPNTKPPIMDEKTYEKRMRIAEKK  108 (398)
T ss_pred             CEEeccccccCCCCCcHHHHHHHHHHHHhCCeEEEEECCCCCCCCCcHHHHHHHHHHhCcC
Confidence            3899999995322  2345667778888899988776532      244555556666554

>PRK07374 dnaE DNA polymerase III subunit alpha; Validated

Probab=95.82  E-value=0.071  Score=39.78  Aligned_cols=62  Identities=13%  Similarity=0.179  Sum_probs=42.3

Q ss_pred             CceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377            1 MKLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      |+++|.|+|-...-+  ...+++++++|++.|+..+.++-- +.....+..+.+++. +|.+.+|+
T Consensus         1 m~fv~LHvHS~ySlLdg~~~i~elv~~A~~~G~~alAiTDh~~l~G~~~f~~~~~~~-gIkpIiG~   65 (1170)
T PRK07374          1 MAFVPLHNHSDYSLLDGASQLPKMVERAKELGMPAIALTDHGVMYGAIELLKLCKGK-GIKPIIGN   65 (1170)
T ss_pred             CCcccccccCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCchHHHHHHHHHHHHc-CCeEEEEe
Confidence            789999999875422  347999999999999997755422 234444445555553 56666664

>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=95.82  E-value=0.032  Score=35.33  Aligned_cols=40  Identities=23%  Similarity=0.212  Sum_probs=26.1

Q ss_pred             eEeeccCCCCCcCCCC-------------HHHHHHHHHhcCCcEEEeeccChh
Q 035377            3 LFDAHCHLQDPRIFHK-------------APQLIATTVNSGVLHFAVNGVSEE   42 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~-------------~~~~~~~~~~~gv~~~~~~~~~~~   42 (66)
                      +||+|+|+.......+             ...-.+++...||..+..+|....
T Consensus        15 liD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~~~   67 (342)
T cd01299          15 LIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAGGADY   67 (342)
T ss_pred             eeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCcch
Confidence            8999999964221111             113466778899999988875433

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase

Probab=95.81  E-value=0.042  Score=36.15  Aligned_cols=63  Identities=14%  Similarity=0.104  Sum_probs=37.4

Q ss_pred             ceEeeccCCCCC-cCC----CCHHHHHHHHHhcCCcEEEeec--cChhhHHHHHHHHHhC---CCeEeeeeec
Q 035377            2 KLFDAHCHLQDP-RIF----HKAPQLIATTVNSGVLHFAVNG--VSEEDWNLVKDMSERH---PSVIPCFGVH   64 (66)
Q Consensus         2 ~~iDsH~Hl~~~-~~~----~~~~~~~~~~~~~gv~~~~~~~--~~~~~~~~~~~l~~~~---~~i~~~~GiH   64 (66)
                      .+||+|+|.... .+.    ++++...+.+.+.||..++...  ...++..++++..+++   +.-...+|+|
T Consensus        57 GfID~HvHg~~g~~~~~~~~e~~~~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~H  129 (380)
T TIGR00221        57 GFIDIHIHGCGGVDTNDASFETLEIMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALGLH  129 (380)
T ss_pred             ceeeeeeccccCcCCCCCCHHHHHHHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEe
Confidence            389999997431 122    3566777888889998876433  2345555555443331   1223457777

>PRK07945 hypothetical protein; Provisional

Probab=95.79  E-value=0.079  Score=34.35  Aligned_cols=61  Identities=18%  Similarity=0.116  Sum_probs=40.5

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeec----------cChhh----HHHHHHHHHhCCCeEeeeee
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNG----------VSEED----WNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~----------~~~~~----~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      ..|.|+|-....-...+++++++|.+.|++.+...-          .+.++    +..+.++.++|+.+..-.|+
T Consensus        97 ~~D~H~HT~~Sdg~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~Gi  171 (335)
T PRK07945         97 RGDLHTHSDWSDGGSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGI  171 (335)
T ss_pred             hhhcccccCCCCCCCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEe
Confidence            479999987654456799999999999999765431          11222    33455667778765544443

>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide

Probab=95.77  E-value=0.038  Score=38.36  Aligned_cols=47  Identities=19%  Similarity=0.291  Sum_probs=32.2

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccCh-------------hhHHHHHHHHHhCC
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSE-------------EDWNLVKDMSERHP   55 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~-------------~~~~~~~~l~~~~~   55 (66)
                      .+||+|+|+..+.       ..+.|...||..++..|+.+             +.+++.++.+++.|
T Consensus       130 G~ID~HvH~~~P~-------~~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~~p  189 (567)
T cd00375         130 GGIDTHVHFICPQ-------QIEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLP  189 (567)
T ss_pred             ceEECccCCCCcc-------HHHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhcCC
Confidence            3899999986433       24677888999888753333             55666666666655

Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.

>PRK01211 dihydroorotase; Provisional

Probab=95.63  E-value=0.072  Score=35.38  Aligned_cols=52  Identities=10%  Similarity=0.001  Sum_probs=36.2

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec-c-----ChhhHHHHHHHHHh
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG-V-----SEEDWNLVKDMSER   53 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~-~-----~~~~~~~~~~l~~~   53 (66)
                      .+||.|+|+..+.  ..+|+..--+.|..-||..++..- +     +.+.++...+.+++
T Consensus        47 G~ID~HvH~r~pg~~~ked~~s~s~AAaaGGvTtv~dmPnt~P~~~~~e~~~~~~~~a~~  106 (409)
T PRK01211         47 AATDIHVHFRTPGETEKEDFSTGTLSAIFGGTTFIMDMPNNNIPIKDYNAFSDKLGRVAP  106 (409)
T ss_pred             CeEEeeeccCCCCCcccCcHHHHHHHHHcCCcEEEEECCCCCCCCChHHHHHHHHHHhcc
Confidence            3899999997633  467888888888889999877642 2     34445555555544

>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]

Probab=95.60  E-value=0.027  Score=35.28  Aligned_cols=34  Identities=15%  Similarity=0.063  Sum_probs=27.2

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEE
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHF   34 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~   34 (66)
                      |+.+|.|||-..+.-...+.+++++|.+.|+..+
T Consensus         1 ~~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vl   34 (258)
T COG0613           1 WMKADLHVHTTASDGGLTPREVVERAKAKGVDVL   34 (258)
T ss_pred             CcceeeeEecccCCCCCCHHHHHHHHHHcCCCEE
Confidence            5679999998754434458999999999999844

>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]

Probab=95.53  E-value=0.013  Score=39.45  Aligned_cols=54  Identities=22%  Similarity=0.422  Sum_probs=35.3

Q ss_pred             CceEeeccCCCCCcCC-----CCHHHHH--------HHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377            1 MKLFDAHCHLQDPRIF-----HKAPQLI--------ATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~-----~~~~~~~--------~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      |+|||-|||++..++.     +|+-++.        +.++.+||..-.+.| +-++-++-+.+++.+|
T Consensus        25 lPIidpH~Hl~P~~i~en~~F~d~t~l~l~~DHY~wRmmrs~GV~e~~itg-d~sdrEkw~afa~~~~   91 (463)
T COG1904          25 LPIIDPHCHLEPQEIAENEAFPDPTSLWLKGDHYKWRMMRSNGVAERLITG-DTSDREKWRAFAKTVP   91 (463)
T ss_pred             CCeeCCcCCCCHHHHhhcCCCCCHHHHhhcccHHHHHHHHHcCCchhhcCC-CCChHHHHHHHHHhhh
Confidence            6899999999853332     3333332        456788998655556 5566666667777665

>PRK09059 dihydroorotase; Validated

Probab=95.49  E-value=0.1  Score=34.71  Aligned_cols=62  Identities=15%  Similarity=0.151  Sum_probs=38.1

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHhC--CCeEeeeee
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSERH--PSVIPCFGV   63 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~~--~~i~~~~Gi   63 (66)
                      .+||+|+|+..+.  ..++++...+.+...||..++....      +.+.++..++.+++.  -++++..++
T Consensus        61 G~ID~HvH~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~  132 (429)
T PRK09059         61 GLVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAI  132 (429)
T ss_pred             cEEecccccCCCCchhhhhHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEE
Confidence            3899999996422  2356666777888899998776432      234455556665543  235544444

>PRK10027 cryptic adenine deaminase; Provisional

Probab=95.48  E-value=0.078  Score=36.91  Aligned_cols=55  Identities=15%  Similarity=0.207  Sum_probs=37.5

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe-------eccChhhHHHHHHHHHhCCC-eEe
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV-------NGVSEEDWNLVKDMSERHPS-VIP   59 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~-------~~~~~~~~~~~~~l~~~~~~-i~~   59 (66)
                      .+||+|+|+...-.  ..+++.+.+...|+..++.       ++ +.+..+..++.+++-|. +|+
T Consensus        85 GlIDaHvHiess~~--~p~~~a~aal~~G~TtVv~dPhei~nv~-g~~gi~~~l~~a~~~p~~~~~  147 (588)
T PRK10027         85 GFIDAHLHIESSMM--TPVTFETATLPRGLTTVICDPHEIVNVM-GEAGFAWFARCAEQARQNQYL  147 (588)
T ss_pred             CeEeccccCCcccC--CHhHHHHHHHhCceEEEEcCCCCcccCC-CHHHHHHHHHHhhhCCCeeEE
Confidence            38999999975432  4566677778889988765       22 45666777777776664 444

>TIGR01178 ade adenine deaminase

Probab=95.39  E-value=0.075  Score=36.64  Aligned_cols=56  Identities=18%  Similarity=0.306  Sum_probs=36.2

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe------eccChhhHHHHHHHHHhCCC-eEe
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV------NGVSEEDWNLVKDMSERHPS-VIP   59 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~------~~~~~~~~~~~~~l~~~~~~-i~~   59 (66)
                      .+||+|+|+.....  ..++..+.+...|+..++.      .....+.++..++.+++.|- +|.
T Consensus        51 G~ID~H~Hi~~~~~--~~~~~~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~  113 (552)
T TIGR01178        51 GFIDAHIHIESSML--TPSEFAKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYF  113 (552)
T ss_pred             CeEecccccCCCCC--ChhHHHHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEE
Confidence            38999999975433  2345566677789887764      12356667777777666552 443

The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.

>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family

Probab=95.30  E-value=0.16  Score=31.47  Aligned_cols=33  Identities=12%  Similarity=0.117  Sum_probs=25.7

Q ss_pred             EeeccCCCCC-cCCCCHHHHHHHHHhcCCcEEEe
Q 035377            4 FDAHCHLQDP-RIFHKAPQLIATTVNSGVLHFAV   36 (66)
Q Consensus         4 iDsH~Hl~~~-~~~~~~~~~~~~~~~~gv~~~~~   36 (66)
                      +|.|+|.... .-.+.+++++++|.+.|++.+..
T Consensus         1 ~D~H~Ht~~s~d~~~~~ee~v~~A~~~Gl~~i~~   34 (253)
T TIGR01856         1 RDGHSHSPFCAHGTDTLEEVVQEAIQLGFEEICF   34 (253)
T ss_pred             CCcccCcCCCCCCCCCHHHHHHHHHHcCCCEEEe
Confidence            4889998643 23457999999999999997654

This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.

>PRK06826 dnaE DNA polymerase III DnaE; Reviewed

Probab=95.30  E-value=0.16  Score=37.96  Aligned_cols=62  Identities=15%  Similarity=0.186  Sum_probs=39.8

Q ss_pred             CceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377            1 MKLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      |+++|.|+|-...-+  ...+++++++|++.|+..+.++-- +.....+..+.+++. ++.+-+|+
T Consensus         3 m~fvdLHvHT~yS~ldg~~~~~elv~~A~e~G~~avAITDH~~~~g~~~f~~~a~~~-gIkpIiG~   67 (1151)
T PRK06826          3 MSFVHLHVHTEYSLLDGSARIKDLIKRAKELGMDSIAITDHGVMYGVVDFYKAAKKQ-GIKPIIGC   67 (1151)
T ss_pred             CcceeccccccCChhhhcCCHHHHHHHHHHCCCCEEEEecCCchHhHHHHHHHHHhC-CCEEEEEE
Confidence            458999999865422  347999999999999997754321 223333444555554 46665554

>PRK00369 pyrC dihydroorotase; Provisional

Probab=95.23  E-value=0.12  Score=34.09  Aligned_cols=52  Identities=17%  Similarity=0.051  Sum_probs=35.7

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHh
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSER   53 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~   53 (66)
                      .+||.|+|+..+.  ..++++.--..|..-||..++.+..      +.+.++...+.+++
T Consensus        48 G~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~l~~~~~~a~~  107 (392)
T PRK00369         48 GAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMPNTIPPLNTPEAITEKLAELEY  107 (392)
T ss_pred             CEEEcccccCCCCCcccccHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCc
Confidence            3899999997533  4578888888889999998876532      23444444555544

>PRK09236 dihydroorotase; Reviewed

Probab=95.21  E-value=0.14  Score=34.07  Aligned_cols=37  Identities=16%  Similarity=0.305  Sum_probs=27.9

Q ss_pred             ceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+.....  .+++....+.+...||..++..+
T Consensus        55 G~ID~HvH~~~~~~~~~e~~~~~~~aa~~~GvTtv~d~p   93 (444)
T PRK09236         55 GMIDDQVHFREPGLTHKGDIASESRAAVAGGITSFMEMP   93 (444)
T ss_pred             CEEEcccccccCcccccccHHHHHHHHHhCCcEEEEeCC
Confidence            38999999864322  35666777888999999888765

>PRK06189 allantoinase; Provisional

Probab=94.90  E-value=0.14  Score=34.07  Aligned_cols=52  Identities=13%  Similarity=0.245  Sum_probs=35.1

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec--c-----ChhhHHHHHHHHHh
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG--V-----SEEDWNLVKDMSER   53 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~--~-----~~~~~~~~~~l~~~   53 (66)
                      .+||+|+|+..+.  ..+++....+.+...||..++...  +     +.+.+....++++.
T Consensus        55 G~ID~H~H~~~~~~~~~~~~~~~~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~  115 (451)
T PRK06189         55 GMIDVHVHFNEPGRTHWEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQ  115 (451)
T ss_pred             CEEEeeeccCCCCCCCcccHHHHHHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCc
Confidence            3899999997532  245777777888889998877542  2     34456566666654

>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B

Probab=94.81  E-value=0.028  Score=28.04  Aligned_cols=30  Identities=27%  Similarity=0.392  Sum_probs=16.1

Q ss_pred             eEeeccCCCCCcC-CCCHHHHHHHHHhcCCc
Q 035377            3 LFDAHCHLQDPRI-FHKAPQLIATTVNSGVL   32 (66)
Q Consensus         3 ~iDsH~Hl~~~~~-~~~~~~~~~~~~~~gv~   32 (66)
                      |||+|+|+..... ..+.+.....+.+.||.
T Consensus        36 ~ID~H~H~~~~~~~~~~~~~~~~~~l~~GvT   66 (68)
T PF13594_consen   36 FIDMHTHLGEPGWQSLDPETEAAAALAGGVT   66 (68)
T ss_dssp             EEEEEE-TTTTCEGGCTCHHHHHHHHHTTEE
T ss_pred             eEeeeeccccccccccchhhHHHHHHCccee
Confidence            8999999873221 22334444444466653

...

>PRK02382 dihydroorotase; Provisional

Probab=94.80  E-value=0.16  Score=33.74  Aligned_cols=52  Identities=15%  Similarity=0.178  Sum_probs=33.9

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHh
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSER   53 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~   53 (66)
                      .+||+|+|+....  ..+++....+.+...||..++....      +.+.++...+.+++
T Consensus        55 G~ID~H~H~~~~g~~~~e~~~~~~~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~  114 (443)
T PRK02382         55 GGIDVHVHFREPGYTHKETWYTGSRSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAAR  114 (443)
T ss_pred             CEeeeeeeccCCCCCchhhHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCc
Confidence            3899999986532  2356677778888899988775432      23345555555544

>PRK13308 ureC urease subunit alpha; Reviewed

Probab=94.74  E-value=0.1  Score=36.32  Aligned_cols=47  Identities=17%  Similarity=0.269  Sum_probs=30.5

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEee---------ccChhhHHHHHHHHHhCC
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN---------GVSEEDWNLVKDMSERHP   55 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~---------~~~~~~~~~~~~l~~~~~   55 (66)
                      .+||+|+|+..+.       ..+.|...||..++.-         ...++.++..++.++..|
T Consensus       134 G~ID~HVH~~~Pg-------~~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~p  189 (569)
T PRK13308        134 GAIDVHVHFDSAQ-------LVDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWP  189 (569)
T ss_pred             CEEEeeeCCCCcc-------HHHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCC
Confidence            3899999986532       2267788899888752         223455666666666554

>PRK07627 dihydroorotase; Provisional

Probab=94.71  E-value=0.23  Score=33.03  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=27.9

Q ss_pred             ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEee
Q 035377            2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      .+||.|+|+..+  ...++++...+.|...||..++..
T Consensus        56 G~iD~H~H~~~~g~~~~e~~~t~s~aa~~gGvTtv~~~   93 (425)
T PRK07627         56 GLVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVCP   93 (425)
T ss_pred             cEEeccccccCCCccccCcHHHHHHHHHhCCeeEEEeC
Confidence            389999999543  235678888899999999987743

>PRK05588 histidinol-phosphatase; Provisional

Probab=94.61  E-value=0.079  Score=32.75  Aligned_cols=32  Identities=19%  Similarity=0.200  Sum_probs=25.4

Q ss_pred             eEeeccCCCCC-cCCCCHHHHHHHHHhcCCcEE
Q 035377            3 LFDAHCHLQDP-RIFHKAPQLIATTVNSGVLHF   34 (66)
Q Consensus         3 ~iDsH~Hl~~~-~~~~~~~~~~~~~~~~gv~~~   34 (66)
                      ++|.|+|.... .-.+.+++.+++|.+.|++.+
T Consensus         1 ~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~~   33 (255)
T PRK05588          1 MFDTHIHTEFSTDSKMKIEEAIKKAKENNLGII   33 (255)
T ss_pred             CeeecccCCCCCCcccCHHHHHHHHHHcCCCEE
Confidence            48999998653 334579999999999999844

>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type

Probab=94.41  E-value=0.3  Score=32.15  Aligned_cols=36  Identities=22%  Similarity=0.268  Sum_probs=26.0

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEee
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      .+||.|+|+....  ..+++....+.+...|+..++..
T Consensus        40 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~   77 (411)
T TIGR00857        40 GFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADM   77 (411)
T ss_pred             CEEEcccCCCCCCCccHhHHHHHHHHHHhCCeEEEEEe
Confidence            3899999996421  23456667778888999987764

All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.

>PRK13404 dihydropyrimidinase; Provisional

Probab=94.36  E-value=0.28  Score=33.06  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=28.3

Q ss_pred             ceEeeccCCCCC-----cCCCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDP-----RIFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~-----~~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+..+     .+.+++......+...||..++..+
T Consensus        55 G~ID~H~H~~~~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~~   96 (477)
T PRK13404         55 GGVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPFA   96 (477)
T ss_pred             CEEEeEEcCCccccCCccccchHHHHHHHHHcCCccEEEEcc
Confidence            389999999542     2346777888888899999888755

>PRK08044 allantoinase; Provisional

Probab=94.24  E-value=0.24  Score=33.09  Aligned_cols=52  Identities=15%  Similarity=0.236  Sum_probs=37.2

Q ss_pred             eEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec--c-----ChhhHHHHHHHHHhC
Q 035377            3 LFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG--V-----SEEDWNLVKDMSERH   54 (66)
Q Consensus         3 ~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~--~-----~~~~~~~~~~l~~~~   54 (66)
                      +||.|+|+..+  ...+++....+.+...||..++..+  +     +.+.++...+.+++.
T Consensus        55 ~iD~h~h~~~~~~~~~e~~~~~~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~  115 (449)
T PRK08044         55 MVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGK  115 (449)
T ss_pred             eeccccccCCCCccccccHHHHHHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccC
Confidence            79999999642  2356788888999999999888765  1     345555556655543

>PLN02795 allantoinase

Probab=94.19  E-value=0.17  Score=34.36  Aligned_cols=37  Identities=22%  Similarity=0.359  Sum_probs=26.1

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+..+.  ..++.....+.+...||..++..-
T Consensus       100 G~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTtv~dmp  138 (505)
T PLN02795        100 GLIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMP  138 (505)
T ss_pred             CEEecccCcCCCCccchhHHHHHHHHHHcCCcEEEECCC
Confidence            3899999997533  234566666777778998877654

>PRK09357 pyrC dihydroorotase; Validated

Probab=94.01  E-value=0.53  Score=30.93  Aligned_cols=37  Identities=19%  Similarity=0.209  Sum_probs=26.4

Q ss_pred             ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+..+  ...+++....+.+...||..++...
T Consensus        54 G~ID~H~H~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~   92 (423)
T PRK09357         54 GLVDLHVHLREPGQEDKETIETGSRAAAAGGFTTVVAMP   92 (423)
T ss_pred             CEEecccccCCCCccccccHHHHHHHHHhCCCeEEEecC
Confidence            389999998542  2235666666777888998887654

>PRK09060 dihydroorotase; Validated

Probab=93.98  E-value=0.31  Score=32.51  Aligned_cols=52  Identities=13%  Similarity=0.068  Sum_probs=34.3

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHh
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSER   53 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~   53 (66)
                      .+||+|+|+..+.  ..+++....+.+...||..++....      +.+.+...++.+++
T Consensus        57 G~ID~HvH~~~~~~~~~e~~~t~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~  116 (444)
T PRK09060         57 GVIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARH  116 (444)
T ss_pred             CEEeccccccCCCCCccchHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcc
Confidence            3899999986432  2357778888889999998776432      23445444554443

>PRK07575 dihydroorotase; Provisional

Probab=93.96  E-value=0.32  Score=32.35  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=27.5

Q ss_pred             ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+...  ...+++....+.+...||..++...
T Consensus        57 G~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTt~~dmp   95 (438)
T PRK07575         57 GVIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMP   95 (438)
T ss_pred             cEEEeeeccCCCCCcCcchHHHHHHHHHhCCEEEEEECC
Confidence            389999998643  2345777778888889998877653

>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate

Probab=93.89  E-value=0.15  Score=33.23  Aligned_cols=45  Identities=13%  Similarity=0.157  Sum_probs=28.7

Q ss_pred             ceEeeccCCCC-CcC----CCCHHHHHHHHHhcCCcEEEeec--cChhhHHH
Q 035377            2 KLFDAHCHLQD-PRI----FHKAPQLIATTVNSGVLHFAVNG--VSEEDWNL   46 (66)
Q Consensus         2 ~~iDsH~Hl~~-~~~----~~~~~~~~~~~~~~gv~~~~~~~--~~~~~~~~   46 (66)
                      .+||+|+|... ..+    .+++....+.+.+.||..++...  ..++...+
T Consensus        52 G~iD~H~H~~~g~~~~~~~~e~~~~~~~~~~~~GvTtv~~t~~t~~~~~~~~  103 (374)
T cd00854          52 GFIDIHIHGGGGADFMDGTAEALKTIAEALAKHGTTSFLPTTVTAPPEEIAK  103 (374)
T ss_pred             cEEEeeecccCCCCCCCCCHHHHHHHHHHHHccCcceeeccccCCCHHHHHH
Confidence            38999999853 112    13456667788889999877654  23444433

This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.

>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology)

Probab=93.87  E-value=0.39  Score=31.72  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=27.2

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+..+.  ..+++...-+.+...||..++...
T Consensus        53 G~ID~H~H~~~~~~~~~e~~~~~s~aal~gGvTtv~d~p   91 (447)
T cd01315          53 GLIDTHVHINEPGRTEWEGFETGTKAAAAGGITTIIDMP   91 (447)
T ss_pred             cEeeceeccCCCCccccccHHHHHHHHHhCCceEEEeCC
Confidence            3899999997432  235666677778889999887764

But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.

>PRK08417 dihydroorotase; Provisional

Probab=93.84  E-value=0.2  Score=32.85  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=28.1

Q ss_pred             ceEeeccCCCCCcC-CCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDPRI-FHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~-~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||.|+|+..+.+ .++++...+.|...||..++.+.
T Consensus        31 G~ID~HvH~~~~~~~~e~~~t~s~aA~aGGvTtv~dmp   68 (386)
T PRK08417         31 ALVDLNVSLKNDSLSSKNLKSLENECLKGGVGSIVLYP   68 (386)
T ss_pred             CeeEEeeeeCCCCcChhhHHHHHHHHHcCCcEEEEeCC
Confidence            38999999965322 35677788888889999887764

>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional

Probab=93.82  E-value=0.44  Score=31.42  Aligned_cols=62  Identities=13%  Similarity=0.072  Sum_probs=34.2

Q ss_pred             eEeeccCCCC-CcCC--------CCHHHHHHHHHhcCCcEEEeec--cChhhHHHHHHHHHhC--CCeEeeeeec
Q 035377            3 LFDAHCHLQD-PRIF--------HKAPQLIATTVNSGVLHFAVNG--VSEEDWNLVKDMSERH--PSVIPCFGVH   64 (66)
Q Consensus         3 ~iDsH~Hl~~-~~~~--------~~~~~~~~~~~~~gv~~~~~~~--~~~~~~~~~~~l~~~~--~~i~~~~GiH   64 (66)
                      +||+|+|... ..+.        +.++.+.+.+.+.|+..++-..  ...++..++++..+++  ++-...+|+|
T Consensus        55 ~ID~HvHG~~g~~~~~~~~~~~~~~l~~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G~H  129 (382)
T PRK11170         55 FIDLQLNGCGGVQFNDTAEAISVETLEIMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLH  129 (382)
T ss_pred             eeeeeecCccCcccccCccCCCHHHHHHHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            8999999642 1111        2344444556788999877433  2445555554443332  1223467777

>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type

Probab=93.69  E-value=0.6  Score=35.26  Aligned_cols=54  Identities=9%  Similarity=0.128  Sum_probs=38.8

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCC
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHP   55 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~   55 (66)
                      +.+|.|+|-....  -...+++++++|.+.|+..+.++=- +...+..+.+.+++++
T Consensus       103 krvDLH~HT~~S~~Dg~~~~~elv~~A~~~Gl~aiAITDH~~~~~~~~~~~~~~~~~  159 (1213)
T TIGR01405       103 KRVELHFHTKMSQMDAITSVQEYVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKDG  159 (1213)
T ss_pred             ceEEeeeCccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCccCHHHHHHHHHhcC
Confidence            4689999986542  2347999999999999997654321 3556777777777753

The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.

>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []

Probab=93.68  E-value=0.046  Score=34.04  Aligned_cols=37  Identities=19%  Similarity=0.148  Sum_probs=26.3

Q ss_pred             ceEeeccCCCCCcCC---------CCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDPRIF---------HKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~---------~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+....+.         .......+++.+.|+..++..+
T Consensus         5 GlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~   50 (333)
T PF01979_consen    5 GLIDAHVHGGQGGLRGLLDPEDHYESIRTGAKAALKGGVTTVLDTP   50 (333)
T ss_dssp             -EEEEEEEGGGTTHTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             ChhHHhhCcCCcCccccCCHHHHHHHHHHHHHHHHhcCeEEEEcCc
Confidence            389999999754433         2345566788889999888763

The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....

>PRK05672 dnaE2 error-prone DNA polymerase; Validated

Probab=93.58  E-value=0.65  Score=34.54  Aligned_cols=61  Identities=11%  Similarity=0.161  Sum_probs=40.6

Q ss_pred             ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec-cChhhHHHHHHHHHhCCCeEeeeee
Q 035377            2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG-VSEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      .++|.|||-...  .-...+++++++|++.|...+.++= .+.....+..+.++++ ++.+-.|+
T Consensus         4 ~fv~LHvHT~ySlLdg~~~~~elv~~A~~~G~~avAiTDh~~l~g~~~f~~~~~~~-gIkpI~G~   67 (1046)
T PRK05672          4 PYAELHCHSNFSFLDGASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKEL-GLRLVIGA   67 (1046)
T ss_pred             ceeeccccccCcccccCCCHHHHHHHHHHcCCCEEEEEeCCcchhHHHHHHHHHHC-CCEEEEEE
Confidence            478999997653  2234799999999999998765432 1344445555666665 46666654

>PRK08323 phenylhydantoinase; Validated

Probab=93.47  E-value=0.56  Score=31.06  Aligned_cols=37  Identities=14%  Similarity=0.062  Sum_probs=25.8

Q ss_pred             ceEeeccCCCCC----cCCCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDP----RIFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~----~~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+..+    ...++.....+.+...||..++...
T Consensus        50 GlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~   90 (459)
T PRK08323         50 GGIDPHTHMEMPFGGTVSSDDFETGTRAAACGGTTTIIDFA   90 (459)
T ss_pred             cEEeeeeccccccCCccccCcHHHHHHHHHhCCCCEEEeCc
Confidence            389999999642    1234565556677788999887654

>PRK05673 dnaE DNA polymerase III subunit alpha; Validated

Probab=93.44  E-value=0.57  Score=35.10  Aligned_cols=61  Identities=13%  Similarity=0.145  Sum_probs=40.1

Q ss_pred             ceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377            2 KLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      .++|.|+|-...-+  ...+++++++|++.|+..+.++-- +.....+..+.+++. +|.+-+|+
T Consensus         1 ~fv~LHvHS~ySlLdg~~~i~elv~~A~e~G~~avAiTDH~~l~g~~~f~~~a~~~-gIkpIiG~   64 (1135)
T PRK05673          1 RFVHLHVHSEYSLLDGAAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGA-GIKPIIGC   64 (1135)
T ss_pred             CcccceecccCchhhhcCCHHHHHHHHHHcCCCEEEEEcCCccHHHHHHHHHHHHc-CCeEEEEE
Confidence            37899999865322  347999999999999997754321 233444445555654 56666664

>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]

Probab=93.39  E-value=0.52  Score=27.22  Aligned_cols=52  Identities=10%  Similarity=0.097  Sum_probs=38.4

Q ss_pred             ceEeeccCCCCCc-------------CCCCHHHHHHHHHhcCCcEEEee-ccChhhHHHHHHHHHh
Q 035377            2 KLFDAHCHLQDPR-------------IFHKAPQLIATTVNSGVLHFAVN-GVSEEDWNLVKDMSER   53 (66)
Q Consensus         2 ~~iDsH~Hl~~~~-------------~~~~~~~~~~~~~~~gv~~~~~~-~~~~~~~~~~~~l~~~   53 (66)
                      .++|+|.|....+             ++.|...+|...++.||.-+++. +.+++...+.+++.+.
T Consensus        19 ~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkv   84 (144)
T KOG4549|consen   19 RLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKV   84 (144)
T ss_pred             EEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhcc
Confidence            3799999975432             35778899999999999876543 4577777777776553

>PRK00448 polC DNA polymerase III PolC; Validated

Probab=93.25  E-value=0.63  Score=35.72  Aligned_cols=54  Identities=11%  Similarity=0.142  Sum_probs=39.4

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec-cChhhHHHHHHHHHhCC
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG-VSEEDWNLVKDMSERHP   55 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~   55 (66)
                      +.||.|+|-....  -...+++++++|.+.|+..+.++= .+...+..+.+.+++++
T Consensus       333 KrvdLH~HT~~S~~Dg~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~g  389 (1437)
T PRK00448        333 KRVELHLHTKMSTMDAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAG  389 (1437)
T ss_pred             ceEEecccccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhcC
Confidence            5799999987653  334799999999999999764431 13556777777777764

>TIGR00594 polc DNA-directed DNA polymerase III (polc)

Probab=93.24  E-value=0.68  Score=34.34  Aligned_cols=60  Identities=13%  Similarity=0.118  Sum_probs=39.3

Q ss_pred             eEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377            3 LFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         3 ~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      ++|.|+|-...  .-...+++++++|++.|+..+.++-- +.....+..+.+++. +|.+-+|+
T Consensus         1 fv~LHvHS~yS~Ldg~~~~~elv~~A~~~G~~alAiTDH~~l~g~~~f~~~~~~~-gIkpI~G~   63 (1022)
T TIGR00594         1 FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEFYKACKKA-GIKPIIGC   63 (1022)
T ss_pred             CeeeeecccCccccccCCHHHHHHHHHHCCCCEEEEecCCCchhHHHHHHHHHHc-CCeEEEEE
Confidence            57899997643  22357999999999999998755421 233344445555553 56666664

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03178 allantoinase allantoinase

Probab=93.08  E-value=0.53  Score=31.25  Aligned_cols=37  Identities=14%  Similarity=0.277  Sum_probs=26.5

Q ss_pred             ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+...  ...+++....+.+...||..++...
T Consensus        52 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~gGvTtv~dmp   90 (443)
T TIGR03178        52 GVVDTHVHINEPGRTEWEGFETGTRAAAAGGITTYIDMP   90 (443)
T ss_pred             cEeccccccCCCCccccchHHHHHHHHHcCCeEEEEECC
Confidence            389999999642  2235666666777888998877754

This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.

>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin

Probab=92.79  E-value=0.47  Score=31.35  Aligned_cols=37  Identities=16%  Similarity=0.083  Sum_probs=25.1

Q ss_pred             ceEeeccCCCCCc----CCCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDPR----IFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~~----~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+...-    ..+++....+.+...||..++...
T Consensus        52 GlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTtv~d~~   92 (447)
T cd01314          52 GGIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFA   92 (447)
T ss_pred             CEEeccccccccccCccCcchHHHHHHHHHhCCCcEEEeCC
Confidence            3899999996421    234555555667778998887654

The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.

>PRK10657 isoaspartyl dipeptidase; Provisional

Probab=92.76  E-value=0.78  Score=29.68  Aligned_cols=36  Identities=11%  Similarity=0.127  Sum_probs=24.8

Q ss_pred             eEeeccCCCC----Cc-CCCCHHHHHHHHHhcCCcEEEeec
Q 035377            3 LFDAHCHLQD----PR-IFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         3 ~iDsH~Hl~~----~~-~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      +||+|+|+..    +. ...+.+....++...|+..++.+.
T Consensus        58 ~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvvd~~   98 (388)
T PRK10657         58 FIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVVGLL   98 (388)
T ss_pred             ceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEECCC
Confidence            8999999862    11 123455667888889998887654

>PRK13207 ureC urease subunit alpha; Reviewed

Probab=92.73  E-value=0.41  Score=33.44  Aligned_cols=31  Identities=29%  Similarity=0.417  Sum_probs=22.2

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccC
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVS   40 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~   40 (66)
                      +||+|+|+..+.       ..+.|...||..++..++.
T Consensus       131 ~ID~HvH~~~P~-------~~~aALagGVTTVi~mg~g  161 (568)
T PRK13207        131 GIDTHIHFICPQ-------QIEEALASGVTTMIGGGTG  161 (568)
T ss_pred             eEECccCCcccc-------HHHHHHcCCCCEEEcCCcC
Confidence            899999986432       1466778899888775443

>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []

Probab=92.60  E-value=0.6  Score=28.15  Aligned_cols=27  Identities=26%  Similarity=0.255  Sum_probs=16.5

Q ss_pred             EeeccCCCCCcCCCCHHHHHHHHHhcCCcE
Q 035377            4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLH   33 (66)
Q Consensus         4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~   33 (66)
                      ||+|+|+.   ........+....+.++..
T Consensus         1 ID~H~H~~---~~~~~~~~~~~~~~~~~~~   27 (273)
T PF04909_consen    1 IDAHIHLP---GEWDPEERLPEMDKQGVDR   27 (273)
T ss_dssp             EEEEEEEG---GGTCHHHHHHHHHHHTEEE
T ss_pred             CcCcccCC---CCcCchhhhhHHHhcCCch
Confidence            89999982   1234555566666666543

The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....

>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]

Probab=92.59  E-value=0.55  Score=30.01  Aligned_cols=59  Identities=7%  Similarity=-0.112  Sum_probs=42.2

Q ss_pred             cCCCCCc-CCCCHHHHHHHHHhcCCcEEEeeccCh----------hhHHHHHHHHHhC-CC-eEeeeeecCC
Q 035377            8 CHLQDPR-IFHKAPQLIATTVNSGVLHFAVNGVSE----------EDWNLVKDMSERH-PS-VIPCFGVHPW   66 (66)
Q Consensus         8 ~Hl~~~~-~~~~~~~~~~~~~~~gv~~~~~~~~~~----------~~~~~~~~l~~~~-~~-i~~~~GiHP~   66 (66)
                      .||.--. -...+.+.+..+.+.||+.+++++.++          .+...++++.+++ .+ ...+++.+|.
T Consensus        82 ~Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe  153 (291)
T COG0685          82 PHLTCRDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPE  153 (291)
T ss_pred             eeecccCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCC
Confidence            4665321 123577889999999999999887776          2566788888865 34 6668888884

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=91.97  E-value=1.2  Score=28.04  Aligned_cols=38  Identities=13%  Similarity=0.263  Sum_probs=28.2

Q ss_pred             CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377           18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus        18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      -.++.+++++++|+++++++...+++.+...+.++++.
T Consensus       105 G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~g  142 (258)
T PRK13111        105 GVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHG  142 (258)
T ss_pred             CHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcC
Confidence            46777888888888888777777777777777777664

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=91.95  E-value=0.89  Score=28.11  Aligned_cols=49  Identities=10%  Similarity=0.185  Sum_probs=25.2

Q ss_pred             CCCHHHHHHHHHhcCCcEEEeeccC---hhhHHHHHHHHHhCCCeEeeeeecC
Q 035377           16 FHKAPQLIATTVNSGVLHFAVNGVS---EEDWNLVKDMSERHPSVIPCFGVHP   65 (66)
Q Consensus        16 ~~~~~~~~~~~~~~gv~~~~~~~~~---~~~~~~~~~l~~~~~~i~~~~GiHP   65 (66)
                      ..+.++.++++.+.|++++++....   .++..+.++.++++ ++.+.+-++|
T Consensus        87 ~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~-Gl~~~~~v~p  138 (244)
T PRK13125         87 VDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNK-GLKPVFFTSP  138 (244)
T ss_pred             hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHc-CCCEEEEECC
Confidence            3455666666666666666554321   24444555555554 3444444444

>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=91.94  E-value=0.54  Score=30.05  Aligned_cols=36  Identities=22%  Similarity=0.207  Sum_probs=22.9

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+..+.. +..+..-+.|...||..++..+
T Consensus        35 G~iD~H~H~~~~g~-~~~~~~~~~a~~~GvTtvvd~~   70 (338)
T cd01307          35 GWIDLHVHVYQGGT-RYGDRPDMIGVKSGVTTVVDAG   70 (338)
T ss_pred             CeEEeeecCCCCCc-ccCCCHhHHHHcCceeEEEeCC
Confidence            38999999975432 1112233456778999887554

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>PLN02942 dihydropyrimidinase

Probab=91.87  E-value=1.7  Score=29.40  Aligned_cols=36  Identities=19%  Similarity=0.085  Sum_probs=24.5

Q ss_pred             ceEeeccCCCCCc----CCCCHHHHHHHHHhcCCcEEEee
Q 035377            2 KLFDAHCHLQDPR----IFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         2 ~~iDsH~Hl~~~~----~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      .+||+|+|+....    ..+++..--..|...|+..++..
T Consensus        58 G~ID~H~H~~~~~~~~~~~ed~~s~s~aAl~gGvTTv~D~   97 (486)
T PLN02942         58 GGIDPHTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDF   97 (486)
T ss_pred             CEeeeeeccCcccCCCcccchHHHHHHHHHcCCCeEEEeC
Confidence            3899999997542    23455555566777888877654

>PRK13985 ureB urease subunit beta; Provisional

Probab=91.85  E-value=0.43  Score=33.32  Aligned_cols=30  Identities=33%  Similarity=0.478  Sum_probs=20.9

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV   39 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~   39 (66)
                      +||+|+|+..+..       .+.|...||..++..|+
T Consensus       131 ~ID~HvH~~~P~~-------~~~AlagGVTTvI~~G~  160 (568)
T PRK13985        131 GIDTHIHFISPQQ-------IPTAFASGVTTMIGGGT  160 (568)
T ss_pred             EEEeeCCCCCccH-------HHHHhcCceEEEEccCc
Confidence            8999999854321       24577889988876433

>TIGR02033 D-hydantoinase D-hydantoinase

Probab=91.68  E-value=0.71  Score=30.46  Aligned_cols=38  Identities=16%  Similarity=0.101  Sum_probs=25.3

Q ss_pred             ceEeeccCCCCC---c-CCCCHHHHHHHHHhcCCcEEEeecc
Q 035377            2 KLFDAHCHLQDP---R-IFHKAPQLIATTVNSGVLHFAVNGV   39 (66)
Q Consensus         2 ~~iDsH~Hl~~~---~-~~~~~~~~~~~~~~~gv~~~~~~~~   39 (66)
                      .+||+|+|+...   . ..++.....+.+...||..++....
T Consensus        52 GlID~H~H~~~~~~~~~~~e~~~~~s~~a~~~GvTtv~d~~~   93 (454)
T TIGR02033        52 GGIDVHTHLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDFAL   93 (454)
T ss_pred             CEecceeccCcccCCCCCcchHHHHHHHHHhCCCCEEEeCcC
Confidence            389999999642   1 1234444456677789998877653

This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.

>PRK09237 dihydroorotase; Provisional

Probab=91.62  E-value=0.44  Score=30.89  Aligned_cols=50  Identities=16%  Similarity=0.203  Sum_probs=28.8

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHH
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSE   52 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~   52 (66)
                      .+||+|+|+.... .......-+.+...|+..++..+. .+.+.+...+...
T Consensus        54 G~iD~H~H~~~~~-~~~~~~~~~~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~  104 (380)
T PRK09237         54 GWIDLHVHVYPGS-TPYGDEPDEVGVRSGVTTVVDAGSAGADNFDDFRKLTI  104 (380)
T ss_pred             CEEEeeecCCCCC-CccCCCHHHHHHhCCcCEEEECCCCCCCCHHHHHHHHH
Confidence            3899999997421 111113335567889988776553 3444444444444

>PRK12394 putative metallo-dependent hydrolase; Provisional

Probab=91.55  E-value=0.75  Score=29.93  Aligned_cols=35  Identities=20%  Similarity=0.149  Sum_probs=21.4

Q ss_pred             ceEeeccCCCCCcCC--CCHHHHHHHHHhcCCcEEEeecc
Q 035377            2 KLFDAHCHLQDPRIF--HKAPQLIATTVNSGVLHFAVNGV   39 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~--~~~~~~~~~~~~~gv~~~~~~~~   39 (66)
                      .+||+|+|+......  .+.+   ..+...|+..++..|.
T Consensus        57 GliD~H~H~~~~g~~~~~~~~---~~~l~~G~Ttv~d~g~   93 (379)
T PRK12394         57 GLIDYHAHVFYDGTEGGVRPD---MYMPPNGVTTVVDAGS   93 (379)
T ss_pred             CEEEeeecCCCCCcccccCHH---HHHHhCCccEEEECCC
Confidence            389999998542211  1222   2356678888877664

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=91.44  E-value=1.4  Score=27.90  Aligned_cols=37  Identities=11%  Similarity=0.161  Sum_probs=24.1

Q ss_pred             CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377           18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH   54 (66)
Q Consensus        18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~   54 (66)
                      -.++.++++.++|+++++++-..+++..+..+.++++
T Consensus       107 G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~  143 (263)
T CHL00200        107 GINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLY  143 (263)
T ss_pred             CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHc
Confidence            3566677777777777766666666666666666655

>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]

Probab=91.13  E-value=2.1  Score=26.47  Aligned_cols=34  Identities=15%  Similarity=0.178  Sum_probs=27.4

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV   36 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~   36 (66)
                      .+|.|.|.....-..+..+.+++|.+.|.+.+..
T Consensus         2 ~~D~H~HT~~sdg~~~~~e~~~~A~~~g~~~~~i   35 (237)
T COG1387           2 KIDLHTHTVFSDGEATPEEMVEAAIELGLEYIAI   35 (237)
T ss_pred             CcccccCcccccCCCCHHHHHHHHHHcCCeEEEE
Confidence            4799999876554568888999999999987654

>PRK13309 ureC urease subunit alpha; Reviewed

Probab=91.07  E-value=0.6  Score=32.64  Aligned_cols=47  Identities=23%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccC-------------hhhHHHHHHHHHhCC
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVS-------------EEDWNLVKDMSERHP   55 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~-------------~~~~~~~~~l~~~~~   55 (66)
                      .+||+|+|+..+.+       .+.|...||..++..|+.             ...+++.++.+++.|
T Consensus       134 G~ID~HvH~~~P~~-------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~~p  193 (572)
T PRK13309        134 AGIDTHIHLISPQQ-------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEGLP  193 (572)
T ss_pred             CEEEeecccCCcch-------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhccCC
Confidence            37999999865432       246777898887743322             224556656666554

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=91.00  E-value=2.4  Score=26.03  Aligned_cols=56  Identities=14%  Similarity=0.229  Sum_probs=28.4

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhh-HHHHHHHHHhCCCeEeeeeecC
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEED-WNLVKDMSERHPSVIPCFGVHP   65 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~-~~~~~~l~~~~~~i~~~~GiHP   65 (66)
                      ++|.|.+.+      +.+..++.+.+.|+..+.+-+-.... ..+.++..++. +...++.+.|
T Consensus        67 ~lDvHLm~~------~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~-G~~~gval~p  123 (228)
T PTZ00170         67 FLDCHLMVS------NPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREA-GMKVGVAIKP  123 (228)
T ss_pred             CEEEEECCC------CHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHC-CCeEEEEECC
Confidence            468887743      35556666666666644333322222 44555555554 2334444444

>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family

Probab=90.92  E-value=2.1  Score=25.47  Aligned_cols=45  Identities=13%  Similarity=0.118  Sum_probs=32.0

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHH-HHHhCCCeEeeeeecC
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKD-MSERHPSVIPCFGVHP   65 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~-l~~~~~~i~~~~GiHP   65 (66)
                      ..++++++.+.| .++..+|..++..+++.+ +.++||++..+ |.|+
T Consensus        37 ~~~l~~~~~~~~-~~vfllG~~~~v~~~~~~~l~~~yP~l~i~-g~~g   82 (177)
T TIGR00696        37 MEELCQRAGKEK-LPIFLYGGKPDVLQQLKVKLIKEYPKLKIV-GAFG   82 (177)
T ss_pred             HHHHHHHHHHcC-CeEEEECCCHHHHHHHHHHHHHHCCCCEEE-EECC
Confidence            457888888888 457778999888777654 66779986533 4454

The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.

>PLN02591 tryptophan synthase

Probab=90.90  E-value=2  Score=27.01  Aligned_cols=38  Identities=16%  Similarity=0.238  Sum_probs=25.9

Q ss_pred             CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377           18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus        18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      -.++.+++++++|+++++++-..+++.++..+.++++.
T Consensus        94 G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~g  131 (250)
T PLN02591         94 GIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNG  131 (250)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcC
Confidence            35667777777777777777666666666666666653

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=90.50  E-value=2.1  Score=26.49  Aligned_cols=36  Identities=8%  Similarity=0.194  Sum_probs=22.4

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH   54 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~   54 (66)
                      .+..++++.++|+++++++-..+++..+.++.++++
T Consensus        93 ~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~  128 (242)
T cd04724          93 LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEY  128 (242)
T ss_pred             HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHc
Confidence            466666677777766666555556665666655554

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type

Probab=90.45  E-value=1.7  Score=27.62  Aligned_cols=59  Identities=7%  Similarity=-0.065  Sum_probs=37.1

Q ss_pred             cCCCCCcC-CCCHHHHHHHHHhcCCcEEEeeccChh--------------hHHHHHHHHHh-CCC-eEeeeeecCC
Q 035377            8 CHLQDPRI-FHKAPQLIATTVNSGVLHFAVNGVSEE--------------DWNLVKDMSER-HPS-VIPCFGVHPW   66 (66)
Q Consensus         8 ~Hl~~~~~-~~~~~~~~~~~~~~gv~~~~~~~~~~~--------------~~~~~~~l~~~-~~~-i~~~~GiHP~   66 (66)
                      .|+.-... ...+.+.+.++.+.||+.+++++.++.              ....++++.++ ++. .+.+++.+|.
T Consensus        64 ~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe  139 (281)
T TIGR00677        64 MHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPE  139 (281)
T ss_pred             EEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCC
Confidence            46653221 235778888999999999888776651              13334455544 444 6778887873

This protein is an FAD-containing flavoprotein.

>PRK05985 cytosine deaminase; Provisional

Probab=90.35  E-value=1.8  Score=28.16  Aligned_cols=33  Identities=9%  Similarity=0.017  Sum_probs=19.4

Q ss_pred             HHHHHhcCCcEE-----EeeccChhhHHHHHHHHHhCC
Q 035377           23 IATTVNSGVLHF-----AVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus        23 ~~~~~~~gv~~~-----~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      +.++.+.|+..+     +..+..++.++.++++.+.+.
T Consensus       104 ~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~  141 (391)
T PRK05985        104 ARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLR  141 (391)
T ss_pred             HHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhh
Confidence            455667788764     222334556777777766654

>PRK02134 hypothetical protein; Provisional

Probab=90.22  E-value=1.4  Score=27.60  Aligned_cols=52  Identities=19%  Similarity=0.157  Sum_probs=35.7

Q ss_pred             CCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377           11 QDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVH   64 (66)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiH   64 (66)
                      |+--+...+..=+.++.+.|+-.-..+-++...++.+.++++++|.  ..+|+|
T Consensus        10 DDfG~s~~vn~gI~~~~~~G~ltstslM~n~p~~~~a~~l~~~~~~--l~vGlH   61 (249)
T PRK02134         10 DDFGLSKGQNYGIIEAHRNGVVTSTTAMVNMPAIDHAVQLSREYPS--LGVGMH   61 (249)
T ss_pred             CcCCCCHHHHHHHHHHHHCCCeeEEEeecCCchHHHHHHHHHhCCC--CCEEEE
Confidence            3433445567777888888985433333455667789999999987  478888

>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]

Probab=89.96  E-value=1.9  Score=29.13  Aligned_cols=52  Identities=15%  Similarity=0.109  Sum_probs=34.7

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHh
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSER   53 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~   53 (66)
                      .+||.|+|+..+.  .+++++.--+.|..-|+..++.+-      .+++.++..++.+++
T Consensus        54 G~ID~HVH~repg~~~ke~~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~  113 (430)
T COG0044          54 GLVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKG  113 (430)
T ss_pred             CeeEEEEecCCCCcchhhhHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhc
Confidence            3899999998643  345666666777778888766432      245566666666663

>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form

Probab=89.56  E-value=2.8  Score=26.40  Aligned_cols=48  Identities=6%  Similarity=-0.010  Sum_probs=33.2

Q ss_pred             CHHHHHHHHHhcCCcEEEeeccChh------------hHHHHHHHHHh-CCCeEeeeeecC
Q 035377           18 KAPQLIATTVNSGVLHFAVNGVSEE------------DWNLVKDMSER-HPSVIPCFGVHP   65 (66)
Q Consensus        18 ~~~~~~~~~~~~gv~~~~~~~~~~~------------~~~~~~~l~~~-~~~i~~~~GiHP   65 (66)
                      .+...+.++.+.||+.+++++.++.            +...++++.++ ++.++.+++.+|
T Consensus        74 ~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~P  134 (272)
T TIGR00676        74 EIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYP  134 (272)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCC
Confidence            5778888999999999886665543            23345555554 566777777766

This protein is an FAD-containing flavoprotein.

>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM

Probab=89.42  E-value=1.6  Score=28.71  Aligned_cols=34  Identities=12%  Similarity=0.082  Sum_probs=20.2

Q ss_pred             ceEeeccCCCCCcCC----------CCHHHHHHHHHhcCCcEEE
Q 035377            2 KLFDAHCHLQDPRIF----------HKAPQLIATTVNSGVLHFA   35 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~----------~~~~~~~~~~~~~gv~~~~   35 (66)
                      .+||+|+|.....+.          ..+.+-=.++...||..++
T Consensus        49 GlID~H~h~~e~~~~prp~~~~~~~~~~~~~~~~~aa~GiTT~~   92 (376)
T TIGR02318        49 GLIDLHTDNLERHMSPRPGVDWPIDAAIVEHDKQLAAAGITTVF   92 (376)
T ss_pred             cEEEcccCccccCcCCCCCCCcchHHHHHHHHHHHhhCCcceEE
Confidence            389999998652111          1223333466678998654

This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.

>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases

Probab=89.41  E-value=1.2  Score=28.60  Aligned_cols=11  Identities=36%  Similarity=0.697  Sum_probs=9.2

Q ss_pred             ceEeeccCCCC
Q 035377            2 KLFDAHCHLQD   12 (66)
Q Consensus         2 ~~iDsH~Hl~~   12 (66)
                      .+||+|+|++.
T Consensus        50 GlId~H~H~~~   60 (398)
T cd01293          50 AFVDPHIHLDK   60 (398)
T ss_pred             CEeeeeeccCc
Confidence            38999999964

Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.

>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics

Probab=89.36  E-value=1  Score=29.76  Aligned_cols=32  Identities=16%  Similarity=0.325  Sum_probs=21.5

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV   36 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~   36 (66)
                      .+||+|+|++...+.+.   ..+.+...||..++.
T Consensus        54 G~iD~H~H~~~~~~~~~---~~~~a~~~GvTt~~~   85 (415)
T cd01297          54 GFIDVHTHYDGQVFWDP---DLRPSSRQGVTTVVL   85 (415)
T ss_pred             CEeeeeecCCcccccCc---chhhHHhCcEEEEEe
Confidence            38999999976443322   344556778887765

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=89.35  E-value=0.87  Score=28.81  Aligned_cols=37  Identities=11%  Similarity=0.275  Sum_probs=26.4

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      .++.++++.++|+++++++-..+++.+...+.++++.
T Consensus       104 ~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~g  140 (259)
T PF00290_consen  104 IERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHG  140 (259)
T ss_dssp             HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcC
Confidence            5667777777777777777777777777666666653

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins

Probab=88.86  E-value=3.2  Score=24.31  Aligned_cols=41  Identities=20%  Similarity=0.296  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHH-HHHHhCCCeEee
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVK-DMSERHPSVIPC   60 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~-~l~~~~~~i~~~   60 (66)
                      ..++++.+.+.+ .++..+|.+++..+++. .+.++||++..+
T Consensus        35 ~~~ll~~~~~~~-~~v~llG~~~~~~~~~~~~l~~~yp~l~i~   76 (171)
T cd06533          35 MPALLELAAQKG-LRVFLLGAKPEVLEKAAERLRARYPGLKIV   76 (171)
T ss_pred             HHHHHHHHHHcC-CeEEEECCCHHHHHHHHHHHHHHCCCcEEE
Confidence            567888888877 45667899999888866 577789986543

E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.

>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]

Probab=88.77  E-value=2.4  Score=28.36  Aligned_cols=63  Identities=14%  Similarity=0.170  Sum_probs=37.1

Q ss_pred             ceEeeccCCCC-CcCC-----CCHHHHHHHHHhcCCcEEEee--ccChhhHHHHHHHHHhCC--CeEeeeeec
Q 035377            2 KLFDAHCHLQD-PRIF-----HKAPQLIATTVNSGVLHFAVN--GVSEEDWNLVKDMSERHP--SVIPCFGVH   64 (66)
Q Consensus         2 ~~iDsH~Hl~~-~~~~-----~~~~~~~~~~~~~gv~~~~~~--~~~~~~~~~~~~l~~~~~--~i~~~~GiH   64 (66)
                      .|||+|.|=.. -.+.     +.++.+-+...+.|+..++-.  +.+.+...++++-.+++-  ..--.+|+|
T Consensus        53 GfID~hihG~gG~~~~D~~~~~~l~~i~~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiH  125 (380)
T COG1820          53 GFIDLHIHGGGGADFMDAGSVETLETMAEAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQILGIH  125 (380)
T ss_pred             cEEEEeecCcCcccccCccCHHHHHHHHHHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHhccCCceEEEE
Confidence            38999999532 1121     125556666788899877633  345666666665544432  233457887

>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases

Probab=88.45  E-value=1.5  Score=28.19  Aligned_cols=10  Identities=40%  Similarity=0.640  Sum_probs=8.7

Q ss_pred             eEeeccCCCC
Q 035377            3 LFDAHCHLQD   12 (66)
Q Consensus         3 ~iDsH~Hl~~   12 (66)
                      +||+|+|++.
T Consensus        58 lid~H~Hl~~   67 (411)
T cd01298          58 LVNTHTHLAM   67 (411)
T ss_pred             ccccccchhh
Confidence            8999999963

Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.

>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid

Probab=88.29  E-value=4.1  Score=26.39  Aligned_cols=37  Identities=14%  Similarity=0.119  Sum_probs=22.7

Q ss_pred             ceEeeccCCCCC----cC-CCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDP----RI-FHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~----~~-~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+...    .+ ..+.+.-+.++...|+..++..+
T Consensus        55 G~id~H~H~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~d~~   96 (387)
T cd01308          55 GFIDQHVHIIGGGGEGGPSTRTPEVTLSDLTTAGVTTVVGCL   96 (387)
T ss_pred             CeeehhhCcccccCCCcccccCHHHHHHHHHhCCceEEecCc
Confidence            389999998541    11 12333344566778888777544

Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.

>PRK13206 ureC urease subunit alpha; Reviewed

Probab=88.27  E-value=0.35  Score=33.79  Aligned_cols=29  Identities=17%  Similarity=0.426  Sum_probs=21.3

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      .+||+|+|+..+.       ..+.|...||..++..
T Consensus       136 G~ID~HVH~~~Pg-------~~~aALagGVTTvi~~  164 (573)
T PRK13206        136 GAIDCHVHFICPQ-------IVDEALAAGITTLIGG  164 (573)
T ss_pred             CEEeeeeccCCch-------HHHHHHcCCeEEEEcC
Confidence            3899999986432       2377788899988764

>TIGR02967 guan_deamin guanine deaminase

Probab=88.13  E-value=4.9  Score=26.23  Aligned_cols=31  Identities=10%  Similarity=0.083  Sum_probs=18.4

Q ss_pred             HHHHhcCCcEEEeecc-ChhhHHHHHHHHHhC
Q 035377           24 ATTVNSGVLHFAVNGV-SEEDWNLVKDMSERH   54 (66)
Q Consensus        24 ~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~   54 (66)
                      .++...|+..+...+. .+.......+.+++.
T Consensus        97 ~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~  128 (401)
T TIGR02967        97 DELLRNGTTTALVFATVHPESVDALFEAALKR  128 (401)
T ss_pred             HHHHhCCCcEEEeccccCHHHHHHHHHHHHHC
Confidence            4667789988776543 333445555555554

This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.

>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type

Probab=87.68  E-value=3.4  Score=26.86  Aligned_cols=58  Identities=16%  Similarity=0.062  Sum_probs=30.8

Q ss_pred             EeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc------ChhhHH-HHHHHHHhCC---CeEeeeeecC
Q 035377            4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV------SEEDWN-LVKDMSERHP---SVIPCFGVHP   65 (66)
Q Consensus         4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~-~~~~l~~~~~---~i~~~~GiHP   65 (66)
                      -|.||||-.    ++..+..--+-+.||..++....      +.+.++ +..++.++.+   ++.+..|++|
T Consensus         8 ~~~~~~~~~----~~~~~~~~~~~~~~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~~   75 (341)
T TIGR00856         8 DDWHLHLRD----GAMLKAVLPYTSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLYL   75 (341)
T ss_pred             cceeeeccC----chHHHHHHHHHHhhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEEC
Confidence            389999954    22344444445556888776532      222232 2333444554   3445566665

This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.

>TIGR01792 urease_alph urease, alpha subunit

Probab=87.53  E-value=0.6  Score=32.62  Aligned_cols=30  Identities=20%  Similarity=0.468  Sum_probs=19.5

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV   39 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~   39 (66)
                      +||+|+|+..+.       ..+.+...||..++..|+
T Consensus       130 lIDtHvH~~~P~-------~~~aAl~gGVTTmI~~Gt  159 (567)
T TIGR01792       130 GIDTHVHYISPQ-------QVQAALDNGITTLIGGGT  159 (567)
T ss_pred             eEEeecCCCCcc-------HHHHHHhCceEEEecCCC
Confidence            899999985422       245566667776665443

This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=87.53  E-value=4.5  Score=25.39  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=19.1

Q ss_pred             HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377           20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH   54 (66)
Q Consensus        20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~   54 (66)
                      ++.++++.++|+.+++++-...++..+.++.++++
T Consensus       105 e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~  139 (256)
T TIGR00262       105 EEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKH  139 (256)
T ss_pred             HHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHC
Confidence            55556666666666555554445555555555544

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PRK06920 dnaE DNA polymerase III DnaE; Reviewed

Probab=87.30  E-value=4.8  Score=30.46  Aligned_cols=62  Identities=16%  Similarity=0.222  Sum_probs=40.0

Q ss_pred             CceEeeccCCCCCcCC--CCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377            1 MKLFDAHCHLQDPRIF--HKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~--~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      |+++-.|||-...-+.  ..+++++++|++.|...+.++=. +.-..-+..+.+++. +|.|-+|+
T Consensus         1 m~fvhLhvhS~ySlLdg~~~i~~lv~~A~~~g~~alAlTDh~~m~Ga~~F~~~a~~~-gIkPIiG~   65 (1107)
T PRK06920          1 MKFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKH-GIHPIIGL   65 (1107)
T ss_pred             CCceeeecCcccchhccCCCHHHHHHHHHHCCCCEEEEEeCChHhHHHHHHHHHHHc-CCCEeeee
Confidence            6788889997643333  47999999999999987654311 222233344456654 57776664

>PLN02303 urease

Probab=86.99  E-value=0.6  Score=34.02  Aligned_cols=11  Identities=36%  Similarity=0.555  Sum_probs=9.1

Q ss_pred             eEeeccCCCCC
Q 035377            3 LFDAHCHLQDP   13 (66)
Q Consensus         3 ~iDsH~Hl~~~   13 (66)
                      +||+|+|+..+
T Consensus       400 ~ID~HVHf~~P  410 (837)
T PLN02303        400 GIDCHVHFICP  410 (837)
T ss_pred             EEEeecCCCCC
Confidence            79999998643

>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli

Probab=86.91  E-value=4.5  Score=23.71  Aligned_cols=41  Identities=22%  Similarity=0.262  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHH-HHHhCCCeEee
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKD-MSERHPSVIPC   60 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~-l~~~~~~i~~~   60 (66)
                      ..++++.+.+.|. ++..+|.+++..+++.+ |.++||++..+
T Consensus        37 ~~~l~~~~~~~~~-~ifllG~~~~~~~~~~~~l~~~yP~l~iv   78 (172)
T PF03808_consen   37 FPDLLRRAEQRGK-RIFLLGGSEEVLEKAAANLRRRYPGLRIV   78 (172)
T ss_pred             HHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHCCCeEEE
Confidence            5677788888775 56678988888877654 67779986433

Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process

>TIGR03473 HpnK hopanoid biosynthesis associated protein HpnK

Probab=86.23  E-value=2.8  Score=26.62  Aligned_cols=52  Identities=17%  Similarity=0.173  Sum_probs=36.2

Q ss_pred             CCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377           11 QDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVH   64 (66)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiH   64 (66)
                      |+--+.+.+..=+-++.++|+-.-..+-++-..++.+.++++++|.  ..+|+|
T Consensus         9 DDfG~s~~vn~gI~~~~~~G~v~sts~M~n~p~~~~a~~~~~~~~~--~~vGlH   60 (283)
T TIGR03473         9 DDFGLSLEVNEAVEKAHRDGILTAASLMVGAPAAEDAVERARRLPG--LGVGLH   60 (283)
T ss_pred             ccCCCCHHHHHHHHHHHHcCceeeeeeccCChhHHHHHHHHHhCCC--CCEEEE
Confidence            4433445566777788888985443333466778889999999876  578888

The sequences represented by this model are members of the pfam04794 "YdjC-like" family of uncharacterized proteins. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0976) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnK) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a ph

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=86.05  E-value=2.9  Score=26.69  Aligned_cols=39  Identities=15%  Similarity=0.217  Sum_probs=29.7

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      .-.++.++++++.||++++++=.-+++.....+.++++.
T Consensus       109 ~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~g  147 (265)
T COG0159         109 YGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHG  147 (265)
T ss_pred             hhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcC
Confidence            346777888888888888887777777777777777764

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=86.02  E-value=3.8  Score=25.04  Aligned_cols=45  Identities=13%  Similarity=0.183  Sum_probs=32.2

Q ss_pred             CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377           18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG   62 (66)
Q Consensus        18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G   62 (66)
                      +..++.+.+.+.|++.+=+.-.++.-.+.+.++.++||++...+|
T Consensus        21 ~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAG   65 (204)
T TIGR01182        21 DALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAG   65 (204)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEE
Confidence            455677788889998665555566666667778888998766665

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=85.79  E-value=3.8  Score=25.84  Aligned_cols=37  Identities=16%  Similarity=0.279  Sum_probs=30.1

Q ss_pred             HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC
Q 035377           20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS   56 (66)
Q Consensus        20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~   56 (66)
                      .+-++++.+.|+.++++=+...++.+.+.+++++|+.
T Consensus        87 ~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~  123 (241)
T COG0106          87 LEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGD  123 (241)
T ss_pred             HHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCC
Confidence            4556777789999987655678899999999999984

>PRK07583 cytosine deaminase-like protein; Validated

Probab=85.39  E-value=3.3  Score=27.55  Aligned_cols=11  Identities=36%  Similarity=0.613  Sum_probs=9.4

Q ss_pred             ceEeeccCCCC
Q 035377            2 KLFDAHCHLQD   12 (66)
Q Consensus         2 ~~iDsH~Hl~~   12 (66)
                      .+||.|+|++.
T Consensus        76 g~id~H~Hld~   86 (438)
T PRK07583         76 CFVDMHTHLDK   86 (438)
T ss_pred             Ccccceecccc
Confidence            38999999975

>PRK09228 guanine deaminase; Provisional

Probab=84.93  E-value=8.3  Score=25.73  Aligned_cols=30  Identities=13%  Similarity=0.170  Sum_probs=16.2

Q ss_pred             HHHhcCCcEEEeecc-ChhhHHHHHHHHHhC
Q 035377           25 TTVNSGVLHFAVNGV-SEEDWNLVKDMSERH   54 (66)
Q Consensus        25 ~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~   54 (66)
                      ++-..|+..+...++ .+...+.+.+.+++.
T Consensus       123 e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~  153 (433)
T PRK09228        123 ELLRNGTTTALVFGTVHPQSVDALFEAAEAR  153 (433)
T ss_pred             HHHhCCceEEEeccccCHHHHHHHHHHHHHc
Confidence            345678777665432 244455555555543

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=84.47  E-value=4.7  Score=24.61  Aligned_cols=45  Identities=11%  Similarity=0.139  Sum_probs=32.7

Q ss_pred             CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377           18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG   62 (66)
Q Consensus        18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G   62 (66)
                      +..++.+.+.+.|++.+=++-+++.-.+.+.++.+++|.+...+|
T Consensus        17 ~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAG   61 (201)
T PRK06015         17 HAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAG   61 (201)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeE
Confidence            455677888889998665555566666667778888998766655

>PRK05451 dihydroorotase; Provisional

Probab=84.23  E-value=1.3  Score=28.71  Aligned_cols=31  Identities=23%  Similarity=0.094  Sum_probs=17.3

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      -||.||||-...   -.+++..-.+ +++..++..
T Consensus        10 ~~d~h~hl~~~~---~~~~~~~~~~-~~~t~~v~m   40 (345)
T PRK05451         10 PDDWHLHLRDGA---MLKAVVPYTA-RQFGRAIVM   40 (345)
T ss_pred             cceEEEecCCch---HHHHHHHHHH-HhcCEEEEC
Confidence            589999997521   1122333333 457766654

>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional

Probab=84.22  E-value=3.9  Score=26.24  Aligned_cols=58  Identities=10%  Similarity=-0.047  Sum_probs=37.1

Q ss_pred             cCCCCCcC-CCCHHHHHHHHHhcCCcEEEeeccChhh-----HH---HHHHHHHhCCCeEeeeeecC
Q 035377            8 CHLQDPRI-FHKAPQLIATTVNSGVLHFAVNGVSEED-----WN---LVKDMSERHPSVIPCFGVHP   65 (66)
Q Consensus         8 ~Hl~~~~~-~~~~~~~~~~~~~~gv~~~~~~~~~~~~-----~~---~~~~l~~~~~~i~~~~GiHP   65 (66)
                      .|+.--.. ...+...+.++.+.||+.+++++.++..     +.   .++++.++.+....+++.||
T Consensus        87 ~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yP  153 (296)
T PRK09432         87 PHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYP  153 (296)
T ss_pred             eecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCC
Confidence            56653222 2256778889999999999988776421     12   45666666555445666666

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=83.84  E-value=4.7  Score=24.90  Aligned_cols=39  Identities=18%  Similarity=0.242  Sum_probs=27.5

Q ss_pred             HHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC-eEee
Q 035377           22 LIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPC   60 (66)
Q Consensus        22 ~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~-i~~~   60 (66)
                      -++++.+.|+.++++-+...++.+.+.+++++||. +..+
T Consensus        90 ~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvs  129 (234)
T PRK13587         90 QIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLS  129 (234)
T ss_pred             HHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEE
Confidence            35566678999986544456777888889999864 5444

>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA

Probab=83.74  E-value=7.9  Score=25.74  Aligned_cols=37  Identities=14%  Similarity=0.110  Sum_probs=24.5

Q ss_pred             ceEeeccCCCCC----cC-CCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDP----RI-FHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~----~~-~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+...    .+ ....+.-+.++.+.|+..++-++
T Consensus        57 GlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~d~~   98 (389)
T TIGR01975        57 GFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVVGLL   98 (389)
T ss_pred             CEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEecCc
Confidence            389999998631    11 12344457788889998887543

The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.

>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]

Probab=83.33  E-value=4.8  Score=26.61  Aligned_cols=42  Identities=19%  Similarity=0.201  Sum_probs=32.7

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeee
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      .+..++..++.|++.++++|-+ .++.-+..|++..+  ++++|+
T Consensus        83 ~~~~~~~l~~~gId~LvvIGGD-gS~~gA~~Lae~~~--i~vVGv  124 (347)
T COG0205          83 RKVAAENLKKLGIDALVVIGGD-GSYTGAALLAEEGG--IPVVGV  124 (347)
T ss_pred             HHHHHHHHHHcCCCEEEEECCC-ChHHHHHHHHHhcC--CcEEec
Confidence            5677888999999999999965 66777777887765  566665

>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]

Probab=83.17  E-value=2.5  Score=29.01  Aligned_cols=46  Identities=22%  Similarity=0.307  Sum_probs=32.3

Q ss_pred             EeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccC-------------hhhHHHHHHHHHhCCC
Q 035377            4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVS-------------EEDWNLVKDMSERHPS   56 (66)
Q Consensus         4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~-------------~~~~~~~~~l~~~~~~   56 (66)
                      ||+|+|+=.       .+.++.|...||..++-=|+.             +-...+.++-++.+|-
T Consensus       132 iDtHiHfI~-------Pqqi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~~p~  190 (568)
T COG0804         132 IDTHIHFIC-------PQQIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAADGLPM  190 (568)
T ss_pred             ccceeEEec-------HHHHHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhhcCce
Confidence            799999743       456788889999888744433             2335577777777874

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=83.02  E-value=5.9  Score=24.10  Aligned_cols=46  Identities=9%  Similarity=0.247  Sum_probs=29.4

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG   62 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G   62 (66)
                      ++..++.+.+.+.|++.+=++-.++.-.+.+.++.+++|++...+|
T Consensus        20 ~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAG   65 (196)
T PF01081_consen   20 EDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAG   65 (196)
T ss_dssp             GGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEE
Confidence            4677888889999998553333344444444458888999776666

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=82.65  E-value=1.8  Score=28.08  Aligned_cols=34  Identities=24%  Similarity=0.212  Sum_probs=23.5

Q ss_pred             ceEeeccCCCCCcCC-------------------------CCHHHHHHHHHhcCCcEEE
Q 035377            2 KLFDAHCHLQDPRIF-------------------------HKAPQLIATTVNSGVLHFA   35 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~-------------------------~~~~~~~~~~~~~gv~~~~   35 (66)
                      .+||.|+|++.....                         ...+..+.++++.||..+.
T Consensus        30 g~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~~~~~~~~~~~a~~~GvT~~~   88 (359)
T cd01309          30 GLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFKRARAGGVTTVQ   88 (359)
T ss_pred             cEEecccccCccccCCCcCcCCccccCCCCCceeEeecccCCCCHhHHHHHhcCceEEE
Confidence            489999999742110                         1245678899999998753

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>PRK09453 phosphodiesterase; Provisional

Probab=82.37  E-value=6.5  Score=22.89  Aligned_cols=55  Identities=16%  Similarity=0.107  Sum_probs=33.5

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChh------------hHHHHHHHHHhCC-CeEeeeeec
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEE------------DWNLVKDMSERHP-SVIPCFGVH   64 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~------------~~~~~~~l~~~~~-~i~~~~GiH   64 (66)
                      +-|+|-.+      ..++++++.+++.+++.++..| |.-            +.++++++.++.. .++...|=|
T Consensus         6 iSD~Hg~~------~~~~~~l~~~~~~~~d~ii~lG-Di~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNh   73 (182)
T PRK09453          6 ASDTHGSL------PATEKALELFAQSGADWLVHLG-DVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNC   73 (182)
T ss_pred             EEeccCCH------HHHHHHHHHHHhcCCCEEEEcc-cccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCC
Confidence            46888321      2357778888788899888877 332            1345566555543 466666654

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=82.31  E-value=7.9  Score=22.91  Aligned_cols=45  Identities=11%  Similarity=0.232  Sum_probs=30.9

Q ss_pred             CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377           18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG   62 (66)
Q Consensus        18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G   62 (66)
                      +..++++.+.+.|++.+-+.-.+....+.+..+.+.+|.+...+|
T Consensus        17 ~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag   61 (190)
T cd00452          17 DALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAG   61 (190)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEE
Confidence            455777888889998765544455555566777788887665554

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PF04794 YdjC: YdjC-like protein; InterPro: IPR006879 This entry contains ChbG (YdjC), which is is an uncharacterised protein encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source [, ]

Probab=82.27  E-value=3.8  Score=25.47  Aligned_cols=46  Identities=13%  Similarity=0.200  Sum_probs=30.8

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVH   64 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiH   64 (66)
                      ..+..=+.++.+.|+-.-..+-++-..++.+.++++++|.  ..+|+|
T Consensus        14 ~~vn~gI~~~~~~G~vtstslM~n~p~~~~a~~~~k~~~~--~~vGlH   59 (261)
T PF04794_consen   14 PGVNRGIIEAFENGIVTSTSLMVNMPAFEEAAALAKNNPG--LDVGLH   59 (261)
T ss_dssp             HHHHHHHHHHHHCCT-SEEEEETTSTTHHHHHHHHHH-TT--TEEEEE
T ss_pred             HHHHHHHHHHHHcCCceEeeeccCChhHHHHHHHHHhCCC--CCEEEE
Confidence            3455667778888885433334466778889999999886  457877

The entry also contains HpnK, which is a protein associated with hopanoid biosynthesis.; PDB: 2E67_C 2I5I_B.

>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length

Probab=82.25  E-value=3.4  Score=22.08  Aligned_cols=38  Identities=11%  Similarity=0.199  Sum_probs=26.5

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      .|+.+++..|-..|+..++++| +.+-.+.+++++++..
T Consensus        48 gdR~di~~~a~~~~i~~iIltg-~~~~~~~v~~la~~~~   85 (105)
T PF07085_consen   48 GDREDIQLAAIEAGIACIILTG-GLEPSEEVLELAKELG   85 (105)
T ss_dssp             TT-HHHHHHHCCTTECEEEEET-T----HHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHhCCCEEEEeC-CCCCCHHHHHHHHHCC
Confidence            5788999999999988888776 5566677788888754

It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.

>PRK07279 dnaE DNA polymerase III DnaE; Reviewed

Probab=82.11  E-value=12  Score=28.26  Aligned_cols=61  Identities=5%  Similarity=0.007  Sum_probs=38.5

Q ss_pred             ceEeeccCCCCCcCC--CCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377            2 KLFDAHCHLQDPRIF--HKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~--~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      +++-.|+|-...-+.  ..+++++++|++.|...+.++=. +.-..-+-.+.++++ +|.|-+|+
T Consensus         1 mfvhLh~hS~YSlldg~~~i~~lv~~A~~~g~~alAlTD~~~m~Ga~~F~~~a~~~-gIkPIiG~   64 (1034)
T PRK07279          1 MFAQLDTKTVYSFMDSLIDLEKYVERAKELGYQTIGIMDKDNLYGAYHFIEGAQKN-GLQPILGL   64 (1034)
T ss_pred             CeeeeecCCCCccccccCCHHHHHHHHHHCCCCEEEEEcCCccccHHHHHHHHHHc-CCcEEEEE
Confidence            367778886543222  47999999999999987754311 223333444556664 57777764

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=81.89  E-value=4.8  Score=22.12  Aligned_cols=36  Identities=11%  Similarity=0.153  Sum_probs=25.7

Q ss_pred             CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377           18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus        18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      ...++++++.+.|++.+++...  +..+++.+++++++
T Consensus        67 ~~~~~v~~~~~~g~~~v~~~~g--~~~~~~~~~a~~~g  102 (116)
T PF13380_consen   67 KVPEIVDEAAALGVKAVWLQPG--AESEELIEAAREAG  102 (116)
T ss_dssp             HHHHHHHHHHHHT-SEEEE-TT--S--HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCEEEEEcc--hHHHHHHHHHHHcC
Confidence            3678899999999998776654  67778888888875

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=81.73  E-value=3.9  Score=24.83  Aligned_cols=48  Identities=10%  Similarity=0.138  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecC
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHP   65 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP   65 (66)
                      .+++.++++..++|...+..---+.++..+.++..++. ++.+++.+.|
T Consensus        67 ~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~-g~k~GialnP  114 (201)
T PF00834_consen   67 ENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEA-GIKAGIALNP  114 (201)
T ss_dssp             SSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHT-TSEEEEEE-T
T ss_pred             ccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHh-CCCEEEEEEC
Confidence            34566777777777775543333334455666666664 5667777766

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PRK05898 dnaE DNA polymerase III DnaE; Validated

Probab=81.60  E-value=13  Score=28.00  Aligned_cols=61  Identities=11%  Similarity=0.148  Sum_probs=38.1

Q ss_pred             ceEeeccCCCCCcCC--CCHHHHHHHHHhcCCcEEEeec-cChhhHHHHHHHHHhCCCeEeeeee
Q 035377            2 KLFDAHCHLQDPRIF--HKAPQLIATTVNSGVLHFAVNG-VSEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~--~~~~~~~~~~~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      +++-.|||-...-+.  ..+++++++|.+.|...+.++= .++--.-+-.+.++++ +|.|-+|+
T Consensus         1 mfvhLh~hS~YSlLdg~~~~~~lv~~A~e~g~~alALTD~~nl~GaveF~~~ak~~-gIkPIiG~   64 (971)
T PRK05898          1 MFINLNTHSHYSLLSSTLSIDDIIKFALDNNQPYVCLTDLNNLYGCIEFYDKAKAH-NLIPIIGL   64 (971)
T ss_pred             CeeeeecCCccccccccCCHHHHHHHHHHCCCCEEEEEeCCccccHHHHHHHHHHc-CCCEEEEE
Confidence            367788886543333  4799999999999998765431 1222233344455654 57777764

>PRK06846 putative deaminase; Validated

Probab=81.51  E-value=5  Score=26.41  Aligned_cols=11  Identities=27%  Similarity=0.507  Sum_probs=9.3

Q ss_pred             ceEeeccCCCC
Q 035377            2 KLFDAHCHLQD   12 (66)
Q Consensus         2 ~~iDsH~Hl~~   12 (66)
                      .+||+|+|++.
T Consensus        68 g~iD~H~H~~~   78 (410)
T PRK06846         68 AFREMHIHLDK   78 (410)
T ss_pred             CEEeeeecccc
Confidence            38999999974

>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea

Probab=81.37  E-value=8.2  Score=24.33  Aligned_cols=45  Identities=16%  Similarity=0.065  Sum_probs=27.6

Q ss_pred             CHHHHHHHHHhcCCcEEEeeccC-------hhhHHHHHHHHHhC-CCeEeeee
Q 035377           18 KAPQLIATTVNSGVLHFAVNGVS-------EEDWNLVKDMSERH-PSVIPCFG   62 (66)
Q Consensus        18 ~~~~~~~~~~~~gv~~~~~~~~~-------~~~~~~~~~l~~~~-~~i~~~~G   62 (66)
                      ...++++...+.||+++++.|++       .++-.++.+.+.+. ..+...+|
T Consensus        21 ~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg   73 (279)
T cd00953          21 KFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVG   73 (279)
T ss_pred             HHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeC
Confidence            35677788888899998887763       34444555543332 23555554

This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PRK07228 N-ethylammeline chlorohydrolase; Provisional

Probab=81.29  E-value=10  Score=25.16  Aligned_cols=10  Identities=40%  Similarity=0.660  Sum_probs=8.9

Q ss_pred             eEeeccCCCC
Q 035377            3 LFDAHCHLQD   12 (66)
Q Consensus         3 ~iDsH~Hl~~   12 (66)
                      +||+|+|+..
T Consensus        58 lId~H~H~~~   67 (445)
T PRK07228         58 LIQGHIHLCQ   67 (445)
T ss_pred             EEecccCCcc
Confidence            8999999974

>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2

Probab=81.28  E-value=2.3  Score=26.84  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=23.1

Q ss_pred             CCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377           30 GVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG   62 (66)
Q Consensus        30 gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G   62 (66)
                      |..++++-+|.+++..++.+....++-+.|.+|
T Consensus       187 g~~GvV~gAT~p~e~~~iR~~~~~~~il~PGig  219 (261)
T TIGR02127       187 SSVGAVVGATSPGDLLRLRIEMPTAPFLVPGFG  219 (261)
T ss_pred             CceEEEECCCCHHHHHHHHHhCCCCeEEeCCcC
Confidence            577888878888888888776644444555554

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.

>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]

Probab=81.08  E-value=11  Score=28.68  Aligned_cols=60  Identities=15%  Similarity=0.274  Sum_probs=38.4

Q ss_pred             CceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeeccChhhHH---HHHHHHHhCCCeEeeeee
Q 035377            1 MKLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNGVSEEDWN---LVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~---~~~~l~~~~~~i~~~~Gi   63 (66)
                      |+++-.|||-+..-+  ...+++++++|++.|...+.+  |+..+.-   +..+.+++. ++.+-+|+
T Consensus         2 ~~fv~Lh~hS~YS~Ldga~~i~~Lv~~A~~~g~~Alai--TD~~nl~Gav~Fy~~ak~~-gikpIiG~   66 (1139)
T COG0587           2 MSFVHLHVHSEYSLLDGASKIEELVKKAKELGMPALAL--TDHNNLYGAVEFYKAAKKA-GIKPIIGC   66 (1139)
T ss_pred             CceeecccccccchhccccCHHHHHHHHHHcCCCeEEE--ecCCcceeHHHHHHHHHHc-CCeEEeee
Confidence            568888999764322  247999999999999987644  2444333   333334443 57776664

>PRK09061 D-glutamate deacylase; Validated

Probab=81.05  E-value=3.6  Score=28.18  Aligned_cols=29  Identities=21%  Similarity=0.102  Sum_probs=18.7

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      .+||+|+|...+.       ..+.+...||..++..
T Consensus        72 G~ID~H~H~~~~~-------~~~~~~~~GvTtvv~~  100 (509)
T PRK09061         72 GFIDLHAHGQSVA-------AYRMQAFDGVTTALEL  100 (509)
T ss_pred             CeEeeeeCCCCCc-------cchhhccCCceeEEee
Confidence            3899999986422       1233345688877665

>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria

Probab=80.97  E-value=4.7  Score=25.57  Aligned_cols=41  Identities=10%  Similarity=0.128  Sum_probs=28.6

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEe
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIP   59 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~   59 (66)
                      .+.++.++++.+.|.+-++..|....  +.+.+++++||++.+
T Consensus        48 ~~~~~~~~~~~~~g~dlIi~~g~~~~--~~~~~vA~~yPd~~F   88 (306)
T PF02608_consen   48 ADYEEAIRQLADQGYDLIIGHGFEYS--DALQEVAKEYPDTKF   88 (306)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEESGGGH--HHHHHHHTC-TTSEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEccHHHH--HHHHHHHHHCCCCEE
Confidence            35677888888889887877665444  457789999998544

All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.

>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=80.80  E-value=1.1  Score=30.02  Aligned_cols=11  Identities=55%  Similarity=0.637  Sum_probs=9.4

Q ss_pred             ceEeeccCCCC
Q 035377            2 KLFDAHCHLQD   12 (66)
Q Consensus         2 ~~iDsH~Hl~~   12 (66)
                      .+||+||||..
T Consensus        65 GLID~HtHl~~   75 (406)
T COG1228          65 GLIDAHTHLGF   75 (406)
T ss_pred             ceeeccccccc
Confidence            38999999975

>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions

Probab=80.25  E-value=7.1  Score=22.61  Aligned_cols=42  Identities=10%  Similarity=0.108  Sum_probs=28.3

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEe
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIP   59 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~   59 (66)
                      ++..+..+++++.||. ++.+|....+.+++..++..-.++|.
T Consensus       120 d~~~~~a~~lr~~gv~-i~~vG~~~~~~~eL~~ias~p~~vf~  161 (165)
T cd01481         120 DDVERPAVALKRAGIV-PFAIGARNADLAELQQIAFDPSFVFQ  161 (165)
T ss_pred             chHHHHHHHHHHCCcE-EEEEeCCcCCHHHHHHHhCCCccEEE
Confidence            3566667788888886 55677765677777777765334553

The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=80.13  E-value=3.1  Score=26.18  Aligned_cols=49  Identities=16%  Similarity=0.254  Sum_probs=32.6

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccC---hhhHHHHHHH---HHhCCCeEeeeeecC
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVS---EEDWNLVKDM---SERHPSVIPCFGVHP   65 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~---~~~~~~~~~l---~~~~~~i~~~~GiHP   65 (66)
                      .|..+-+++.-+.||.+++..|-.   ++....+.+|   ++.-..|.++.|+-|
T Consensus       128 ~d~~~ale~li~~Gv~RILTsGg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~  182 (241)
T COG3142         128 PDPLEALEQLIELGVERILTSGGKASALEGLDLLKRLIEQAKGRIIIMAGAGVRA  182 (241)
T ss_pred             CCHHHHHHHHHHCCCcEEecCCCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCH
Confidence            468888999999999999987753   3333344444   443334777777654

>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=80.07  E-value=6.1  Score=24.77  Aligned_cols=36  Identities=17%  Similarity=0.338  Sum_probs=26.2

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH   54 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~   54 (66)
                      .+..++.++++|..+++++-..+|+.....+-++++
T Consensus       112 ~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~  147 (268)
T KOG4175|consen  112 VENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKH  147 (268)
T ss_pred             HHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhc
Confidence            466777777777777777777777777777766665

>PRK09875 putative hydrolase; Provisional

Probab=80.04  E-value=11  Score=24.28  Aligned_cols=63  Identities=16%  Similarity=0.140  Sum_probs=40.2

Q ss_pred             ceEeeccCCCC--CcCC-------CCHHHHH---HHHHhcCCcEEEeecc--ChhhHHHHHHHHHhCC-CeEeeeeec
Q 035377            2 KLFDAHCHLQD--PRIF-------HKAPQLI---ATTVNSGVLHFAVNGV--SEEDWNLVKDMSERHP-SVIPCFGVH   64 (66)
Q Consensus         2 ~~iDsH~Hl~~--~~~~-------~~~~~~~---~~~~~~gv~~~~~~~~--~~~~~~~~~~l~~~~~-~i~~~~GiH   64 (66)
                      .+..+|=|+..  +.+.       ++.+..+   .+.++.|+..++.++.  --++-+.+.+++++-. +|..+.|++
T Consensus         7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y   84 (292)
T PRK09875          7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYY   84 (292)
T ss_pred             CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCC
Confidence            35677888742  2111       2344444   4567799999887543  1256677778888765 588898976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	66
1zzm_A	259	Putative deoxyribonuclease YJJV; hydrolaze, zinc,	3e-13
2y1h_A	272	Putative deoxyribonuclease tatdn3; hydrolase; 2.50	2e-12
1xwy_A	264	DNAse TATD, deoxyribonuclease TATD; TIM barrael, z	5e-11
3gg7_A	254	Uncharacterized metalloprotein; structural genomic	8e-11
1j6o_A	268	TATD-related deoxyribonuclease; structural genomic	1e-10
2gzx_A	265	Putative TATD related DNAse; deoxyribonuclease, NE	2e-10
3rcm_A	287	TATD family hydrolase; HET: CIT; 2.05A {Pseudomona	3e-10
1yix_A	265	Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW	6e-10
2xio_A	301	Putative deoxyribonuclease tatdn1; hydrolase; 1.19	5e-08
3ipw_A	325	Hydrolase TATD family protein; niaid, ssgcid, seat	1e-06
3e2v_A	401	3'-5'-exonuclease; structural genomics, hydrolase,	3e-06

>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 Length = 259

 Score = 60.6 bits (148), Expect = 3e-13
 Identities = 14/66 (21%), Positives = 24/66 (36%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
           +  D HCH   P         +     +GV    V     E++  V  ++E +  +   
Sbjct: 3  CRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAA 62

Query: 61 FGVHPW 66
           G+HP 
Sbjct: 63 LGLHPG 68

>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} Length = 272

 Score = 58.7 bits (143), Expect = 2e-12
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVI-P 59
          + L D HCHL  P        ++     + V+          ++  +  +SER+   + P
Sbjct: 4  VGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLP 63

Query: 60 CFGVHP 65
          C GVHP
Sbjct: 64 CLGVHP 69

>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 Length = 264

 Score = 54.4 bits (132), Expect = 5e-11
 Identities = 12/65 (18%), Positives = 28/65 (43%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
           ++FD   +L   +       ++A   ++GV    + G +  +    + ++ ++ S    
Sbjct: 3  YRMFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWST 62

Query: 61 FGVHP 65
           GVHP
Sbjct: 63 AGVHP 67

>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} Length = 254

 Score = 53.7 bits (130), Expect = 8e-11
 Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
          M L D H HL      +  P  +A       L       +   W     ++   P V   
Sbjct: 1  MSLIDFHVHLD----LYPDPVAVARACEERQLTVLSVTTTPAAWRGTLALAAGRPHVWTA 56

Query: 61 FGVHP 65
           G HP
Sbjct: 57 LGFHP 61

>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 Length = 268

 Score = 53.7 bits (130), Expect = 1e-10
 Identities = 15/65 (23%), Positives = 26/65 (40%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
            + D H HL   +       +I++   + +      GV+ ED     D+S+    +   
Sbjct: 11 HHMVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFCS 70

Query: 61 FGVHP 65
           GVHP
Sbjct: 71 VGVHP 75

>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Length = 265

 Score = 52.5 bits (127), Expect = 2e-10
 Identities = 14/63 (22%), Positives = 24/63 (38%)

Query: 3  LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62
          L D H HL D +      ++I     +GV    V G ++        + + +  +    G
Sbjct: 2  LIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGIIG 61

Query: 63 VHP 65
           HP
Sbjct: 62 WHP 64

>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} Length = 287

 Score = 52.6 bits (127), Expect = 3e-10
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
          M+L D   +L +     +   ++   + +GV    + G S        ++ ++  +    
Sbjct: 1  MQLIDIGVNLTNSSFHDQQAAIVERALEAGVTQMLLTGTSLAVSEQALELCQQLDASGAH 60

Query: 61 F----GVHP 65
               GVHP
Sbjct: 61 LFATAGVHP 69

>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 Length = 265

 Score = 51.4 bits (124), Expect = 6e-10
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 1  MKLFDAHCHLQDPR---IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSV 57
          M L D+HCHL       +      ++A      V        +   +  ++D+     +V
Sbjct: 1  MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNV 60

Query: 58 IPCFGVHP 65
          +   GVHP
Sbjct: 61 VFSCGVHP 68

>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} Length = 301

 Score = 46.1 bits (110), Expect = 5e-08
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 1  MKLFDAHCHLQDPRIFHKA----------PQLIATTVNSGVLHFAVNGVSEEDWNLVKDM 50
          MK  D   +L DP                  +I   V  GV  F + G + +D      +
Sbjct: 1  MKFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHL 60

Query: 51 SERHPSVIPCFGVHP 65
          ++ +       G HP
Sbjct: 61 AQTNGMFFSTVGCHP 75

>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} Length = 325

 Score = 42.3 bits (100), Expect = 1e-06
 Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 17/81 (20%)

Query: 1   MKLFDAHCHLQDPRIFHKA-----------PQLIATTVNSGVLHFAVNGVSEEDWNLVKD 49
            +  D   +L D   +                ++     +G+ H  +      D+    +
Sbjct: 26  QQFIDIGANLTDDN-YFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIE 84

Query: 50  MSERHPSVIPCF-----GVHP 65
           +  ++ ++         GVHP
Sbjct: 85  IINKYQNLTNIKLVTTIGVHP 105

>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} Length = 401

 Score = 41.2 bits (96), Expect = 3e-06
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 17/81 (20%)

Query: 1  MKLFDAHCHLQDPRIFHKA-----------PQLIATTVNSGVLHFAVNGVSEEDWNLVKD 49
          +K +D   +L DP  FH              +L+       V +  V G S  +     +
Sbjct: 12 LKYYDIGLNLTDPM-FHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIE 70

Query: 50 MSERHPSVIPCF-----GVHP 65
          +      + P       GVHP
Sbjct: 71 LVSSVKDLSPLKLYHTIGVHP 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
3rcm_A	287	TATD family hydrolase; HET: CIT; 2.05A {Pseudomona	99.9
3ipw_A	325	Hydrolase TATD family protein; niaid, ssgcid, seat	99.89
3gg7_A	254	Uncharacterized metalloprotein; structural genomic	99.86
3e2v_A	401	3'-5'-exonuclease; structural genomics, hydrolase,	99.84
2xio_A	301	Putative deoxyribonuclease tatdn1; hydrolase; 1.19	99.84
1zzm_A	259	Putative deoxyribonuclease YJJV; hydrolaze, zinc,	99.83
1xwy_A	264	DNAse TATD, deoxyribonuclease TATD; TIM barrael, z	99.83
2y1h_A	272	Putative deoxyribonuclease tatdn3; hydrolase; 2.50	99.83
1yix_A	265	Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW	99.78
1j6o_A	268	TATD-related deoxyribonuclease; structural genomic	99.76
2gzx_A	265	Putative TATD related DNAse; deoxyribonuclease, NE	99.71
3guw_A	261	Uncharacterized protein AF_1765; alpha-beta protei	99.7
4i6k_A	294	Amidohydrolase family protein; enzyme function ini	99.55
2ob3_A	330	Parathion hydrolase; metalloenzyme, TIM barrel, ne	99.5
3cjp_A	272	Predicted amidohydrolase, dihydroorotase family; s	99.46
2vc7_A	314	Aryldialkylphosphatase; phosphotriesterase, promis	99.43
2f6k_A	307	Metal-dependent hydrolase; metal dependent hydroly	99.42
2ffi_A	288	2-pyrone-4,6-dicarboxylic acid hydrolase, putativ;	99.37
2dvt_A	327	Thermophilic reversible gamma-resorcylate decarbo;	99.33
4do7_A	303	Amidohydrolase 2; enzyme function initiative, EFI,	99.23
3irs_A	291	Uncharacterized protein BB4693; structural genomic	99.12
1bf6_A	291	Phosphotriesterase homology protein; hypothetical	98.95
2hbv_A	334	2-amino-3-carboxymuconate 6-semialdehyde decarbox;	98.77
2wm1_A	336	2-amino-3-carboxymuconate-6-semialdehyde decarboxy	98.6
3gtx_A	339	Organophosphorus hydrolase; mutant, amidohydrolase	98.51
2gwg_A	350	4-oxalomesaconate hydratase; TIM-barrel like prote	98.39
3nqb_A	608	Adenine deaminase 2; PSI-II, structural genomics,	98.16
3hm7_A	448	Allantoinase; metallo-dependent hydrolase, protein	98.08
4d9a_A	303	2-pyrone-4,6-dicarbaxylate hydrolase; structural g	98.03
2z00_A	426	Dihydroorotase; zinc binding protein, hydrolase, m	98.01
2ics_A	379	Adenine deaminase; TIM barrel, binuclear zinc, ade	98.0
3k2g_A	364	Resiniferatoxin-binding, phosphotriesterase- relat	97.89
2yxo_A	267	Histidinol phosphatase; metal-dependent, hydrolase	97.78
2yb1_A	292	Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v	97.75
3ij6_A	312	Uncharacterized metal-dependent hydrolase; structu	97.71
1m65_A	245	Hypothetical protein YCDX; structural genomics, be	97.62
3nur_A	357	Amidohydrolase; TIM barrel; 1.75A {Staphylococcus	97.61
3rhg_A	365	Putative phophotriesterase; hydrolase, amidohydrol	97.27
1xrt_A	467	Dihydroorotase, dhoase; amidohydrolase, metalloenz	97.2
3e38_A	343	Two-domain protein containing predicted PHP-like d	97.14
3mpg_A	428	Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus	97.04
3qy7_A	262	Tyrosine-protein phosphatase YWQE; TIM barrel, pol	96.97
2vm8_A	501	Dihydropyrimidinase-related protein 2; neurogenesi	96.89
2anu_A	255	Hypothetical protein TM0559; predicted metal-depen	96.87
3o0f_A	301	Putative metal-dependent phosphoesterase; structur	96.76
3dcp_A	283	Histidinol-phosphatase; HISK, histidine biosynthes	96.73
3gri_A	424	Dihydroorotase, dhoase; hydrolase, IDP00795, metal	96.68
3b0x_A	575	DNA polymerase beta family (X family); structural	96.66
2wje_A	247	CPS4B, tyrosine-protein phosphatase CPSB; capsule	96.57
1gkr_A	458	Hydantoinase, non-ATP dependent L-selective hydant	96.53
1gkp_A	458	Hydantoinase; hydrolase, dihydropyrimidinase, cycl	96.29
2ftw_A	521	Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba	96.28
4f0r_A	447	5-methylthioadenosine/S-adenosylhomocysteine DEAM;	96.22
2q01_A	497	Uronate isomerase; structural genomics, protein st	96.14
1j5s_A	463	Uronate isomerase; TM0064, structural genomics, JC	96.1
3iac_A	473	Glucuronate isomerase; IDP02065, structural genom	96.1
2w9m_A	578	Polymerase X; SAXS, DNA repair, DNA polymerase, DN	95.89
3iv8_A	381	N-acetylglucosamine-6-phosphate deacetylase; IDP01	95.86
3sfw_A	461	Dihydropyrimidinase; hydrolase, zinc binding; HET:	95.52
3feq_A	423	Putative amidohydrolase; unknown source, sargasso	95.49
2vr2_A	541	Dihydropyrimidinase; hydantoinase, metal-binding,	95.38
2qee_A	437	BH0493 protein; amidohydrolase, structural genomic	95.06
1o12_A	376	N-acetylglucosamine-6-phosphate deacetylase; struc	94.95
2hnh_A	910	DNA polymerase III alpha subunit; DNA replication,	94.85
3f2b_A	1041	DNA-directed DNA polymerase III alpha chain; DNA p	94.64
3e74_A	473	Allantoinase; (beta/alpha)8-barrel domain, small b	94.61
2gwn_A	452	Dihydroorotase; zinc-binding prote structural geno	94.59
2r8c_A	426	Putative amidohydrolase; unknown source, sargasso	94.57
3gnh_A	403	L-lysine, L-arginine carboxypeptidase CC2672; N-me	94.52
4dzh_A	472	Amidohydrolase; adenosine deaminase, nysgrc, struc	94.16
3h4u_A	479	Amidohydrolase; signature of Zn ligands, structura	94.07
1e9y_B	569	Urease subunit beta; hydrolase, dodecamer; HET: KC	93.81
2vhl_A	396	N-acetylglucosamine-6-phosphate deacetylase; N- ac	93.64
1v77_A	212	PH1877P, hypothetical protein PH1877; RNAse P prot	93.61
2hpi_A	1220	DNA polymerase III alpha subunit; POL-beta-like nu	93.59
3dc8_A	490	Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K	93.58
2z26_A	347	Dihydroorotase, dhoase; TIM barrel, hydrolase; HET	93.49
2fty_A	559	Dihydropyrimidinase; alpha/beta barrel, beta-sandw	93.48
2i9u_A	439	Cytosine/guanine deaminase related protein; protei	93.02
2ood_A	475	BLR3880 protein; PSI-II, PSI-2, guanine deaminase,	92.75
3lnp_A	468	Amidohydrolase family protein OLEI01672_1_465; TIM	92.73
4ac7_C	570	Urease subunit alpha; hydrolase, bacillus pasteuri	92.46
4ubp_C	570	Protein (urease (chain C)); bacillus pasteurii, ni	92.46
2qs8_A	418	XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p	92.46
1nfg_A	457	D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2	92.31
3tn4_A	360	Phosphotriesterase; lactonase, hydrolase; HET: KCX	92.13
2paj_A	492	Putative cytosine/guanine deaminase; NYSGXRC, PSI-	92.09
2vun_A	386	Enamidase; nicotinate degradation, binuclear metal	92.02
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	91.76
4inf_A	373	Metal-dependent hydrolase; amidohydrolase, metal b	91.76
3ooq_A	396	Amidohydrolase; structural genomics, protein struc	91.5
1p1m_A	406	Hypothetical protein TM0936; putative metal depend	91.21
3ls9_A	456	Triazine hydrolase; atrazine chlorohydrolase TRZN;	91.18
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	91.12
2p9b_A	458	Possible prolidase; protein structure initiative I	90.58
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	90.4
4dyk_A	451	Amidohydrolase; adenosine deaminase, nysgrc, struc	90.28
2imr_A	420	Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2,	90.14
3be7_A	408	Zn-dependent arginine carboxypeptidase; unknown so	89.78
2q09_A	416	Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio	88.22
4aql_A	476	Guanine deaminase; hydrolase, purine metabolism; H	88.14
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	87.75
3mtw_A	403	L-arginine carboxypeptidase CC2672; hydrolase; HET	87.33
1ra0_A	430	Cytosine deaminase; alpha-beta barrel, hexamer, co	87.32
1yrr_A	382	N-acetylglucosamine-6-phosphate deacetylase; (beta	86.84
1onw_A	390	Isoaspartyl dipeptidase; amidohydrolase, hydrolase	86.68
4gy7_A	840	Urease; JACK bean, hydrolase, ME binding, nickel;	86.4
3mdu_A	453	N-formimino-L-glutamate iminohydrolase; amonohydra	86.24
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	85.31
3pnz_A	330	Phosphotriesterase family protein; amidohydrolase	85.15
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	85.06
3mkv_A	426	Putative amidohydrolase; sargasso SEA, structural	83.42
3pnu_A	359	Dihydroorotase; TIM barrel, zinc binding, hydrolas	83.3
3s99_A	356	Basic membrane lipoprotein; ssgcid, structural gen	83.24
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	82.67
2i5i_A	263	UPF0249 protein EF_3048; putative cellobiose-phosp	82.04
3fst_A	304	5,10-methylenetetrahydrofolate reductase; TIM barr	81.53
4dbe_A	222	Orotidine 5'-phosphate decarboxylase; TIM barrel,	80.62
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	80.59
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	80.27
3v7p_A	427	Amidohydrolase family protein; iron binding site,	80.04

>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}

Probab=99.90  E-value=4e-24  Score=132.89  Aligned_cols=66  Identities=18%  Similarity=0.374  Sum_probs=64.1

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC----eEeeeeecCC
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS----VIPCFGVHPW   66 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~----i~~~~GiHP~   66 (66)
                      |++||+||||+...|.+|+++++++|+++||.+++++|+++++++++++|+++||+    +|+++|+|||
T Consensus         1 M~~iD~H~HL~~~~~~~d~~~vl~~a~~~gV~~~v~~g~~~~~~~~~~~la~~~~~~~~~v~~~~GiHP~   70 (287)
T 3rcm_A            1 MQLIDIGVNLTNSSFHDQQAAIVERALEAGVTQMLLTGTSLAVSEQALELCQQLDASGAHLFATAGVHPH   70 (287)
T ss_dssp             CCEEEEEECTTCGGGTTCHHHHHHHHHHTTEEEEEECCCSHHHHHHHHHHHHHHCTTSSSEEEEECCCGG
T ss_pred             CceEEEeecCCchhcccCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhCCCCCceEEEEEEECcC
Confidence            89999999999999999999999999999999999999999999999999999998    9999999996

>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}

Probab=99.89  E-value=8.5e-24  Score=133.45  Aligned_cols=66  Identities=15%  Similarity=0.305  Sum_probs=63.7

Q ss_pred             CceEeeccCCCCCcC----------CCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC-----CeEeeeeecC
Q 035377            1 MKLFDAHCHLQDPRI----------FHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP-----SVIPCFGVHP   65 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~----------~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~-----~i~~~~GiHP   65 (66)
                      |++||+||||+++.|          .+|+++++++|+++||.+++++|+++++++++++|+++||     ++|+++|+||
T Consensus        26 m~~iDtH~HL~~~~f~g~y~gk~~h~~d~~~vl~rA~~aGV~~ii~~g~~~~~~~~~~~La~~~~~~~~~~v~~~~GiHP  105 (325)
T 3ipw_A           26 QQFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIEIINKYQNLTNIKLVTTIGVHP  105 (325)
T ss_dssp             CCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCSHHHHHHHHHHHHHHGGGCSSEEEEEECCCG
T ss_pred             CCeEEEEECCCchHhccccccccccccCHHHHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHHCCCcccceEEEEEEECc
Confidence            689999999999999          8899999999999999999999999999999999999999     8999999999


Q ss_pred             C
Q 035377           66 W   66 (66)
Q Consensus        66 ~   66 (66)
                      |
T Consensus       106 ~  106 (325)
T 3ipw_A          106 T  106 (325)
T ss_dssp             G
T ss_pred             c
Confidence            7

>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0

Probab=99.86  E-value=1.1e-22  Score=124.77  Aligned_cols=62  Identities=19%  Similarity=0.343  Sum_probs=56.7

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      |++|||||||+.   .+|+++++++|+++||..++ +|+++++++++++|+++||++|+++|+|||
T Consensus         1 m~liDtH~HL~~---~~d~~~vl~~a~~~gV~~i~-v~~~~~~~~~~~~la~~~~~v~~~~GiHP~   62 (254)
T 3gg7_A            1 MSLIDFHVHLDL---YPDPVAVARACEERQLTVLS-VTTTPAAWRGTLALAAGRPHVWTALGFHPE   62 (254)
T ss_dssp             -CCEEEEECGGG---SSSHHHHHHHHHHTTCEEEE-CCSSGGGHHHHHGGGTTCTTEEECBCCCGG
T ss_pred             CceEEEeeCCCC---CCCHHHHHHHHHHCCCcEEE-ecCCHHHHHHHHHHHHhCCCeEEEEeeCcc
Confidence            889999999985   45899999999999999765 699999999999999999999999999997

>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.7e-21  Score=125.69  Aligned_cols=66  Identities=21%  Similarity=0.314  Sum_probs=62.1

Q ss_pred             CceEeeccCCCCCcCC----------CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC-----eEeeeeecC
Q 035377            1 MKLFDAHCHLQDPRIF----------HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-----VIPCFGVHP   65 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~----------~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~-----i~~~~GiHP   65 (66)
                      |++||+||||+++.|.          .|++++++||+++||.+++++|+++++++++++|+++||+     +|+++|+||
T Consensus        12 ~~~iDih~nL~d~~f~g~y~~~~~h~~D~~~vl~rA~~~GV~~ii~~g~~l~~s~~~~~La~~~~~~~~~~l~~tvGvHP   91 (401)
T 3e2v_A           12 LKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIELVSSVKDLSPLKLYHTIGVHP   91 (401)
T ss_dssp             CCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCSHHHHHHHHHHHHHHTTTCSSEEEEEECCCG
T ss_pred             CCeEEEEeCcCcHHHhhhccccccCccCHHHHHHHHHHCCCCEEEEecCCHHHHHHHHHHHHHCCCccccceEEEEEECc
Confidence            5799999999988875          7999999999999999999999999999999999999998     599999999


Q ss_pred             C
Q 035377           66 W   66 (66)
Q Consensus        66 ~   66 (66)
                      +
T Consensus        92 ~   92 (401)
T 3e2v_A           92 C   92 (401)
T ss_dssp             G
T ss_pred             C
Confidence            6

>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}

Probab=99.84  E-value=3.1e-21  Score=119.59  Aligned_cols=66  Identities=24%  Similarity=0.378  Sum_probs=62.6

Q ss_pred             CceEeeccCCCCCcCC----------CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            1 MKLFDAHCHLQDPRIF----------HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~----------~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      |++||+||||+.+.+.          .+.++++++++++||.+++++|++++++++++++++++|++++++|+|||
T Consensus         1 ~~~iD~H~Hl~~~~~~~~~~~~~~h~~d~~~vl~~~~~~GV~~~v~~~~~~~~~~~~~~la~~~~~v~~~~GiHP~   76 (301)
T 2xio_A            1 MKFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQTNGMFFSTVGCHPT   76 (301)
T ss_dssp             CCEEEEEECTTCGGGGTEETTEECSCCCHHHHHHHHHHHTEEEEEECCCSHHHHHHHHHHHTTCTTEEEEECCCGG
T ss_pred             CeEEEEcCCCCChHhcccccccccCccCHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHHCCCEEEEEEECcC
Confidence            7899999999988776          68999999999999999999999999999999999999999999999996

>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12

Probab=99.83  E-value=1.2e-20  Score=113.96  Aligned_cols=66  Identities=21%  Similarity=0.422  Sum_probs=62.6

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      |++||+|||++...+..+.++++++++++||..++++|+++++++++.++++++|++++++|+|||
T Consensus         3 m~~iD~H~Hl~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~G~hP~   68 (259)
T 1zzm_A            3 CRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPG   68 (259)
T ss_dssp             CCEEESCBCTTSTTTTTCHHHHHHHHHHTTEEEEEEECCSGGGHHHHHHHHHHCTTEEEEECCCGG
T ss_pred             ceEEEeeecCCchhhccCHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence            679999999998888889999999999999999999999999999999999999999999999996

>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12

Probab=99.83  E-value=1.2e-20  Score=114.19  Aligned_cols=66  Identities=18%  Similarity=0.370  Sum_probs=61.0

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      |++||+|||++...+..+.++++++++++||.+++++|++++++++++++++++|++++++|+|||
T Consensus         3 m~~iD~H~Hl~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~G~hP~   68 (264)
T 1xwy_A            3 YRMFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPH   68 (264)
T ss_dssp             --CEEEEECTTSGGGTTTHHHHHHHHHHTTCCEEEECCCSHHHHHHHHHHHHHSTTEEEEECCCGG
T ss_pred             CcEEEEeeCCCChhhccCHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEEEECCc
Confidence            568999999998777789999999999999999999999999999999999999999999999996

>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}

Probab=99.83  E-value=1.9e-20  Score=113.91  Aligned_cols=66  Identities=27%  Similarity=0.585  Sum_probs=62.2

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC-eEeeeeecCC
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCFGVHPW   66 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~-i~~~~GiHP~   66 (66)
                      |++||+|||++...+..+.++++++++++||.+++++|++++++++++++++++|. +++++|+|||
T Consensus         4 m~~iD~H~Hl~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~~i~~~~GihP~   70 (272)
T 2y1h_A            4 VGLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCLGVHPV   70 (272)
T ss_dssp             CCEEEEEECTTSGGGTTTHHHHHHHHHHTTEEEEEECCSSGGGHHHHHHHHHHTTTTEEEEECCCSB
T ss_pred             CcEEEEeeCCCchhhhcCHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEEECCC
Confidence            67999999999888888999999999999999999999999999999999999995 9999999996

>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12

Probab=99.78  E-value=2.5e-19  Score=108.07  Aligned_cols=66  Identities=23%  Similarity=0.387  Sum_probs=61.7

Q ss_pred             CceEeeccCCCCCcC---CCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            1 MKLFDAHCHLQDPRI---FHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~---~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      |++||+|||++...+   ..+.++++++++++||.+++++++++++++.+.++++++|++++++|+||+
T Consensus         1 m~~iD~H~Hl~~~~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~~~~~~~~~~~~~~~p~~~~~~g~hP~   69 (265)
T 1yix_A            1 MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVVFSCGVHPL   69 (265)
T ss_dssp             CCEEEEEECGGGSCTTTTCSSHHHHHHHHHHTTEEEEEECCSSHHHHHHHHHHHCSCTTEEEEECCCTT
T ss_pred             CcEEEEeeCCCchhhcccccCHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence            789999999987666   678999999999999999999999999999999999999999999999996

>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12

Probab=99.76  E-value=5.3e-19  Score=107.86  Aligned_cols=64  Identities=23%  Similarity=0.326  Sum_probs=61.6

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      ++|+||||+.+.+..+.++++++++++||.+++++++++++++++.++++++|++++++|+|||
T Consensus        13 ~~~~~~hl~~~~~~~~~~~~l~~~~~~GV~~~v~~~~~~~~~~~~~~l~~~~p~i~~~~G~hP~   76 (268)
T 1j6o_A           13 MVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFCSVGVHPH   76 (268)
T ss_dssp             EEEEEECTTSGGGTTTHHHHHHTTTTTTEEEEEEECSSHHHHHHHHHHHTTCTTEEEEECCCGG
T ss_pred             ccccccCCCChhhccCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCEEEEEeeccc
Confidence            7999999999999999999999999999999999999999999999999999999999999996

>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=99.71  E-value=2.8e-17  Score=98.99  Aligned_cols=65  Identities=22%  Similarity=0.308  Sum_probs=60.4

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      ++||+|||++...+..+.++++++++++||.+++++++++++++.+.++++++|++++++|+||+
T Consensus         1 m~iD~H~Hl~~~~~~~~~~~~l~~~~~~Gv~~~v~~~~~~~~~~~~~~~~~~~p~~~~~~g~~P~   65 (265)
T 2gzx_A            1 MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGIIGWHPV   65 (265)
T ss_dssp             -CEEEEECTTSGGGTTTHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHHHHHCTTEEEEECCCGG
T ss_pred             CeEEEeeCCCCcccccCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEEEeccC
Confidence            38999999998777778999999999999999999999999999999999999999999999996

>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304}

Probab=99.70  E-value=2.9e-18  Score=105.39  Aligned_cols=60  Identities=17%  Similarity=0.307  Sum_probs=49.4

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccCh----------hhHHHHHH----HHHhCC-CeEeeeeecCC
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSE----------EDWNLVKD----MSERHP-SVIPCFGVHPW   66 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~----------~~~~~~~~----l~~~~~-~i~~~~GiHP~   66 (66)
                      |+|||||||+...+     +.+++|+++||.+++++|+++          ++|+++++    +++++| ++|+++|+|||
T Consensus         1 m~iDtH~Hld~~~~-----~~l~~a~~~GV~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~v~~~~GiHP~   75 (261)
T 3guw_A            1 MYFDSHLHSEGLGF-----SELVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFEPLRCEAAGVKMHPAVGIHPR   75 (261)
T ss_dssp             -CCBCCCCGGGCCH-----HHHHHHHTTSCCEECCBCCCSSCCSSHHHHHHHHHHHHHTHHHHHHTTTCEECCBCCCCGG
T ss_pred             CeEEeccCCCCCCh-----HHHHHHHHCCCcEEEEeccCccccchhhhHHHHHHHHHHHHHHHHHHCCCCEEEEEEECcc
Confidence            38999999986553     358999999999999999886          45777775    477887 69999999996

>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}

Probab=99.55  E-value=1e-14  Score=89.90  Aligned_cols=66  Identities=14%  Similarity=0.061  Sum_probs=56.6

Q ss_pred             CceEeeccCCCCCcC------------CCCHHHHHHHHHhcCCcEEEeeccCh--hhHHHHHHHHHhCCC-eEeeeeecC
Q 035377            1 MKLFDAHCHLQDPRI------------FHKAPQLIATTVNSGVLHFAVNGVSE--EDWNLVKDMSERHPS-VIPCFGVHP   65 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~------------~~~~~~~~~~~~~~gv~~~~~~~~~~--~~~~~~~~l~~~~~~-i~~~~GiHP   65 (66)
                      |++||+|||++.+.|            ..++++++++++++||+++++++.+.  .+++.++++++++|. +++.+|+||
T Consensus        25 ~~~iDtH~Hl~~~~~p~~~~~~~~p~~~~~~e~~l~~~~~~GV~~~V~v~~~~~~~~n~~~~~~~~~~p~r~~g~~~v~P  104 (294)
T 4i6k_A           25 MNCIDTHAHVFSTQDHSIETARYAPDYEATVQSFISHLDEHNFTHGVLVQPSFLGTNNQAMLNAIQQYPDRLKGIAVVQH  104 (294)
T ss_dssp             CCSEEEEECCBCTTSCCCTTCSCCCCSCBCHHHHHHHHHHTTCCEEEEECCGGGTTCCHHHHHHHHHSTTTEEEEECCCT
T ss_pred             CCceEeeeEeecCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEecCcccccchHHHHHHHHHCCCeEEEEEEeCC
Confidence            568999999988766            46899999999999999999988765  456778999999985 888899999


Q ss_pred             C
Q 035377           66 W   66 (66)
Q Consensus        66 ~   66 (66)
                      .
T Consensus       105 ~  105 (294)
T 4i6k_A          105 T  105 (294)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...

Probab=99.50  E-value=5.3e-15  Score=92.83  Aligned_cols=65  Identities=12%  Similarity=0.125  Sum_probs=53.1

Q ss_pred             CceEeeccCCCC--CcC-----C-----CCHHH-H---HHHHHhcCCcEEEeeccC--hhhHHHHHHHHHhCC-CeEeee
Q 035377            1 MKLFDAHCHLQD--PRI-----F-----HKAPQ-L---IATTVNSGVLHFAVNGVS--EEDWNLVKDMSERHP-SVIPCF   61 (66)
Q Consensus         1 m~~iDsH~Hl~~--~~~-----~-----~~~~~-~---~~~~~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~-~i~~~~   61 (66)
                      |.+||+||||+.  ..+     .     .+.+. +   +++++++||..++.+|++  .++++.+.+++++++ ++|+++
T Consensus        15 lGliD~H~HL~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~aGV~~iv~~~~~~~~~~~~~~~~la~~~~~~i~~~~   94 (330)
T 2ob3_A           15 AGFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAAT   94 (330)
T ss_dssp             HCSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEEECEE
T ss_pred             CCCceeeeCeecCCchhccCCCchhhhccCHHHHHHHHHHHHHHcCCCEEEeCCCCCcCCCHHHHHHHHHHhCCcEEEEe
Confidence            458999999975  443     2     34444 4   899999999999999986  478999999999998 799999


Q ss_pred             eecC
Q 035377           62 GVHP   65 (66)
Q Consensus        62 GiHP   65 (66)
                      |+||
T Consensus        95 G~hp   98 (330)
T 2ob3_A           95 GLWF   98 (330)
T ss_dssp             ECCS
T ss_pred             cCCc
Confidence            9994

>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824}

Probab=99.46  E-value=1.2e-13  Score=83.78  Aligned_cols=60  Identities=20%  Similarity=0.192  Sum_probs=52.2

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChh----------------------------------hHHHH
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEE----------------------------------DWNLV   47 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~----------------------------------~~~~~   47 (66)
                      ++||+|||++.     +.++++++++++||.+.+++++.+.                                  +++.+
T Consensus         3 m~iD~H~Hl~~-----~~~~~l~~m~~~Gv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~n~~~   77 (272)
T 3cjp_A            3 LIIDGHTHVIL-----PVEKHIKIMDEAGVDKTILFSTSIHPETAVNLRDVKKEMKKLNDVVNGKTNSMIDVRRNSIKEL   77 (272)
T ss_dssp             CCEEEEEECCS-----SHHHHHHHHHHHTCCEEEEECCSCCGGGCCSHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHH
T ss_pred             eEEEehhhcCC-----CHHHHHHHHHHcCCCEEEEeCCCCCccccchhhhhhhhhhcccccccCCchhhHHHHHhhHHHH
Confidence            48999999975     3589999999999999888887554                                  68889


Q ss_pred             HHHHHhCCCeEeeeeecCC
Q 035377           48 KDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus        48 ~~l~~~~~~i~~~~GiHP~   66 (66)
                      .++++++|+.+.++|+||+
T Consensus        78 ~~~~~~~p~~~~~~g~~p~   96 (272)
T 3cjp_A           78 TNVIQAYPSRYVGFGNVPV   96 (272)
T ss_dssp             HHHHHHSTTTEEEEECCCT
T ss_pred             HHHHHhCCCeEEEEEEeCC
Confidence            9999999999999999995

>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A*

Probab=99.43  E-value=5.7e-14  Score=86.48  Aligned_cols=66  Identities=12%  Similarity=0.176  Sum_probs=52.1

Q ss_pred             CceEeeccCCCC--CcC-----C-----CCHHHH---HHHHHhcCCcEEEeeccC--hhhHHHHHHHHHhCC-CeEeeee
Q 035377            1 MKLFDAHCHLQD--PRI-----F-----HKAPQL---IATTVNSGVLHFAVNGVS--EEDWNLVKDMSERHP-SVIPCFG   62 (66)
Q Consensus         1 m~~iDsH~Hl~~--~~~-----~-----~~~~~~---~~~~~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~-~i~~~~G   62 (66)
                      |.+||+|||++.  ..+     .     .+.+.+   +++++++||..++.++++  ..+++.+.+++++++ ++++++|
T Consensus        16 ~G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G   95 (314)
T 2vc7_A           16 IGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTG   95 (314)
T ss_dssp             CCSEESSCBSCBCCHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECEE
T ss_pred             cCCcccccccccCcchhcccCcchhhhcccHHHHHHHHHHHHHcCCCEEEecCCCCCCcCHHHHHHHHHHcCCeEEEEee
Confidence            468999999974  333     1     233444   488999999999998876  466888999999988 6999999


Q ss_pred             ecCC
Q 035377           63 VHPW   66 (66)
Q Consensus        63 iHP~   66 (66)
                      +||+
T Consensus        96 ~hp~   99 (314)
T 2vc7_A           96 IYIY   99 (314)
T ss_dssp             BCCS
T ss_pred             cCCC
Confidence            9995

>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15

Probab=99.42  E-value=2.2e-13  Score=83.30  Aligned_cols=65  Identities=14%  Similarity=0.125  Sum_probs=53.8

Q ss_pred             CceEeeccCCCCCcCC------------------CCHHHHHHHHHhcCCcEEEeeccC---------------hhhHHHH
Q 035377            1 MKLFDAHCHLQDPRIF------------------HKAPQLIATTVNSGVLHFAVNGVS---------------EEDWNLV   47 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~------------------~~~~~~~~~~~~~gv~~~~~~~~~---------------~~~~~~~   47 (66)
                      |++||+|||+..+.+.                  .+.+++++++++.||++.+++++.               ...++.+
T Consensus         1 m~~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~~~~~~~~~~~~~~~~~~~~n~~~   80 (307)
T 2f6k_A            1 MSKIDFHTHYLPTSYVEALKRHVPGDPDGWPTPEWTPQLTLNFMRDNDISYSILSLSSPHVNFGDKAETIRLVEAANDDG   80 (307)
T ss_dssp             -CEEEEEEECCCHHHHHHHHHHCCSSGGGSCCCCCCHHHHHHHHHHTTEEEEEEECCSSCSCSSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCcCCHHHHHHHHHhccCCcccCcCCCCCHHHHHHHHHHcCCCEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence            7899999999875432                  578999999999999998777652               2567788


Q ss_pred             HHHHHhCCCeEeeeeecC
Q 035377           48 KDMSERHPSVIPCFGVHP   65 (66)
Q Consensus        48 ~~l~~~~~~i~~~~GiHP   65 (66)
                      .++++++|+.+.++|+||
T Consensus        81 ~~~~~~~p~r~~~~~~~p   98 (307)
T 2f6k_A           81 KSLAQQYPDQLGYLASLP   98 (307)
T ss_dssp             HHHHHHCTTTEEEEECCC
T ss_pred             HHHHHhCccceeEEEeCC
Confidence            999999999999999998

>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15

Probab=99.37  E-value=3e-13  Score=82.33  Aligned_cols=66  Identities=11%  Similarity=0.050  Sum_probs=55.3

Q ss_pred             CceEeeccCCCCCcC------------CCCHHHHHHHHHhcCCcEEEeecc--ChhhHHHHHHHHHhCCC-eEeeeeecC
Q 035377            1 MKLFDAHCHLQDPRI------------FHKAPQLIATTVNSGVLHFAVNGV--SEEDWNLVKDMSERHPS-VIPCFGVHP   65 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~------------~~~~~~~~~~~~~~gv~~~~~~~~--~~~~~~~~~~l~~~~~~-i~~~~GiHP   65 (66)
                      |++||+|||+....+            ..+.+++++++++.||.+.++++.  ...+++.++++++++|+ +++++|+||
T Consensus        12 ~~iID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~~~~~~~n~~~~~~~~~~p~r~~~~~~v~p   91 (288)
T 2ffi_A           12 LTAIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLSALQTVPGQLRGVVMLER   91 (288)
T ss_dssp             CCCEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBCCGGGTTCCHHHHHHHHHSTTTBCCBBCCCS
T ss_pred             CCceeecccccCCCCCCCCcccCCCCCCCCHHHHHHHHHHhCCCeEEEECCccccccHHHHHHHHHHCCCCEEEEEEeCC
Confidence            568999999986543            357899999999999999888775  35678889999999996 889999999


Q ss_pred             C
Q 035377           66 W   66 (66)
Q Consensus        66 ~   66 (66)
                      .
T Consensus        92 ~   92 (288)
T 2ffi_A           92 D   92 (288)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A*

Probab=99.33  E-value=7e-13  Score=81.66  Aligned_cols=65  Identities=6%  Similarity=0.083  Sum_probs=52.7

Q ss_pred             ceEeeccCCCCCcCCC-------------------CH-HHHHHHHHhcCCcEEEeeccCh----------------hhHH
Q 035377            2 KLFDAHCHLQDPRIFH-------------------KA-PQLIATTVNSGVLHFAVNGVSE----------------EDWN   45 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~-------------------~~-~~~~~~~~~~gv~~~~~~~~~~----------------~~~~   45 (66)
                      ++||+|||+..+.+..                   ++ +++++++++.||.+.+++++.+                ..++
T Consensus         3 ~~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~~p~~~~~~d~~~~~~~~~~~n~   82 (327)
T 2dvt_A            3 GKVALEEHFAIPETLQDSAGFVPGDYWKELQHRLLDIQDTRLKLMDAHGIETMILSLNAPAVQAIPDRRKAIEIARRAND   82 (327)
T ss_dssp             SEEEEEEEECCHHHHGGGTTTSCSSHHHHHHHHHHCSSSHHHHHHHHTTEEEEEEEECSSGGGGCCCHHHHHHHHHHHHH
T ss_pred             CeEEEecccCCHHHHHHHhccCCcccccccchhcCChhHHHHHHhhhcCCcEEEEeCCCCcccccCChHHHHHHHHHHHH
Confidence            4899999998655422                   55 8899999999999988877554                5677


Q ss_pred             HHHHHHHhCCC-eEeeeeecCC
Q 035377           46 LVKDMSERHPS-VIPCFGVHPW   66 (66)
Q Consensus        46 ~~~~l~~~~~~-i~~~~GiHP~   66 (66)
                      .+.++++++|+ +++.+|+||+
T Consensus        83 ~~~~~~~~~p~r~~~~~~v~p~  104 (327)
T 2dvt_A           83 VLAEECAKRPDRFLAFAALPLQ  104 (327)
T ss_dssp             HHHHHHHHCTTTEEEEECCCTT
T ss_pred             HHHHHHhhCCCceEEEeecCcC
Confidence            89999999997 6688999985

>4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A

Probab=99.23  E-value=4.3e-11  Score=73.93  Aligned_cols=65  Identities=11%  Similarity=0.048  Sum_probs=53.1

Q ss_pred             CceEeeccCCCCCc------C---------CCCHHHHHHHHHhcCCcEEEeeccC--hhhHHHHHHHHHhCCCeEeeeee
Q 035377            1 MKLFDAHCHLQDPR------I---------FHKAPQLIATTVNSGVLHFAVNGVS--EEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         1 m~~iDsH~Hl~~~~------~---------~~~~~~~~~~~~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      |++||+|+|+....      .         ...++++++++++.||+++++++++  ..+++.++++++++|++++++|+
T Consensus         3 ~m~iD~H~H~~~~~~~~~pw~~~~~~~~~~~~~~~~ll~~~~~~GV~~~V~v~~~~~~~~n~~l~~la~~~p~~~g~vg~   82 (303)
T 4do7_A            3 ALRIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQARAGRDETAFLLELACDEARIAAVVGW   82 (303)
T ss_dssp             CCCEEEEECCBCCCGGGCTTCCTTCGGGSSCBCHHHHHHHHHHTTCCEEEEECCSSSHHHHHHHHHHHTTCTTEEEEEEC
T ss_pred             CcEEeCCEecccCCCCCCCCCCCccccccCCCCHHHHHHHHHhcCCcEEEEEccCCcHHHHHHHHHHHHhCCCeEEEEEE
Confidence            45799999996431      1         1368999999999999999998875  46789999999999999999995


Q ss_pred             cC
Q 035377           64 HP   65 (66)
Q Consensus        64 HP   65 (66)
                      +|
T Consensus        83 v~   84 (303)
T 4do7_A           83 ED   84 (303)
T ss_dssp             CC
T ss_pred             eC
Confidence            43

>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A

Probab=99.12  E-value=2.2e-10  Score=70.57  Aligned_cols=66  Identities=11%  Similarity=0.104  Sum_probs=55.4

Q ss_pred             CceEeeccCCCCCcCC----------------------------CCHHHHHHHHHhcCCcEEEeeccCh-----hhHHHH
Q 035377            1 MKLFDAHCHLQDPRIF----------------------------HKAPQLIATTVNSGVLHFAVNGVSE-----EDWNLV   47 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~----------------------------~~~~~~~~~~~~~gv~~~~~~~~~~-----~~~~~~   47 (66)
                      |++||+|+|....++.                            .+.++++++++++||++.++++++.     .+++.+
T Consensus         3 ~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~md~~GV~~~V~~~~~~~~~~~~~N~~~   82 (291)
T 3irs_A            3 LKIIDFRLRPPAMGFLNARIYTRPDIRNRFTRQLGFEPAPSAEEKSLELMFEEMAAAGIEQGVCVGRNSSVLGSVSNADV   82 (291)
T ss_dssp             CCCEESSBCCSSGGGGGSHHHHCHHHHHHHHHHHTCCCCHHHHHTCHHHHHHHHHHTTCCEEEEECCEETTTEECCHHHH
T ss_pred             cceEEEecCCCchHhhccccccccccccchhhccCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEcCCCccccccccHHHH
Confidence            7899999997542221                            3788999999999999998888764     678999


Q ss_pred             HHHHHhCCC-eEeeeeecCC
Q 035377           48 KDMSERHPS-VIPCFGVHPW   66 (66)
Q Consensus        48 ~~l~~~~~~-i~~~~GiHP~   66 (66)
                      .++++++|+ +++++|+||+
T Consensus        83 ~~~~~~~p~r~~~~~~v~p~  102 (291)
T 3irs_A           83 AAVAKAYPDKFHPVGSIEAA  102 (291)
T ss_dssp             HHHHHHSTTTEEEEEECCCS
T ss_pred             HHHHHHCCCcEEEEEecCcc
Confidence            999999996 9999999995

>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3

Probab=98.95  E-value=3.1e-10  Score=68.77  Aligned_cols=65  Identities=18%  Similarity=0.160  Sum_probs=49.4

Q ss_pred             ceEeeccCCCCCc--C-------CC---CHHHHHHHHHhcCCcEEEeeccC-h-hhHHHHHHHHHhCC-CeEeeeee---
Q 035377            2 KLFDAHCHLQDPR--I-------FH---KAPQLIATTVNSGVLHFAVNGVS-E-EDWNLVKDMSERHP-SVIPCFGV---   63 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~-------~~---~~~~~~~~~~~~gv~~~~~~~~~-~-~~~~~~~~l~~~~~-~i~~~~Gi---   63 (66)
                      .+||+|+|+....  +       ..   ...+.++++.+.||..++.++++ . .+++.+.+++++++ ++++++|+   
T Consensus         6 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~~~~   85 (291)
T 1bf6_A            6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD   85 (291)
T ss_dssp             SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCG
T ss_pred             ceeeeccCeecCCcccccCCCcccCCHHHHHHHHHHHHHcCCCEEEecCCCcCCCCHHHHHHHHHhcCCeEEEeeccccC
Confidence            4799999996311  1       01   23456778889999999988875 4 36888999999886 69999999   


Q ss_pred             --cCC
Q 035377           64 --HPW   66 (66)
Q Consensus        64 --HP~   66 (66)
                        ||+
T Consensus        86 ~~hP~   90 (291)
T 1bf6_A           86 AFFPE   90 (291)
T ss_dssp             GGCCT
T ss_pred             ccCcH
Confidence              995

>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A

Probab=98.77  E-value=2.2e-08  Score=62.18  Aligned_cols=48  Identities=10%  Similarity=-0.003  Sum_probs=37.5

Q ss_pred             HHHHHHHHHhcCCcEEEeecc--------Ch--------hhHHHHHHHHHhCCC-eEeeeeecCC
Q 035377           19 APQLIATTVNSGVLHFAVNGV--------SE--------EDWNLVKDMSERHPS-VIPCFGVHPW   66 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~--------~~--------~~~~~~~~l~~~~~~-i~~~~GiHP~   66 (66)
                      .+++++++++.||.+.+++++        ++        ..++.+.++++++|+ +.+.+++||+
T Consensus        60 ~~~~l~~m~~~GV~~~V~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~p~r~~~~~~l~~~  124 (334)
T 2hbv_A           60 PAFRIEEMDAQGVDVQVTCATPVMFGYTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPLQ  124 (334)
T ss_dssp             HHHHHHHHHHHTCSEEEEEECGGGCCTTSCHHHHHHHHHHHHHHHHHHHTTCTTTEEECBCCCTT
T ss_pred             HHHHHHHHHHCCCCEEEECCCchhccCCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEecCcc
Confidence            689999999999999777754        22        455778899999997 5556778874

>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}

Probab=98.60  E-value=1.9e-07  Score=57.90  Aligned_cols=48  Identities=15%  Similarity=-0.065  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhcCCcEEEeeccC--------h--------hhHHHHHHHHHhCCC-eEeeeeecCC
Q 035377           19 APQLIATTVNSGVLHFAVNGVS--------E--------EDWNLVKDMSERHPS-VIPCFGVHPW   66 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~--------~--------~~~~~~~~l~~~~~~-i~~~~GiHP~   66 (66)
                      .+++++++++.||.+.+++++.        +        ..++.+.++++++|+ +.+.+++||+
T Consensus        56 ~~~~l~~m~~~GV~~~v~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~p~r~~~~~~l~~~  120 (336)
T 2wm1_A           56 PEVRIREMDQKGVTVQALSTVPVMFSYWAKPEDTLNLCQLLNNDLASTVVSYPRRFVGLGTLPMQ  120 (336)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCGGGGCTTSCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEECCCTT
T ss_pred             HHHHHHHHHHCCCCEEEECCCchhhcccCCHHHHHHHHHHHHHHHHHHHHhccCceeEEEeCCCc
Confidence            6899999999999998777542        2        346778899999998 5555578874

>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*

Probab=98.51  E-value=6e-08  Score=61.34  Aligned_cols=46  Identities=9%  Similarity=0.085  Sum_probs=40.2

Q ss_pred             HHHHHHHhcCCcEEEeeccC--hhhHHHHHHHHHhCC-CeEeeeeecCC
Q 035377           21 QLIATTVNSGVLHFAVNGVS--EEDWNLVKDMSERHP-SVIPCFGVHPW   66 (66)
Q Consensus        21 ~~~~~~~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~-~i~~~~GiHP~   66 (66)
                      +-+++++++||..++.++++  .++++.+.+++++++ +++.++|+||+
T Consensus        67 ~el~~a~~aGv~tiV~~~~~~~~r~~~~l~~la~~~g~~i~~~tG~hp~  115 (339)
T 3gtx_A           67 ETARALLARGIQTVVDATPNGCGRNPAFLREVSEATGLQILCATGFYYE  115 (339)
T ss_dssp             HHHHHHHHTTEEEEEECCCTTTTCCHHHHHHHHHHHCCEEECEECCCCT
T ss_pred             HHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHcCCcEEEEcCCCcc
Confidence            45678899999999998864  589999999999987 79999999993

>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural genomics, PSI, protein S initiative; 1.80A {Rhodopseudomonas palustris} SCOP: c.1.9.15

Probab=98.39  E-value=3.1e-07  Score=57.40  Aligned_cols=45  Identities=11%  Similarity=0.006  Sum_probs=37.7

Q ss_pred             HHHHHHHhcCCcEEEeeccCh-----------------hhHHHHHHHHHhCCCeEeeeeecC
Q 035377           21 QLIATTVNSGVLHFAVNGVSE-----------------EDWNLVKDMSERHPSVIPCFGVHP   65 (66)
Q Consensus        21 ~~~~~~~~~gv~~~~~~~~~~-----------------~~~~~~~~l~~~~~~i~~~~GiHP   65 (66)
                      ++++.+++.||++.+++++..                 ..++.+.++++++|+.|.++|.+|
T Consensus        53 ~~l~~md~~GV~~~vl~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~p~rf~~~~~~p  114 (350)
T 2gwg_A           53 NQLKKMQERGSDLTVFSPRASFMAHHIGDFNVSSTWAAICNELCYRVSQLFPDNFIGAAMLP  114 (350)
T ss_dssp             THHHHHHHHTCCEEEEECCC-------CCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECC
T ss_pred             HHHHHHHHcCCeEEEEcCCchhhccccCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            668899999999988887654                 567788899999999888899988

>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A

Probab=98.16  E-value=3e-06  Score=56.87  Aligned_cols=63  Identities=21%  Similarity=0.208  Sum_probs=48.9

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe------eccChhhHHHHHHHHHhCC-CeEeee-eecCC
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV------NGVSEEDWNLVKDMSERHP-SVIPCF-GVHPW   66 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~------~~~~~~~~~~~~~l~~~~~-~i~~~~-GiHP~   66 (66)
                      .+||+|||+....  .+.++..+++...|+..++.      ...+.+.++..++.+++.| +++.+. |+||.
T Consensus        90 G~ID~H~Hl~~~~--~~~~~~~~~al~~GvTtvv~~p~~~~~v~g~~~~~~~l~~a~~~~~~v~~~~p~~~P~  160 (608)
T 3nqb_A           90 GLIDTHMHIESSM--ITPAAYAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAILLAPSCVPS  160 (608)
T ss_dssp             CEEEEEECGGGGT--SCHHHHHHHHHTTTEEEEEECCHHHHHHHTHHHHHHHHHHHTTCSSEEEEEECCCSSS
T ss_pred             CeEecccCccccc--CCHHHHHHHHHhCCeEEEEcCCccccccCCHHHHHHHHHHhhhcCcEEEEeccccCCC
Confidence            3899999997533  36788899999999998875      2345778888888888877 477777 88873

>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans}

Probab=98.08  E-value=9e-06  Score=51.89  Aligned_cols=64  Identities=14%  Similarity=0.194  Sum_probs=47.6

Q ss_pred             ceEeeccCCCCCcCC--CCHHHHHHHHHhcCCcEEEeec-------cChhhHHHHHHHHHh--CCCeEeeeeecC
Q 035377            2 KLFDAHCHLQDPRIF--HKAPQLIATTVNSGVLHFAVNG-------VSEEDWNLVKDMSER--HPSVIPCFGVHP   65 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~--~~~~~~~~~~~~~gv~~~~~~~-------~~~~~~~~~~~l~~~--~~~i~~~~GiHP   65 (66)
                      .+||+|||+....+.  +++....+.+...|+..++..+       .+.+.+....+.++.  +.++.+..|++|
T Consensus        60 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~~Gvtt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (448)
T 3hm7_A           60 GMVDVHVHFNEPGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVP  134 (448)
T ss_dssp             CEEEEEECCCTTTSGGGCCSHHHHHHHHTTTEEEEEECSSSSSSCSCSHHHHHHHHTHHHHHCSSEEEEEEECCT
T ss_pred             CEEEeeeccCCCCCCcHhHHHHHHHHHHhCCEEEEEeCCCCCCCCCChHHHHHHHHHHhccCCeeEEEEEEEecc
Confidence            389999999865443  5778899999999999988876       346667776666655  335667777776

>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus}

Probab=98.01  E-value=1.1e-05  Score=50.62  Aligned_cols=63  Identities=16%  Similarity=0.201  Sum_probs=45.7

Q ss_pred             eEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeecc-C-----hhhHHHHHHHHHhCC--CeEeeeeecC
Q 035377            3 LFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNGV-S-----EEDWNLVKDMSERHP--SVIPCFGVHP   65 (66)
Q Consensus         3 ~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~~-~-----~~~~~~~~~l~~~~~--~i~~~~GiHP   65 (66)
                      +||+|+|+....+  .++.....+.+...||..++..+. .     .+.++...+.+++.+  ++++..++||
T Consensus        51 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (426)
T 2z00_A           51 FLDLHAHLREPGEEVKEDLFSGLLAAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARLHPAAALTE  123 (426)
T ss_dssp             EEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHTSSEECCEECSBG
T ss_pred             EEEeccccCCCCCCchHHHHHHHHHHHhCCccEEEecCCCCCCcChHHHHHHHHHHhcccCcccEEEEEEeec
Confidence            8999999976332  457888889999999998887664 2     245666777777654  5766666765

>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14

Probab=98.00  E-value=3.9e-06  Score=51.97  Aligned_cols=61  Identities=18%  Similarity=0.261  Sum_probs=41.8

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeeccC-hhhHHHHHHHHHhCC-CeEe-----eeeecC
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGVS-EEDWNLVKDMSERHP-SVIP-----CFGVHP   65 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~~-~~~~~~~~~l~~~~~-~i~~-----~~GiHP   65 (66)
                      .+||+|||+....  +.+   ...+++...||..++.+++. +++++.+.++.++++ +++.     ..|.||
T Consensus        55 G~ID~H~H~~~~~~~~~~---~~~~~~~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~  124 (379)
T 2ics_A           55 GWIDDHVHCFEKMALYYD---YPDEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVA  124 (379)
T ss_dssp             CEEEEEECCCTTSSSSCC---CHHHHTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSSEEEEEEESSTTTTSS
T ss_pred             CEEEeccccCccCccccC---chhhhHhhCceeEEEcCCCCCccCHHHHHHHHHhhcccEEEEccccccCCCC
Confidence            3899999997532  222   23456788999998877643 677888888888776 3542     336676

>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}

Probab=97.89  E-value=9.4e-06  Score=51.75  Aligned_cols=46  Identities=13%  Similarity=-0.007  Sum_probs=40.4

Q ss_pred             HHHHHHHHHhcCCcEEEeeccC--hhhHHHHHHHHHhCC-CeEeeeeec
Q 035377           19 APQLIATTVNSGVLHFAVNGVS--EEDWNLVKDMSERHP-SVIPCFGVH   64 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~-~i~~~~GiH   64 (66)
                      .-+.+++++++||..++.++++  .+++..+.+++++++ +++++.|+|
T Consensus        88 ~~~~l~~~~~aGv~tiV~~t~~g~gr~~~~l~~la~~~gv~i~~~tG~y  136 (364)
T 3k2g_A           88 AIAEVKQFAAVGGRSIVDPTCRGIGRDPVKLRRISAETGVQVVMGAGYY  136 (364)
T ss_dssp             HHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECCSBC
T ss_pred             HHHHHHHHHhcCCCeEEEeCCCcccCCHHHHHHHHHHhCCcEEEEeCcc
Confidence            3367788999999999998865  579999999999999 799999999

>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A

Probab=97.78  E-value=0.00011  Score=44.03  Aligned_cols=35  Identities=11%  Similarity=0.132  Sum_probs=27.9

Q ss_pred             eEeeccCCCCC-cCCCCHHHHHHHHHhcCCcEEEee
Q 035377            3 LFDAHCHLQDP-RIFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         3 ~iDsH~Hl~~~-~~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      ++|.|||.... .-...+++++++|.+.|++.+.++
T Consensus         1 ~~DlH~Ht~~S~DG~~~~ee~v~~A~~~Gl~~iaiT   36 (267)
T 2yxo_A            1 MVDSHVHTPLCGHAEGHPEAYLEEARAKGLKGVVFT   36 (267)
T ss_dssp             CEEEEECCGGGSSCCSCHHHHHHHHHHTTCSEEEEE
T ss_pred             CCccCcCcCCCCCCCCCHHHHHHHHHHcCCCEEEEc
Confidence            48999998643 334579999999999999987653

>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A

Probab=97.75  E-value=0.00019  Score=44.29  Aligned_cols=54  Identities=13%  Similarity=0.102  Sum_probs=37.7

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhC
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERH   54 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~   54 (66)
                      |+++|.|||.....-...+++++++|.+.|++.+.++=- +...+.+..+.+++.
T Consensus         1 M~~~DLH~Ht~~SDg~~~~~elv~~A~~~Gl~~iaiTDH~~~~g~~~~~~~~~~~   55 (292)
T 2yb1_A            1 MANIDLHFHSRTSDGALTPTEVIDRAAARAPALLALTDHDCTGGLAEAAAAAARR   55 (292)
T ss_dssp             -CCEECCBCCTTTTCSSCHHHHHHHHHTTCCSEEEECCBTCCTTHHHHHHHHHHT
T ss_pred             CCccccccCCCccCCCCCHHHHHHHHHHCCCCEEEEecCCccccHHHHHHHHHHc
Confidence            789999999875544457999999999999997654311 233455556666664

>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}

Probab=97.71  E-value=2.2e-05  Score=48.79  Aligned_cols=65  Identities=11%  Similarity=0.214  Sum_probs=44.0

Q ss_pred             CceEeeccCCCCCcCC----------------------CCHHHHHHHHHhcCCcEEEeecc-Ch--------------hh
Q 035377            1 MKLFDAHCHLQDPRIF----------------------HKAPQLIATTVNSGVLHFAVNGV-SE--------------ED   43 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~----------------------~~~~~~~~~~~~~gv~~~~~~~~-~~--------------~~   43 (66)
                      |+.||+|+|+..+.+.                      .|+++.++.+.+.||..++.... ..              ..
T Consensus         3 ~~~ID~H~H~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~~rl~~Md~~Gv~~vl~~~~~~~~~~~d~~~~~~~~r~~   82 (312)
T 3ij6_A            3 LTKIDAYAHILPAKYYQKMLSVEPNIPNMFPFIKIKTLMDLDERLTKWPDQNTKQVISLANISPEDFTDSKTSAELCQSA   82 (312)
T ss_dssp             CCEEEEEEEECCHHHHHHHHHHCTTHHHHCGGGGCHHHHCHHHHHHTCSCTTEEEEEEECSCCGGGTSCHHHHHHHHHHH
T ss_pred             ceeEEeecccCChHHHHHHHHhCCCCCCCCCCCCCcccCCHHHHHHHHHHcCCeEEEECCCCcccccCCHHHHHHHHHHH
Confidence            6789999998643210                      26778888899999976654322 11              24


Q ss_pred             HHHHHHHHHhCCCeEe-eeeecC
Q 035377           44 WNLVKDMSERHPSVIP-CFGVHP   65 (66)
Q Consensus        44 ~~~~~~l~~~~~~i~~-~~GiHP   65 (66)
                      ++.+.++++++|+.+. .+|+=|
T Consensus        83 N~~l~~~~~~~p~rf~g~~a~vp  105 (312)
T 3ij6_A           83 NEELSNLVDQHPGKFAGAVAILP  105 (312)
T ss_dssp             HHHHHHHHHHCTTTEEEEEEECC
T ss_pred             HHHHHHHHHhCCCceeeeEEecC
Confidence            6677888999998653 566544

>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A

Probab=97.62  E-value=8.9e-05  Score=43.97  Aligned_cols=37  Identities=24%  Similarity=0.369  Sum_probs=28.7

Q ss_pred             CceEeeccCCCCCc-CCCCHHHHHHHHHhcCCcEEEee
Q 035377            1 MKLFDAHCHLQDPR-IFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         1 m~~iDsH~Hl~~~~-~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      |+++|.|||..... -...+++++++|.+.|++.+.++
T Consensus         1 m~~~DlH~Ht~~Sd~g~~~~~e~v~~A~~~Gl~~iaiT   38 (245)
T 1m65_A            1 MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAIT   38 (245)
T ss_dssp             -CCEECCBCCTTSTTCCCCHHHHHHHHHHHTCCEEEEE
T ss_pred             CCceEeCcCCCCCCCCCCcHHHHHHHHHHCCCCEEEEC
Confidence            77899999986532 22378999999999999987653

>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}

Probab=97.61  E-value=0.00013  Score=46.28  Aligned_cols=48  Identities=8%  Similarity=-0.019  Sum_probs=32.9

Q ss_pred             CHHHHHHHHHhcCCcEEEeeccCh---------------hhHHHHHHHHHhCCC-eEeeeeecC
Q 035377           18 KAPQLIATTVNSGVLHFAVNGVSE---------------EDWNLVKDMSERHPS-VIPCFGVHP   65 (66)
Q Consensus        18 ~~~~~~~~~~~~gv~~~~~~~~~~---------------~~~~~~~~l~~~~~~-i~~~~GiHP   65 (66)
                      +.++.++.+.+.||++.+++...+               ..++.+.++++++|+ +.+.+.+.|
T Consensus        74 ~~~~rl~~MD~~GI~~~Vls~~~~~~~~~~~~~a~~~~r~~Nd~l~~~~~~~P~Rf~g~a~v~~  137 (357)
T 3nur_A           74 HHDERIQFMNNQDVQIQVLSYGNGSPSNLVGQKAIELCQKANDQLANYIAQYPNRFVGFATLPI  137 (357)
T ss_dssp             CHHHHHHHHHHTTEEEEEEEECTTCGGGSCHHHHHHHHHHHHHHHHHHHHHSTTTEEECBCCCT
T ss_pred             CHHHHHHHHHHCCCcEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEeCCC
Confidence            457789999999998755432221               346678889999997 455555544

>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}

Probab=97.27  E-value=0.00017  Score=45.96  Aligned_cols=43  Identities=16%  Similarity=0.111  Sum_probs=36.7

Q ss_pred             HHHHHHhcCCcEEEeec-cC--hhhHHHHHHHHHhCC-CeEeeeeec
Q 035377           22 LIATTVNSGVLHFAVNG-VS--EEDWNLVKDMSERHP-SVIPCFGVH   64 (66)
Q Consensus        22 ~~~~~~~~gv~~~~~~~-~~--~~~~~~~~~l~~~~~-~i~~~~GiH   64 (66)
                      -+++++++||..++.++ ++  -++++.+.+++++++ +++.+.|+|
T Consensus        80 el~~~~~aGv~tiV~~~g~~g~~r~~~~l~~la~~~gi~i~~~tG~y  126 (365)
T 3rhg_A           80 ELNNFKELGGKTIVDATGSSSIGRDIRKLKQVAELTGINVVASSGLY  126 (365)
T ss_dssp             HHHHHHHTTEEEEEECCCSGGGTCCHHHHHHHHHHHCCEEECEECCC
T ss_pred             HHHHHHhcCCCeEEEcCCCCCCCCCHHHHHHHHHHHCCcEEEEeCcc
Confidence            44788899999998887 42  369999999999998 799999999

>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A*

Probab=97.20  E-value=0.00066  Score=43.54  Aligned_cols=63  Identities=19%  Similarity=0.191  Sum_probs=42.6

Q ss_pred             eEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeeccC------hhhHHHHHHHHHhC--CCeEeeeeecC
Q 035377            3 LFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGVS------EEDWNLVKDMSERH--PSVIPCFGVHP   65 (66)
Q Consensus         3 ~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~~------~~~~~~~~~l~~~~--~~i~~~~GiHP   65 (66)
                      +||+|+|+....  ..+++....+.+...||..++..+..      .+.++...+.+++.  ++++++.+++|
T Consensus       102 lID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~  174 (467)
T 1xrt_A          102 FIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITK  174 (467)
T ss_dssp             EEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBG
T ss_pred             EEEEeecccCCCCCchhhHHHHHHHHHhCCeEEEEecCCCCCCCChHHHHHHHHHHhcccCcceEEEEeeecC
Confidence            899999997532  24577888888999999988876542      24556666666654  35655555543

>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}

Probab=97.14  E-value=0.0012  Score=41.86  Aligned_cols=54  Identities=11%  Similarity=0.114  Sum_probs=37.8

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc-------------ChhhHHHHHHHHHhC
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV-------------SEEDWNLVKDMSERH   54 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~-------------~~~~~~~~~~l~~~~   54 (66)
                      |+.+|.|||-....-...+++++++|++.|++.+.+.--             ....+.++.+.+++.
T Consensus        18 ~~~~DlH~Ht~~SDg~~~~~elv~~A~~~Gl~~iaiTDH~~~~~~~~~~~~d~~~g~~~~~~~a~~~   84 (343)
T 3e38_A           18 TLKCDFHMHSVFSDGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKL   84 (343)
T ss_dssp             EEEEECCBCCTTTTCSBCHHHHHHHHHHTTCSEECCEEESSCCTTTTTBCCCTTHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHcCCCEEEECCCCcccccccccchhHHHHHHHHHHHHHhC
Confidence            457999999865544557999999999999997654322             124455666666654

>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}

Probab=97.04  E-value=0.0021  Score=40.68  Aligned_cols=54  Identities=15%  Similarity=0.193  Sum_probs=38.5

Q ss_pred             ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHhCC
Q 035377            2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSERHP   55 (66)
Q Consensus         2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~~~   55 (66)
                      .+||+|+|+...  ...+++....+.+...|+..++...      ...+.++...+.+++.+
T Consensus        54 G~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (428)
T 3mpg_A           54 GLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKA  115 (428)
T ss_dssp             CEEEEEECCCTTTCTTTCCHHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHC
T ss_pred             CEEEEeeccCCCCCCchhHHHHHHHHHHhCCeEEEEeCCCCCCCCCcHHHHHHHHHHhcccC
Confidence            389999999753  2346788889999999999887643      23455666666666544

>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A

Probab=96.97  E-value=0.0054  Score=37.41  Aligned_cols=34  Identities=18%  Similarity=0.386  Sum_probs=25.6

Q ss_pred             eEeeccCCCC--CcCCCCHHH---HHHHHHhcCCcEEEe
Q 035377            3 LFDAHCHLQD--PRIFHKAPQ---LIATTVNSGVLHFAV   36 (66)
Q Consensus         3 ~iDsH~Hl~~--~~~~~~~~~---~~~~~~~~gv~~~~~   36 (66)
                      +||.|||+..  +.-..+.++   ++++|.+.|++.+++
T Consensus         1 m~D~H~H~~~~~ddG~~~~~~sl~~~~~a~~~G~~~i~~   39 (262)
T 3qy7_A            1 MIDIHCHILPAMDDGAGDSADSIEMARAAVRQGIRTIIA   39 (262)
T ss_dssp             CEESSBCCSTTSSSSCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CEEEeecCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            5899999964  222335664   999999999998865

>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A

Probab=96.89  E-value=0.002  Score=41.56  Aligned_cols=36  Identities=17%  Similarity=0.064  Sum_probs=28.0

Q ss_pred             eEeeccCCCCCcC----CCCHHHHHHHHHhcCCcEEEeec
Q 035377            3 LFDAHCHLQDPRI----FHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         3 ~iDsH~Hl~~~~~----~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      +||+|+|+....+    .+++....+++...||..++..+
T Consensus        80 lID~H~H~~~~~~~~~~~e~~~~~~~~~l~~GvTtv~d~~  119 (501)
T 2vm8_A           80 GIDVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHV  119 (501)
T ss_dssp             EEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEEeeecccccccCCCcHHHHHHHHHHHHhCCcEEEEeCC
Confidence            8999999975432    35777778889999999877643

>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1

Probab=96.87  E-value=0.0017  Score=38.99  Aligned_cols=35  Identities=17%  Similarity=0.127  Sum_probs=28.6

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      ++|.|||.....-...+++++++|.+.|++.+.+.
T Consensus        21 ~~DlH~Ht~~SDg~~t~ee~v~~A~~~Gl~~i~iT   55 (255)
T 2anu_A           21 LCDFHVHTNMSDGHLPLGEVVDLFGKHGVDVVSIT   55 (255)
T ss_dssp             EEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEEE
T ss_pred             EEEEeecCCCcCCCCCHHHHHHHHHHCCCCEEEEc
Confidence            79999998755445579999999999999987543

>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*

Probab=96.76  E-value=0.0063  Score=38.03  Aligned_cols=53  Identities=19%  Similarity=0.300  Sum_probs=37.6

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeec-cChhhHHHHHHHHHhC
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNG-VSEEDWNLVKDMSERH   54 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~-~~~~~~~~~~~l~~~~   54 (66)
                      +.+|.|||-....-...+++++++|++.|++.+.++- .+...+.++.+.+++.
T Consensus        13 ~~~DLH~Hs~~SDG~~~~~elv~~A~~~Gl~~iaiTDH~~~~g~~~~~~~~~~~   66 (301)
T 3o0f_A           13 QGWDIHCHTVFSDGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEI   66 (301)
T ss_dssp             SSEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHH
T ss_pred             ceEEeeECCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCCccccHHHHHHHHHhc
Confidence            3699999987554445799999999999999765422 1344466666666654

>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}

Probab=96.73  E-value=0.012  Score=36.29  Aligned_cols=34  Identities=9%  Similarity=0.142  Sum_probs=27.1

Q ss_pred             eEeeccCCCCCcC-C-CCHHHHHHHHHhcCCcEEEe
Q 035377            3 LFDAHCHLQDPRI-F-HKAPQLIATTVNSGVLHFAV   36 (66)
Q Consensus         3 ~iDsH~Hl~~~~~-~-~~~~~~~~~~~~~gv~~~~~   36 (66)
                      ++|.|+|.....- . ..+++++++|.+.|++.+.+
T Consensus         2 ~~D~H~Ht~~s~~~~~~~~~e~~~~A~~~G~~~i~~   37 (283)
T 3dcp_A            2 KRDGHTHTEFCPHGTHDDVEEMVLKAIELDFDEYSI   37 (283)
T ss_dssp             CEEEEECCTTCTTSCCCCHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEeeCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Confidence            6899999865432 2 46899999999999997754

>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp}

Probab=96.68  E-value=0.0059  Score=38.79  Aligned_cols=53  Identities=15%  Similarity=0.251  Sum_probs=38.5

Q ss_pred             ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHhC
Q 035377            2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSERH   54 (66)
Q Consensus         2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~~   54 (66)
                      .+||+|+|+...  ...++.....+.+...|+..++..+.      ..+.++...+.+++.
T Consensus        53 G~iD~H~H~~~~g~~~~~~~~~~~~~~~~~G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (424)
T 3gri_A           53 GFVDVHVHLREPGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDN  113 (424)
T ss_dssp             CEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHH
T ss_pred             CeEEeeecCCCCCCCCHHHHHHHHHHHHhCCEEEEeECcCCCCCCChHHHHHHHHHHhccC
Confidence            389999999753  23467888888999999998877653      345666666666654

>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*

Probab=96.66  E-value=0.0076  Score=40.32  Aligned_cols=36  Identities=17%  Similarity=0.015  Sum_probs=29.1

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      +++|.|||.....-..++++++++|.+.|++.+.+.
T Consensus       337 ~~~DlH~HT~~SDG~~t~ee~v~~A~~~G~~~iaiT  372 (575)
T 3b0x_A          337 VKGDLQVHSTYSDGQNTLEELWEAAKTMGYRYLAVT  372 (575)
T ss_dssp             CCEEEEECCTTTTCSCCHHHHHHHHHHTTCSEEEEE
T ss_pred             cCeeEeecCCccCCCCCHHHHHHHHHHCCCCEEEEc
Confidence            369999998755434589999999999999987653

>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A

Probab=96.57  E-value=0.0028  Score=37.92  Aligned_cols=35  Identities=20%  Similarity=0.223  Sum_probs=25.5

Q ss_pred             ceEeeccCCCCC--cCCCCHH---HHHHHHHhcCCcEEEe
Q 035377            2 KLFDAHCHLQDP--RIFHKAP---QLIATTVNSGVLHFAV   36 (66)
Q Consensus         2 ~~iDsH~Hl~~~--~~~~~~~---~~~~~~~~~gv~~~~~   36 (66)
                      .++|.|||....  .-..+.+   +++++|.+.|++.+.+
T Consensus         4 ~m~D~H~Ht~~~~ddg~~~~e~~~e~i~~A~~~Gi~~i~~   43 (247)
T 2wje_A            4 GMIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVS   43 (247)
T ss_dssp             CEEECCBCCSTTSSSSCSSHHHHHHHHHHHHHTTEEEEEC
T ss_pred             CCEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            479999998432  2233444   7999999999988754

>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6

Probab=96.53  E-value=0.0067  Score=38.30  Aligned_cols=52  Identities=13%  Similarity=0.142  Sum_probs=34.8

Q ss_pred             eEeeccCCCCCc-C--CCCHHHHHHHHHhcCCcEEEeec-c-C-----hhhHHHHHHHHHhC
Q 035377            3 LFDAHCHLQDPR-I--FHKAPQLIATTVNSGVLHFAVNG-V-S-----EEDWNLVKDMSERH   54 (66)
Q Consensus         3 ~iDsH~Hl~~~~-~--~~~~~~~~~~~~~~gv~~~~~~~-~-~-----~~~~~~~~~l~~~~   54 (66)
                      +||+|+|+.... +  .+++....+.+...||..++..+ . .     .+.++..++.+++.
T Consensus        56 lID~H~H~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (458)
T 1gkr_A           56 VVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRL  117 (458)
T ss_dssp             EEEEEEECCCGGGTTTSCCHHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHC
T ss_pred             EEEeeecccCCCCCCchhHHHHHHHHHHcCCEEEEEeCCCCCCCCCCcHHHHHHHHHHhhhC
Confidence            899999997533 2  34677777888889999888765 1 2     33444555555543

>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A*

Probab=96.29  E-value=0.0075  Score=38.14  Aligned_cols=37  Identities=14%  Similarity=0.132  Sum_probs=27.3

Q ss_pred             eEeeccCCCCC----cCCCCHHHHHHHHHhcCCcEEEeecc
Q 035377            3 LFDAHCHLQDP----RIFHKAPQLIATTVNSGVLHFAVNGV   39 (66)
Q Consensus         3 ~iDsH~Hl~~~----~~~~~~~~~~~~~~~~gv~~~~~~~~   39 (66)
                      +||+|+|+...    ...++.....+.+...|+..++..+.
T Consensus        54 lID~H~H~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~   94 (458)
T 1gkp_A           54 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCC   94 (458)
T ss_dssp             EEEEEECSSCEETTEECSCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             EEecccCCCcCCCCCcCHhHHHHHHHHHHhCCccEEEeCCC
Confidence            89999999753    13456766667778899998877653

>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6

Probab=96.28  E-value=0.0066  Score=39.67  Aligned_cols=36  Identities=19%  Similarity=0.080  Sum_probs=27.0

Q ss_pred             eEeeccCCCCCc----CCCCHHHHHHHHHhcCCcEEEeec
Q 035377            3 LFDAHCHLQDPR----IFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         3 ~iDsH~Hl~~~~----~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      +||+|+|+....    ..+++....+.+...|+..++..+
T Consensus        62 lID~H~H~~~~~~~~~~~e~~~~~~~~a~~~G~Ttv~d~~  101 (521)
T 2ftw_A           62 GIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFV  101 (521)
T ss_dssp             EEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEeeecccCcCCCCccCHHHHHHHHHHHHhCCcceecCcC
Confidence            899999997532    135677777888889998887654

>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A*

Probab=96.22  E-value=0.0043  Score=39.21  Aligned_cols=40  Identities=5%  Similarity=-0.036  Sum_probs=21.7

Q ss_pred             HHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC-CeEeeeeec
Q 035377           22 LIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP-SVIPCFGVH   64 (66)
Q Consensus        22 ~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~-~i~~~~GiH   64 (66)
                      .+.++.+.|+..++..+...+.   +.+.+++.+ ..+.+.+++
T Consensus       115 ~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~g~r~~~~~~~~  155 (447)
T 4f0r_A          115 AMGEMIRGGTTTINDMYFYNAA---VARAGLASGMRTFVGCSIL  155 (447)
T ss_dssp             HHHHHHHTTEEEEEECBSCHHH---HHHHHHHHTCEEEEEEEEC
T ss_pred             HHHHHHhCCcEEEEEcccCHHH---HHHHHHHcCCeEEEEchhc
Confidence            4455677899888766554433   333333332 345555554

>2q01_A Uronate isomerase; structural genomics, protein structure initiative NEW YORK SGX research center for structural genomics, nysgx; 2.34A {Caulobacter crescentus}

Probab=96.14  E-value=0.0043  Score=41.30  Aligned_cols=56  Identities=16%  Similarity=0.208  Sum_probs=35.3

Q ss_pred             CceEeeccCCCCCcC-----CCCHHHH--------HHHHHhcCCcE-EEee----cc-ChhhHHHHHHHHHhCCC
Q 035377            1 MKLFDAHCHLQDPRI-----FHKAPQL--------IATTVNSGVLH-FAVN----GV-SEEDWNLVKDMSERHPS   56 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~-----~~~~~~~--------~~~~~~~gv~~-~~~~----~~-~~~~~~~~~~l~~~~~~   56 (66)
                      |++||-||||+..++     ..++.++        .+.++.+||.- .+.+    || +..+.++-..+++..|.
T Consensus        35 ~PIiDyH~Hl~p~~iaen~~f~~i~elwl~gdHYkwr~mRa~Gv~e~~~~i~~~~gtg~~~~~ekf~~~a~~~~~  109 (497)
T 2q01_A           35 LPIISPHGHTDPSWFATNAPFQDATDLLLAPDHYLFRMLYSQGVSLDALKVRSKAGVPDTDPREAWRVFASHFYL  109 (497)
T ss_dssp             SCEEECSCCCCTHHHHHCCCCCCHHHHTTSSCHHHHHHHHTTTCCSTTTTCCBTTBSCSSCHHHHHHHHHHTGGG
T ss_pred             CCeecCccCCCHHHHhhcCCCCCHHHHhccCcHHHHHHHHHcCCChhhhcccccccCCCCCHHHHHHHHHHHhHH
Confidence            689999999986432     2344444        36778899953 3222    12 44566777777776653

>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.85A {Thermotoga maritima} SCOP: c.1.9.8

Probab=96.10  E-value=0.0039  Score=41.14  Aligned_cols=55  Identities=18%  Similarity=0.267  Sum_probs=35.9

Q ss_pred             CceEeeccCCCCCcC-----CCCHHH--------HHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC
Q 035377            1 MKLFDAHCHLQDPRI-----FHKAPQ--------LIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS   56 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~-----~~~~~~--------~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~   56 (66)
                      |++||-|||++..+.     .+++-+        ..+.++.+||..=.+.| +..+.++-..+++.+|.
T Consensus        36 ~PIiD~HcHl~p~~i~~~~~F~ni~e~wl~gDHYkwr~mRa~Gv~e~~itg-~~~~~ekf~~~a~~~~~  103 (463)
T 1j5s_A           36 LPIVDPHNHLDAKDIVENKPWNDIWEVEGATDHYVWELMRRCGVSEEYITG-SRSNKEKWLALAKVFPR  103 (463)
T ss_dssp             SCEEESCCCCCHHHHHHTCCCSCHHHHHTTTCHHHHHHHHHTTCCGGGTTS-SSCHHHHHHHHHHHGGG
T ss_pred             CCeecCccCCCHHHhccccCcccHHHHhccCchHHHHHHhhcCCChhhhcC-CCCHHHHHHHHHhhhHH
Confidence            679999999985331     234443        34677899985433345 55667777777777654

>3iac_A Glucuronate isomerase; IDP02065, structural genom center for structural genomics of infectious diseases, CSGI; 2.22A {Salmonella typhimurium} SCOP: c.1.9.0

Probab=96.10  E-value=0.0043  Score=41.09  Aligned_cols=56  Identities=23%  Similarity=0.412  Sum_probs=38.7

Q ss_pred             CceEeeccCCCCCc-----CCCCHHHHH--------HHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC
Q 035377            1 MKLFDAHCHLQDPR-----IFHKAPQLI--------ATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS   56 (66)
Q Consensus         1 m~~iDsH~Hl~~~~-----~~~~~~~~~--------~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~   56 (66)
                      |+|||-|||++..+     -.+|+.++.        +.++.+||..=.++|.+..+.++-..+++..|.
T Consensus        30 lPIiDyH~Hl~P~~iaen~~F~nit~lwl~gDHYkwR~mrs~Gv~e~~itG~~a~~~ekf~~~A~t~p~   98 (473)
T 3iac_A           30 MPIYDFHCHLSPQEIADDRRFDNLGQIWLEGDHYKWRALRSAGVDESLITGKETSDYEKYMAWANTVPK   98 (473)
T ss_dssp             SCEEECSCCCCHHHHHHTCCCSCHHHHHHSSCSHHHHHHHHTTCCGGGTTCTTSCHHHHHHHHHHHGGG
T ss_pred             CCEECCCCCCCHHHhccCCCCCCHHHHhccCchHHHHHHHHcCCCHHHccCCCCChHHHHHHHHHHHHH
Confidence            68999999998532     234665553        577899997422356566677777888887764

>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}

Probab=95.89  E-value=0.012  Score=39.44  Aligned_cols=34  Identities=12%  Similarity=-0.074  Sum_probs=28.4

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV   36 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~   36 (66)
                      ++|.|||.....-...+++++++|.+.|++.+.+
T Consensus       328 ~~DlH~HT~~SDG~~t~eemv~~A~~~Gl~~Iai  361 (578)
T 2w9m_A          328 RGMIHTHSTWSDGGASIREMAEATLTLGHEFLGT  361 (578)
T ss_dssp             CEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEE
T ss_pred             ceEEEecCCccCCCCCHHHHHHHHHHCCCeEEEE
Confidence            6899999875544568999999999999998764

>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A*

Probab=95.86  E-value=0.0072  Score=38.74  Aligned_cols=49  Identities=12%  Similarity=0.080  Sum_probs=30.2

Q ss_pred             ceEeeccCCCC----C--cCCCCHHHHHHHHHhcCCcEEEee--ccChhhHHHHHHH
Q 035377            2 KLFDAHCHLQD----P--RIFHKAPQLIATTVNSGVLHFAVN--GVSEEDWNLVKDM   50 (66)
Q Consensus         2 ~~iDsH~Hl~~----~--~~~~~~~~~~~~~~~~gv~~~~~~--~~~~~~~~~~~~l   50 (66)
                      .+||+|+|...    .  ...+++....+.+...|+..++..  +...++..++++.
T Consensus        57 GfID~HvHg~~G~~~~d~~~~e~l~~~~~a~~~~GvTt~l~t~~T~~~e~l~~al~~  113 (381)
T 3iv8_A           57 GFIDLQLNGCGGVMFNDEITAETIDTMHKANLKSGCTSFLPTLITSSDENMRQAIAA  113 (381)
T ss_dssp             CEEEEEECEETTEETTTSCSHHHHHHHHHHHHHTTEEEEEEEEESCCHHHHHHHHHH
T ss_pred             CeEeeeecccCCCCCCCCCCHHHHHHHHHHHHhCCccccccccCCCCHHHHHHHHHH
Confidence            38999999531    1  112345566677788999887654  3355666655443

>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A*

Probab=95.52  E-value=0.036  Score=35.51  Aligned_cols=37  Identities=16%  Similarity=0.026  Sum_probs=28.2

Q ss_pred             ceEeeccCCCCC----cCCCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDP----RIFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~----~~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+..+    ...+++....+.+...|+..++..+
T Consensus        53 G~ID~H~H~~~~~~~~~~~e~~~~~~~~~~~~GvTt~~~~~   93 (461)
T 3sfw_A           53 GGIDPHTHLDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFC   93 (461)
T ss_dssp             CEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             eeEEeEeccCcCCCCcccHhHHHHHHHHHHhCCEEEEEccC
Confidence            389999999742    2346777778888899999887654

>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A*

Probab=95.49  E-value=0.018  Score=35.90  Aligned_cols=47  Identities=11%  Similarity=0.181  Sum_probs=30.6

Q ss_pred             eEeeccCCCCCcCC------CC-------HHHHHHHHHhcCCcEEEeeccChhhHHHHHH
Q 035377            3 LFDAHCHLQDPRIF------HK-------APQLIATTVNSGVLHFAVNGVSEEDWNLVKD   49 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~------~~-------~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~   49 (66)
                      +||+|+|+....+.      .+       ....++++...||..+...+.......+.++
T Consensus        61 lID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~l~~~~~  120 (423)
T 3feq_A           61 FIDCHVHVLASNANLGVNATQPNILAAIRSLPILDAMLSRGFTSVRDAGGADWSLMQAVE  120 (423)
T ss_dssp             EEEEEECTTCCSSCHHHHHHSCHHHHHHTHHHHHHHHHHTTEEEEEECSSCCHHHHHHHH
T ss_pred             eeeeEeeecccCCChhhhhcCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCchHHHHHHHH
Confidence            89999999764331      11       1244566678999998888766555544443

>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}

Probab=95.38  E-value=0.026  Score=37.08  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=25.8

Q ss_pred             eEeeccCCCCCc----CCCCHHHHHHHHHhcCCcEEEeec
Q 035377            3 LFDAHCHLQDPR----IFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         3 ~iDsH~Hl~~~~----~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      +||+|+|+....    ..+++....+.+...|+..++..+
T Consensus        85 ~ID~H~Hl~~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~  124 (541)
T 2vr2_A           85 GIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFA  124 (541)
T ss_dssp             EEEEEECTTCBCSSSBCSCCTTHHHHHHHTTTEEEEEEEE
T ss_pred             EEEecccCCCCCCCCcCHHHHHHHHHHHHhCCeeeecccc
Confidence            899999997532    124566667778889998877654

>2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein structure initiative; 1.65A {Bacillus halodurans c-125} PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A* 2q08_A* 2pnk_A*

Probab=95.06  E-value=0.0095  Score=39.14  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=22.7

Q ss_pred             CceEeeccCCCCCcCC----CCHHHH-----HH-H-HHhcCCc
Q 035377            1 MKLFDAHCHLQDPRIF----HKAPQL-----IA-T-TVNSGVL   32 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~----~~~~~~-----~~-~-~~~~gv~   32 (66)
                      |++||-||||+..++.    .++.++     .- | ++.+||.
T Consensus        22 ~PIiDyH~HL~P~~iae~~f~ni~elwgdHYkw~r~mRa~Gv~   64 (437)
T 2qee_A           22 QPVTDMHTHLFSPNFGEILLWDIDELLTYHYLVAEVMRWTDVS   64 (437)
T ss_dssp             SCEEECSCSCCCGGGCTTSBCSHHHHHTSHHHHHHHHTTCCSC
T ss_pred             CCeeccccCCCHHHHHhcccCCHHhccccHHHHHHHHHHcCCC
Confidence            6899999999975544    456666     22 4 7778874

>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10

Probab=94.95  E-value=0.048  Score=34.20  Aligned_cols=36  Identities=17%  Similarity=0.162  Sum_probs=26.9

Q ss_pred             eEeeccCCCCCc-CC-CCHHHHHHHHHhcCCcEEEeec
Q 035377            3 LFDAHCHLQDPR-IF-HKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         3 ~iDsH~Hl~~~~-~~-~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      +||+|+|+.... +. .+++....++...|+..++..+
T Consensus        57 lID~H~H~~~~~~~~~~~l~~~~~~~l~~GvTtv~d~~   94 (376)
T 1o12_A           57 FVDPHIHGVVGADTMNCDFSEMEEFLYSQGVTTFLATT   94 (376)
T ss_dssp             EEEEEECEETTEETTTTCHHHHHHHHHTTTEEEEEEEC
T ss_pred             eEEEeecCCCCCCCChhhHHHHHHHHHhCCcEEEEecc
Confidence            899999985322 21 2477888888999999887765

>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*

Probab=94.85  E-value=0.082  Score=37.48  Aligned_cols=60  Identities=12%  Similarity=0.137  Sum_probs=38.1

Q ss_pred             eEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec-cChhhHHHHHHHHHhCCCeEeeeee
Q 035377            3 LFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG-VSEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         3 ~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      ++|.|||-...  .-...+++++++|++.|+..+.++= .+.....+..+.+++. ++.+-.|+
T Consensus         6 ~vdLH~HT~~S~lDG~~~~~elv~~A~~~Gl~alAITDH~~~~G~~~~~~~~~~~-gIk~I~G~   68 (910)
T 2hnh_A            6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA-GIKPIVGA   68 (910)
T ss_dssp             CCCCCBCCGGGSSSCCSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHH-TCEEEEEE
T ss_pred             eeeecccccCchhcccCCHHHHHHHHHHCCCCEEEEEeCCcchhHHHHHHHHHHC-CCeEEEEE
Confidence            79999997654  2345799999999999998764431 1223334444445543 45555553

>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*

Probab=94.64  E-value=0.1  Score=37.53  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=39.7

Q ss_pred             CceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec-cChhhHHHHHHHHHhCCCeEeeee
Q 035377            1 MKLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG-VSEEDWNLVKDMSERHPSVIPCFG   62 (66)
Q Consensus         1 m~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~G   62 (66)
                      |+++|.|||-...  .-...+++++++|++.|+..+.++= .+...+.+..+.+++. ++.+-.|
T Consensus       114 ~~~vdLH~HT~~S~lDG~~~~~eLv~~A~~~G~~aiAITDH~~~~G~~~~~~~a~~~-gIk~I~G  177 (1041)
T 3f2b_A          114 EKRVELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKH-GMKVIYG  177 (1041)
T ss_dssp             SCCCBCCBCCTTSTTTCCSCHHHHHHHHHHTTCSCEEECCBSCCTTHHHHHHHHHHH-TCCEEEE
T ss_pred             cceEEcccCCcCccccccCCHHHHHHHHHHCCCCEEEEecccchhhHHHHHHHHHHC-CCEEEEE
Confidence            5789999998654  2234799999999999998764321 1344455555556554 3444333

>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli}

Probab=94.61  E-value=0.15  Score=32.98  Aligned_cols=37  Identities=16%  Similarity=0.279  Sum_probs=24.9

Q ss_pred             ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+..+.  ..+++....+.+...|+..++...
T Consensus        74 G~iD~H~H~~~~g~~~~~~~~~~~~~~~~~G~Tt~~~~~  112 (473)
T 3e74_A           74 GMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMP  112 (473)
T ss_dssp             CEEEEEECC---------CHHHHHHHHHHTTEEEEEECC
T ss_pred             CEEEEecccCCCCCCcHHHHHHHHHHHHhCCEEEEEcCc
Confidence            3899999996532  235677778888899999887665

>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis}

Probab=94.59  E-value=0.19  Score=32.02  Aligned_cols=37  Identities=19%  Similarity=0.262  Sum_probs=27.0

Q ss_pred             ceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+....+  .++.....+.+...||..++...
T Consensus        61 GlID~H~H~~~~~~~~~e~~~~~~~~~~~~GvTt~~~~~   99 (452)
T 2gwn_A           61 GCIDDQVHFREPGLTHKATIASESRAAVAGGVTSFMDMP   99 (452)
T ss_dssp             CEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECS
T ss_pred             CEEeeccccCCCCCCcHHHHHHHHHHHHhCCeEEEEcCC
Confidence            38999999975332  34666667777889999877654

>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A*

Probab=94.57  E-value=0.047  Score=34.31  Aligned_cols=47  Identities=13%  Similarity=0.169  Sum_probs=30.0

Q ss_pred             eEeeccCCCCCcCC------CCHH-------HHHHHHHhcCCcEEEeeccChhhHHHHHH
Q 035377            3 LFDAHCHLQDPRIF------HKAP-------QLIATTVNSGVLHFAVNGVSEEDWNLVKD   49 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~------~~~~-------~~~~~~~~~gv~~~~~~~~~~~~~~~~~~   49 (66)
                      +||+|+|+....+.      .+.+       ..++++...|+..+...+......++.++
T Consensus        61 liD~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~l~~~i~  120 (426)
T 2r8c_A           61 LIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVE  120 (426)
T ss_dssp             EEEEEECTTCCSSCHHHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEECSSCCHHHHHHHH
T ss_pred             eEeeeeccccccCCchhhccCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCchHHHHHHHH
Confidence            89999999764321      1111       33456678999999888866554444433

>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV}

Probab=94.16  E-value=0.18  Score=32.23  Aligned_cols=11  Identities=36%  Similarity=0.392  Sum_probs=9.1

Q ss_pred             ceEeeccCCCC
Q 035377            2 KLFDAHCHLQD   12 (66)
Q Consensus         2 ~~iDsH~Hl~~   12 (66)
                      .+||+|+|+..
T Consensus        74 GlID~H~Hl~~   84 (472)
T 4dzh_A           74 GLVNAHTHNPM   84 (472)
T ss_dssp             CEEEEEECGGG
T ss_pred             CccccccChhh
Confidence            38999999964

>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C*

Probab=93.81  E-value=0.13  Score=34.42  Aligned_cols=30  Identities=33%  Similarity=0.481  Sum_probs=23.2

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV   39 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~   39 (66)
                      +||+|+|+..+.       ...++...||..++..|+
T Consensus       132 lID~HvHl~~p~-------~~~~al~~GvTTv~d~g~  161 (569)
T 1e9y_B          132 GIDTHIHFISPQ-------QIPTAFASGVTTMIGGGT  161 (569)
T ss_dssp             EEEEEEETTCTT-------HHHHHHHTTEEEEEEECC
T ss_pred             EEEEeecCCCcH-------HHHHHHhCCeeEEEcCCc
Confidence            899999996432       257788899998888764

>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}

Probab=93.64  E-value=0.063  Score=33.39  Aligned_cols=37  Identities=16%  Similarity=0.182  Sum_probs=24.5

Q ss_pred             ceEeeccCCCCC----cC-CCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDP----RI-FHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~----~~-~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+...    .. .+++.....++...||..++..+
T Consensus        58 GlID~H~H~~~~~~~~~~~~e~~~~~~~~~l~~GvTtv~d~~   99 (396)
T 2vhl_A           58 GMIDIHIHGGYGADTMDASFSTLDIMSSRLPEEGTTSFLATT   99 (396)
T ss_dssp             CEEEEEECEETTEEGGGCSHHHHHHHHHHGGGGTEEEEEEEC
T ss_pred             CEEEEeecCCcCccccCCCHHHHHHHHHHHHcCCeeEEEecc
Confidence            389999999642    11 11233346677889999888765

>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*

Probab=93.61  E-value=0.051  Score=32.00  Aligned_cols=25  Identities=4%  Similarity=0.009  Sum_probs=17.9

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEE
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFA   35 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~   35 (66)
                      |+++|.|+|         +.+.+++|.+. ++.+.
T Consensus         7 M~~~D~hvh---------~~e~~~~A~~~-~~~i~   31 (212)
T 1v77_A            7 VKFIEMDIR---------DKEAYELAKEW-FDEVV   31 (212)
T ss_dssp             CCCEEEEEC---------SHHHHHHHHHH-CSEEE
T ss_pred             eEEEEeCcC---------HHHHHHHHHHH-hcEEE
Confidence            558999999         46667777776 66543

>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*

Probab=93.59  E-value=0.41  Score=35.13  Aligned_cols=62  Identities=16%  Similarity=-0.002  Sum_probs=40.4

Q ss_pred             CceEeeccCCCCCc--CCCCHHHHHHHHHh--cCCcEEEeec-cChhhHHHHHHHHHhCCCeEeeeee
Q 035377            1 MKLFDAHCHLQDPR--IFHKAPQLIATTVN--SGVLHFAVNG-VSEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         1 m~~iDsH~Hl~~~~--~~~~~~~~~~~~~~--~gv~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      |+++|.|||-...-  -...+++++++|++  .|+..+-++= .+.....+..+.+++ .++.+-.|+
T Consensus         5 ~~fvdLH~HT~~SlLDG~~~~~elv~~A~~~~~G~~alAITDH~~~~G~~~f~~~a~~-~gIk~I~G~   71 (1220)
T 2hpi_A            5 LKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATA-MGVKPIIGY   71 (1220)
T ss_dssp             CCCCCCSBCCTTSTTTCCCCHHHHHHHHHHHCCSSCEEEEEEETCCTTHHHHHHHHHT-TTCEEEEEE
T ss_pred             CcEeEcccccCCCcccccCCHHHHHHHHHhccCCCCEEEEEecCcchhHHHHHHHHHH-cCCeEEEEE
Confidence            56899999987542  23579999999999  9998764431 123333444555555 356666554

>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti}

Probab=93.58  E-value=0.23  Score=32.36  Aligned_cols=36  Identities=17%  Similarity=0.109  Sum_probs=27.2

Q ss_pred             eEeeccCCCCC----cCCCCHHHHHHHHHhcCCcEEEeec
Q 035377            3 LFDAHCHLQDP----RIFHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         3 ~iDsH~Hl~~~----~~~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      +||+|+|+..+    ...+++....+.+...|+..++...
T Consensus        52 ~ID~H~H~~~~~~~~~~~e~~~~~~~aa~~~GvTtv~~~~   91 (490)
T 3dc8_A           52 GIDPHTHLEMPFMGTYSSDDFESGTRAALAGGTTMVVDFA   91 (490)
T ss_dssp             EEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEeeccccCCCCCCCCCHHHHHHHHHHHHHcCEEeecccC
Confidence            89999999753    2345777778888889998876543

>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*

Probab=93.49  E-value=0.36  Score=30.03  Aligned_cols=46  Identities=15%  Similarity=-0.066  Sum_probs=27.3

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeec-c-----ChhhHHHHHHHHH
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNG-V-----SEEDWNLVKDMSE   52 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~-~-----~~~~~~~~~~l~~   52 (66)
                      +||.|+|+.. ..  ...+ ...|...|+..++... +     +.+.+....+.++
T Consensus        12 ~ID~HvH~~~-g~--~~~e-~~aa~~gGvTtvv~mpnt~p~~~~~~~~~~~~~~~~   63 (347)
T 2z26_A           12 PDDWHLHLRD-GD--MLKT-VVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRIL   63 (347)
T ss_dssp             CCEEEECCCS-HH--HHHH-HHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHH
T ss_pred             cceeeecCCC-CC--chhh-HHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHh
Confidence            7999999975 21  1122 2667778999877654 2     2344554444444

>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A*

Probab=93.48  E-value=0.29  Score=32.47  Aligned_cols=38  Identities=18%  Similarity=0.308  Sum_probs=27.8

Q ss_pred             ceEeeccCCCCCc-----CCCCHHHHHHHHHhcCCcEEEeecc
Q 035377            2 KLFDAHCHLQDPR-----IFHKAPQLIATTVNSGVLHFAVNGV   39 (66)
Q Consensus         2 ~~iDsH~Hl~~~~-----~~~~~~~~~~~~~~~gv~~~~~~~~   39 (66)
                      .+||+|+|+....     ..+++....+.+...|+..++..+.
T Consensus        56 GlID~H~H~~~~~~~~~~~~e~~~~~~~~~l~~GvTtv~d~~~   98 (559)
T 2fty_A           56 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFST   98 (559)
T ss_dssp             CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CEEeeccCcCccccccCCCHHHHHHHHHHHHhCcEEEEEECcC
Confidence            3899999997532     2346666677788899998877654

>2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9

Probab=93.02  E-value=0.25  Score=31.08  Aligned_cols=31  Identities=10%  Similarity=0.094  Sum_probs=18.7

Q ss_pred             HHHHhcCCcEEEeecc-ChhhHHHHHHHHHhC
Q 035377           24 ATTVNSGVLHFAVNGV-SEEDWNLVKDMSERH   54 (66)
Q Consensus        24 ~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~   54 (66)
                      +++...||..+...+. .++....+++..++.
T Consensus       120 ~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~  151 (439)
T 2i9u_A          120 KDLIKNGTTRVALFATLHKDSTIELFNMLIKS  151 (439)
T ss_dssp             HHHHHTTEEEEEEECCSCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCceEEEEccccccchHHHHHHHHHHc
Confidence            5677889998776553 444444555544443

>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9

Probab=92.75  E-value=0.22  Score=31.95  Aligned_cols=32  Identities=9%  Similarity=0.036  Sum_probs=21.0

Q ss_pred             HHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhC
Q 035377           23 IATTVNSGVLHFAVNGV-SEEDWNLVKDMSERH   54 (66)
Q Consensus        23 ~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~   54 (66)
                      +.++...|+..+...+. .++..+.+.+.+++.
T Consensus       124 ~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~  156 (475)
T 2ood_A          124 LDALLAAGTTTCQAFTSSSPVATEELFEEASRR  156 (475)
T ss_dssp             HHHHHHTTEEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCceEEEEecccCchhHHHHHHHHHHc
Confidence            56778899998877553 455556656655554

>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica}

Probab=92.73  E-value=0.13  Score=32.66  Aligned_cols=39  Identities=18%  Similarity=0.060  Sum_probs=21.1

Q ss_pred             HHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC-CeEeeeeec
Q 035377           23 IATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP-SVIPCFGVH   64 (66)
Q Consensus        23 ~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~-~i~~~~GiH   64 (66)
                      +.++.+.|+..+.......+   .+.+.+++.+ ..+.+.+++
T Consensus       138 ~~~~l~~GvTtv~d~~~~~~---~~~~~~~~~g~r~~~~~~~~  177 (468)
T 3lnp_A          138 IAEMIQSGTTTFADMYFYPQ---QSGEAALAAGIRAVCFAPVL  177 (468)
T ss_dssp             HHHHHHTTEEEEEECCSCHH---HHHHHHHHHTCEEEEEEEEC
T ss_pred             HHHHHhCCcEEEEEcccCHH---HHHHHHHHcCCeEEEecccc
Confidence            44567789887776544443   3334444433 344555554

>4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C*

Probab=92.46  E-value=0.14  Score=34.54  Aligned_cols=27  Identities=19%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV   36 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~   36 (66)
                      +||+|+|+..+.+       .+.|...|+..++.
T Consensus       133 ~ID~HvH~~~Pg~-------~~aAl~gGvTTvv~  159 (570)
T 4ac7_C          133 GIDTHVHFINPDQ-------VDVALANGITTLFG  159 (570)
T ss_dssp             EEEEEEECCCTTH-------HHHHHHTTEEEEEE
T ss_pred             EEecccccCCcch-------HHHHHhcCCeEEEe
Confidence            8999999965332       25678889988874

>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*

Probab=92.46  E-value=0.14  Score=34.54  Aligned_cols=27  Identities=19%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV   36 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~   36 (66)
                      +||+|+|+..+.+       .+.|...|+..++.
T Consensus       133 ~ID~HvH~~~Pg~-------~~aAl~gGvTTvv~  159 (570)
T 4ubp_C          133 GIDTHVHFINPDQ-------VDVALANGITTLFG  159 (570)
T ss_dssp             EEEEEEECCCTTH-------HHHHHHTTEEEEEE
T ss_pred             EEEcccCCCCcch-------HHHHHhcCCeEEEe
Confidence            8999999965332       25678889988874

>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18

Probab=92.46  E-value=0.38  Score=29.98  Aligned_cols=38  Identities=24%  Similarity=0.205  Sum_probs=24.7

Q ss_pred             ceEeeccCCCCCc-------CCCCHHH-------HHHHHHhcCCcEEEeecc
Q 035377            2 KLFDAHCHLQDPR-------IFHKAPQ-------LIATTVNSGVLHFAVNGV   39 (66)
Q Consensus         2 ~~iDsH~Hl~~~~-------~~~~~~~-------~~~~~~~~gv~~~~~~~~   39 (66)
                      .+||+|+|+....       +....++       ...++...||..+...++
T Consensus        64 GlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~  115 (418)
T 2qs8_A           64 GLMDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYVTFKSGFTTVRQVGD  115 (418)
T ss_dssp             CEEEEEECTTCCCCCTTTSCSCCCHHHHHHHHHHHHHHHHHTTEEEEEECCC
T ss_pred             CeeeeeeccccCCCCCchhhhcCCHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence            3899999996422       1123232       456778899998876654

>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6

Probab=92.31  E-value=0.16  Score=31.99  Aligned_cols=38  Identities=11%  Similarity=0.024  Sum_probs=26.8

Q ss_pred             ceEeeccCCCCCc----CCCCHHHHHHHHHhcCCcEEEeecc
Q 035377            2 KLFDAHCHLQDPR----IFHKAPQLIATTVNSGVLHFAVNGV   39 (66)
Q Consensus         2 ~~iDsH~Hl~~~~----~~~~~~~~~~~~~~~gv~~~~~~~~   39 (66)
                      .+||+|+|+....    ..++.....+.+...||..++..+.
T Consensus        52 GlID~H~H~~~~~~~~~~~e~~~~~~~~~~~~GvTtv~~~~~   93 (457)
T 1nfg_A           52 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQ   93 (457)
T ss_dssp             CEEEEEECCSCEETTEECSCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ceEeeccccccCcCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Confidence            3899999997311    2346666677778899998776553

>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*

Probab=92.13  E-value=0.28  Score=31.28  Aligned_cols=64  Identities=13%  Similarity=0.075  Sum_probs=41.4

Q ss_pred             ceEeeccCCC--CCcCCC-------C-------HHHHHHHHHhcCCcEEEeeccC--hhhHHHHHHHHHhCC-CeEeeee
Q 035377            2 KLFDAHCHLQ--DPRIFH-------K-------APQLIATTVNSGVLHFAVNGVS--EEDWNLVKDMSERHP-SVIPCFG   62 (66)
Q Consensus         2 ~~iDsH~Hl~--~~~~~~-------~-------~~~~~~~~~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~-~i~~~~G   62 (66)
                      .++++|-||.  .+.+..       +       ..+.+++.++.|+..++.+++.  -++...+.+++++-. +|..+.|
T Consensus        52 G~tl~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~Gg~tIVd~T~~g~GRd~~~l~~is~~tGv~IV~~TG  131 (360)
T 3tn4_A           52 GKTLIHEHFLFGYPGFQGDVTRGTFREDESLRVAVEAAEKMKRHGIQTVVDPTPNDCGRNPAFLRRVAEETGLNIICATG  131 (360)
T ss_dssp             CSEESSCEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTCCEEEECCCTTTTCCHHHHHHHHHHHCCEEEEEEC
T ss_pred             CCceeccCeeecChhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeEEECCCCCcCcCHHHHHHHHHHcCCCEEEeCc
Confidence            4688999973  222211       1       1233456788999999876531  246677777888765 5888889


Q ss_pred             ecC
Q 035377           63 VHP   65 (66)
Q Consensus        63 iHP   65 (66)
                      ++.
T Consensus       132 ~y~  134 (360)
T 3tn4_A          132 YYY  134 (360)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            874

>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9

Probab=92.09  E-value=0.23  Score=31.68  Aligned_cols=32  Identities=13%  Similarity=0.070  Sum_probs=19.6

Q ss_pred             HHHHhcCCcEEEeecc-Ch-----hhHHHHHHHHHhCC
Q 035377           24 ATTVNSGVLHFAVNGV-SE-----EDWNLVKDMSERHP   55 (66)
Q Consensus        24 ~~~~~~gv~~~~~~~~-~~-----~~~~~~~~l~~~~~   55 (66)
                      .++...||..+...+. .+     +.++...+..++.+
T Consensus       124 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~g  161 (492)
T 2paj_A          124 IELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLG  161 (492)
T ss_dssp             HHHHTTTEEEEEECCCCCCTTCSSCHHHHHHHHHHHTT
T ss_pred             HHHHhcCcEEEEechhhcccccccchHHHHHHHHHHcC
Confidence            3477889998877653 32     34556666666543

>2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri}

Probab=92.02  E-value=0.097  Score=32.26  Aligned_cols=37  Identities=24%  Similarity=0.431  Sum_probs=24.3

Q ss_pred             ceEeeccCCCCCcCCC--CHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDPRIFH--KAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~--~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .+||+|+|+....+.+  .......++...||..++..+
T Consensus        62 GlID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~  100 (386)
T 2vun_A           62 GLLDTHVHVSGGDYAPRQKTMDFISSALHGGVTTMISAG  100 (386)
T ss_dssp             CEEEEEECCCSTTEEGGGTEESHHHHHHTTTEEEEEECC
T ss_pred             ceeeccccccCCCcChhHHHHHHHHHHHhCCceEEEecc
Confidence            3899999997422211  111256778889999887754

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=91.76  E-value=0.44  Score=28.91  Aligned_cols=56  Identities=13%  Similarity=0.220  Sum_probs=34.9

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecC
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHP   65 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP   65 (66)
                      .+|.|....      +++..++.+.++|.+.+.+-.-..+...+.++..+++ ++.+.+-++|
T Consensus        88 ~ldvHLmv~------~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~-G~k~Gvalnp  143 (246)
T 3inp_A           88 GMDVHLMVK------PVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSF-GIQAGLALNP  143 (246)
T ss_dssp             CEEEEEECS------SCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTT-TSEEEEEECT
T ss_pred             eEEEEEeeC------CHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHc-CCeEEEEecC
Confidence            467776643      3466777777888776554443334566667766665 5566666666

>4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A*

Probab=91.76  E-value=0.34  Score=30.79  Aligned_cols=45  Identities=20%  Similarity=0.132  Sum_probs=31.3

Q ss_pred             HHHHHHhcCCcEEEeeccC--------h--------hhHHHHHHHHHhCCC-eEeeeeecCC
Q 035377           22 LIATTVNSGVLHFAVNGVS--------E--------EDWNLVKDMSERHPS-VIPCFGVHPW   66 (66)
Q Consensus        22 ~~~~~~~~gv~~~~~~~~~--------~--------~~~~~~~~l~~~~~~-i~~~~GiHP~   66 (66)
                      .++.+.+.||++.++..+.        .        ..++.+.++++++|+ +.+.+.++|+
T Consensus        95 rl~~MD~~GId~~Vl~~~~pg~~~~~d~~~a~~~~r~~Nd~l~~~~~~~P~Rf~g~a~v~~~  156 (373)
T 4inf_A           95 RIADMDATGIDKAILALTSPGVQPLHDLDEARTLATRANDTLADACQKYPDRFIGMGTVAPQ  156 (373)
T ss_dssp             HHHHHHHTTCCEEEEEECTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHSTTTEEECBCCCTT
T ss_pred             HHHHHHHCCCcEEEEccCCccccccCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEecCCC
Confidence            7888999999976554221        1        246678888999997 5566666663

>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima}

Probab=91.50  E-value=0.17  Score=31.60  Aligned_cols=17  Identities=18%  Similarity=0.270  Sum_probs=13.3

Q ss_pred             HHHHHHHhcCCcEEEee
Q 035377           21 QLIATTVNSGVLHFAVN   37 (66)
Q Consensus        21 ~~~~~~~~~gv~~~~~~   37 (66)
                      ..+.++.+.||..++..
T Consensus       102 ~~~~~~~~~GvTtv~~~  118 (396)
T 3ooq_A          102 PAIERALAGGVTSVMIV  118 (396)
T ss_dssp             HHHHHHHTTTEEEEEEC
T ss_pred             HHHHHHHhCCeEEEecc
Confidence            46788999999887654

>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A

Probab=91.21  E-value=0.34  Score=30.09  Aligned_cols=18  Identities=17%  Similarity=0.139  Sum_probs=11.7

Q ss_pred             HHHHhcCCcEEEeeccCh
Q 035377           24 ATTVNSGVLHFAVNGVSE   41 (66)
Q Consensus        24 ~~~~~~gv~~~~~~~~~~   41 (66)
                      .++...|+..++..+...
T Consensus       101 ~~~l~~GvTtv~d~~~~~  118 (406)
T 1p1m_A          101 MEMARHGIAGFVDMYFHE  118 (406)
T ss_dssp             HHHHTTTEEEEEEEESSH
T ss_pred             HHHHhcCcEEEEechhCH
Confidence            345578988877666443

>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*

Probab=91.18  E-value=0.55  Score=29.46  Aligned_cols=11  Identities=36%  Similarity=0.661  Sum_probs=9.0

Q ss_pred             ceEeeccCCCC
Q 035377            2 KLFDAHCHLQD   12 (66)
Q Consensus         2 ~~iDsH~Hl~~   12 (66)
                      .+||+|+|+..
T Consensus        58 G~ID~H~H~~~   68 (456)
T 3ls9_A           58 GLINSHQHLYE   68 (456)
T ss_dssp             CEEEEEECGGG
T ss_pred             Ceeecccccch
Confidence            38999999953

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=91.12  E-value=0.42  Score=28.47  Aligned_cols=56  Identities=13%  Similarity=0.217  Sum_probs=31.1

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecC
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHP   65 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP   65 (66)
                      .+|.|.+...      ++..++.+.++|.+.+.+-+...+...+.++..+++ ++...+-++|
T Consensus        66 ~~dvhLmv~~------p~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~-G~k~gval~p  121 (228)
T 3ovp_A           66 FFDMHMMVSK------PEQWVKPMAVAGANQYTFHLEATENPGALIKDIREN-GMKVGLAIKP  121 (228)
T ss_dssp             CEEEEEECSC------GGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHT-TCEEEEEECT
T ss_pred             cEEEEEEeCC------HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHc-CCCEEEEEcC
Confidence            4788877643      344566666677765544433333455555555554 4445555555

>2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17

Probab=90.58  E-value=0.39  Score=30.43  Aligned_cols=18  Identities=28%  Similarity=0.231  Sum_probs=12.9

Q ss_pred             HHHHHHhcCCcEEEeecc
Q 035377           22 LIATTVNSGVLHFAVNGV   39 (66)
Q Consensus        22 ~~~~~~~~gv~~~~~~~~   39 (66)
                      ...++...||..++..+.
T Consensus       120 ~~~~~l~~GvTtv~d~~~  137 (458)
T 2p9b_A          120 NATTLLESGVTTIRTLGD  137 (458)
T ss_dssp             HHHHHHHTTEEEEEESCC
T ss_pred             HHHHHHHcCCcEEEeCCC
Confidence            456677889988877654

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=90.40  E-value=0.31  Score=29.76  Aligned_cols=36  Identities=17%  Similarity=0.171  Sum_probs=22.1

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH   54 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~   54 (66)
                      .++.++++.++|+++++++-..+++.+...+.++++
T Consensus       105 ~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~  140 (252)
T 3tha_A          105 LEKFVKKAKSLGICALIVPELSFEESDDLIKECERY  140 (252)
T ss_dssp             HHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHc
Confidence            455666666666666666665556655555555555

>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa}

Probab=90.28  E-value=0.13  Score=32.40  Aligned_cols=10  Identities=40%  Similarity=0.511  Sum_probs=8.5

Q ss_pred             ceEeeccCCC
Q 035377            2 KLFDAHCHLQ   11 (66)
Q Consensus         2 ~~iDsH~Hl~   11 (66)
                      .+||+|+|++
T Consensus        67 G~ID~H~H~~   76 (451)
T 4dyk_A           67 GLVNAHGHSA   76 (451)
T ss_dssp             CEEECCCCGG
T ss_pred             cccchhhChh
Confidence            3899999994

>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16

Probab=90.14  E-value=0.44  Score=29.94  Aligned_cols=21  Identities=14%  Similarity=-0.187  Sum_probs=14.3

Q ss_pred             HHHHHHhcCCcEEEeeccChh
Q 035377           22 LIATTVNSGVLHFAVNGVSEE   42 (66)
Q Consensus        22 ~~~~~~~~gv~~~~~~~~~~~   42 (66)
                      .++++...||..++..+..++
T Consensus       137 ~~~~~l~~GvTtv~d~~~~~~  157 (420)
T 2imr_A          137 GADTLTRLGAGGVGDIVWAPE  157 (420)
T ss_dssp             HHHHHHHTTCCCEEEEECSHH
T ss_pred             HHHHHHhcCcEEEEEccCCHH
Confidence            345677889998877665443

>3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*

Probab=89.78  E-value=0.79  Score=28.36  Aligned_cols=38  Identities=21%  Similarity=0.266  Sum_probs=23.7

Q ss_pred             ceEeeccCCCCCc------CCCCHHH-------HHHHHHhcCCcEEEeecc
Q 035377            2 KLFDAHCHLQDPR------IFHKAPQ-------LIATTVNSGVLHFAVNGV   39 (66)
Q Consensus         2 ~~iDsH~Hl~~~~------~~~~~~~-------~~~~~~~~gv~~~~~~~~   39 (66)
                      .+||+|+|+....      +....++       ..+++...||..++..+.
T Consensus        59 GlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~  109 (408)
T 3be7_A           59 GLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNVGA  109 (408)
T ss_dssp             CEEEEEECCSSCCCCSGGGTTCCTHHHHHHHHHHHHHHHTTTEEEEEECCC
T ss_pred             CceeeeEcccCCCCcchhhhcCCHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence            3899999997111      1111111       456778899998877664

>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*

Probab=88.22  E-value=1.8  Score=26.92  Aligned_cols=11  Identities=45%  Similarity=0.552  Sum_probs=9.2

Q ss_pred             ceEeeccCCCC
Q 035377            2 KLFDAHCHLQD   12 (66)
Q Consensus         2 ~~iDsH~Hl~~   12 (66)
                      .|||+|+|+..
T Consensus        67 G~ID~H~H~~~   77 (416)
T 2q09_A           67 GLIDCHTHLIF   77 (416)
T ss_dssp             CEEEEEECCCC
T ss_pred             cccccccCcch
Confidence            38999999964

>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A

Probab=88.14  E-value=0.84  Score=29.40  Aligned_cols=31  Identities=13%  Similarity=0.224  Sum_probs=17.6

Q ss_pred             HHHHhcCCcEEEeecc-ChhhHHHHHHHHHhC
Q 035377           24 ATTVNSGVLHFAVNGV-SEEDWNLVKDMSERH   54 (66)
Q Consensus        24 ~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~   54 (66)
                      .++.+.|+..++..++ .++....+.+.+.+.
T Consensus       151 ~e~l~~G~Tt~~~~~~~~~~~~~~~~~a~~~~  182 (476)
T 4aql_A          151 RRTLKNGTTTACYFATIHTDSSLLLADITDKF  182 (476)
T ss_dssp             HHHHHTTEEEEEEECCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCeeEEEEecccCchHHHHHHHHHHHh
Confidence            4677789887765443 344444445544443

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=87.75  E-value=0.88  Score=27.93  Aligned_cols=36  Identities=11%  Similarity=0.140  Sum_probs=21.7

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH   54 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~   54 (66)
                      .++.++++.++|+++++++-..+++..+..+.++++
T Consensus       114 ~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~  149 (271)
T 3nav_A          114 IDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKF  149 (271)
T ss_dssp             HHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHc
Confidence            455666666666666666555555555555555555

>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}

Probab=87.33  E-value=0.2  Score=29.51  Aligned_cols=11  Identities=45%  Similarity=0.767  Sum_probs=9.2

Q ss_pred             ceEeeccCCCC
Q 035377            2 KLFDAHCHLQD   12 (66)
Q Consensus         2 ~~iDsH~Hl~~   12 (66)
                      .+||+|+|+..
T Consensus        59 G~ID~H~H~~~   69 (403)
T 3mtw_A           59 GLIDMHVHLDS   69 (403)
T ss_dssp             CEEEEEECTTC
T ss_pred             ChheeeeCCcc
Confidence            38999999864

>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A

Probab=87.32  E-value=1.5  Score=27.44  Aligned_cols=11  Identities=27%  Similarity=0.616  Sum_probs=9.2

Q ss_pred             ceEeeccCCCC
Q 035377            2 KLFDAHCHLQD   12 (66)
Q Consensus         2 ~~iDsH~Hl~~   12 (66)
                      .+||+|+|+..
T Consensus        60 GlID~H~Hl~~   70 (430)
T 1ra0_A           60 PFVEPHIHLDT   70 (430)
T ss_dssp             CEEEEEECTTT
T ss_pred             cccccccchhh
Confidence            38999999964

>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*

Probab=86.84  E-value=0.69  Score=28.57  Aligned_cols=36  Identities=8%  Similarity=0.040  Sum_probs=22.7

Q ss_pred             eEeeccCCCCC-cCCC-----C---HHHHHHHHHhcCCcEEEeec
Q 035377            3 LFDAHCHLQDP-RIFH-----K---APQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         3 ~iDsH~Hl~~~-~~~~-----~---~~~~~~~~~~~gv~~~~~~~   38 (66)
                      +||+|+|+... .+..     .   +.....++...|+..+...+
T Consensus        55 lID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~   99 (382)
T 1yrr_A           55 FIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTL   99 (382)
T ss_dssp             EEEEEESEETTEESSSSTTTSSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEEEeecccCCcCccccccCCCHHHHHHHHHHHHhCCeEEEEeec
Confidence            89999997421 1111     2   22355677789999877654

>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*

Probab=86.68  E-value=0.51  Score=29.18  Aligned_cols=36  Identities=17%  Similarity=0.167  Sum_probs=21.5

Q ss_pred             ceEeeccCCCCC----cC-CCCHHHHHHHHHhcCCcEEEee
Q 035377            2 KLFDAHCHLQDP----RI-FHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         2 ~~iDsH~Hl~~~----~~-~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      .+||+|+|+...    .+ ..+.+....++...|+..++..
T Consensus        63 G~iD~H~H~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~  103 (390)
T 1onw_A           63 GFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGL  103 (390)
T ss_dssp             CEEEEEECTTCCBCTTSGGGBCCCCCHHHHHHTTEEEEEEC
T ss_pred             CeeEeeECccccCccccccccCHHHHHHHHHHCCeeEEecC
Confidence            389999998521    11 1122234567777888776654

>4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A*

Probab=86.40  E-value=0.46  Score=33.42  Aligned_cols=31  Identities=26%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccC
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVS   40 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~   40 (66)
                      +||+|+|+..+.       ....+...|+..++..|+.
T Consensus       403 fID~HvHl~~P~-------~~~eALasGVTTvv~gGtg  433 (840)
T 4gy7_A          403 AIDCHVHYICPQ-------LVYEAISSGITTLVGGGTG  433 (840)
T ss_dssp             EEEEEEECCCTH-------HHHHHHHHTEEEEEEECSS
T ss_pred             eeeeccCCCCCC-------chHHHHHhhHHHHHhCCCc
Confidence            899999986532       2345556788877765543

>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A*

Probab=86.24  E-value=1.7  Score=27.62  Aligned_cols=10  Identities=20%  Similarity=0.242  Sum_probs=8.5

Q ss_pred             ceEeeccCCC
Q 035377            2 KLFDAHCHLQ   11 (66)
Q Consensus         2 ~~iDsH~Hl~   11 (66)
                      .+||+|+|+.
T Consensus        51 GfId~H~H~~   60 (453)
T 3mdu_A           51 GMPNLHSHAF   60 (453)
T ss_dssp             CEEEEEECGG
T ss_pred             cceecccchH
Confidence            3899999984

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=85.31  E-value=1.4  Score=26.92  Aligned_cols=36  Identities=14%  Similarity=0.184  Sum_probs=19.1

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH   54 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~   54 (66)
                      .++.++++.++|+++++++-..+++..+..+.++++
T Consensus       112 ~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~  147 (267)
T 3vnd_A          112 IDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAH  147 (267)
T ss_dssp             HHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHc
Confidence            355555555555555555544455555555555544

>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0

Probab=85.15  E-value=2.9  Score=26.18  Aligned_cols=64  Identities=9%  Similarity=0.049  Sum_probs=41.8

Q ss_pred             ceEeeccCCCCC-c----------CCCCHHH---HHHHHHhcCCcEEEeeccC--hhhHHHHHHHHHhCC-CeEeeeeec
Q 035377            2 KLFDAHCHLQDP-R----------IFHKAPQ---LIATTVNSGVLHFAVNGVS--EEDWNLVKDMSERHP-SVIPCFGVH   64 (66)
Q Consensus         2 ~~iDsH~Hl~~~-~----------~~~~~~~---~~~~~~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~-~i~~~~GiH   64 (66)
                      .+..+|=||... .          ..++.+.   -+++.++.|+..++.+++.  -++...+.+++++.. +|..+.|+|
T Consensus        17 G~t~~HEHl~~~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~G~~tiVd~t~~~~gR~~~~l~~is~~tgv~iv~~TG~y   96 (330)
T 3pnz_A           17 GFTYSHEHIVCVPAYWQERDADDLLLDDKEKSQLDVQDFADLGGKTIVDATAVDYGRRVLDVAQISKETGIQIVGTAGFN   96 (330)
T ss_dssp             CSEEEEECCSBCCHHHHTTTCGGGCBCCHHHHHHHHHHHHHTTCCEEEECCCGGGCBCHHHHHHHHHHHCCEEEEEEECC
T ss_pred             CCceeccCceecChhhhhcCCCcccccCHHHHHHHHHHHHHhCCCEEEECCCCccccCHHHHHHHHHHhCCEEEEeCCCC
Confidence            467788888531 1          0123344   4556788999999876531  245666777888765 599999998


Q ss_pred             C
Q 035377           65 P   65 (66)
Q Consensus        65 P   65 (66)
                      +
T Consensus        97 ~   97 (330)
T 3pnz_A           97 K   97 (330)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=85.06  E-value=3.7  Score=24.05  Aligned_cols=36  Identities=14%  Similarity=0.101  Sum_probs=26.3

Q ss_pred             HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377           20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus        20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      ++.++.+.+.|++.+++.....++.++..+.+++++
T Consensus        98 ~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g  133 (248)
T 1geq_A           98 RNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEG  133 (248)
T ss_dssp             HHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhC
Confidence            677788888888887776666667777777777653

>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}

Probab=83.42  E-value=0.49  Score=27.92  Aligned_cols=11  Identities=36%  Similarity=0.588  Sum_probs=9.2

Q ss_pred             ceEeeccCCCC
Q 035377            2 KLFDAHCHLQD   12 (66)
Q Consensus         2 ~~iDsH~Hl~~   12 (66)
                      .|||+|+|+..
T Consensus        60 GfID~H~H~~~   70 (426)
T 3mkv_A           60 GLIDLHVHVVA   70 (426)
T ss_dssp             CEEEEEECTTC
T ss_pred             ChhhhhhCccc
Confidence            38999999864

>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}

Probab=83.30  E-value=2.6  Score=26.65  Aligned_cols=31  Identities=16%  Similarity=0.153  Sum_probs=19.5

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      +||.|+|+.. ..  ...+.+ .|..-|+..++.+
T Consensus        30 ~ID~HvHlre-G~--~~~e~~-aA~aGG~Ttvi~m   60 (359)
T 3pnu_A           30 PLDMHLHLRD-NQ--MLELIA-PLSARDFCAAVIM   60 (359)
T ss_dssp             CEEEEECCCS-HH--HHHHHH-HHHHTTCSEEEEC
T ss_pred             cEEccccCCC-CC--cchhHH-HHHhCCCcEEEEC
Confidence            7999999975 11  122223 4555788887754

>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}

Probab=83.24  E-value=2.5  Score=26.66  Aligned_cols=40  Identities=13%  Similarity=0.116  Sum_probs=29.1

Q ss_pred             CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEe
Q 035377           18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIP   59 (66)
Q Consensus        18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~   59 (66)
                      +.++.++++.+.|++.++.+|...  .+.+.+.+++||++.+
T Consensus        74 d~~~~l~~l~~~g~d~Ii~~g~~~--~~~~~~vA~~~Pdv~f  113 (356)
T 3s99_A           74 DAERSIKRIARAGNKLIFTTSFGY--MDPTVKVAKKFPDVKF  113 (356)
T ss_dssp             HHHHHHHHHHHTTCSEEEECSGGG--HHHHHHHHTTCTTSEE
T ss_pred             HHHHHHHHHHHCCCCEEEECCHHH--HHHHHHHHHHCCCCEE
Confidence            456788888889999777665443  3457788899997544

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=82.67  E-value=4.4  Score=22.40  Aligned_cols=39  Identities=5%  Similarity=-0.187  Sum_probs=28.8

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      +...+.++++++.|+.-+++.|=..+....+.++.+++.
T Consensus        27 ~~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~g   65 (142)
T 2obb_A           27 PFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARG   65 (142)
T ss_dssp             TTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcC
Confidence            456889999999998766666645556777777777753

>2i5i_A UPF0249 protein EF_3048; putative cellobiose-phosphate cleavage protein, structural G joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis} SCOP: c.6.2.8

Probab=82.04  E-value=3.3  Score=25.08  Aligned_cols=46  Identities=17%  Similarity=0.169  Sum_probs=33.0

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH-hCCCeEeeeeec
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE-RHPSVIPCFGVH   64 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~-~~~~i~~~~GiH   64 (66)
                      ..+..=|.++.++|+-.-..+-++-..++.+.++++ ++|.  ..+|+|
T Consensus        18 ~~vN~gI~~~~~~G~ltstslMvn~p~~~~A~~~~k~~~p~--l~vGlH   64 (263)
T 2i5i_A           18 PAVTQGIIEAHKRGVVTSTTALPTSPYFLEAMESARISAPT--LAIGVH   64 (263)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEECTTSTTHHHHHHHHHHHCTT--CEEEEE
T ss_pred             hhHHHHHHHHHHCCcceEeeeccCCcHHHHHHHHHHHhCCC--CCEEEE
Confidence            345666777888888544344445677889999999 8887  477887

>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*

Probab=81.53  E-value=5  Score=24.98  Aligned_cols=49  Identities=8%  Similarity=-0.016  Sum_probs=30.7

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChh--------hHHHHHHHHHhCCCeEeeeeecC
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEE--------DWNLVKDMSERHPSVIPCFGVHP   65 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~--------~~~~~~~l~~~~~~i~~~~GiHP   65 (66)
                      ..+++.+..+.+.||+.++++..++.        +...++++.++.++...+++.+|
T Consensus        97 ~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yP  153 (304)
T 3fst_A           97 DELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP  153 (304)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Confidence            35778889999999999988865532        23345555555444444444433

>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}

Probab=80.62  E-value=3.7  Score=24.30  Aligned_cols=34  Identities=12%  Similarity=0.004  Sum_probs=25.6

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE   52 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~   52 (66)
                      ...+.+.+++.|+.++++.++.+++.+.+.+...
T Consensus       124 ~~~~a~~a~~~g~~GvV~sat~p~e~~~ir~~~~  157 (222)
T 4dbe_A          124 ADYIKNVIREISPKGIVVGGTKLDHITQYRRDFE  157 (222)
T ss_dssp             HHHHHHHHHHHCCSEEEECTTCHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhCCCEEEECCCCHHHHHHHHHhCC
Confidence            3667888889999999887777777776665543

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=80.59  E-value=4.1  Score=24.50  Aligned_cols=37  Identities=14%  Similarity=0.179  Sum_probs=26.5

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      .+..++++.++|+++++++...+++.....+.++++.
T Consensus       111 ~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~g  147 (262)
T 2ekc_A          111 LEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYV  147 (262)
T ss_dssp             HHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence            3566777788888887777766777777777777663

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=80.27  E-value=3.1  Score=24.59  Aligned_cols=33  Identities=15%  Similarity=-0.004  Sum_probs=25.0

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHH
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMS   51 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~   51 (66)
                      ...+.+.+++.|+.++++.++.+++...+.+..
T Consensus       117 v~~~a~~a~~~G~~GvV~sat~~~e~~~ir~~~  149 (215)
T 3ve9_A          117 YPYLREVARRVNPKGFVAPATRPSMISRVKGDF  149 (215)
T ss_dssp             HHHHHHHHHHHCCSEEECCTTSHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCceeeCCCCHHHHHHHHHhC
Confidence            667888889999999987777777776655543

>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP}

Probab=80.04  E-value=3.1  Score=26.31  Aligned_cols=11  Identities=27%  Similarity=0.389  Sum_probs=9.0

Q ss_pred             ceEeeccCCCC
Q 035377            2 KLFDAHCHLQD   12 (66)
Q Consensus         2 ~~iDsH~Hl~~   12 (66)
                      .+||+|+|+..
T Consensus        56 GlId~H~H~~~   66 (427)
T 3v7p_A           56 GFANPHLHLEF   66 (427)
T ss_dssp             CEEEEEECGGG
T ss_pred             CEeecccCcch
Confidence            38999999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	66
d1xwya1	260	c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {	2e-09
d1zzma1	259	c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV	5e-09
d1j6oa_	260	c.1.9.12 (A:) Hypothetical protein TM0667 {Thermot	1e-07
d1yixa1	265	c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH	6e-07

>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} Length = 260

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Deoxyribonuclease TatD (MttC)
species: Escherichia coli [TaxId: 562]

 Score = 49.2 bits (116), Expect = 2e-09
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 3  LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62
          +FD   +L   +       ++A   ++GV    + G +  +    + ++ ++ S     G
Sbjct: 1  MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAG 60

Query: 63 VHPW 66
          VHP 
Sbjct: 61 VHPH 64

>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} Length = 259

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Putative deoxyribonuclease YjjV
species: Escherichia coli [TaxId: 562]

 Score = 47.7 bits (112), Expect = 5e-09
 Identities = 14/66 (21%), Positives = 24/66 (36%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
           +  D HCH   P         +     +GV    V     E++  V  ++E +  +   
Sbjct: 3  CRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAA 62

Query: 61 FGVHPW 66
           G+HP 
Sbjct: 63 LGLHPG 68

>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} Length = 260

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Hypothetical protein TM0667
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.1 bits (103), Expect = 1e-07
 Identities = 15/64 (23%), Positives = 26/64 (40%)

Query: 3  LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62
          + D H HL   +       +I++   + +      GV+ ED     D+S+    +    G
Sbjct: 5  MVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFCSVG 64

Query: 63 VHPW 66
          VHP 
Sbjct: 65 VHPH 68

>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} Length = 265

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Putative deoxyribonuclease YcfH
species: Escherichia coli [TaxId: 562]

 Score = 41.9 bits (97), Expect = 6e-07
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 1  MKLFDAHCHLQDPR---IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSV 57
          M L D+HCHL       +      ++A      V        +   +  ++D+     +V
Sbjct: 1  MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNV 60

Query: 58 IPCFGVHPW 66
          +   GVHP 
Sbjct: 61 VFSCGVHPL 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	66
d1xwya1	260	Deoxyribonuclease TatD (MttC) {Escherichia coli [T	99.91
d1zzma1	259	Putative deoxyribonuclease YjjV {Escherichia coli	99.9
d1j6oa_	260	Hypothetical protein TM0667 {Thermotoga maritima [	99.9
d1yixa1	265	Putative deoxyribonuclease YcfH {Escherichia coli	99.89
d1bf6a_	291	Phosphotriesterase homology protein {Escherichia c	99.13
d1i0da_	331	Phosphotriesterase (parathion hydrolase, PTE) {Pse	98.74
d2ffia1	271	Putative 2-pyrone-4,6-dicarboxylic acid hydrolase	98.72
d2gwga1	342	4-oxalomesaconate hydratase LigJ {Rhodopseudomonas	97.93
d2f6ka1	306	Putative amidohydrolase LP2961 {Lactobacillus plan	97.69
d2hbva1	331	2-amino-3-carboxymuconate 6-semialdehyde decarboxy	97.58
d2icsa2	267	Putative adenine deaminase EF0837 {Enterococcus fa	97.34
d1m65a_	244	Hypothetical protein YcdX {Escherichia coli [TaxId	97.03
d1gkpa2	335	D-hydantoinase {Thermus sp. [TaxId: 275]}	96.7
d1ynya2	332	D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}	96.67
d2r8ca2	311	Uncharacterized protein EAJ56179 {Unidentified org	96.52
d1kcxa2	334	Dihydropyrimidinase related protein-1 {Mouse (Mus	96.45
d1yrra2	297	N-acetylglucosamine-6-phosphate deacetylase, NagA,	96.44
d1xrta2	310	Two-domain dihydroorotase {Aquifex aeolicus [TaxId	96.41
d1o12a2	288	N-acetylglucosamine-6-phosphate deacetylase, NagA,	96.38
d1nfga2	330	D-hydantoinase {Burkholderia pickettii [TaxId: 329	96.37
d2ftwa2	334	Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli	96.34
d2vhla2	301	N-acetylglucosamine-6-phosphate deacetylase, NagA,	96.33
d3be7a2	303	Zn-dependent arginine carboxypeptidase {Unidentifi	96.27
d2qs8a2	310	Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId:	96.11
d1ra0a2	320	Cytosine deaminase catalytic domain {Escherichia c	95.9
d1onwa2	284	Isoaspartyl dipeptidase, catalytic domain {Escheri	95.85
d2anua1	229	Hypothetical protein TM0559 {Thermotoga maritima [	95.82
d2fvka2	384	Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc	95.79
d2dvta1	325	Thermophilic reversible gamma-resorcylate decarbox	95.77
d1gkra2	325	L-hydantoinase {Arthrobacter aurescens [TaxId: 436	95.47
d2p9ba2	324	Uncharacterized protein BL1453 {Bifidobacterium lo	94.58
d1j5sa_	451	Uronate isomerase TM0064 {Thermotoga maritima [Tax	93.25
d2imra2	308	Hypothetical protein DR0824 {Deinococcus radiodura	93.16
d1s3la_	165	Putative phosphodiesterase MJ0936 {Methanococcus j	93.11
d2ooda2	325	Guanine deaminase {Bradyrhizobium japonicum [TaxId	91.86
d1e9yb2	389	alpha-subunit of urease, catalytic domain {Helicob	91.7
d1ejxc2	385	alpha-subunit of urease, catalytic domain {Klebsie	91.19
d2qeec1	415	Uncharacterized protein BH0493 {Bacillus haloduran	91.09
d4ubpc2	390	alpha-subunit of urease, catalytic domain {Bacillu	90.68
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	90.41
d2paja2	336	Hypothetical protein GOS_1943094 {Environmental sa	90.27
d2q09a2	301	Probable 4-imidazolone-5-propanoate amidohydrolase	90.03
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	89.73
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	89.3
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	89.07
d2puza2	301	Imidazolonepropionase {Agrobacterium tumefaciens [	89.05
d2bb0a2	300	Imidazolonepropionase {Bacillus subtilis [TaxId: 1	88.41
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	88.06
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	85.12
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	85.04
d1b5ta_	275	Methylenetetrahydrofolate reductase {Escherichia c	84.63
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	83.38

>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Deoxyribonuclease TatD (MttC)
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1e-24  Score=132.37  Aligned_cols=64  Identities=19%  Similarity=0.369  Sum_probs=62.4

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      +||+||||+++.|.+|+++++++|+++||++++++|+++++|++++++++++|++++++|+|||
T Consensus         1 liD~H~HL~~~~f~~d~~~vl~~a~~~gV~~ii~~~~~~~~~~~~~~la~~~~~v~~a~GiHP~   64 (260)
T d1xwya1           1 MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPH   64 (260)
T ss_dssp             CEEEEECTTSGGGTTTHHHHHHHHHHTTCCEEEECCCSHHHHHHHHHHHHHSTTEEEEECCCGG
T ss_pred             CEEEEeCCCChHHhCCHHHHHHHHHHCCCCEEEEecCCHHHHHHHHHHHHhCCcccchhhcCcc
Confidence            5999999999999999999999999999999999999999999999999999999999999997

>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Putative deoxyribonuclease YjjV
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.8e-24  Score=129.03  Aligned_cols=66  Identities=21%  Similarity=0.422  Sum_probs=64.0

Q ss_pred             CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      |++||+||||+...+.+|.+++++++++.||.+++++|+++++|+++.++++++|++++++|+|||
T Consensus         3 ~k~ID~H~HLd~~~~~~d~~~~l~~a~~~gV~~~v~~~t~~~~~~~~~~l~~~~~~i~~~~GiHP~   68 (259)
T d1zzma1           3 CRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPG   68 (259)
T ss_dssp             CCEEESCBCTTSTTTTTCHHHHHHHHHHTTEEEEEEECCSGGGHHHHHHHHHHCTTEEEEECCCGG
T ss_pred             CcEEEeCcCCCChhhCcCHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCccccccccCCch
Confidence            789999999999999999999999999999999999999999999999999999999999999997

>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Hypothetical protein TM0667
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.1e-24  Score=131.00  Aligned_cols=65  Identities=23%  Similarity=0.324  Sum_probs=63.0

Q ss_pred             ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      ++||+||||+...+.+|+++++++|+++||.+++++|+++++|++++++++++|++++++|+|||
T Consensus         4 ~lIDsH~HLd~~~~~~d~~~vi~~a~~~gV~~ii~~~~~~~~~~~~~~la~~~~~i~~a~GiHP~   68 (260)
T d1j6oa_           4 HMVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFCSVGVHPH   68 (260)
T ss_dssp             CEEEEEECTTSGGGTTTHHHHHHTTTTTTEEEEEEECSSHHHHHHHHHHHTTCTTEEEEECCCGG
T ss_pred             CcEEeccCCCChhhCcCHHHHHHHHHHCCCCEEEEecCCHHHHHHHHHHHHhccccccccccChh
Confidence            68999999999999999999999999999999999999999999999999999999999999997

>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Putative deoxyribonuclease YcfH
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.2e-23  Score=127.58  Aligned_cols=66  Identities=23%  Similarity=0.414  Sum_probs=61.7

Q ss_pred             CceEeeccCCCC---CcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377            1 MKLFDAHCHLQD---PRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus         1 m~~iDsH~Hl~~---~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      |++||+||||+.   +.+.+++++++++|+++||++++++|++++++.++++++++||++++++|+|||
T Consensus         1 M~lIDtH~Hld~~~~e~~~~d~~~vi~~a~~~gv~~ii~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   69 (265)
T d1yixa1           1 MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVVFSCGVHPL   69 (265)
T ss_dssp             CCEEEEEECGGGSCTTTTCSSHHHHHHHHHHTTEEEEEECCSSHHHHHHHHHHHCSCTTEEEEECCCTT
T ss_pred             CEEEEecccCCccccchhhcCHHHHHHHHHHcCCCEEEEeeCCHHHHHHHHHHHHhccccccccccccc
Confidence            899999999974   445679999999999999999999999999999999999999999999999996

>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Phosphotriesterase-like
domain: Phosphotriesterase homology protein
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1.1e-11  Score=74.47  Aligned_cols=65  Identities=17%  Similarity=0.113  Sum_probs=48.2

Q ss_pred             ceEeeccCCC--CCcCC-------CC---HHHHHHHHHhcCCcEEEeecc--ChhhHHHHHHHHHhCC-CeEeeeeecCC
Q 035377            2 KLFDAHCHLQ--DPRIF-------HK---APQLIATTVNSGVLHFAVNGV--SEEDWNLVKDMSERHP-SVIPCFGVHPW   66 (66)
Q Consensus         2 ~~iDsH~Hl~--~~~~~-------~~---~~~~~~~~~~~gv~~~~~~~~--~~~~~~~~~~l~~~~~-~i~~~~GiHP~   66 (66)
                      .++|+||||.  ...+.       ++   ..+.+++++++||++++.+++  ...+++.+.+++++++ ++++++|+||+
T Consensus         6 G~~dtH~Hl~~d~~~~~~d~~~~~d~~~~~~~~l~~~~~~Gv~~iV~~t~~~~g~d~~~~~~la~~~~~~i~~~~G~hp~   85 (291)
T d1bf6a_           6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD   85 (291)
T ss_dssp             SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCG
T ss_pred             cceeeccCccCChhHhccChHhhhhhHHHHHHHHHHHHHcCCCEEEEcCCCccccCHHHHHHHHHHcCCCeeeeeeecCc
Confidence            5899999994  22222       22   335578999999999876654  2357888889999987 49999999983

>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Phosphotriesterase-like
domain: Phosphotriesterase (parathion hydrolase, PTE)
species: Pseudomonas diminuta [TaxId: 293]

Probab=98.74  E-value=6.4e-09  Score=61.49  Aligned_cols=65  Identities=17%  Similarity=0.181  Sum_probs=47.5

Q ss_pred             ceEeeccCCCC---------CcCCCC-------HHHHHHHHHhcCCcEEEeeccC--hhhHHHHHHHHHhCCC-eEeeee
Q 035377            2 KLFDAHCHLQD---------PRIFHK-------APQLIATTVNSGVLHFAVNGVS--EEDWNLVKDMSERHPS-VIPCFG   62 (66)
Q Consensus         2 ~~iDsH~Hl~~---------~~~~~~-------~~~~~~~~~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~~-i~~~~G   62 (66)
                      .++|+|+|+..         +.+..+       ..+.++++++.||..++.+++.  ..+.+.+.+++++++. ++.++|
T Consensus        16 G~~d~H~Hl~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~a~~~GvttvVd~~~~~~~~d~~~l~~~~~~~~~~~~~~~g   95 (331)
T d1i0da_          16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAATG   95 (331)
T ss_dssp             CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEEECEEE
T ss_pred             CCEeeeeCcccCcccccccCccccccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCcCCHHHHHHHHHhcCCCEEEEEE
Confidence            47999999952         123333       3334667788999998876543  3567888889888875 999999


Q ss_pred             ecCC
Q 035377           63 VHPW   66 (66)
Q Consensus        63 iHP~   66 (66)
                      +||+
T Consensus        96 ~h~~   99 (331)
T d1i0da_          96 LWFD   99 (331)
T ss_dssp             CCSC
T ss_pred             EecC
Confidence            9985

>d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699
species: Pseudomonas putida [TaxId: 303]

Probab=98.72  E-value=1.1e-08  Score=58.23  Aligned_cols=63  Identities=11%  Similarity=0.074  Sum_probs=44.7

Q ss_pred             CceEeeccCCCCC------------cCCCCHHHHHHHHHhcCCcEEEeecc--ChhhHHHHHHHHHhCCCeEeeeee
Q 035377            1 MKLFDAHCHLQDP------------RIFHKAPQLIATTVNSGVLHFAVNGV--SEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus         1 m~~iDsH~Hl~~~------------~~~~~~~~~~~~~~~~gv~~~~~~~~--~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      |..||+|+|+...            ....+++++++.++++||++.++++.  .....+...+..+++|..+..++.
T Consensus         3 ~~~ID~H~Hl~~~~~~~~~~~~~~~~~~~~~e~ll~~m~~~gI~~~vl~~~~~~~~~n~~~~~~~~~~~~~~~~~~~   79 (271)
T d2ffia1           3 LTAIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLSALQTVPGQLRGVVM   79 (271)
T ss_dssp             CCCEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBCCGGGTTCCHHHHHHHHHSTTTBCCBBC
T ss_pred             cCEEeeeecccCCccccccccCCCCCCCCCHHHHHHHHHHcCCCEEEEECCCcccchhHHHHHHHHhhcCceEEEEE
Confidence            5789999999431            22346899999999999998776543  334566677788888875544333

>d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: 4-oxalomesaconate hydratase LigJ
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=97.93  E-value=3.4e-06  Score=50.20  Aligned_cols=47  Identities=11%  Similarity=-0.017  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhcCCcEEEeeccCh-----------------hhHHHHHHHHHhCCC-eEeeeeecC
Q 035377           19 APQLIATTVNSGVLHFAVNGVSE-----------------EDWNLVKDMSERHPS-VIPCFGVHP   65 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~-----------------~~~~~~~~l~~~~~~-i~~~~GiHP   65 (66)
                      .++.++.+.++||++.++..+..                 ..++.+.++++++|. +.+.+.+.|
T Consensus        51 ~~~~l~~md~~GId~~vl~~~~~~~~~~~~~~~~~~~~~~~~Nd~~~~~~~~~p~r~~~~~~v~~  115 (342)
T d2gwga1          51 IENQLKKMQERGSDLTVFSPRASFMAHHIGDFNVSSTWAAICNELCYRVSQLFPDNFIGAAMLPQ  115 (342)
T ss_dssp             HTTHHHHHHHHTCCEEEEECCC-------CCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECCC
T ss_pred             HHHHHHHHHHcCCcEEEEeccCcccccccCCHHHHHHHHHHHHHHHHHHHhhCCCeeeeEeeccc
Confidence            34567888999999866543321                 124567788899997 555555654

>d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Putative amidohydrolase LP2961
species: Lactobacillus plantarum [TaxId: 1590]

Probab=97.69  E-value=2.1e-05  Score=46.84  Aligned_cols=62  Identities=11%  Similarity=0.131  Sum_probs=40.5

Q ss_pred             EeeccCCCCCcC------------------CCCHHHHHHHHHhcCCcEEEee----cc---Chhh--------HHHHHHH
Q 035377            4 FDAHCHLQDPRI------------------FHKAPQLIATTVNSGVLHFAVN----GV---SEED--------WNLVKDM   50 (66)
Q Consensus         4 iDsH~Hl~~~~~------------------~~~~~~~~~~~~~~gv~~~~~~----~~---~~~~--------~~~~~~l   50 (66)
                      ||+|+|+..+.+                  ..+.+..++.+.+.||.+.++.    +.   +.+.        ++.+.++
T Consensus         3 ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Md~~GI~~avl~~~~p~~~~~~~~~~~~~~~~~Nd~~~~~   82 (306)
T d2f6ka1           3 IDFHTHYLPTSYVEALKRHVPGDPDGWPTPEWTPQLTLNFMRDNDISYSILSLSSPHVNFGDKAETIRLVEAANDDGKSL   82 (306)
T ss_dssp             EEEEEECCCHHHHHHHHHHCCSSGGGSCCCCCCHHHHHHHHHHTTEEEEEEECCSSCSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHhcCCCCCCCcCCCCCHHHHHHHHHHcCCCEEEEcCCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence            899999853211                  1268899999999999875541    11   2221        4567788


Q ss_pred             HHhCCCeEeeeeecC
Q 035377           51 SERHPSVIPCFGVHP   65 (66)
Q Consensus        51 ~~~~~~i~~~~GiHP   65 (66)
                      ++++|+-+..+|.-|
T Consensus        83 ~~~~P~Rf~~~a~vp   97 (306)
T d2f6ka1          83 AQQYPDQLGYLASLP   97 (306)
T ss_dssp             HHHCTTTEEEEECCC
T ss_pred             HHHCCCeEEEEeecc
Confidence            899997444555443

>d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=97.58  E-value=5.9e-05  Score=44.78  Aligned_cols=47  Identities=13%  Similarity=0.048  Sum_probs=31.8

Q ss_pred             CHHHHHHHHHhcCCcEEEeeccC--------hh--------hHHHHHHHHHhCCCeE-eeeeec
Q 035377           18 KAPQLIATTVNSGVLHFAVNGVS--------EE--------DWNLVKDMSERHPSVI-PCFGVH   64 (66)
Q Consensus        18 ~~~~~~~~~~~~gv~~~~~~~~~--------~~--------~~~~~~~l~~~~~~i~-~~~GiH   64 (66)
                      +.++.++.+.++||++.++..+.        .+        .++.+.+++++||+-+ +.+.+.
T Consensus        57 ~~~~~l~~Md~~gid~av~~~~~~~~~~~~~~~~~~~~~~~~Nd~~~~~~~~~p~R~~~~~~v~  120 (331)
T d2hbva1          57 DPAFRIEEMDAQGVDVQVTCATPVMFGYTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVP  120 (331)
T ss_dssp             CHHHHHHHHHHHTCSEEEEEECGGGCCTTSCHHHHHHHHHHHHHHHHHHHTTCTTTEEECBCCC
T ss_pred             CHHHHHHHHHHcCCCEEEEeccccccccccchhhhhhHHHHhhHHHHHHHhhccCcceeeeEee
Confidence            57888999999999986654322        11        1556778889999844 444443

>d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenine deaminase-like
domain: Putative adenine deaminase EF0837
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.34  E-value=0.00018  Score=39.11  Aligned_cols=52  Identities=17%  Similarity=0.259  Sum_probs=35.2

Q ss_pred             ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCC
Q 035377            2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPS   56 (66)
Q Consensus         2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~   56 (66)
                      .|||+|+|+...  ...++.+   +.+...||..++..++ .+...+..++..++.+.
T Consensus         1 GlID~H~H~~~~~~~~~~~~~---~~~l~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~   55 (267)
T d2icsa2           1 GWIDDHVHCFEKMALYYDYPD---EIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKT   55 (267)
T ss_dssp             CEEEEEECCCTTSSSSCCCHH---HHTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSS
T ss_pred             CeEEeCcCCCCCCCcchhhHH---HHHhCCeeEEEECCCCCChhHHHHHHHHHHhhhc
Confidence            389999999532  2333433   4567789998887665 45677777777777654

>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein YcdX
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00055  Score=38.09  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=26.5

Q ss_pred             eEeeccCCCCC-cCCCCHHHHHHHHHhcCCcEEEe
Q 035377            3 LFDAHCHLQDP-RIFHKAPQLIATTVNSGVLHFAV   36 (66)
Q Consensus         3 ~iDsH~Hl~~~-~~~~~~~~~~~~~~~~gv~~~~~   36 (66)
                      .||.|||.... .-...+++++++|++.|++.+.+
T Consensus         2 ~iDlH~Ht~~S~dg~~~~~e~v~~A~~~Gl~~iai   36 (244)
T d1m65a_           2 PVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAI   36 (244)
T ss_dssp             CEECCBCCTTSTTCCCCHHHHHHHHHHHTCCEEEE
T ss_pred             CeeeecCCCCCCCCcCCHHHHHHHHHHCCCCEEEE
Confidence            38999998653 22346899999999999998654

>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Thermus sp. [TaxId: 275]

Probab=96.70  E-value=0.0029  Score=37.98  Aligned_cols=53  Identities=17%  Similarity=0.192  Sum_probs=36.3

Q ss_pred             eEeeccCCCCCc----CCCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHhCC
Q 035377            3 LFDAHCHLQDPR----IFHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSERHP   55 (66)
Q Consensus         3 ~iDsH~Hl~~~~----~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~~~   55 (66)
                      |||.|+|+..+.    ..++++.--+.|..-||..++.+..      +.+.++...+.+++..
T Consensus         1 lID~HvH~~~p~~~~~~ked~~sgs~AAa~GGvTtv~dmpn~~p~~~~~~~~~~~~~~a~~~~   63 (335)
T d1gkpa2           1 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNS   63 (335)
T ss_dssp             EEEEEECSSCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTC
T ss_pred             CcCcccccCCCCCCCccccHHHHHHHHHHhCCCeEEEECCCCCCCCChHHHHHHHHHHHhcCC
Confidence            799999996532    3578888888888899988775531      2345555556666544

>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Bacillus sp. AR9 [TaxId: 301298]

Probab=96.67  E-value=0.0032  Score=37.74  Aligned_cols=53  Identities=11%  Similarity=-0.004  Sum_probs=36.5

Q ss_pred             eEeeccCCCCC----cCCCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHhCC
Q 035377            3 LFDAHCHLQDP----RIFHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSERHP   55 (66)
Q Consensus         3 ~iDsH~Hl~~~----~~~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~~~   55 (66)
                      +||.|||+..+    ...+|++.--+.|..-||..++.+.      .+.+.++...++++...
T Consensus         2 ~ID~HvH~r~p~~g~~~~ed~~tgs~AAa~GGvTtv~~mpnt~p~~~~~~~~~~~~~~a~~~~   64 (332)
T d1ynya2           2 GIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKARGKA   64 (332)
T ss_dssp             EEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCSSCCHHHHHHHHHHHHTTTC
T ss_pred             ceeCccCCCCCCCCCcccccHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHHhccC
Confidence            79999999753    2356888877888888998877643      23445556666666543

>d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Uncharacterized protein EAJ56179
species: Unidentified organism [TaxId: 32644]

Probab=96.52  E-value=0.0016  Score=36.13  Aligned_cols=46  Identities=13%  Similarity=0.157  Sum_probs=27.6

Q ss_pred             ceEeeccCCCCCcCCC------CHH-------HHHHHHHhcCCcEEEeeccChhhHHHH
Q 035377            2 KLFDAHCHLQDPRIFH------KAP-------QLIATTVNSGVLHFAVNGVSEEDWNLV   47 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~~------~~~-------~~~~~~~~~gv~~~~~~~~~~~~~~~~   47 (66)
                      .|||+|+|+.......      +..       ..++++..+||..+..+|......+..
T Consensus         1 GLID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GVTTv~d~g~~~~~~~~~   59 (311)
T d2r8ca2           1 GLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQA   59 (311)
T ss_dssp             CEEEEEECTTCCSSCHHHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEECSSCCHHHHHH
T ss_pred             CeEEcccCcCCCCCChhhhhcCCHHHHHHHHHHHHHHHHhCCccEEEeCCCchHHHHHH
Confidence            3899999996533210      111       123455678999888887654444443

>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidinase related protein-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.0038  Score=37.53  Aligned_cols=53  Identities=11%  Similarity=0.028  Sum_probs=37.8

Q ss_pred             ceEeeccCCCCC----cCCCCHHHHHHHHHhcCCcEEEeec-c-----ChhhHHHHHHHHHhC
Q 035377            2 KLFDAHCHLQDP----RIFHKAPQLIATTVNSGVLHFAVNG-V-----SEEDWNLVKDMSERH   54 (66)
Q Consensus         2 ~~iDsH~Hl~~~----~~~~~~~~~~~~~~~~gv~~~~~~~-~-----~~~~~~~~~~l~~~~   54 (66)
                      .+||.|+|+..+    ..++|++.--+.|..-||..++..- +     +++.++...+.+++.
T Consensus         2 G~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~   64 (334)
T d1kcxa2           2 GGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTK   64 (334)
T ss_dssp             CEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CeEeeeecCCCCCCCCcccchHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhccc
Confidence            479999999754    3467898888889999998877542 1     245566666666653

>d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0021  Score=35.46  Aligned_cols=35  Identities=9%  Similarity=0.089  Sum_probs=21.8

Q ss_pred             ceEeeccCCCC-------CcC--CCCHHHHHHHHHhcCCcEEEe
Q 035377            2 KLFDAHCHLQD-------PRI--FHKAPQLIATTVNSGVLHFAV   36 (66)
Q Consensus         2 ~~iDsH~Hl~~-------~~~--~~~~~~~~~~~~~~gv~~~~~   36 (66)
                      .|||+|+|+..       ...  .+......+++...||..++.
T Consensus         1 GlID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~   44 (297)
T d1yrra2           1 GFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLP   44 (297)
T ss_dssp             CEEEEEESEETTEESSSSTTTSSHHHHHHHHHHHHHTTEEEEEE
T ss_pred             CEEeHhhCCcCCCCCCCCcccCCHHHHHHHHHHHHccCeEEEeC
Confidence            38999999621       111  123455667777889987653

>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Two-domain dihydroorotase
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.41  E-value=0.0073  Score=35.55  Aligned_cols=53  Identities=19%  Similarity=0.176  Sum_probs=36.5

Q ss_pred             eEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHhCC
Q 035377            3 LFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSERHP   55 (66)
Q Consensus         3 ~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~~~   55 (66)
                      +||.|+|+..+  ...+|++.--+.|..-|+..++.+-      .+.+..+..++.++...
T Consensus         2 ~ID~HvHlr~PG~~~~ed~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~~~~~~   62 (310)
T d1xrta2           2 FIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVG   62 (310)
T ss_dssp             EEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHC
T ss_pred             cEeCcccCCCCCccccccHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHhhccC
Confidence            79999999753  3457888888888888998877552      23455555566555533

>d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.38  E-value=0.0032  Score=35.22  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=26.0

Q ss_pred             ceEeeccCCCC--CcCCCCHHHHHHHHHhcCCcEEE
Q 035377            2 KLFDAHCHLQD--PRIFHKAPQLIATTVNSGVLHFA   35 (66)
Q Consensus         2 ~~iDsH~Hl~~--~~~~~~~~~~~~~~~~~gv~~~~   35 (66)
                      .|||.|+|+..  +....++.+..+.+...||..++
T Consensus         1 GlID~HvH~~~~~~~~~~~~~~~~~~~l~~GvTTv~   36 (288)
T d1o12a2           1 GFVDPHIHGVVGADTMNCDFSEMEEFLYSQGVTTFL   36 (288)
T ss_dssp             CEEEEEECEETTEETTTTCHHHHHHHHHTTTEEEEE
T ss_pred             CeEEecccCCCCCccccccHHHHHHHHHhCCeEEEc
Confidence            38999999754  22346788888888999998765

>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Burkholderia pickettii [TaxId: 329]

Probab=96.37  E-value=0.0088  Score=35.81  Aligned_cols=54  Identities=11%  Similarity=0.035  Sum_probs=37.5

Q ss_pred             eEeeccCCCCC----cCCCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHhCCC
Q 035377            3 LFDAHCHLQDP----RIFHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSERHPS   56 (66)
Q Consensus         3 ~iDsH~Hl~~~----~~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~~~~   56 (66)
                      +||.|+|+..+    ...+|+..--+.|..-||..++.+-.      +++.+++..+++++...
T Consensus         2 ~ID~HvH~r~p~~g~~~~Ed~~tgs~AAa~GGvTtv~~mpn~~p~~~~~e~~~~~~~~a~~~s~   65 (330)
T d1nfga2           2 GIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSA   65 (330)
T ss_dssp             EEEEEECCSCEETTEECSCCHHHHHHHHHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCS
T ss_pred             cEeCccCCCCCCCCccccchHHHHHHHHHcCCCEEEEECCCCCCCCCCHHHHHHHHHHHhcCCe
Confidence            79999999654    23468888888889999988775421      24456666666665443

>d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.34  E-value=0.011  Score=35.40  Aligned_cols=54  Identities=17%  Similarity=0.082  Sum_probs=36.8

Q ss_pred             ceEeeccCCCCC----cCCCCHHHHHHHHHhcCCcEEEeec-c-----ChhhHHHHHHHHHhCC
Q 035377            2 KLFDAHCHLQDP----RIFHKAPQLIATTVNSGVLHFAVNG-V-----SEEDWNLVKDMSERHP   55 (66)
Q Consensus         2 ~~iDsH~Hl~~~----~~~~~~~~~~~~~~~~gv~~~~~~~-~-----~~~~~~~~~~l~~~~~   55 (66)
                      .+||.|+|+..+    ...++++.--+.|..-||..++.+- +     +.+.++...+.+++..
T Consensus         2 G~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mpn~~p~~~~~~~~~~~~~~a~~~~   65 (334)
T d2ftwa2           2 GGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKV   65 (334)
T ss_dssp             CEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTC
T ss_pred             CeEcceecCCCCCCCCcccccHHHHHHHHHhCCCeEEEECCCCCCCCCcHHHHHHHHHHHhcCC
Confidence            479999999653    3357888888888888998877532 2     2444555666666543

>d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Zn-dependent arginine carboxypeptidase
species: Unidentified organism [TaxId: 32644]

Probab=96.27  E-value=0.0076  Score=33.06  Aligned_cols=48  Identities=19%  Similarity=0.163  Sum_probs=27.3

Q ss_pred             ceEeeccCCCCCcCC------CCHH-------HHHHHHHhcCCcEEEeeccChhhHHHHHH
Q 035377            2 KLFDAHCHLQDPRIF------HKAP-------QLIATTVNSGVLHFAVNGVSEEDWNLVKD   49 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~------~~~~-------~~~~~~~~~gv~~~~~~~~~~~~~~~~~~   49 (66)
                      .|||+|+|+......      ...+       .-.+++...||..+...+..........+
T Consensus         1 GlID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GVTtv~d~~~~~~~~~~~~~   61 (303)
T d3be7a2           1 GLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANYADVSVRD   61 (303)
T ss_dssp             CEEEEEECCSSCCCCSGGGTTCCTHHHHHHHHHHHHHHHTTTEEEEEECCCSTTHHHHHHH
T ss_pred             CeEEeccCcccCCCcchhhhhcChhhHHHHHHHHHHHHHhcCeeEEEECCCchhhHHHHHH
Confidence            389999998532111      1111       11245567899988887765544433333

>d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Xaa-Pro dipeptidase
species: Alteromonas macleodii [TaxId: 28108]

Probab=96.11  E-value=0.017  Score=31.70  Aligned_cols=51  Identities=22%  Similarity=0.109  Sum_probs=28.9

Q ss_pred             ceEeeccCCCCCcCC-------CCHH-------HHHHHHHhcCCcEEEeeccChhhHHHHHHHHH
Q 035377            2 KLFDAHCHLQDPRIF-------HKAP-------QLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE   52 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~~-------~~~~-------~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~   52 (66)
                      .|||+|+|+......       ...+       .-..++...||..+..++..............
T Consensus         1 GlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GVTTv~d~~~~~~~~~~~~~~~~   65 (310)
T d2qs8a2           1 GLMDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYVTFKSGFTTVRQVGDSGLVAISLRDAIN   65 (310)
T ss_dssp             CEEEEEECTTCCCCCTTTSCSCCCHHHHHHHHHHHHHHHHHTTEEEEEECCCSSSHHHHHHHHHH
T ss_pred             CeEEeeeCCcccCCcccccccccCHHHHHHHHHHHHHHHHhCCceEEEECCCcchhHHHHHHhhh
Confidence            389999998542111       0111       12345667899988877765544444444333

>d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Cytosine deaminase catalytic domain
domain: Cytosine deaminase catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0061  Score=34.34  Aligned_cols=10  Identities=30%  Similarity=0.677  Sum_probs=8.8

Q ss_pred             ceEeeccCCC
Q 035377            2 KLFDAHCHLQ   11 (66)
Q Consensus         2 ~~iDsH~Hl~   11 (66)
                      +|||+|+||+
T Consensus         1 ~FID~H~Hl~   10 (320)
T d1ra0a2           1 PFVEPHIHLD   10 (320)
T ss_dssp             CEEEEEECTT
T ss_pred             CCeecCcCcc
Confidence            5899999985

>d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Isoaspartyl dipeptidase, catalytic domain
domain: Isoaspartyl dipeptidase, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0019  Score=35.96  Aligned_cols=37  Identities=16%  Similarity=0.106  Sum_probs=23.5

Q ss_pred             ceEeeccCCCCCcC-----CCCHHHHHHHHHhcCCcEEEeec
Q 035377            2 KLFDAHCHLQDPRI-----FHKAPQLIATTVNSGVLHFAVNG   38 (66)
Q Consensus         2 ~~iDsH~Hl~~~~~-----~~~~~~~~~~~~~~gv~~~~~~~   38 (66)
                      .|||+|+|+.....     ....+...+++...||..++..+
T Consensus         1 GlID~HvHl~~~~~~~~~~~~~~~~~~~~~l~~GvTTv~d~~   42 (284)
T d1onwa2           1 GFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLL   42 (284)
T ss_dssp             CEEEEEECTTCCBCTTSGGGBCCCCCHHHHHHTTEEEEEECC
T ss_pred             CEEEeccCCCCCCCCcccchhhHHHHHHHHHhCCeEEEecCC
Confidence            38999999964221     12223335677788998877643

>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein TM0559
species: Thermotoga maritima [TaxId: 2336]

Probab=95.82  E-value=0.01  Score=32.85  Aligned_cols=33  Identities=18%  Similarity=0.098  Sum_probs=26.5

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEE
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFA   35 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~   35 (66)
                      ..|.|+|-....-...+++++++|++.|++.+.
T Consensus         5 ~aDlH~HT~~SDg~~t~~e~~~~A~~~Gld~ia   37 (229)
T d2anua1           5 LCDFHVHTNMSDGHLPLGEVVDLFGKHGVDVVS   37 (229)
T ss_dssp             EEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEE
T ss_pred             eeecccCcCccCCCCCHHHHHHHHHHcCCCEEE
Confidence            479999976543346799999999999998764

>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=95.79  E-value=0.023  Score=34.83  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=26.6

Q ss_pred             eEeeccCCCCC-----cCCCCHHHHHHHHHhcCCcEEEee
Q 035377            3 LFDAHCHLQDP-----RIFHKAPQLIATTVNSGVLHFAVN   37 (66)
Q Consensus         3 ~iDsH~Hl~~~-----~~~~~~~~~~~~~~~~gv~~~~~~   37 (66)
                      +||.|||+..+     ...++++.--+.|..-||..++..
T Consensus         2 ~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~m   41 (384)
T d2fvka2           2 GIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAF   41 (384)
T ss_dssp             EEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ceeCCcCCCCCCCCCCcccchHHHHHHHHHcCCceEEEEC
Confidence            79999999764     334677777777888899887754

>d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Thermophilic reversible gamma-resorcylate decarboxylase
species: Rhizobium sp. MTP-10005 [TaxId: 267998]

Probab=95.77  E-value=0.0018  Score=38.40  Aligned_cols=63  Identities=6%  Similarity=0.101  Sum_probs=39.6

Q ss_pred             eEeeccCCCCCcCC--------C-----------C-HHHHHHHHHhcCCcEEEeecc--------Chhh--------HHH
Q 035377            3 LFDAHCHLQDPRIF--------H-----------K-APQLIATTVNSGVLHFAVNGV--------SEED--------WNL   46 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~--------~-----------~-~~~~~~~~~~~gv~~~~~~~~--------~~~~--------~~~   46 (66)
                      -||.|.|+..++..        +           | .+..++.+.++||++.++.-+        +.+.        ++.
T Consensus         4 ~i~~~~h~~~p~~~~~~~~~~~~~~~~~~~~~~~d~~~~rl~~MD~~GId~avl~~~~~~~~~~~~~~~~~~~ar~~Nd~   83 (325)
T d2dvta1           4 KVALEEHFAIPETLQDSAGFVPGDYWKELQHRLLDIQDTRLKLMDAHGIETMILSLNAPAVQAIPDRRKAIEIARRANDV   83 (325)
T ss_dssp             EEEEEEEECCHHHHGGGTTTSCSSHHHHHHHHHHCSSSHHHHHHHHTTEEEEEEEECSSGGGGCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEeccCCcchhhhhccCCCccchHHHHhhcCCchHHHHHHHHHCCCcEEEEecCchHhcccCChHHHHHHHHHHHHH
Confidence            59999999653221        1           1 145678899999998654111        2221        356


Q ss_pred             HHHHHHhCCC-eEeeeeecC
Q 035377           47 VKDMSERHPS-VIPCFGVHP   65 (66)
Q Consensus        47 ~~~l~~~~~~-i~~~~GiHP   65 (66)
                      +.+.+++||. ..+.+.+.|
T Consensus        84 l~~~~~~~P~Rf~~~~~v~~  103 (325)
T d2dvta1          84 LAEECAKRPDRFLAFAALPL  103 (325)
T ss_dssp             HHHHHHHCTTTEEEEECCCT
T ss_pred             HHHHhccCCCeEEEEEEccc
Confidence            7788889997 555666654

>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: L-hydantoinase
species: Arthrobacter aurescens [TaxId: 43663]

Probab=95.47  E-value=0.026  Score=33.40  Aligned_cols=51  Identities=12%  Similarity=0.107  Sum_probs=33.4

Q ss_pred             eEeeccCCCCCcC--CC-CHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHh
Q 035377            3 LFDAHCHLQDPRI--FH-KAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSER   53 (66)
Q Consensus         3 ~iDsH~Hl~~~~~--~~-~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~   53 (66)
                      +||.|||+-.+.+  .+ +++.--+.|..-||..++.+-      .+.+.+.+..+.+++
T Consensus         2 ~ID~HvH~repg~~~ke~~~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~   61 (325)
T d1gkra2           2 VVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQ   61 (325)
T ss_dssp             EEEEEEECCCGGGTTTSCCHHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHH
T ss_pred             cEeCCcCCCCCCCCCcccHHHHHHHHHHccCCceEEECCCCCCCcCCHHHHHHHHHHhcc
Confidence            7999999965332  22 477777788888998877542      234556555555544

>d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Uncharacterized protein BL1453
species: Bifidobacterium longum [TaxId: 216816]

Probab=94.58  E-value=0.04  Score=29.96  Aligned_cols=20  Identities=25%  Similarity=0.184  Sum_probs=12.5

Q ss_pred             HHHHHhcCCcEEEeeccChh
Q 035377           23 IATTVNSGVLHFAVNGVSEE   42 (66)
Q Consensus        23 ~~~~~~~gv~~~~~~~~~~~   42 (66)
                      +.++...||..+...+....
T Consensus        51 ~~~~l~~GvTt~~~~~~~~~   70 (324)
T d2p9ba2          51 ATTLLESGVTTIRTLGDVGY   70 (324)
T ss_dssp             HHHHHHTTEEEEEESCCSSS
T ss_pred             HHHHHhCCceEEeccCCCcc
Confidence            34556689888776654433

>d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Uronate isomerase-like
domain: Uronate isomerase TM0064
species: Thermotoga maritima [TaxId: 2336]

Probab=93.25  E-value=0.041  Score=34.46  Aligned_cols=54  Identities=17%  Similarity=0.203  Sum_probs=29.8

Q ss_pred             CceEeeccCCCCCcC-----CCCHHHH--------HHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377            1 MKLFDAHCHLQDPRI-----FHKAPQL--------IATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~-----~~~~~~~--------~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      |++||-|||+....+     .+++.++        .+.++.+||.--.+ +.+..+.++-..+++.+|
T Consensus        25 ~PIiD~H~Hl~p~~~~e~~~F~~i~~l~~~~DHY~~r~mr~~Gi~e~~i-tg~a~~~ekf~~~a~~~~   91 (451)
T d1j5sa_          25 LPIVDPHNHLDAKDIVENKPWNDIWEVEGATDHYVWELMRRCGVSEEYI-TGSRSNKEKWLALAKVFP   91 (451)
T ss_dssp             SCEEESCCCCCHHHHHHTCCCSCHHHHHTTTCHHHHHHHHHTTCCGGGT-TSSSCHHHHHHHHHHHGG
T ss_pred             CCEeCCCCCCCHHHHhhcCCCCCHHHHhccccHHHHHHHHHCCCCHHHc-cCCCCHHHHHHHHHHHhH
Confidence            579999999974322     2445543        34567888853211 223334444455555544

>d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: DR0824-like
domain: Hypothetical protein DR0824
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.16  E-value=0.023  Score=32.09  Aligned_cols=11  Identities=36%  Similarity=0.462  Sum_probs=9.2

Q ss_pred             ceEeeccCCCC
Q 035377            2 KLFDAHCHLQD   12 (66)
Q Consensus         2 ~~iDsH~Hl~~   12 (66)
                      .|||+|+|++.
T Consensus         2 GlIdaH~Hl~~   12 (308)
T d2imra2           2 PPVNAHTHLDM   12 (308)
T ss_dssp             CCCEEEEESSC
T ss_pred             CccchhhChhh
Confidence            48999999963

>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Putative phosphodiesterase MJ0936
species: Methanococcus jannaschii [TaxId: 2190]

Probab=93.11  E-value=0.02  Score=30.73  Aligned_cols=55  Identities=18%  Similarity=0.264  Sum_probs=34.3

Q ss_pred             eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377            3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVH   64 (66)
Q Consensus         3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiH   64 (66)
                      +-|+|..+      ..++++++.+++.+++.++..| +.-.......+.+....++...|=|
T Consensus         6 iSDiHgn~------~al~~vl~~~~~~~~D~ii~~G-D~~~~~~~~~l~~~~~~~~~v~GN~   60 (165)
T d1s3la_           6 MSDTHDHL------PNIRKAIEIFNDENVETVIHCG-DFVSLFVIKEFENLNANIIATYGNN   60 (165)
T ss_dssp             ECCCTTCH------HHHHHHHHHHHHSCCSEEEECS-CCCSTHHHHHGGGCSSEEEEECCTT
T ss_pred             EEeCCCCH------HHHHHHHHHHHhcCCCEEEECC-CccCHHHHHHHhhcCccEEEEcccc
Confidence            46888543      2367888988999999998877 4433333334444434455555544

>d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=91.86  E-value=0.1  Score=29.19  Aligned_cols=10  Identities=40%  Similarity=0.727  Sum_probs=8.6

Q ss_pred             ceEeeccCCC
Q 035377            2 KLFDAHCHLQ   11 (66)
Q Consensus         2 ~~iDsH~Hl~   11 (66)
                      .|||+|+|+.
T Consensus         2 GlID~H~Hl~   11 (325)
T d2ooda2           2 GFIDGHIHLP   11 (325)
T ss_dssp             CEEEEEEEGG
T ss_pred             CCcchhhCcc
Confidence            4899999984

>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: alpha-subunit of urease, catalytic domain
domain: alpha-subunit of urease, catalytic domain
species: Helicobacter pylori [TaxId: 210]

Probab=91.70  E-value=0.28  Score=30.24  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=33.9

Q ss_pred             EeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccCh-------------hhHHHHHHHHHhCCC
Q 035377            4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSE-------------EDWNLVKDMSERHPS   56 (66)
Q Consensus         4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~-------------~~~~~~~~l~~~~~~   56 (66)
                      ||+|+|+-.+       +.++.|...||..++--|+.+             ....+.++.++.+|-
T Consensus         2 iDtHvHfi~P-------qq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~i~~ml~a~d~~P~   60 (389)
T d1e9yb2           2 IDTHIHFISP-------QQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSM   60 (389)
T ss_dssp             EEEEEETTCT-------THHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSS
T ss_pred             ccccccccCH-------HHHHHHHhcCCeEEecCccCCCCCCCccccCCChhHHHHHHHhhhcCCc
Confidence            8999998653       357788899999887655543             335577788888884

>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: alpha-subunit of urease, catalytic domain
domain: alpha-subunit of urease, catalytic domain
species: Klebsiella aerogenes [TaxId: 28451]

Probab=91.19  E-value=0.26  Score=30.38  Aligned_cols=46  Identities=22%  Similarity=0.273  Sum_probs=33.5

Q ss_pred             EeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChh-------------hHHHHHHHHHhCCC
Q 035377            4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEE-------------DWNLVKDMSERHPS   56 (66)
Q Consensus         4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~-------------~~~~~~~l~~~~~~   56 (66)
                      ||+|+|+-.+       +.+++|...||..++--|+.+.             ...+.++-++.+|-
T Consensus         2 iDtHvHfi~P-------qq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~~~~ml~a~d~~P~   60 (385)
T d1ejxc2           2 IDTHIHWICP-------QQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPV   60 (385)
T ss_dssp             EEEEEECSCT-------THHHHHHHTTEEEEEEECCSSSHHHHHSSCCCHHHHHHHHHHHHTTSSS
T ss_pred             ccccccccCH-------HHHHHHHhcCCeeeecCccCCCCCCCCcCcCCCHHHHHHHHHhhhhCCc
Confidence            8999998653       3577888999998886555432             35567777888884

>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Uronate isomerase-like
domain: Uncharacterized protein BH0493
species: Bacillus halodurans [TaxId: 86665]

Probab=91.09  E-value=0.039  Score=34.16  Aligned_cols=15  Identities=33%  Similarity=0.541  Sum_probs=12.1

Q ss_pred             CceEeeccCCCCCcC
Q 035377            1 MKLFDAHCHLQDPRI   15 (66)
Q Consensus         1 m~~iDsH~Hl~~~~~   15 (66)
                      |++||-||||...++
T Consensus        19 ~PIID~H~HL~p~~~   33 (415)
T d2qeec1          19 QPVTDMHTHLFSPNF   33 (415)
T ss_dssp             SCEEECSCSCCCGGG
T ss_pred             CCEeCCCCCcCHHHh
Confidence            679999999986544

>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: alpha-subunit of urease, catalytic domain
domain: alpha-subunit of urease, catalytic domain
species: Bacillus pasteurii [TaxId: 1474]

Probab=90.68  E-value=0.32  Score=30.00  Aligned_cols=46  Identities=17%  Similarity=0.336  Sum_probs=33.4

Q ss_pred             EeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccCh-------------hhHHHHHHHHHhCCC
Q 035377            4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSE-------------EDWNLVKDMSERHPS   56 (66)
Q Consensus         4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~-------------~~~~~~~~l~~~~~~   56 (66)
                      ||+|+|+-.+       +.++.|...||..++--|+.+             ....+.++-++.+|-
T Consensus         3 iDtHvHfi~P-------qq~~~al~sGiTT~~GgGtGpa~gt~att~tpG~~~i~~ml~a~d~~P~   61 (390)
T d4ubpc2           3 IDTHVHFINP-------DQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPI   61 (390)
T ss_dssp             EEEEEECCCT-------THHHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSS
T ss_pred             ccccccccCH-------HHHHHHHhcCCeeeecCccCCCCCCCCcccCCCHHHHHHHHHhhhhCCc
Confidence            8999998653       357788889999887655543             235567777777884

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=90.41  E-value=0.64  Score=26.34  Aligned_cols=46  Identities=15%  Similarity=0.212  Sum_probs=34.7

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG   62 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G   62 (66)
                      ++..++.+.+.+.|+..+=+.-.++..++.+..+.++||++...+|
T Consensus        29 ~~a~~~~~al~~~Gi~~iEitl~~p~a~~~i~~l~~~~p~~~vGaG   74 (216)
T d1mxsa_          29 EDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAG   74 (216)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCcceeee
Confidence            4677888888999998654444566667777778889999877666

>d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Hypothetical protein GOS 1943094
species: Environmental samples

Probab=90.27  E-value=0.45  Score=26.94  Aligned_cols=31  Identities=13%  Similarity=0.093  Sum_probs=17.2

Q ss_pred             HHHhcCCcEEEeecc------ChhhHHHHHHHHHhCC
Q 035377           25 TTVNSGVLHFAVNGV------SEEDWNLVKDMSERHP   55 (66)
Q Consensus        25 ~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~~~   55 (66)
                      ++.+.|+..+...+.      ..+....+.+.+.+.+
T Consensus        56 e~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~g   92 (336)
T d2paja2          56 ELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLG   92 (336)
T ss_dssp             HHHTTTEEEEEECCCCCCTTCSSCHHHHHHHHHHHTT
T ss_pred             HHHhCCCeEEEecccccccccchhHHHHHHHHHHHhC
Confidence            445678877766543      2334445555555543

>d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421
species: Environmental samples

Probab=90.03  E-value=0.043  Score=29.80  Aligned_cols=10  Identities=50%  Similarity=0.757  Sum_probs=8.6

Q ss_pred             ceEeeccCCC
Q 035377            2 KLFDAHCHLQ   11 (66)
Q Consensus         2 ~~iDsH~Hl~   11 (66)
                      .|||+|+|+.
T Consensus         2 GlID~H~Hl~   11 (301)
T d2q09a2           2 GLIDCHTHLI   11 (301)
T ss_dssp             CEEEEEECCC
T ss_pred             CeeccccCcC
Confidence            4899999984

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.73  E-value=0.6  Score=26.95  Aligned_cols=36  Identities=14%  Similarity=0.117  Sum_probs=25.2

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH   54 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~   54 (66)
                      .++.+++++++|+.+++++-..+++.+...+.++++
T Consensus        97 ~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~  132 (248)
T d1geqa_          97 VRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREE  132 (248)
T ss_dssp             HHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHH
T ss_pred             HHHHhhhhcccCeeEEeccCCcHHHHHHHHhhcccc
Confidence            567777777777777777766667666666666654

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=89.30  E-value=0.86  Score=25.68  Aligned_cols=46  Identities=15%  Similarity=0.171  Sum_probs=33.7

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG   62 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G   62 (66)
                      ++...+.+.+.+.|++.+=++-.++..++.+.++.+++|++...+|
T Consensus        26 ~~~~~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~p~~~vGaG   71 (212)
T d1vhca_          26 DDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAG   71 (212)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCceEeee
Confidence            4677788888899998664444456666666668889999777766

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=89.07  E-value=0.9  Score=25.64  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=33.6

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG   62 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G   62 (66)
                      ++...+.+.+.+.|+..+=++-.++...+.+.++.++||++...+|
T Consensus        27 ~~a~~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~p~~~vGaG   72 (213)
T d1wbha1          27 EHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAG   72 (213)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCeeecc
Confidence            4577888899999998654444455566667778888999776666

>d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Imidazolonepropionase
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.05  E-value=0.063  Score=29.51  Aligned_cols=10  Identities=50%  Similarity=0.793  Sum_probs=8.6

Q ss_pred             ceEeeccCCC
Q 035377            2 KLFDAHCHLQ   11 (66)
Q Consensus         2 ~~iDsH~Hl~   11 (66)
                      .|||+|+|+.
T Consensus         2 GlID~H~Hl~   11 (301)
T d2puza2           2 ALIDCHTHLV   11 (301)
T ss_dssp             CEEECCCCCC
T ss_pred             CeeccccCcC
Confidence            4899999984

>d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Imidazolonepropionase
species: Bacillus subtilis [TaxId: 1423]

Probab=88.41  E-value=0.073  Score=29.35  Aligned_cols=10  Identities=50%  Similarity=0.733  Sum_probs=8.6

Q ss_pred             ceEeeccCCC
Q 035377            2 KLFDAHCHLQ   11 (66)
Q Consensus         2 ~~iDsH~Hl~   11 (66)
                      .|||+|+|+.
T Consensus         2 GlID~H~Hl~   11 (300)
T d2bb0a2           2 GLVDPHTHLV   11 (300)
T ss_dssp             CEEECCBCCC
T ss_pred             CeeccccCcC
Confidence            4899999984

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.06  E-value=0.39  Score=28.02  Aligned_cols=37  Identities=22%  Similarity=0.186  Sum_probs=28.4

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP   55 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~   55 (66)
                      .++.+++++++|+.+++++-..+++.....+.++++.
T Consensus       111 ~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~  147 (267)
T d1qopa_         111 IDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHN  147 (267)
T ss_dssp             HHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTT
T ss_pred             chHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccC
Confidence            5777888888888888888777777777777777663

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=85.12  E-value=0.42  Score=28.06  Aligned_cols=36  Identities=3%  Similarity=0.057  Sum_probs=20.5

Q ss_pred             HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377           19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH   54 (66)
Q Consensus        19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~   54 (66)
                      .++.++++.++|+.+++++-..+++.....+.++++
T Consensus       108 ~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~  143 (271)
T d1ujpa_         108 PERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEI  143 (271)
T ss_dssp             HHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHH
T ss_pred             chhHhHHHhhcCceeEeccchhhhhHHHHHHHhhcc
Confidence            455666666666666666555555555555554443

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.04  E-value=0.53  Score=26.45  Aligned_cols=49  Identities=6%  Similarity=0.026  Sum_probs=31.4

Q ss_pred             CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377           17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW   66 (66)
Q Consensus        17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~   66 (66)
                      .+++..++++.++|...+..-.-..++..+.++..++. ++.+++.++|.
T Consensus        69 ~~P~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~-g~~~Gial~p~  117 (217)
T d2flia1          69 VDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAA-GMKAGVVINPG  117 (217)
T ss_dssp             SSGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHT-TSEEEEEECTT
T ss_pred             cCHHHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhc-CCeEEEEecCC
Confidence            34566778888888876554333344566667777764 56677777773

>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FAD-linked oxidoreductase
family: Methylenetetrahydrofolate reductase
domain: Methylenetetrahydrofolate reductase
species: Escherichia coli [TaxId: 562]

Probab=84.63  E-value=1.6  Score=25.11  Aligned_cols=48  Identities=8%  Similarity=-0.004  Sum_probs=31.8

Q ss_pred             CHHHHHHHHHhcCCcEEEeeccChhh--------HHHHHHHHHhCCCeEeeeeecC
Q 035377           18 KAPQLIATTVNSGVLHFAVNGVSEED--------WNLVKDMSERHPSVIPCFGVHP   65 (66)
Q Consensus        18 ~~~~~~~~~~~~gv~~~~~~~~~~~~--------~~~~~~l~~~~~~i~~~~GiHP   65 (66)
                      .+.+.+..+.+.||+.+++++.++..        ...++++.+........++.||
T Consensus        78 ~l~~~l~~~~~~GI~niL~l~GD~~~~~~~~~~~a~dlv~li~~~~~~~igva~~P  133 (275)
T d1b5ta_          78 ELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP  133 (275)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCCCCCSSSCCCCCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred             HHHHHHHHHHHHhhCeEEEecCCCCCCCCCCcccHHHHHHHHHHHHhcCCceeecC
Confidence            46677889999999999988766421        3345556665544444566666

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=83.38  E-value=2.2  Score=23.61  Aligned_cols=44  Identities=7%  Similarity=0.065  Sum_probs=26.9

Q ss_pred             HHHHHHHHhcCC-----cEEEe---eccChhhHHHHHHHHHhCCCeEeeeee
Q 035377           20 PQLIATTVNSGV-----LHFAV---NGVSEEDWNLVKDMSERHPSVIPCFGV   63 (66)
Q Consensus        20 ~~~~~~~~~~gv-----~~~~~---~~~~~~~~~~~~~l~~~~~~i~~~~Gi   63 (66)
                      .+++.++.++|+     +.+++   ++.+.++.+++++++++..++...+|.
T Consensus        99 ~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~~v~~  150 (237)
T d2nvwa1          99 YEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICL  150 (237)
T ss_dssp             HHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEEC
T ss_pred             hhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcCCeeEEEEE
Confidence            344555555664     23433   356777888888877765566666664