Citrus Sinensis ID: 035417

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-
Protein Sequence
MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVLDESTPVRH
Secondary Structure (PSIPRED)
ccccccEEEEEccccccccHHHHccccccEEEEcEEEEEcHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccccccccEHHEccccHHEEEcccEEEEcccccEEEEEEEEccccccccc
Coil and Loop (DISEMBL)
mlkngsavtlqnmdrktpidvaklnsqhdmlklpatlhvNDGFRQFYRhfsvldestpvrh
Flexible Loop (DISEMBL)
mlkngsavtlqnmdrktpIDVAKLNSQHDMLKLPATLHVNDGFRQFYRhfsvldestpvrh
Low Complexity Region (SEG)
MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVLDESTPVRH
Disordered region (IsUnstruct)
****************************DMLKLPATLHVNDGFRQFYRHFSVL********
Disordered Region (DISOPRED)
****GSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVLD*ST****
Disordered Region (DISEMBL)
********TLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVLDESTPVRH
Disordered Region (DISPRO)
*LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVLDE******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVLDESTPVRH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	61	2.2.26 [Sep-21-2011]
Q9SAR5	342	Ankyrin repeat domain-con	no	no	0.540	0.096	0.727	8e-07

>sp|Q9SAR5|AKR2_ARATH Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/33 (72%), Positives = 31/33 (93%)

Query: 1   MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
           +L+NG+AVTLQN+D KTPIDVAKLNSQ +++KL
Sbjct: 303 LLENGAAVTLQNLDEKTPIDVAKLNSQLEVVKL 335

Seems to be involved in the regulation of hydrogen peroxide levels during biotic and abiotic stresses by optimizing the ascorbate peroxidase 3 (APX3) hydrogen peroxide-degrading activity. This regulation might be monitored by GRF6.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
255546638	345	ankyrin repeat domain protein, putative	0.540	0.095	0.818	3e-07
359474945	358	PREDICTED: ankyrin repeat domain-contain	0.540	0.092	0.787	2e-06
37625031	354	putative ankyrin-repeat protein [Vitis a	0.540	0.093	0.787	2e-06
283993229	350	ankyrin repeat-containing protein [Nicot	0.540	0.094	0.757	2e-06
24637568	350	ankyrin domain protein [Nicotiana tabacu	0.540	0.094	0.757	2e-06
327344119	371	putative PDF1-interacting protein 2, par	0.540	0.088	0.757	3e-06
388496644	176	unknown [Medicago truncatula]	0.540	0.187	0.757	3e-06
449444443	359	PREDICTED: ankyrin repeat domain-contain	0.540	0.091	0.757	4e-06
13310811	350	ankyrin-repeat protein HBP1 [Nicotiana t	0.540	0.094	0.727	6e-06
224132484	308	predicted protein [Populus trichocarpa]	0.540	0.107	0.757	6e-06

>gi|255546638|ref|XP_002514378.1| ankyrin repeat domain protein, putative [Ricinus communis] gi|223546475|gb|EEF47974.1| ankyrin repeat domain protein, putative [Ricinus communis]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query: 1   MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
           +L+NG+AVTLQNMD KTPIDVAKLN+QHD+LKL
Sbjct: 306 LLENGAAVTLQNMDGKTPIDVAKLNNQHDVLKL 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474945|ref|XP_002283498.2| PREDICTED: ankyrin repeat domain-containing protein 2-like [Vitis vinifera] gi|297744439|emb|CBI37701.3| unnamed protein product [Vitis vinifera]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/33 (78%), Positives = 32/33 (96%)

Query: 1   MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
           +L+NG+AVTLQNMD KTPIDVAKLN+QH++LKL
Sbjct: 319 LLENGAAVTLQNMDGKTPIDVAKLNNQHEVLKL 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37625031|gb|AAQ96339.1| putative ankyrin-repeat protein [Vitis aestivalis]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/33 (78%), Positives = 32/33 (96%)

Query: 1   MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
           +L+NG+AVTLQNMD KTPIDVAKLN+QH++LKL
Sbjct: 315 LLENGAAVTLQNMDGKTPIDVAKLNNQHEVLKL 347

Source: Vitis aestivalis

Species: Vitis aestivalis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|283993229|gb|ADB57050.1| ankyrin repeat-containing protein [Nicotiana tabacum]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/33 (75%), Positives = 31/33 (93%)

Query: 1   MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
           +L+NG+AVTLQNMD KTPIDVAKLN+Q ++LKL
Sbjct: 311 LLENGAAVTLQNMDGKTPIDVAKLNNQQEVLKL 343

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24637568|gb|AAN63819.1| ankyrin domain protein [Nicotiana tabacum]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/33 (75%), Positives = 31/33 (93%)

Query: 1   MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
           +L+NG+AVTLQNMD KTPIDVAKLN+Q ++LKL
Sbjct: 311 LLENGAAVTLQNMDGKTPIDVAKLNNQQEVLKL 343

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327344119|gb|AEA50964.1| putative PDF1-interacting protein 2, partial [Gossypium barbadense]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/33 (75%), Positives = 32/33 (96%)

Query: 1   MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
           +L+NG+AVTLQNMD KTPI+VAKLN+QH++LKL
Sbjct: 332 LLENGAAVTLQNMDGKTPIEVAKLNNQHEVLKL 364

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496644|gb|AFK36388.1| unknown [Medicago truncatula]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/33 (75%), Positives = 31/33 (93%)

Query: 1   MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
           +L+NG+AVTLQNMD KTPIDVAKLN+Q D+L+L
Sbjct: 137 LLENGAAVTLQNMDGKTPIDVAKLNNQDDVLQL 169

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444443|ref|XP_004139984.1| PREDICTED: ankyrin repeat domain-containing protein 2-like [Cucumis sativus] gi|449475676|ref|XP_004154520.1| PREDICTED: ankyrin repeat domain-containing protein 2-like [Cucumis sativus]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/33 (75%), Positives = 32/33 (96%)

Query: 1   MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
           +L+NG+AVTLQN+D KTPIDVAKLN+QH++LKL
Sbjct: 320 LLENGAAVTLQNLDGKTPIDVAKLNNQHEVLKL 352

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13310811|gb|AAK18619.1|AF352797_1 ankyrin-repeat protein HBP1 [Nicotiana tabacum] gi|238914605|gb|ACR78152.1| NTHK1-interacting protein 2 [Nicotiana tabacum]

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/33 (72%), Positives = 31/33 (93%)

Query: 1   MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
           +L+NG+AVTLQN+D KTPIDVAKLN+Q ++LKL
Sbjct: 311 LLENGAAVTLQNLDGKTPIDVAKLNNQQEVLKL 343

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132484|ref|XP_002328292.1| predicted protein [Populus trichocarpa] gi|222837807|gb|EEE76172.1| predicted protein [Populus trichocarpa]

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/33 (75%), Positives = 31/33 (93%)

Query: 1   MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
           +L+NG+AVTLQNMD KTPIDVAKLN+Q ++LKL
Sbjct: 269 LLENGAAVTLQNMDGKTPIDVAKLNNQQEVLKL 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
TAIR|locus:2827572	344	AKR2B "ankyrin repeat-containi	0.540	0.095	0.666	2.7e-06

TAIR|locus:2827572 AKR2B "ankyrin repeat-containing 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 22/33 (66%), Positives = 29/33 (87%)

Query:     1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
             +L+NG+AVT QNMD K PIDVA+LN+Q D++KL
Sbjct:   305 LLENGAAVTQQNMDNKNPIDVARLNNQLDVVKL 337


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       61        61   0.00091  102 3  11 22  0.49    27
                                                     29  0.39    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  437 (47 KB)
  Total size of DFA:  76 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.09u 0.12s 8.21t   Elapsed:  00:00:01
  Total cpu time:  8.09u 0.12s 8.21t   Elapsed:  00:00:01
  Start:  Mon May 20 18:05:42 2013   End:  Mon May 20 18:05:43 2013

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	61
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.58
PF13606	30	Ank_3: Ankyrin repeat	99.3
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.29
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.27
PHA02946	446	ankyin-like protein; Provisional	99.18
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.16
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.15
PHA02795	437	ankyrin-like protein; Provisional	99.12
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.09
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.06
PHA02791	284	ankyrin-like protein; Provisional	99.04
PHA03095	471	ankyrin-like protein; Provisional	99.02
PHA02736	154	Viral ankyrin protein; Provisional	98.99
PHA02989	494	ankyrin repeat protein; Provisional	98.99
PHA03100	480	ankyrin repeat protein; Provisional	98.98
PHA02876	682	ankyrin repeat protein; Provisional	98.97
PHA02741	169	hypothetical protein; Provisional	98.97
PHA02743	166	Viral ankyrin protein; Provisional	98.96
PHA02791	284	ankyrin-like protein; Provisional	98.95
PHA02859	209	ankyrin repeat protein; Provisional	98.95
PHA02884	300	ankyrin repeat protein; Provisional	98.95
KOG0514	452	consensus Ankyrin repeat protein [General function	98.95
KOG4412	226	consensus 26S proteasome regulatory complex, subun	98.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.93
PHA02798	489	ankyrin-like protein; Provisional	98.93
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.93
PHA02859	209	ankyrin repeat protein; Provisional	98.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.93
PHA02798	489	ankyrin-like protein; Provisional	98.92
PHA02875	413	ankyrin repeat protein; Provisional	98.92
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.91
PHA02884	300	ankyrin repeat protein; Provisional	98.9
PHA02875	413	ankyrin repeat protein; Provisional	98.89
PHA02878	477	ankyrin repeat protein; Provisional	98.89
PHA03095	471	ankyrin-like protein; Provisional	98.88
PHA02730	672	ankyrin-like protein; Provisional	98.88
PHA02730	672	ankyrin-like protein; Provisional	98.88
PHA02878	477	ankyrin repeat protein; Provisional	98.87
PHA02876	682	ankyrin repeat protein; Provisional	98.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	98.86
PHA02917	661	ankyrin-like protein; Provisional	98.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	98.84
PHA02792	631	ankyrin-like protein; Provisional	98.84
PHA02874	434	ankyrin repeat protein; Provisional	98.82
PHA02989	494	ankyrin repeat protein; Provisional	98.8
PHA02946	446	ankyin-like protein; Provisional	98.78
PHA02874	434	ankyrin repeat protein; Provisional	98.78
PHA02736	154	Viral ankyrin protein; Provisional	98.76
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	98.76
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.73
PHA02743	166	Viral ankyrin protein; Provisional	98.73
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.71
PHA02795	437	ankyrin-like protein; Provisional	98.7
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	98.7
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	98.66
PHA03100	480	ankyrin repeat protein; Provisional	98.66
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.65
PHA02917	661	ankyrin-like protein; Provisional	98.65
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.63
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	98.6
PHA02741	169	hypothetical protein; Provisional	98.6
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	98.59
KOG0508	615	consensus Ankyrin repeat protein [General function	98.57
KOG0512	228	consensus Fetal globin-inducing factor (contains a	98.56
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.55
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.46
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.4
KOG0508	615	consensus Ankyrin repeat protein [General function	98.4
PHA02792	631	ankyrin-like protein; Provisional	98.38
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.37
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.32
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.24
KOG0510	929	consensus Ankyrin repeat protein [General function	98.22
KOG0514	452	consensus Ankyrin repeat protein [General function	98.2
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	98.18
KOG0510	929	consensus Ankyrin repeat protein [General function	98.16
KOG0511	516	consensus Ankyrin repeat protein [General function	98.15
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.12
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	98.11
KOG2384	223	consensus Major histocompatibility complex protein	98.07
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.05
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.04
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.03
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	98.01
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.99
TIGR00870	743	trp transient-receptor-potential calcium channel p	97.93
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.89
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	97.81
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.74
KOG0522	560	consensus Ankyrin repeat protein [General function	97.64
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.5
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	97.47
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.41
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	97.27
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.2
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.05
KOG0522	560	consensus Ankyrin repeat protein [General function	96.87
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	96.85
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	96.82
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	96.39
KOG0783	1267	consensus Uncharacterized conserved protein, conta	96.24
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	96.06
KOG2505	591	consensus Ankyrin repeat protein [General function	95.46
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	94.83
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	94.65
KOG0521	785	consensus Putative GTPase activating proteins (GAP	94.53
KOG2384	223	consensus Major histocompatibility complex protein	94.44
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	93.15
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.31
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	89.97
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	87.71
KOG0511	516	consensus Ankyrin repeat protein [General function	87.21
KOG3836	605	consensus HLH transcription factor EBF/Olf-1 and r	82.34

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.58  E-value=1.9e-15  Score=73.14  Aligned_cols=51  Identities=16%  Similarity=0.203  Sum_probs=29.0

Q ss_pred             CccCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccc
Q 035417            1 MLKNG-SAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFS   51 (61)
Q Consensus         1 Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   51 (61)
                      ||++| ++++.+|..|.||||+|+.+|+.+++++|++.|++.+.++..+..+
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tp   52 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTP   52 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--H
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCH
Confidence            68888 9999999999999999999999999999999999999998666443

>PF13606 Ank_3: Ankyrin repeat

Probab=99.30  E-value=6.3e-12  Score=54.10  Aligned_cols=29  Identities=17%  Similarity=0.264  Sum_probs=27.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 035417           14 DRKTPIDVAKLNSQHDMLKLPATLHVNDG   42 (61)
Q Consensus        14 ~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~   42 (61)
                      +|+||||+|+..|+.+++++|+++|+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            59999999999999999999999999876

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.29  E-value=3.1e-12  Score=65.77  Aligned_cols=45  Identities=22%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |+++|++++.+|..|+||||+|+.+++.+++++|+++|++.+.++
T Consensus        45 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   45 LLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             HHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            456788888888888888888888888888888888888776653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.27  E-value=1.1e-11  Score=54.07  Aligned_cols=32  Identities=25%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417           14 DRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus        14 ~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +|+||||+|+..++.+++++|+++|++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            59999999999999999999999999988765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PHA02946 ankyin-like protein; Provisional

Probab=99.18  E-value=3.1e-11  Score=77.56  Aligned_cols=48  Identities=13%  Similarity=0.152  Sum_probs=43.5

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.++..+
T Consensus        58 Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g  105 (446)
T PHA02946         58 LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQH  105 (446)
T ss_pred             HHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCC
Confidence            568999999999999999999999999999999999999988776543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.16  E-value=2.7e-11  Score=57.80  Aligned_cols=35  Identities=29%  Similarity=0.513  Sum_probs=23.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPA   35 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll   35 (61)
                      |+++|++++.+|.+|+||||+|+..|+.+++++|+
T Consensus        20 Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen   20 LLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             HHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            35677788888888888888888888888887775

...

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.15  E-value=2.4e-11  Score=80.26  Aligned_cols=58  Identities=16%  Similarity=0.182  Sum_probs=48.2

Q ss_pred             CccCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc----cccccccCCCc
Q 035417            1 MLKNGSAVTLQN-MDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY----RHFSVLDESTP   58 (61)
Q Consensus         1 Ll~~ga~~~~~d-~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~~~~~~~~~   58 (61)
                      |+++||++|+.. .-+.||||||+.+|+..++++|+++|++++..|..    .|+|+..++++
T Consensus        97 li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~  159 (600)
T KOG0509|consen   97 LISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTA  159 (600)
T ss_pred             HHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchH
Confidence            578899999887 78899999999999999999999999998888765    37776666654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.12  E-value=9.1e-11  Score=75.69  Aligned_cols=56  Identities=11%  Similarity=-0.079  Sum_probs=48.3

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc----cccccccCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY----RHFSVLDES   56 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~~~~~~~   56 (61)
                      |+++||++|.+|..|+||||+|+..|+.+++++|+++|++.+.++..    .|+|+..++
T Consensus       207 LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        207 CIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            57899999999999999999999999999999999999998877654    455555543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=9.1e-11  Score=68.95  Aligned_cols=49  Identities=12%  Similarity=0.242  Sum_probs=40.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRH   49 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~   49 (61)
                      |+++|+.++.+|..|.||||-|+.-|..+++++|+..|+..|++|.++.
T Consensus       125 Lle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~  173 (226)
T KOG4412|consen  125 LLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGF  173 (226)
T ss_pred             HHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCc
Confidence            5678888888888888888888888888888888888888887776653

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.06  E-value=2.2e-10  Score=80.02  Aligned_cols=45  Identities=18%  Similarity=0.233  Sum_probs=41.7

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      ||++|+|++++|+.|+||||.||..|+.+++.+|+++|+++|..+
T Consensus       559 LLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d  603 (1143)
T KOG4177|consen  559 LLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAAD  603 (1143)
T ss_pred             hhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccc
Confidence            689999999999999999999999999999999999999988776

>PHA02791 ankyrin-like protein; Provisional

Probab=99.04  E-value=3.3e-10  Score=69.65  Aligned_cols=56  Identities=14%  Similarity=-0.024  Sum_probs=45.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc-----ccccccccCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF-----YRHFSVLDES   56 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~-----~~~~~~~~~~   56 (61)
                      |+++|++++.+|..|+||||+|+..|+.+++++|+++|++.+.++.     +.|+++..++
T Consensus        80 LL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~  140 (284)
T PHA02791         80 LLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND  140 (284)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCC
Confidence            4678999999999999999999999999999999999998766543     3355554433

>PHA03095 ankyrin-like protein; Provisional

Probab=99.02  E-value=3.8e-10  Score=71.67  Aligned_cols=48  Identities=15%  Similarity=0.097  Sum_probs=42.4

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |++.|+++|.+|..|+||||+|+..|+.+++++|++.|++++..+..+
T Consensus       243 ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g  290 (471)
T PHA03095        243 LLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDG  290 (471)
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            357899999999999999999999999999999999999988776543

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.99  E-value=7.3e-10  Score=61.99  Aligned_cols=48  Identities=13%  Similarity=0.187  Sum_probs=41.0

Q ss_pred             CccCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcccccc
Q 035417            1 MLKNGSAVTLQN-MDRKTPIDVAKLNSQHDMLKLPAT-LHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d-~~g~tpl~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~   48 (61)
                      |++.|++++.+| ..|+||||+|+..++.+++++|+. .|++.+.++..+
T Consensus        77 Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g  126 (154)
T PHA02736         77 LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAF  126 (154)
T ss_pred             HHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCC
Confidence            467899999998 599999999999999999999997 488877666443

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.99  E-value=5.7e-10  Score=72.01  Aligned_cols=47  Identities=4%  Similarity=-0.109  Sum_probs=41.7

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      +..|+++|.+|..|+||||+|+..++.+++++|++.|++++.++..+
T Consensus       243 l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G  289 (494)
T PHA02989        243 ILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDG  289 (494)
T ss_pred             HHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCC
Confidence            34578999999999999999999999999999999999988876443

>PHA03100 ankyrin repeat protein; Provisional

Probab=98.98  E-value=7.8e-10  Score=70.46  Aligned_cols=48  Identities=21%  Similarity=0.344  Sum_probs=43.3

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++|++++.+|..|.||||+|+..++.+++++|++.|++.+.++..+
T Consensus       236 Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g  283 (480)
T PHA03100        236 LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYG  283 (480)
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence            568899999999999999999999999999999999999988776544

>PHA02876 ankyrin repeat protein; Provisional

Probab=98.97  E-value=8.2e-10  Score=73.46  Aligned_cols=45  Identities=20%  Similarity=0.276  Sum_probs=41.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |++.|++++.+|..|+||||+|+..|+.+++++|+++|++.+..+
T Consensus       164 Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~  208 (682)
T PHA02876        164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIA  208 (682)
T ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccC
Confidence            578999999999999999999999999999999999999877654

>PHA02741 hypothetical protein; Provisional

Probab=98.97  E-value=1e-09  Score=62.49  Aligned_cols=46  Identities=17%  Similarity=0.309  Sum_probs=34.7

Q ss_pred             CccCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcccc
Q 035417            1 MLKNGSAVTLQNM-DRKTPIDVAKLNSQHDMLKLPAT-LHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~-~~~~~~~~~~   46 (61)
                      |++.|++++.++. +|+||||+|+..++.+++++|+. .+++.+..+.
T Consensus        83 Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~  130 (169)
T PHA02741         83 LIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA  130 (169)
T ss_pred             HHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence            3567888888774 78888888888888888888886 4777666554

>PHA02743 Viral ankyrin protein; Provisional

Probab=98.96  E-value=1.1e-09  Score=62.36  Aligned_cols=45  Identities=16%  Similarity=0.212  Sum_probs=30.8

Q ss_pred             CccCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCccc
Q 035417            1 MLKNGSAVTLQN-MDRKTPIDVAKLNSQHDMLKLPAT-LHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d-~~g~tpl~~A~~~~~~~~v~~Ll~-~~~~~~~~~   45 (61)
                      |+++|++++.+| ..|+||||+|+..++.+++++|+. .|++.+.++
T Consensus        79 Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d  125 (166)
T PHA02743         79 LVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAIN  125 (166)
T ss_pred             HHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcC
Confidence            356677777776 467777777777777777777774 566655544

>PHA02791 ankyrin-like protein; Provisional

Probab=98.95  E-value=9.9e-10  Score=67.55  Aligned_cols=46  Identities=20%  Similarity=0.107  Sum_probs=34.3

Q ss_pred             CccCCCCccccCCCCCcH-HHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTP-IDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tp-l~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      ||++|++++.+|..|.|| ||+|+..|+.+++++|+++|++.+..+.
T Consensus       179 LL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        179 LLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             HHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence            466777777777777766 7777777777777777777777766654

>PHA02859 ankyrin repeat protein; Provisional

Probab=98.95  E-value=1.2e-09  Score=64.23  Aligned_cols=46  Identities=22%  Similarity=0.281  Sum_probs=29.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKL--NSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~--~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|.+|+||||+|+.  .++.+++++|++.|++.+.++.
T Consensus       109 Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~  156 (209)
T PHA02859        109 LIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF  156 (209)
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC
Confidence            356677777777777777776654  3466677777777766655543

>PHA02884 ankyrin repeat protein; Provisional

Probab=98.95  E-value=1.2e-09  Score=67.74  Aligned_cols=44  Identities=18%  Similarity=0.116  Sum_probs=32.5

Q ss_pred             CccCCCCcccc----CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 035417            1 MLKNGSAVTLQ----NMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFR   44 (61)
Q Consensus         1 Ll~~ga~~~~~----d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~   44 (61)
                      |+++|++++.+    +..|.||||+|+..++.+++++|+++|++.+..
T Consensus        52 LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~   99 (300)
T PHA02884         52 ILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRY   99 (300)
T ss_pred             HHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcc
Confidence            46777777776    357788888887777888888888877777653

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.95  E-value=6.7e-10  Score=70.59  Aligned_cols=45  Identities=20%  Similarity=0.327  Sum_probs=38.5

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATL-HVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-~~~~~~~~   45 (61)
                      ||..|||+|.+|.+|.|+|+.||+.||.|++++|+.. +++....|
T Consensus       359 LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD  404 (452)
T KOG0514|consen  359 LLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTD  404 (452)
T ss_pred             HHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeec
Confidence            5788999999999999999999999999999999976 44444333

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=6.4e-10  Score=65.42  Aligned_cols=41  Identities=12%  Similarity=0.069  Sum_probs=25.0

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            5 GSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         5 ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |+|+|..+..|+|+||||+.+|..+++++|+++|+.+++.|
T Consensus        96 ~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD  136 (226)
T KOG4412|consen   96 GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKD  136 (226)
T ss_pred             CCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccc
Confidence            56666666666666666666666666666666666555554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.93  E-value=1.3e-09  Score=74.19  Aligned_cols=50  Identities=20%  Similarity=0.193  Sum_probs=43.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCC--HHHHHHHHhCCCCCCcccccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQ--HDMLKLPATLHVNDGFRQFYRHF   50 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~--~~~v~~Ll~~~~~~~~~~~~~~~   50 (61)
                      |+++|++++.+|..|+||||+|+..|+  .+++++|+++|++++.++..+..
T Consensus       198 LLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~T  249 (764)
T PHA02716        198 LCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMS  249 (764)
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            568999999999999999999999885  58999999999998887655443

>PHA02798 ankyrin-like protein; Provisional

Probab=98.93  E-value=1.2e-09  Score=70.51  Aligned_cols=47  Identities=17%  Similarity=0.237  Sum_probs=34.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcC---CHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNS---QHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|+|+|.+|.+|+||||+|+.++   +.+++++|+++|++.+..+..
T Consensus        95 Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~  144 (489)
T PHA02798         95 LIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKD  144 (489)
T ss_pred             HHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCC
Confidence            45677777777777888888777764   567777777777777666543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.93  E-value=1.4e-09  Score=72.80  Aligned_cols=47  Identities=15%  Similarity=0.292  Sum_probs=42.4

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |++.|+++|.+|..|+||||+|+.+|+.+++++|++.|++.+.++..
T Consensus       101 LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~  147 (664)
T PTZ00322        101 LLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKD  147 (664)
T ss_pred             HHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Confidence            56789999999999999999999999999999999999998877644

>PHA02859 ankyrin repeat protein; Provisional

Probab=98.93  E-value=1.8e-09  Score=63.48  Aligned_cols=46  Identities=11%  Similarity=0.100  Sum_probs=24.5

Q ss_pred             CccCCCCccccC-CCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQN-MDRKTPIDVAKLN---SQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d-~~g~tpl~~A~~~---~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.++ ..|+||||+|+..   +..+++++|+++|++.+.++.
T Consensus        72 Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~  121 (209)
T PHA02859         72 LIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDE  121 (209)
T ss_pred             HHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCC
Confidence            345556665554 3556666655432   245566666666655555443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.93  E-value=1.4e-09  Score=74.06  Aligned_cols=48  Identities=17%  Similarity=0.182  Sum_probs=43.7

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |++.|+++|.+|..|+||||+|+.+|+.+++++|+++|++.+.++..+
T Consensus       544 Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G  591 (823)
T PLN03192        544 LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANG  591 (823)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCC
Confidence            468899999999999999999999999999999999999988876544

>PHA02798 ankyrin-like protein; Provisional

Probab=98.92  E-value=1.1e-09  Score=70.55  Aligned_cols=46  Identities=4%  Similarity=-0.098  Sum_probs=40.6

Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            3 KNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         3 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      ..++|+|.+|..|+||||+|+..++.+++++|++.|++++..+..+
T Consensus       246 ~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G  291 (489)
T PHA02798        246 FSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELG  291 (489)
T ss_pred             HhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCC
Confidence            3468999999999999999999999999999999999988776443

>PHA02875 ankyrin repeat protein; Provisional

Probab=98.92  E-value=1.8e-09  Score=68.02  Aligned_cols=43  Identities=12%  Similarity=0.152  Sum_probs=23.7

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFR   44 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~   44 (61)
                      +++|++++.+|..|+||||+|+..|+.+++++|++.|++++..
T Consensus       155 l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~  197 (413)
T PHA02875        155 IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYF  197 (413)
T ss_pred             HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcC
Confidence            3455555555555555555555555555555555555555443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.92  E-value=1.2e-09  Score=58.45  Aligned_cols=44  Identities=16%  Similarity=0.185  Sum_probs=37.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFR   44 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~   44 (61)
                      |+..||+++.+|++|.|||..|+-.||..+|++|++.|++-..+
T Consensus        53 li~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~   96 (117)
T KOG4214|consen   53 LISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIH   96 (117)
T ss_pred             HHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCccccee
Confidence            45678999999999999999999999999999999999875443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.91  E-value=1.7e-09  Score=73.56  Aligned_cols=48  Identities=21%  Similarity=0.203  Sum_probs=44.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++|+++|.+|.+|+||||+|+..|+.+++++|+++|++.+..+..+
T Consensus       641 Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g  688 (823)
T PLN03192        641 LLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDD  688 (823)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCC
Confidence            578999999999999999999999999999999999999988776554

>PHA02884 ankyrin repeat protein; Provisional

Probab=98.90  E-value=2.2e-09  Score=66.58  Aligned_cols=48  Identities=13%  Similarity=0.178  Sum_probs=42.9

Q ss_pred             CccCCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQ-NMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++||+++.+ +..|.||||+|+..++.+++++|+..|++.+..+..+
T Consensus        89 LL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G  137 (300)
T PHA02884         89 LIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDM  137 (300)
T ss_pred             HHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            57899999986 4689999999999999999999999999988876554

>PHA02875 ankyrin repeat protein; Provisional

Probab=98.89  E-value=2.6e-09  Score=67.28  Aligned_cols=47  Identities=13%  Similarity=0.225  Sum_probs=40.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.++..|.||||+|+..|+.+++++|+++|++.+.++..
T Consensus       121 Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~  167 (413)
T PHA02875        121 LIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCC  167 (413)
T ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC
Confidence            56789999999999999999999999999999999999887766543

>PHA02878 ankyrin repeat protein; Provisional

Probab=98.89  E-value=2.5e-09  Score=68.73  Aligned_cols=43  Identities=16%  Similarity=0.264  Sum_probs=21.9

Q ss_pred             ccCCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 035417            2 LKNGSAVTLQNMD-RKTPIDVAKLNSQHDMLKLPATLHVNDGFR   44 (61)
Q Consensus         2 l~~ga~~~~~d~~-g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~   44 (61)
                      +++|++++.+|.. |+||||+|+.+|+.+++++|++.|++.+..
T Consensus       154 l~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~  197 (477)
T PHA02878        154 LSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP  197 (477)
T ss_pred             HHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCc
Confidence            3445555555544 555555555555555555555555544433

>PHA03095 ankyrin-like protein; Provisional

Probab=98.88  E-value=2.7e-09  Score=67.83  Aligned_cols=46  Identities=20%  Similarity=0.231  Sum_probs=31.9

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNS-QHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~-~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|+++|.+|..|+||||+|+..+ ..+++++|+++|++.+.++.
T Consensus        69 Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~  115 (471)
T PHA03095         69 LLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK  115 (471)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCC
Confidence            45667777777777777777777777 47777777777776665543

>PHA02730 ankyrin-like protein; Provisional

Probab=98.88  E-value=2.2e-09  Score=72.22  Aligned_cols=46  Identities=9%  Similarity=-0.053  Sum_probs=43.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|+++|++|..|+||||+|+..++.+++++|+++|++.+..+.
T Consensus       448 LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~  493 (672)
T PHA02730        448 LSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSR  493 (672)
T ss_pred             HHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence            5689999999999999999999999999999999999999887774

>PHA02730 ankyrin-like protein; Provisional

Probab=98.88  E-value=1.4e-09  Score=73.08  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=33.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHhCCCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNS--QHDMLKLPATLHVN   40 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~--~~~~v~~Ll~~~~~   40 (61)
                      ||++||+++++|..|+||||+|+..+  +.+++++|++.|++
T Consensus        63 LLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~  104 (672)
T PHA02730         63 LLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSN  104 (672)
T ss_pred             HHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCC
Confidence            57888888888888888888888866  68888888888663

>PHA02878 ankyrin repeat protein; Provisional

Probab=98.87  E-value=3.1e-09  Score=68.31  Aligned_cols=46  Identities=13%  Similarity=0.226  Sum_probs=31.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.|++.+.++.
T Consensus       187 Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~  232 (477)
T PHA02878        187 LLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDK  232 (477)
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC
Confidence            3566677777777777777777777777777777777766665543

>PHA02876 ankyrin repeat protein; Provisional

Probab=98.87  E-value=2.9e-09  Score=70.88  Aligned_cols=51  Identities=16%  Similarity=0.266  Sum_probs=43.7

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCccccccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNS-QHDMLKLPATLHVNDGFRQFYRHFS   51 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~~   51 (61)
                      |+++|+++|.+|.+|+||||+|+..+ +.+++++|++.|++.+..+..+.++
T Consensus       428 Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tp  479 (682)
T PHA02876        428 LIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYP  479 (682)
T ss_pred             HHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            46789999999999999999999876 6899999999999988887555443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=98.86  E-value=1.3e-09  Score=63.87  Aligned_cols=44  Identities=11%  Similarity=0.061  Sum_probs=31.4

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFR   44 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~   44 (61)
                      |+..||+++++...||||||.||..++.+++.+|+++|+++++.
T Consensus       116 ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~  159 (228)
T KOG0512|consen  116 LLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQ  159 (228)
T ss_pred             HHHccCCcccccccCccchhhhhcccchhHHHHHHhccCccccc
Confidence            34567777777777777777777777777777777777776654

>PHA02917 ankyrin-like protein; Provisional

Probab=98.85  E-value=4e-09  Score=70.79  Aligned_cols=47  Identities=11%  Similarity=0.047  Sum_probs=43.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++||+++.+|..|+||||+|+..++.+++++|++.|++.+..+..
T Consensus       438 Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~  484 (661)
T PHA02917        438 CLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNN  484 (661)
T ss_pred             HHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC
Confidence            56899999999999999999999999999999999999998877644

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=98.84  E-value=5.9e-09  Score=53.39  Aligned_cols=50  Identities=18%  Similarity=0.240  Sum_probs=38.5

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc----ccccccccC
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF----YRHFSVLDE   55 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~----~~~~~~~~~   55 (61)
                      ++.+.+++.    |+||||+|+..|+.+++++|++.|++.+.++.    +.|+++..+
T Consensus        17 l~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen   17 LEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTT
T ss_pred             HHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcC
Confidence            456666665    99999999999999999999999999888753    345554433

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02792 ankyrin-like protein; Provisional

Probab=98.84  E-value=3.5e-09  Score=70.85  Aligned_cols=48  Identities=2%  Similarity=-0.089  Sum_probs=43.3

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++||++|.+|..|+||||+|+..++.+++++|+++|++.+..+..+
T Consensus       396 LIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G  443 (631)
T PHA02792        396 CKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYG  443 (631)
T ss_pred             HHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            357899999999999999999999999999999999999988776544

>PHA02874 ankyrin repeat protein; Provisional

Probab=98.82  E-value=6e-09  Score=66.25  Aligned_cols=41  Identities=20%  Similarity=0.285  Sum_probs=19.9

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDG   42 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~   42 (61)
                      +++|++++.+|..|.||||+|+..++.+++++|++.|++.+
T Consensus       144 l~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n  184 (434)
T PHA02874        144 FEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN  184 (434)
T ss_pred             HhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC
Confidence            34444444444455555555555555555555555444433

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.80  E-value=6.3e-09  Score=67.23  Aligned_cols=45  Identities=24%  Similarity=0.406  Sum_probs=29.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCC-Cccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLN---SQHDMLKLPATLHVND-GFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~---~~~~~v~~Ll~~~~~~-~~~~   45 (61)
                      |+++|||+|.+|..|+||||.|+..   ++.+++++|+++|++. +..+
T Consensus        94 Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d  142 (494)
T PHA02989         94 LLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKN  142 (494)
T ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccC
Confidence            4566777777777777777766543   4567777777777766 4443

>PHA02946 ankyin-like protein; Provisional

Probab=98.78  E-value=8e-09  Score=66.55  Aligned_cols=46  Identities=17%  Similarity=0.293  Sum_probs=33.9

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNS--QHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|.+|+||||+|+.++  +.+++++|+. |++.+.++..
T Consensus       194 Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~  241 (446)
T PHA02946        194 MMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKF  241 (446)
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCC
Confidence            45678888888888888888888765  6778888774 6776666543

>PHA02874 ankyrin repeat protein; Provisional

Probab=98.78  E-value=1e-08  Score=65.24  Aligned_cols=46  Identities=15%  Similarity=0.175  Sum_probs=41.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |++.|++++.+|..|.||||+|+..|+.+++++|++.|++.+.++.
T Consensus       110 ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~  155 (434)
T PHA02874        110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD  155 (434)
T ss_pred             HHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCC
Confidence            3577899999999999999999999999999999999999877654

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.76  E-value=1.5e-08  Score=56.67  Aligned_cols=42  Identities=19%  Similarity=0.172  Sum_probs=37.9

Q ss_pred             Ccc-CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 035417            1 MLK-NGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDG   42 (61)
Q Consensus         1 Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~   42 (61)
                      |++ .|++++.+|..|+||||+|+..++.+++++|+..|++.+
T Consensus       111 Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        111 LCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            344 489999999999999999999999999999999998764

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=98.76  E-value=3.7e-09  Score=63.90  Aligned_cols=51  Identities=12%  Similarity=-0.000  Sum_probs=43.1

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccccccC
Q 035417            5 GSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVLDE   55 (61)
Q Consensus         5 ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   55 (61)
                      ...+|..|+.|.|||.||+..|+..+|++|+..|++++..-.++-.+....
T Consensus       150 ~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLA  200 (296)
T KOG0502|consen  150 NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLA  200 (296)
T ss_pred             hccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHH
Confidence            456888999999999999999999999999999999887776665555433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.73  E-value=1.2e-08  Score=69.45  Aligned_cols=44  Identities=14%  Similarity=0.103  Sum_probs=34.4

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCH-----HHHHHHHhCCCCCCcc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQH-----DMLKLPATLHVNDGFR   44 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----~~v~~Ll~~~~~~~~~   44 (61)
                      |++.|+++|.+|.+|+||||+|+.+|+.     +++++|+++|++.+..
T Consensus       521 LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        521 LLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             HHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcchH
Confidence            4677888888888888888888887765     7888888888776544

>PHA02743 Viral ankyrin protein; Provisional

Probab=98.73  E-value=2.5e-08  Score=56.81  Aligned_cols=44  Identities=11%  Similarity=0.000  Sum_probs=40.2

Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            3 KNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         3 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      +.|++++.+|..|+||||+|+..++.+++++|+++|++.+..+.
T Consensus       116 ~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743        116 QLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             ccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence            47999999999999999999999999999999999998876653

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.71  E-value=3.7e-09  Score=66.13  Aligned_cols=53  Identities=11%  Similarity=-0.001  Sum_probs=41.4

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVL   53 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~   53 (61)
                      ||+..+|+|+.++.|.|||||||..|+..+.+-|+..|+..++.+.+++..+-
T Consensus        86 ll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpld  138 (448)
T KOG0195|consen   86 LLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLD  138 (448)
T ss_pred             HHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchh
Confidence            45667788888888888888888888888888888888888887777766543

>PHA02795 ankyrin-like protein; Provisional

Probab=98.70  E-value=1.9e-08  Score=65.12  Aligned_cols=44  Identities=20%  Similarity=0.169  Sum_probs=39.3

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcC--------CHHHHHHHHhCCCCCCcc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNS--------QHDMLKLPATLHVNDGFR   44 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~--------~~~~v~~Ll~~~~~~~~~   44 (61)
                      |+++|++++.+|..|+||||+|+.+|        +.+++++|+++|++.+..
T Consensus       240 LL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~  291 (437)
T PHA02795        240 LLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCI  291 (437)
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCch
Confidence            57899999999999999999999988        469999999999976543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=98.70  E-value=1.5e-08  Score=67.32  Aligned_cols=47  Identities=17%  Similarity=0.253  Sum_probs=31.3

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|||++.+|.+|.+|+|.|++.++.-++-+|+.++++.+.+|..
T Consensus       131 LlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~  177 (600)
T KOG0509|consen  131 LLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNN  177 (600)
T ss_pred             HHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCC
Confidence            45667777777777777777777777766666777666666655543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=98.66  E-value=4.1e-08  Score=46.58  Aligned_cols=33  Identities=15%  Similarity=0.122  Sum_probs=27.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417           15 RKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus        15 g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+||||+|+..|+.+++++|++.|.+.+.++..
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~   33 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDED   33 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TT
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC
Confidence            789999999999999999999999998877643

...

>PHA03100 ankyrin repeat protein; Provisional

Probab=98.66  E-value=2.9e-08  Score=63.33  Aligned_cols=41  Identities=17%  Similarity=0.149  Sum_probs=20.9

Q ss_pred             ccCCCCccccCCCCCcHHHHHH--HcCCHHHHHHHHhCCCCCC
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAK--LNSQHDMLKLPATLHVNDG   42 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~--~~~~~~~v~~Ll~~~~~~~   42 (61)
                      +++|++++..|..|.||||+|+  ..++.+++++|++.|++.+
T Consensus        93 l~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~  135 (480)
T PHA03100         93 LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN  135 (480)
T ss_pred             HHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC
Confidence            3445555555555555555555  5555555555555554443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.65  E-value=4.4e-08  Score=55.47  Aligned_cols=53  Identities=25%  Similarity=0.355  Sum_probs=44.0

Q ss_pred             CccCCC---CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccccc
Q 035417            1 MLKNGS---AVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVL   53 (61)
Q Consensus         1 Ll~~ga---~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~   53 (61)
                      |++.|+   ..+.+|..|+||||+|+..|+.+++++|++.+++.+.++.++..+..
T Consensus       130 ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~  185 (235)
T COG0666         130 LLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALD  185 (235)
T ss_pred             HHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchh
Confidence            467788   55566999999999999999999999999999998887666554443

>PHA02917 ankyrin-like protein; Provisional

Probab=98.65  E-value=2.8e-08  Score=66.83  Aligned_cols=45  Identities=7%  Similarity=0.152  Sum_probs=39.4

Q ss_pred             CccCCCCccccCCCCCcHHHHH--HHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVA--KLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A--~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |+++|+|+|.+|.+|+|||+++  +.+++.+++++|+++|++.+..+
T Consensus       122 Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d  168 (661)
T PHA02917        122 LVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYED  168 (661)
T ss_pred             HHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccc
Confidence            5789999999999999999964  45789999999999999987553

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.63  E-value=1.9e-08  Score=66.60  Aligned_cols=38  Identities=21%  Similarity=0.185  Sum_probs=20.7

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHV   39 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~   39 (61)
                      |+.|+++|+.|.+||||||.|+.-++.-+++.|.+.|+
T Consensus       603 i~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~Ga  640 (752)
T KOG0515|consen  603 IEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGA  640 (752)
T ss_pred             HhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccc
Confidence            44555555555555555555555555555555555554

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=98.60  E-value=2.7e-08  Score=69.91  Aligned_cols=46  Identities=22%  Similarity=0.275  Sum_probs=42.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      ++++|++++.++.+|.||||.||..|+..+|++|+++|++.+.++.
T Consensus       526 l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~  571 (1143)
T KOG4177|consen  526 LLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDK  571 (1143)
T ss_pred             HhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCC
Confidence            4678999999999999999999999999999999999999888773

>PHA02741 hypothetical protein; Provisional

Probab=98.60  E-value=7.5e-08  Score=54.80  Aligned_cols=52  Identities=10%  Similarity=0.110  Sum_probs=42.1

Q ss_pred             CCCCccccCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCccc-----cccccccccC
Q 035417            4 NGSAVTLQNMDRKTPIDVAKLNSQ----HDMLKLPATLHVNDGFRQ-----FYRHFSVLDE   55 (61)
Q Consensus         4 ~ga~~~~~d~~g~tpl~~A~~~~~----~~~v~~Ll~~~~~~~~~~-----~~~~~~~~~~   55 (61)
                      .|++++.+|..|+||||+|+..++    .+++++|++.|++.+.++     .+.|+++...
T Consensus        49 ~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~  109 (169)
T PHA02741         49 HAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRR  109 (169)
T ss_pred             hhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcC
Confidence            468899999999999999999998    589999999999877654     2346555433

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=98.59  E-value=1.5e-08  Score=61.36  Aligned_cols=48  Identities=10%  Similarity=0.008  Sum_probs=41.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      ||.++.|+|..|.+|-|||.+|+..|+.++++.|+..|++.+..+.++
T Consensus       212 LL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsG  259 (296)
T KOG0502|consen  212 LLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSG  259 (296)
T ss_pred             HHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccC
Confidence            567889999999999999999999999999999999999877666444

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.57  E-value=1.4e-08  Score=66.43  Aligned_cols=40  Identities=13%  Similarity=0.132  Sum_probs=16.9

Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 035417            3 KNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDG   42 (61)
Q Consensus         3 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~   42 (61)
                      ++|+|++..|..|.|.||+||.+|+.+++++|++.|+++|
T Consensus       138 E~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn  177 (615)
T KOG0508|consen  138 EHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN  177 (615)
T ss_pred             HcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc
Confidence            3444444444444444444444444444444444444433

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=98.56  E-value=1e-07  Score=56.04  Aligned_cols=50  Identities=16%  Similarity=0.115  Sum_probs=42.6

Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccccccCC
Q 035417            7 AVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVLDES   56 (61)
Q Consensus         7 ~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   56 (61)
                      -+|.+|.+|.||||-|+.+|+..+++.|+..|++.+.+-.-+|.++...|
T Consensus        89 ~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAc  138 (228)
T KOG0512|consen   89 HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSAC  138 (228)
T ss_pred             cccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhh
Confidence            57899999999999999999999999999999998877656665554443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.55  E-value=4.8e-08  Score=52.38  Aligned_cols=48  Identities=21%  Similarity=0.200  Sum_probs=40.8

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccccc
Q 035417            5 GSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVL   53 (61)
Q Consensus         5 ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~   53 (61)
                      |.++|.. ..|++|||+|+..|+.+++++|+..|++.+..+.|+..+.+
T Consensus        25 g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLL   72 (117)
T KOG4214|consen   25 GLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLL   72 (117)
T ss_pred             cccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHH
Confidence            4455533 48999999999999999999999999999999988876654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.53  E-value=1.4e-07  Score=63.35  Aligned_cols=45  Identities=27%  Similarity=0.364  Sum_probs=39.7

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC-------CCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATL-------HVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-------~~~~~~~~   45 (61)
                      |+++|++++.+|.+|+||||+|+..++.+++++|+.+       +++.+..+
T Consensus       134 LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~  185 (664)
T PTZ00322        134 LLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDS  185 (664)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccc
Confidence            5789999999999999999999999999999999998       66554444

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.46  E-value=3.5e-07  Score=51.74  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=36.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCC-----HHHHHHHHhCCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQ-----HDMLKLPATLHV   39 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~-----~~~v~~Ll~~~~   39 (61)
                      |+..|++++.+|.+|.||||+|+.+++     .+++++|++.|+
T Consensus        92 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~  135 (235)
T COG0666          92 LLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGA  135 (235)
T ss_pred             HHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCC
Confidence            356789999999999999999999999     999999999999

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.40  E-value=1.3e-07  Score=62.10  Aligned_cols=45  Identities=22%  Similarity=0.294  Sum_probs=40.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      ||..|.+++.+|.+||||||.|+..++.+++++|+.+|++.+...
T Consensus       217 Ll~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t  261 (527)
T KOG0505|consen  217 LLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKT  261 (527)
T ss_pred             HHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhh
Confidence            567899999999999999999999999999999999999876554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.40  E-value=3.2e-07  Score=60.28  Aligned_cols=54  Identities=15%  Similarity=0.241  Sum_probs=48.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccccccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVLD   54 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~   54 (61)
                      |+++||++|.......|||--||..|+.+++|+|+++|+++++.+.++|.-.+-
T Consensus       103 L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmI  156 (615)
T KOG0508|consen  103 LLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMI  156 (615)
T ss_pred             HHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEe
Confidence            578899999988899999999999999999999999999999999888766553

>PHA02792 ankyrin-like protein; Provisional

Probab=98.38  E-value=1.2e-07  Score=63.75  Aligned_cols=49  Identities=14%  Similarity=0.087  Sum_probs=40.5

Q ss_pred             CccCCCCccccCCCCCcHHHHHHH-cCCHHHHHHHHhCCCCCCccccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKL-NSQHDMLKLPATLHVNDGFRQFYRH   49 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~-~~~~~~v~~Ll~~~~~~~~~~~~~~   49 (61)
                      |+++|||+|.++..|.||+++|+. +++.+++++|++.|++......++.
T Consensus        91 LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~  140 (631)
T PHA02792         91 LISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGY  140 (631)
T ss_pred             HHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCc
Confidence            578999999999999999999965 7999999999999997544433333

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.37  E-value=4.6e-07  Score=60.28  Aligned_cols=46  Identities=11%  Similarity=0.012  Sum_probs=40.8

Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccccccc
Q 035417            7 AVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSV   52 (61)
Q Consensus         7 ~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~   52 (61)
                      |+...+..|.|+||-|+..||.+||+||++.|+++|..|..+|..+
T Consensus       575 DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPL  620 (752)
T KOG0515|consen  575 DPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPL  620 (752)
T ss_pred             CCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchh
Confidence            5666789999999999999999999999999999999987766544

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.32  E-value=2.7e-07  Score=60.62  Aligned_cols=44  Identities=18%  Similarity=0.164  Sum_probs=33.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFR   44 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~   44 (61)
                      |+++|++||.+|..||||||.|+.-++..++++|+.+|++....
T Consensus        92 l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~av  135 (527)
T KOG0505|consen   92 LVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAV  135 (527)
T ss_pred             HHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhc
Confidence            45778888888888888888888888888888888887764433

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.24  E-value=8.9e-07  Score=55.67  Aligned_cols=42  Identities=21%  Similarity=0.345  Sum_probs=21.0

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGF   43 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~   43 (61)
                      |++|+.+|..+.-..||||+|+..|+..+|+.|+++.++.|+
T Consensus        54 l~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvna   95 (448)
T KOG0195|consen   54 LSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNA   95 (448)
T ss_pred             HhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccch
Confidence            344555555555455555555555555555555555444443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.22  E-value=1.4e-06  Score=59.89  Aligned_cols=46  Identities=17%  Similarity=0.214  Sum_probs=40.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|+|+|..|..|.||||.||..++.|..+.|++.|+++.-.+.
T Consensus       140 Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~  185 (929)
T KOG0510|consen  140 LLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDI  185 (929)
T ss_pred             HHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccC
Confidence            5678999999999999999999999999988999999988654443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.20  E-value=1.1e-06  Score=56.30  Aligned_cols=51  Identities=12%  Similarity=0.083  Sum_probs=45.2

Q ss_pred             CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccccccCC
Q 035417            6 SAVTLQ-NMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVLDES   56 (61)
Q Consensus         6 a~~~~~-d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~   56 (61)
                      .|||++ ...|+|+|++|+..|...+++.|+..|+++|++|..+..++|+.+
T Consensus       330 gnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~  381 (452)
T KOG0514|consen  330 GDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAA  381 (452)
T ss_pred             cCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhh
Confidence            377876 578999999999999999999999999999999988888887654

>smart00248 ANK ankyrin repeats

Probab=98.18  E-value=6.4e-06  Score=32.49  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=25.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 035417           14 DRKTPIDVAKLNSQHDMLKLPATLHVND   41 (61)
Q Consensus        14 ~g~tpl~~A~~~~~~~~v~~Ll~~~~~~   41 (61)
                      .|.||+++|+..+..++++.|++.+.+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4789999999999999999999988754

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.16  E-value=1.8e-06  Score=59.44  Aligned_cols=45  Identities=13%  Similarity=0.208  Sum_probs=34.2

Q ss_pred             CccCCCCcc---ccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVT---LQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~---~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      ||..||+..   ..|.+|.||||.|+..|+..+|++|+.+|++.+.++
T Consensus       360 Ll~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n  407 (929)
T KOG0510|consen  360 LLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKN  407 (929)
T ss_pred             HHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecc
Confidence            456777665   458888888888888888888888888888775544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.15  E-value=2.4e-06  Score=55.13  Aligned_cols=41  Identities=20%  Similarity=0.226  Sum_probs=38.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVND   41 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~   41 (61)
                      |++.|+++|++|....+||.+|+.-||..++++|++.|+-.
T Consensus        55 LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   55 LVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             HHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            56789999999999999999999999999999999999753

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.12  E-value=1.5e-06  Score=54.54  Aligned_cols=53  Identities=13%  Similarity=0.100  Sum_probs=40.4

Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc-----ccccccccccCCCcc
Q 035417            7 AVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFR-----QFYRHFSVLDESTPV   59 (61)
Q Consensus         7 ~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~-----~~~~~~~~~~~~~~~   59 (61)
                      ++|.+|..|.|+|..|+.+|+.+.+++|++.|+++|-.     ..+.+|+.+.+-+.|
T Consensus        37 ~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dv   94 (396)
T KOG1710|consen   37 QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDV   94 (396)
T ss_pred             hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchH
Confidence            47778888888888888888888888888888886533     345677777766543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=98.11  E-value=7.3e-06  Score=42.66  Aligned_cols=38  Identities=26%  Similarity=0.420  Sum_probs=21.8

Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 035417            3 KNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVN   40 (61)
Q Consensus         3 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~   40 (61)
                      +.|++++..+..|.||+|+|+..++.+++++|++.+.+
T Consensus        61 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~   98 (126)
T cd00204          61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD   98 (126)
T ss_pred             HcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            44445555555666666666666666666666665533

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.07  E-value=5.1e-06  Score=49.34  Aligned_cols=41  Identities=7%  Similarity=0.027  Sum_probs=36.0

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCccc
Q 035417            5 GSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLH-VNDGFRQ   45 (61)
Q Consensus         5 ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~-~~~~~~~   45 (61)
                      +.++|++|..||||++.|+..|..+.+.+|+.+| +.+...+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d   43 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTD   43 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccc
Confidence            4689999999999999999999999999999999 5555444

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.05  E-value=3.7e-06  Score=56.86  Aligned_cols=54  Identities=15%  Similarity=0.225  Sum_probs=43.2

Q ss_pred             CccCCCCccccC--------------CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc----ccccccc
Q 035417            1 MLKNGSAVTLQN--------------MDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY----RHFSVLD   54 (61)
Q Consensus         1 Ll~~ga~~~~~d--------------~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~~~~~   54 (61)
                      |+++|++++.++              ..|.|||++|+..++.+++++|++.|++.+.++..    .|+++..
T Consensus       147 LL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       147 LLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVME  218 (743)
T ss_pred             HHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhh
Confidence            578899998653              36999999999999999999999999987766543    4555443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.04  E-value=1.3e-06  Score=41.81  Aligned_cols=22  Identities=32%  Similarity=0.593  Sum_probs=12.5

Q ss_pred             CccCCCCccccCCCCCcHHHHH
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVA   22 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A   22 (61)
                      |++.|++++.+|.+|+|||++|
T Consensus        35 Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   35 LLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             HHHCT--TT---TTS--HHHH-
T ss_pred             HHHCcCCCCCCcCCCCCHHHhC
Confidence            4678999999999999999987

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.03  E-value=4.8e-06  Score=52.29  Aligned_cols=44  Identities=23%  Similarity=0.202  Sum_probs=38.9

Q ss_pred             CccCCCCccc-cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 035417            1 MLKNGSAVTL-QNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFR   44 (61)
Q Consensus         1 Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~   44 (61)
                      ||+.|+|+|. ++..+.||||+|+..|+..+..+|++.|+.....
T Consensus        64 ll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~v  108 (396)
T KOG1710|consen   64 LLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLV  108 (396)
T ss_pred             HHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccc
Confidence            5789999986 5889999999999999999999999999875543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=98.01  E-value=1.4e-05  Score=41.53  Aligned_cols=42  Identities=26%  Similarity=0.399  Sum_probs=28.1

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGF   43 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~   43 (61)
                      ++.|++.+.++..|.||+++|+..+..+++++|++.+.+.+.
T Consensus        27 i~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~   68 (126)
T cd00204          27 LENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA   68 (126)
T ss_pred             HHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            345555566677777777777777777777777777654443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.99  E-value=6.2e-06  Score=54.62  Aligned_cols=53  Identities=21%  Similarity=0.157  Sum_probs=45.9

Q ss_pred             CccCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccccc
Q 035417            1 MLKNGSAVTLQN-MDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVL   53 (61)
Q Consensus         1 Ll~~ga~~~~~d-~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~   53 (61)
                      ||..||++|..+ ..|.||||.|+..|+..-+++|+-+|++++..+..+...+.
T Consensus       152 ll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~  205 (669)
T KOG0818|consen  152 LLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVD  205 (669)
T ss_pred             HHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHH
Confidence            567899999876 78999999999999999999999999999988866655544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=97.93  E-value=7.8e-06  Score=55.29  Aligned_cols=51  Identities=12%  Similarity=0.073  Sum_probs=40.3

Q ss_pred             ccC--CCCccccCCCCCcHHH-HHHHcCCHHHHHHHHhCCCCCCcccccccccc
Q 035417            2 LKN--GSAVTLQNMDRKTPID-VAKLNSQHDMLKLPATLHVNDGFRQFYRHFSV   52 (61)
Q Consensus         2 l~~--ga~~~~~d~~g~tpl~-~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~   52 (61)
                      ++.  +.++|..|..|+|||| .|+.+++.+++++|++.|+.+...+...|.+.
T Consensus        37 L~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~   90 (743)
T TIGR00870        37 LEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAIS   90 (743)
T ss_pred             hccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHH
Confidence            455  7899999999999999 88899999999999999964444444445443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.89  E-value=8.8e-06  Score=56.67  Aligned_cols=45  Identities=18%  Similarity=0.141  Sum_probs=39.9

Q ss_pred             CccCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQN-MDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d-~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      ||.+|+|++.+| +.|+||||-|...|+.+++-+|+++|++.-+.|
T Consensus        71 LlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~D  116 (1267)
T KOG0783|consen   71 LLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKD  116 (1267)
T ss_pred             HHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEec
Confidence            578999999998 689999999999999999999999998755444

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.81  E-value=1.7e-05  Score=54.39  Aligned_cols=35  Identities=11%  Similarity=0.123  Sum_probs=28.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417           14 DRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus        14 ~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      .|..||.+|+.-++.+++++|+++|+|++++|..+
T Consensus       239 fGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~G  273 (782)
T KOG3676|consen  239 FGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNG  273 (782)
T ss_pred             eccCchHHHHHcCCHHHHHHHHhcCCCCCccccCC
Confidence            35678888888888999999998888888887654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.74  E-value=2.4e-05  Score=54.75  Aligned_cols=40  Identities=18%  Similarity=0.359  Sum_probs=36.0

Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 035417            3 KNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDG   42 (61)
Q Consensus         3 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~   42 (61)
                      -.|..++.+|..||||||||+..|+.+++..|++-|++..
T Consensus       629 ~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  629 ADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPG  668 (975)
T ss_pred             ecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccc
Confidence            3577899999999999999999999999999998887654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.64  E-value=7.7e-05  Score=49.56  Aligned_cols=48  Identities=6%  Similarity=0.068  Sum_probs=41.9

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccccccc
Q 035417            5 GSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSV   52 (61)
Q Consensus         5 ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~   52 (61)
                      +..++.+|..|.||||.|+.-|+.+.+++|+..|++...++..++.++
T Consensus        45 ~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L   92 (560)
T KOG0522|consen   45 SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPL   92 (560)
T ss_pred             hceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHH
Confidence            456788999999999999999999999999999999888887666554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.50  E-value=3.9e-05  Score=50.76  Aligned_cols=43  Identities=16%  Similarity=0.294  Sum_probs=36.3

Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCccc
Q 035417            3 KNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATL-HVNDGFRQ   45 (61)
Q Consensus         3 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-~~~~~~~~   45 (61)
                      -.|.|++.+|.+.+|+||.|+..|+.+++++|+.. +.+++.+|
T Consensus       527 l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kD  570 (622)
T KOG0506|consen  527 LQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKD  570 (622)
T ss_pred             HhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhh
Confidence            46889999999999999999999999999999976 34455444

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=97.47  E-value=8.5e-05  Score=51.17  Aligned_cols=45  Identities=13%  Similarity=0.237  Sum_probs=36.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      ||.++..+|+.+..|-||||.|++.++.+++.+|+++|+++-.++
T Consensus       101 ll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~n  145 (854)
T KOG0507|consen  101 LLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRN  145 (854)
T ss_pred             HHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccC
Confidence            355667788888889999999999999999999999888754443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.41  E-value=0.00016  Score=48.83  Aligned_cols=40  Identities=13%  Similarity=0.145  Sum_probs=28.4

Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 035417            3 KNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDG   42 (61)
Q Consensus         3 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~   42 (61)
                      =+|+|+-++|..|+|+|.||-+.|..+++.+|+.+|+.+.
T Consensus       682 Wyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  682 WYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             HhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            3567777777777777777777777777777777776543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.27  E-value=0.00026  Score=48.85  Aligned_cols=45  Identities=20%  Similarity=0.326  Sum_probs=36.9

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--CCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVN--DGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~--~~~~~   45 (61)
                      |+++|||++++|..|+|-||.-+..-..++-+++++.|++  ...++
T Consensus       259 Ll~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N  305 (782)
T KOG3676|consen  259 LLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRN  305 (782)
T ss_pred             HHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence            5678999999999999999988888888888888888887  44444

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.20  E-value=0.00013  Score=50.47  Aligned_cols=45  Identities=18%  Similarity=0.237  Sum_probs=40.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |+.+|+++|.+|..|++|+|.+...|+...+..|+++|++.++.+
T Consensus       675 ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~  719 (785)
T KOG0521|consen  675 LLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFD  719 (785)
T ss_pred             HHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccC
Confidence            578899999999999999999999999999999999998877654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.05  E-value=0.0005  Score=46.55  Aligned_cols=52  Identities=19%  Similarity=0.149  Sum_probs=40.3

Q ss_pred             CccCCCC--cc--ccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccccccc
Q 035417            1 MLKNGSA--VT--LQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSV   52 (61)
Q Consensus         1 Ll~~ga~--~~--~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~   52 (61)
                      ||.+|..  +|  .-+.+|+|+||+||..|+..+.++|+=+|++...+|..+-.++
T Consensus       643 LLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l  698 (749)
T KOG0705|consen  643 LLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTAL  698 (749)
T ss_pred             HHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhh
Confidence            3556643  22  3467889999999999999999999999999888876654433

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.87  E-value=0.0011  Score=44.21  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=31.9

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATL   37 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~   37 (61)
                      |+..||++..+|..||+|||-|+..|...++..++.+
T Consensus        74 Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   74 LLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             HHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            5788999999999999999999999998777666654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=96.85  E-value=0.0015  Score=43.79  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=32.5

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPAT   36 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~   36 (61)
                      |+-+|||+.++|.+|.||+.+|-..||-++.+-|++
T Consensus       186 L~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  186 LAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             HhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            346899999999999999999999999998888765

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=96.82  E-value=0.00042  Score=47.90  Aligned_cols=33  Identities=27%  Similarity=0.246  Sum_probs=18.5

Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 035417            7 AVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHV   39 (61)
Q Consensus         7 ~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~   39 (61)
                      ++|.+|.+|.|+||.|+.+|+.+++++|++..+
T Consensus        41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea   73 (854)
T KOG0507|consen   41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEA   73 (854)
T ss_pred             cccccCccchhHHHHHHhcCchHHHHHHhcchh
Confidence            344555555555555555555555555555544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=96.39  E-value=0.0016  Score=47.47  Aligned_cols=41  Identities=10%  Similarity=0.164  Sum_probs=29.7

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVND   41 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~   41 (61)
                      |+.+|++++.+|+.|.+||..|+..|+..+|+.|+++.++.
T Consensus       776 lv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~v  816 (2131)
T KOG4369|consen  776 LVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV  816 (2131)
T ss_pred             HHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhh
Confidence            34567777777777777777777777777777777766553

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=96.24  E-value=0.001  Score=46.95  Aligned_cols=40  Identities=8%  Similarity=0.093  Sum_probs=35.9

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            8 VTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         8 ~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      .|.+|..|+|+||.|+..+..++++.|+++|.+...+|.-
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~E   84 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEE   84 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeecccc
Confidence            4678999999999999999999999999999998777643

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=96.06  E-value=0.0032  Score=45.97  Aligned_cols=41  Identities=15%  Similarity=0.216  Sum_probs=20.0

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDG   42 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~   42 (61)
                      |..|++-..++-...|||.+|...|+.++|++|+..|+.++
T Consensus       844 l~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseIn  884 (2131)
T KOG4369|consen  844 LNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEIN  884 (2131)
T ss_pred             HHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccc
Confidence            34444444444445555555555555555555555554443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.46  E-value=0.023  Score=38.23  Aligned_cols=39  Identities=8%  Similarity=-0.077  Sum_probs=32.4

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417           10 LQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus        10 ~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      +.+.--.|+||+|+.+|..+++.+|++.|+++...+..+
T Consensus       425 ~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~G  463 (591)
T KOG2505|consen  425 ANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAG  463 (591)
T ss_pred             ccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCC
Confidence            445557899999999999999999999999877666443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=94.83  E-value=0.027  Score=37.86  Aligned_cols=35  Identities=20%  Similarity=0.176  Sum_probs=31.5

Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 035417            4 NGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLH   38 (61)
Q Consensus         4 ~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~   38 (61)
                      .+++++.+|.+|+|||.-|..-++.+++++|.+.-
T Consensus       562 ~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  562 CKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             HcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            46788999999999999999999999999997753

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.65  E-value=0.046  Score=38.44  Aligned_cols=30  Identities=17%  Similarity=0.008  Sum_probs=26.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 035417           12 NMDRKTPIDVAKLNSQHDMLKLPATLHVND   41 (61)
Q Consensus        12 d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~   41 (61)
                      -.-+.||+.+|+..++.||+++|+.+|+..
T Consensus       128 ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen  128 FTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             CCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            356899999999999999999999999763

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=94.53  E-value=0.035  Score=38.92  Aligned_cols=43  Identities=9%  Similarity=-0.083  Sum_probs=35.1

Q ss_pred             CCCCccc--cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            4 NGSAVTL--QNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         4 ~ga~~~~--~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      +++++|.  +-..|.|+||.|+..+...++++|++.|++.|..+.
T Consensus       643 ~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~  687 (785)
T KOG0521|consen  643 HGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDS  687 (785)
T ss_pred             chhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhc
Confidence            3445553  346789999999999999999999999999887763

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=94.44  E-value=0.066  Score=32.19  Aligned_cols=39  Identities=10%  Similarity=0.102  Sum_probs=35.3

Q ss_pred             CccCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 035417            1 MLKNG-SAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHV   39 (61)
Q Consensus         1 Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~   39 (61)
                      |+.+| +.+...|..|.+++.+|..+|...+++.|.+.-.
T Consensus        31 llgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen   31 LLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             HhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            57788 8999999999999999999999999999988643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=93.15  E-value=0.11  Score=35.89  Aligned_cols=35  Identities=14%  Similarity=0.167  Sum_probs=19.0

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 035417            5 GSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHV   39 (61)
Q Consensus         5 ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~   39 (61)
                      |.++=.++.+..|.||+|+..|+.++|++++.+|.
T Consensus       889 gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p  923 (1004)
T KOG0782|consen  889 GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGP  923 (1004)
T ss_pred             CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCC
Confidence            33444445555555566555555566665555553

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.31  E-value=0.33  Score=30.06  Aligned_cols=39  Identities=15%  Similarity=0.135  Sum_probs=32.2

Q ss_pred             ccCC-CCccc---cCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 035417            2 LKNG-SAVTL---QNMDRKTPIDVAKLNSQHDMLKLPATLHVN   40 (61)
Q Consensus         2 l~~g-a~~~~---~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~   40 (61)
                      |++| +++|.   +-..|.|-|.-|...+..+++.+|+++|+-
T Consensus       237 i~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  237 INRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            3455 56664   357899999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=89.97  E-value=0.23  Score=34.50  Aligned_cols=36  Identities=8%  Similarity=0.045  Sum_probs=31.3

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc
Q 035417            8 VTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGF   43 (61)
Q Consensus         8 ~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~   43 (61)
                      ++..|..|.|+||.|+..++..+.++|.+.|++..-
T Consensus       927 ld~~de~get~lhkaa~~~~r~vc~~lvdagasl~k  962 (1004)
T KOG0782|consen  927 LDMADETGETALHKAACQRNRAVCQLLVDAGASLRK  962 (1004)
T ss_pred             HHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhhee
Confidence            466789999999999999999999999999987443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=87.71  E-value=0.19  Score=35.58  Aligned_cols=34  Identities=9%  Similarity=0.063  Sum_probs=31.2

Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 035417            6 SAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHV   39 (61)
Q Consensus         6 a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~   39 (61)
                      .++|.+|.-|+++|+.|..+.+.+++++|++++.
T Consensus        53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~   86 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSS   86 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHHHHhcCcc
Confidence            5788999999999999999999999999999864

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=87.21  E-value=0.44  Score=31.54  Aligned_cols=42  Identities=14%  Similarity=-0.067  Sum_probs=33.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcccc----ccccccccCCCcc
Q 035417           18 PIDVAKLNSQHDMLKLPATLHVNDGFRQF----YRHFSVLDESTPV   59 (61)
Q Consensus        18 pl~~A~~~~~~~~v~~Ll~~~~~~~~~~~----~~~~~~~~~~~~~   59 (61)
                      -|-.||..|..+.++.|++.|.++|.++.    +..++-++++-|+
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~v   84 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDV   84 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHH
Confidence            36789999999999999999999887763    3566666666543

>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]

Probab=82.34  E-value=0.47  Score=32.60  Aligned_cols=38  Identities=13%  Similarity=0.289  Sum_probs=33.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLH   38 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~   38 (61)
                      |++.|+.++.+|..|.+|+|+++..|..++++.++...
T Consensus       415 lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~  452 (605)
T KOG3836|consen  415 LIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCK  452 (605)
T ss_pred             eecccCccchhcccccccccccCCCCCHHHhhhhhhhh
Confidence            35677888999999999999999999999999887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	61
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.42
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.42
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.34
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.33
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.32
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.3
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.29
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.29
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.23
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.23
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.22
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.21
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.2
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.2
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.2
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.2
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.2
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.2
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.17
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.17
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.1
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.06
2etb_A	256	Transient receptor potential cation channel subfam	99.05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.02
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.02
2pnn_A	273	Transient receptor potential cation channel subfa	99.02
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.01
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.01
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.0
2rfa_A	232	Transient receptor potential cation channel subfa	98.99
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	98.99
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	98.99
2rfa_A	232	Transient receptor potential cation channel subfa	98.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	98.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	98.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	98.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	98.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	98.94
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	98.94
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	98.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	98.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	98.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	98.92
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	98.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	98.92
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	98.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	98.92
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	98.91
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	98.91
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	98.88
2etb_A	256	Transient receptor potential cation channel subfam	98.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	98.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	98.85
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	98.82
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	98.81
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	98.79
3jxi_A	260	Vanilloid receptor-related osmotically activated p	98.79
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	98.77
2pnn_A	273	Transient receptor potential cation channel subfa	98.73
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	98.71
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	98.4
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	98.23

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.42  E-value=1.6e-13  Score=77.16  Aligned_cols=46  Identities=20%  Similarity=0.331  Sum_probs=30.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|+++|.+|.+|+||||+|+..|+.+++++|+++|++.+.++.
T Consensus        89 Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~  134 (169)
T 4gpm_A           89 LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS  134 (169)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            3566677777777777777777777777777777777666665543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.42  E-value=2.1e-13  Score=69.28  Aligned_cols=47  Identities=19%  Similarity=0.327  Sum_probs=43.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.|++.+.++..
T Consensus        21 Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~   67 (93)
T 1n0q_A           21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN   67 (93)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC
Confidence            46889999999999999999999999999999999999998877643

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.34  E-value=1.1e-12  Score=73.76  Aligned_cols=47  Identities=19%  Similarity=0.324  Sum_probs=38.4

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|.+|+||||+|+..|+.+++++|+++|++++.++..
T Consensus        56 ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~  102 (169)
T 4gpm_A           56 LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD  102 (169)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC
Confidence            45678888888888888888888888888888888888887776543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.33  E-value=1.7e-12  Score=77.01  Aligned_cols=49  Identities=12%  Similarity=0.133  Sum_probs=41.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRH   49 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~   49 (61)
                      |+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.++..+.
T Consensus       171 Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~  219 (269)
T 4b93_B          171 LLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQR  219 (269)
T ss_dssp             HHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSC
T ss_pred             HHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            5678999999999999999999999999999999999998887765543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.32  E-value=1.8e-12  Score=68.46  Aligned_cols=45  Identities=16%  Similarity=0.179  Sum_probs=26.5

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      +++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++.
T Consensus        60 l~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  104 (123)
T 3aaa_C           60 LLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP  104 (123)
T ss_dssp             HTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            455566666666666666666666666666666666655554443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.30  E-value=3.3e-12  Score=66.75  Aligned_cols=47  Identities=19%  Similarity=0.347  Sum_probs=42.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|+++|++.+..+..
T Consensus        43 Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~   89 (110)
T 2zgd_A           43 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF   89 (110)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccC
Confidence            46789999999999999999999999999999999999998877644

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.29  E-value=2.9e-12  Score=72.85  Aligned_cols=49  Identities=6%  Similarity=-0.056  Sum_probs=43.3

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCC------HHHHHHHHhCCCCCCccccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQ------HDMLKLPATLHVNDGFRQFYRH   49 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~------~~~v~~Ll~~~~~~~~~~~~~~   49 (61)
                      ||++|+++|.+|.+|+||||+|+..++      .+++++|+++|++++.++..+.
T Consensus        61 Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            578999999999999999999999887      6889999999999988765443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.29  E-value=2.2e-12  Score=77.01  Aligned_cols=48  Identities=15%  Similarity=0.093  Sum_probs=43.5

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++|+++|.+|..|+||||+|+..|+.+++++|+++|++.+.++..+
T Consensus       191 Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g  238 (278)
T 1dcq_A          191 LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG  238 (278)
T ss_dssp             HHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCC
Confidence            567899999999999999999999999999999999999988776543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.25  E-value=8e-12  Score=65.92  Aligned_cols=47  Identities=13%  Similarity=0.069  Sum_probs=42.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.|++.+.++..
T Consensus        26 ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~   72 (123)
T 3aaa_C           26 YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH   72 (123)
T ss_dssp             HHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             HHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC
Confidence            46789999999999999999999999999999999999998777643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.23  E-value=6.1e-12  Score=67.47  Aligned_cols=47  Identities=13%  Similarity=0.087  Sum_probs=41.0

Q ss_pred             CccCCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMD-RKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~-g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|.. |+||||+|+..++.+++++|+++|++.+.++..
T Consensus        63 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~  110 (136)
T 1d9s_A           63 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW  110 (136)
T ss_dssp             HHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSS
T ss_pred             HHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC
Confidence            46788999999998 999999999999999999999999988777643

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.23  E-value=1e-11  Score=62.92  Aligned_cols=40  Identities=23%  Similarity=0.403  Sum_probs=37.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVN   40 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~   40 (61)
                      |+++|++++.+|.+|+||||+|+..++.+++++|++.|++
T Consensus        54 Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           54 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5688999999999999999999999999999999999874

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.23  E-value=9.4e-12  Score=66.58  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=21.6

Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            3 KNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         3 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      ++|++++.+|..|+||||+|+..++.+++++|++.|++.+.++
T Consensus        64 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  106 (137)
T 3c5r_A           64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN  106 (137)
T ss_dssp             HTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            4445555555555555555555555555555555555444443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.23  E-value=1.1e-11  Score=66.40  Aligned_cols=43  Identities=19%  Similarity=0.221  Sum_probs=22.5

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFR   44 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~   44 (61)
                      +++|++++.+|..|+||||+|+..++.+++++|+++|++.+..
T Consensus        67 l~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  109 (136)
T 2jab_A           67 LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ  109 (136)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             HHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCc
Confidence            3445555555555555555555555555555555555544433

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.22  E-value=4.9e-12  Score=80.20  Aligned_cols=48  Identities=25%  Similarity=0.227  Sum_probs=40.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      ||++|+++|.+|.+|+||||+|+..|+.+++++|+++|++.+.++..+
T Consensus       193 Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g  240 (497)
T 3lvq_E          193 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG  240 (497)
T ss_dssp             HHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTC
T ss_pred             HHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            467888898888899999999999999999999999988887776543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.21  E-value=9.4e-12  Score=74.62  Aligned_cols=46  Identities=24%  Similarity=0.302  Sum_probs=41.0

Q ss_pred             CccCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNM-DRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      ||++|+++|.++. .|+||||+|+..|+.+++++|+++|++++.++.
T Consensus        44 LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~   90 (337)
T 4g8k_A           44 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK   90 (337)
T ss_dssp             HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhcc
Confidence            5789999999875 599999999999999999999999998776654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.21  E-value=1.6e-11  Score=66.54  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=36.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+||||+|+..|+.+++++|++.|++.+.++.
T Consensus        54 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~   99 (156)
T 1bd8_A           54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG   99 (156)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC
Confidence            4567888888888888888888888888888888888887766553

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.21  E-value=1.2e-11  Score=67.65  Aligned_cols=46  Identities=17%  Similarity=0.127  Sum_probs=35.1

Q ss_pred             CccCCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKT-PIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~t-pl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+| |||+|+..++.+++++|+++|++.+.++.
T Consensus        63 Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~  109 (156)
T 1bi7_B           63 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA  109 (156)
T ss_dssp             HHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCC
Confidence            45677888888888887 88888888888888888888777766553

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.21  E-value=2e-11  Score=66.36  Aligned_cols=44  Identities=18%  Similarity=0.273  Sum_probs=27.8

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++
T Consensus        87 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  130 (153)
T 1awc_B           87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS  130 (153)
T ss_dssp             HTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence            45566666666666666666666666666666666666655444

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.20  E-value=2.8e-11  Score=73.06  Aligned_cols=47  Identities=9%  Similarity=0.065  Sum_probs=43.1

Q ss_pred             CccCCCCccc-cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTL-QNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |++.|+++|. +|.+|+||||+|+..|+.+++++|+++|++++.++..
T Consensus       116 l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~  163 (327)
T 1sw6_A          116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM  163 (327)
T ss_dssp             CTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT
T ss_pred             HHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            5678999999 8999999999999999999999999999998877644

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.20  E-value=2.3e-11  Score=66.55  Aligned_cols=45  Identities=18%  Similarity=0.245  Sum_probs=27.3

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      +++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++.
T Consensus        95 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  139 (165)
T 3twr_A           95 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR  139 (165)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            455666666666666666666666666666666666665555543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.20  E-value=9.1e-12  Score=73.87  Aligned_cols=55  Identities=15%  Similarity=0.196  Sum_probs=46.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc----cccccccC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY----RHFSVLDE   55 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~~~~~~   55 (61)
                      |+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..    .|+|+..+
T Consensus       138 Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g  196 (269)
T 4b93_B          138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEK  196 (269)
T ss_dssp             HHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcC
Confidence            46789999999999999999999999999999999999998877644    34544433

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.20  E-value=1.4e-11  Score=71.60  Aligned_cols=47  Identities=19%  Similarity=0.145  Sum_probs=31.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++..
T Consensus       211 Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  257 (282)
T 1oy3_D          211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD  257 (282)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--
T ss_pred             HHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCc
Confidence            45667777777777777777777777777777777777776665543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.20  E-value=2.6e-11  Score=67.28  Aligned_cols=45  Identities=11%  Similarity=0.011  Sum_probs=26.4

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      +++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++.
T Consensus        92 l~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  136 (179)
T 3f6q_A           92 LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK  136 (179)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCT
T ss_pred             HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhcc
Confidence            455566666666666666666666666666666666655555443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.20  E-value=2.3e-11  Score=71.45  Aligned_cols=50  Identities=10%  Similarity=0.092  Sum_probs=44.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHF   50 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~   50 (61)
                      |+++|++++.+|..|+||||+|+..|+.+++++|++.|++.+.++..+..
T Consensus       218 Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t  267 (299)
T 1s70_B          218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT  267 (299)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            57899999999999999999999999999999999999998887755443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.19  E-value=1.3e-11  Score=74.47  Aligned_cols=48  Identities=25%  Similarity=0.227  Sum_probs=43.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++|++++.+|.+|+||||+|+..|+.+++++|+++|++.+.++..+
T Consensus       212 Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G  259 (301)
T 2b0o_E          212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG  259 (301)
T ss_dssp             HHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTS
T ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            467899999999999999999999999999999999999988776543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.19  E-value=1.2e-11  Score=64.42  Aligned_cols=45  Identities=24%  Similarity=0.395  Sum_probs=34.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.|++.+..+
T Consensus        28 Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d   72 (115)
T 2l6b_A           28 LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS   72 (115)
T ss_dssp             HTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCC
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccC
Confidence            456777787778888888888888888888888888777766554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.19  E-value=2.1e-11  Score=65.37  Aligned_cols=47  Identities=13%  Similarity=0.176  Sum_probs=42.5

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.|++.+..+..
T Consensus        33 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~   79 (136)
T 2jab_A           33 LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI   79 (136)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC
Confidence            46889999999999999999999999999999999999988766543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.19  E-value=2.8e-11  Score=64.71  Aligned_cols=46  Identities=17%  Similarity=0.206  Sum_probs=41.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.|++.+..+.
T Consensus        29 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~   74 (137)
T 3c5r_A           29 LLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY   74 (137)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCG
T ss_pred             HHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCC
Confidence            4678999999999999999999999999999999999998776654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.18  E-value=1.8e-11  Score=68.45  Aligned_cols=44  Identities=9%  Similarity=0.114  Sum_probs=21.3

Q ss_pred             ccCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            2 LKNGSAVTLQN-MDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         2 l~~ga~~~~~d-~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++|++++.+| ..|+||||+|+..++.+++++|+++|++.+.++
T Consensus        96 l~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d  140 (183)
T 3deo_A           96 AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED  140 (183)
T ss_dssp             HHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred             HHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCC
Confidence            34444554444 445555555555555555555555544444333

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.17  E-value=2.1e-11  Score=70.70  Aligned_cols=44  Identities=16%  Similarity=0.064  Sum_probs=27.3

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++|++++.+|..|+||||+|+..|+.+++++|+++|++.+..+
T Consensus        90 l~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  133 (239)
T 1ycs_B           90 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT  133 (239)
T ss_dssp             HHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceec
Confidence            45566666666666666666666666666666666666655444

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.17  E-value=2e-11  Score=70.78  Aligned_cols=47  Identities=15%  Similarity=0.120  Sum_probs=43.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |++.|++++.+|..|+||||+|+..|+.+++++|+++|++.+.++..
T Consensus        56 Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~  102 (239)
T 1ycs_B           56 IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD  102 (239)
T ss_dssp             HTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC
Confidence            57889999999999999999999999999999999999998877644

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.17  E-value=2.2e-11  Score=72.07  Aligned_cols=48  Identities=15%  Similarity=0.105  Sum_probs=40.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPAT-LHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~   48 (61)
                      |+++|++++.+|.+|+||||+|+..|+.+++++|++ .|++.+.++..+
T Consensus       202 Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g  250 (276)
T 4hbd_A          202 LLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG  250 (276)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTS
T ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCC
Confidence            467899999999999999999999999999999998 788877776443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.17  E-value=1.2e-11  Score=74.11  Aligned_cols=51  Identities=10%  Similarity=-0.029  Sum_probs=42.1

Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccccccC
Q 035417            4 NGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVLDE   55 (61)
Q Consensus         4 ~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   55 (61)
                      .|++++.+|.+|+||||+|+..|+.+++++|+++|++++.++ ..++++..+
T Consensus       262 ~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~-~L~~A~~~~  312 (337)
T 4g8k_A          262 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD-LVMTARRNY  312 (337)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC-HHHHHHHTT
T ss_pred             cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-HHHHHHHcC
Confidence            478999999999999999999999999999999999888765 455554433

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.17  E-value=9.9e-12  Score=64.80  Aligned_cols=48  Identities=27%  Similarity=0.403  Sum_probs=43.5

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++|++++.+|..|+|||++|+..++.+++++|+++|++.+..+..+
T Consensus        61 Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~  108 (115)
T 2l6b_A           61 LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS  108 (115)
T ss_dssp             HTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCC
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccc
Confidence            578899999999999999999999999999999999999988776443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.17  E-value=3.9e-11  Score=66.01  Aligned_cols=46  Identities=9%  Similarity=0.042  Sum_probs=31.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.|++.+.++.
T Consensus        88 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  133 (172)
T 3v30_A           88 LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD  133 (172)
T ss_dssp             HHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            3466677777777777777777777777777777777766655543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.16  E-value=3.7e-11  Score=65.75  Aligned_cols=46  Identities=13%  Similarity=0.168  Sum_probs=40.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.|++.+..+.
T Consensus        61 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  106 (165)
T 3twr_A           61 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL  106 (165)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCC
Confidence            4678899999999999999999999999999999999988776653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.16  E-value=3.3e-11  Score=70.27  Aligned_cols=44  Identities=9%  Similarity=0.114  Sum_probs=21.3

Q ss_pred             ccCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            2 LKNGSAVTLQN-MDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         2 l~~ga~~~~~d-~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++|++++.+| ..|+||||+|+..|+.+++++|+++|++.+.++
T Consensus        97 l~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d  141 (244)
T 3ui2_A           97 AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED  141 (244)
T ss_dssp             HHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            34445554444 445555555555555555555555554444333

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.15  E-value=4.7e-11  Score=68.09  Aligned_cols=48  Identities=10%  Similarity=0.169  Sum_probs=39.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++..+
T Consensus       169 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  216 (241)
T 1k1a_A          169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN  216 (241)
T ss_dssp             HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCC
Confidence            467788888888888888888888888888888888888877766443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.15  E-value=2.9e-11  Score=70.25  Aligned_cols=45  Identities=11%  Similarity=0.020  Sum_probs=30.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |+++|++++.+|..|+||||+|+..|+.+++++|++.|++.+..+
T Consensus        73 Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~  117 (229)
T 2vge_A           73 LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT  117 (229)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence            355666777677777777777777777777777777766655543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.15  E-value=3.5e-11  Score=71.45  Aligned_cols=48  Identities=13%  Similarity=0.139  Sum_probs=30.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|+++|++++..+..+
T Consensus       266 Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g  313 (351)
T 3utm_A          266 LHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG  313 (351)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCC
Confidence            345666666666666666666666666666666666666666555443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.14  E-value=5.1e-11  Score=66.12  Aligned_cols=46  Identities=13%  Similarity=0.246  Sum_probs=36.7

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.|++.+..+.
T Consensus        58 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~  103 (179)
T 3f6q_A           58 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE  103 (179)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence            4567888888888888888888888888888888888887766653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.14  E-value=3.7e-11  Score=68.61  Aligned_cols=45  Identities=16%  Similarity=0.193  Sum_probs=27.2

Q ss_pred             ccC-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            2 LKN-GSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         2 l~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      +++ |++++.+|..|+||||+|+..|+.+++++|+++|++.+.++.
T Consensus       126 l~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  171 (222)
T 3ehr_A          126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI  171 (222)
T ss_dssp             TTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT
T ss_pred             HcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence            344 566666666666666666666666666666666666555543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.14  E-value=1.6e-11  Score=67.05  Aligned_cols=49  Identities=12%  Similarity=0.169  Sum_probs=36.5

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRH   49 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~   49 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++..+.
T Consensus        97 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  145 (156)
T 1bi7_B           97 LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARI  145 (156)
T ss_dssp             HHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcC
Confidence            5678999999999999999999999999999999999999887765443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.14  E-value=5.3e-11  Score=66.55  Aligned_cols=45  Identities=24%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.|++.+.++
T Consensus       120 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  164 (192)
T 2rfm_A          120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD  164 (192)
T ss_dssp             HHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            356677777777777777777777777777777777777766554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.13  E-value=5.9e-11  Score=64.43  Aligned_cols=46  Identities=11%  Similarity=0.254  Sum_probs=40.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|+++|++.+..+.
T Consensus        53 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~   98 (153)
T 1awc_B           53 LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM   98 (153)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCC
Confidence            4678899999999999999999999999999999999988776654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.13  E-value=6.3e-11  Score=68.78  Aligned_cols=47  Identities=13%  Similarity=0.016  Sum_probs=42.7

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|..|+||||+|+..|+.+++++|++.|++.+.++..
T Consensus        40 Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~   86 (229)
T 2vge_A           40 AVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH   86 (229)
T ss_dssp             HHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            46789999999999999999999999999999999999998877643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.13  E-value=2.5e-11  Score=67.91  Aligned_cols=54  Identities=13%  Similarity=0.063  Sum_probs=44.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc-----cccccccccC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ-----FYRHFSVLDE   55 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~-----~~~~~~~~~~   55 (61)
                      |++ |++++.+|..|+||||+|+..|+.+++++|+++|++.+.++     .+.|+++..+
T Consensus        63 Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~  121 (183)
T 3deo_A           63 LLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  121 (183)
T ss_dssp             HTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT
T ss_pred             HHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC
Confidence            356 89999999999999999999999999999999999987665     2345555443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.12  E-value=6.5e-11  Score=67.90  Aligned_cols=47  Identities=15%  Similarity=0.167  Sum_probs=41.2

Q ss_pred             CccCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNM-DRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.++. .|+||||+|+..++.+++++|+++|++.+.++..
T Consensus       136 Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  183 (236)
T 1ikn_D          136 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ  183 (236)
T ss_dssp             HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTT
T ss_pred             HHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCC
Confidence            4678999999987 9999999999999999999999999988777643

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.12  E-value=8e-11  Score=64.91  Aligned_cols=44  Identities=20%  Similarity=0.374  Sum_probs=24.2

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++
T Consensus       100 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  143 (169)
T 2y1l_E          100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD  143 (169)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            34555555555555555555555555555555555555544443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.11  E-value=5.9e-11  Score=65.02  Aligned_cols=44  Identities=16%  Similarity=0.138  Sum_probs=28.7

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++
T Consensus        89 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  132 (167)
T 3v31_A           89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET  132 (167)
T ss_dssp             HHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            45566666666666666666666666666666666666655544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.11  E-value=9.3e-11  Score=61.05  Aligned_cols=44  Identities=20%  Similarity=0.363  Sum_probs=31.1

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++
T Consensus        55 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~   98 (126)
T 1n0r_A           55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD   98 (126)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccC
Confidence            45677777777777777777777777777777777777665554

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.11  E-value=7.6e-11  Score=64.12  Aligned_cols=42  Identities=14%  Similarity=0.084  Sum_probs=20.9

Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 035417            3 KNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFR   44 (61)
Q Consensus         3 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~   44 (61)
                      ++|++++.+|..|+||||+|+..++.+++++|+++|++.+.+
T Consensus        58 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   99 (162)
T 1ihb_A           58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE   99 (162)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            444555555555555555555555555555555555444433

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.11  E-value=7.2e-11  Score=68.60  Aligned_cols=44  Identities=25%  Similarity=0.306  Sum_probs=25.8

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++
T Consensus       177 l~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d  220 (253)
T 1yyh_A          177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD  220 (253)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc
Confidence            45556666666666666666666666666666666665555443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.10  E-value=1.6e-10  Score=67.41  Aligned_cols=44  Identities=14%  Similarity=0.129  Sum_probs=40.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |++ |++++.+|..|+||||+|+..|+.+++++|+++|++.+.++
T Consensus        64 Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  107 (244)
T 3ui2_A           64 LLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD  107 (244)
T ss_dssp             TTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCC
Confidence            466 89999999999999999999999999999999999987766

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.09  E-value=1.1e-10  Score=66.43  Aligned_cols=47  Identities=15%  Similarity=0.115  Sum_probs=35.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++..
T Consensus       158 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  204 (231)
T 3aji_A          158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE  204 (231)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             HHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Confidence            35677777777788888888888888888888888887777666543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.09  E-value=9e-11  Score=66.98  Aligned_cols=47  Identities=15%  Similarity=0.081  Sum_probs=42.5

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATL-HVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~   47 (61)
                      |++.|++++.+|..|+||||+|+..|+.+++++|++. |++.+.++..
T Consensus        92 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~  139 (222)
T 3ehr_A           92 CLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL  139 (222)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTT
T ss_pred             HHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCC
Confidence            4678999999999999999999999999999999998 8888777644

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.09  E-value=9.8e-11  Score=63.43  Aligned_cols=46  Identities=15%  Similarity=0.206  Sum_probs=41.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|..|+||||+|+..|+.+++++|++. ++.+.++..
T Consensus        87 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~  132 (156)
T 1bd8_A           87 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDAR  132 (156)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTT
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCC
Confidence            4688999999999999999999999999999999998 777766543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.09  E-value=8.5e-11  Score=63.91  Aligned_cols=45  Identities=13%  Similarity=0.331  Sum_probs=40.4

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-Cccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVND-GFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~-~~~~   45 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|+++|++. +..+
T Consensus        89 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  134 (162)
T 1ihb_A           89 LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN  134 (162)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcC
Confidence            46889999999999999999999999999999999999873 5554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.08  E-value=1.1e-10  Score=68.59  Aligned_cols=44  Identities=23%  Similarity=0.296  Sum_probs=26.5

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++|++++.+|..|+||||+|+..|+.+++++|++.|++.+..+
T Consensus        60 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  103 (299)
T 1s70_B           60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD  103 (299)
T ss_dssp             HHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            45566666666666666666666666666666666666555443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.07  E-value=1.3e-10  Score=71.58  Aligned_cols=46  Identities=13%  Similarity=0.119  Sum_probs=37.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+||||+|+..|+.+++++|++.|++++.++.
T Consensus       330 Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~  375 (437)
T 1n11_A          330 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS  375 (437)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS
T ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCC
Confidence            4677888888888888888888888888888888888888776653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.07  E-value=1.6e-10  Score=63.67  Aligned_cols=43  Identities=16%  Similarity=0.279  Sum_probs=24.4

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFR   44 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~   44 (61)
                      +++|++++.+|..|+||||+|+..++.+++++|++.|++.+..
T Consensus        34 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   76 (169)
T 2y1l_E           34 MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV   76 (169)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Confidence            4455555555555566666655555555555555555554443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.07  E-value=1.1e-10  Score=72.41  Aligned_cols=46  Identities=20%  Similarity=0.255  Sum_probs=32.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|+++|++.+..+.
T Consensus       254 LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~  299 (368)
T 3jue_A          254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS  299 (368)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCC
Confidence            4566777777777777777777777777777777777777665543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.07  E-value=1.4e-10  Score=67.33  Aligned_cols=47  Identities=11%  Similarity=0.034  Sum_probs=41.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.|++.+.++..
T Consensus       143 Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  189 (253)
T 1yyh_A          143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR  189 (253)
T ss_dssp             HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            46789999999999999999999999999999999999988776543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.06  E-value=1.3e-10  Score=63.89  Aligned_cols=45  Identities=16%  Similarity=0.250  Sum_probs=33.4

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++
T Consensus        55 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   99 (172)
T 3v30_A           55 LLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD   99 (172)
T ss_dssp             HHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             HHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCC
Confidence            356677777777777777777777777777777777777766554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.06  E-value=1.8e-10  Score=66.77  Aligned_cols=47  Identities=13%  Similarity=0.166  Sum_probs=42.2

Q ss_pred             CccCCCCccccC--------------CCCCcHHHHHHHcCCHHHHHHHHh---CCCCCCccccc
Q 035417            1 MLKNGSAVTLQN--------------MDRKTPIDVAKLNSQHDMLKLPAT---LHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d--------------~~g~tpl~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~   47 (61)
                      |+++|++++.+|              ..|+||||+|+..|+.+++++|++   .|++.+.++..
T Consensus       112 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~  175 (260)
T 3jxi_A          112 LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR  175 (260)
T ss_dssp             HHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT
T ss_pred             HHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCC
Confidence            578899999988              689999999999999999999999   89998877654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.06  E-value=1.7e-10  Score=65.35  Aligned_cols=44  Identities=25%  Similarity=0.306  Sum_probs=24.9

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++|++++.+|..|.||||+|+..++.+++++|+++|++.+.++
T Consensus       145 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  188 (223)
T 2f8y_A          145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD  188 (223)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence            34555555555555555555555555555555555555554443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.06  E-value=1.3e-10  Score=67.39  Aligned_cols=47  Identities=15%  Similarity=0.182  Sum_probs=39.2

Q ss_pred             CccCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNM-DRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.++. .|+||||+|+..++.+++++|+++|++.+.++..
T Consensus       177 Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~  224 (282)
T 1oy3_D          177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG  224 (282)
T ss_dssp             HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Confidence            4678889988875 4999999999999999999999999988777543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.06  E-value=2.2e-10  Score=65.42  Aligned_cols=47  Identities=13%  Similarity=0.181  Sum_probs=34.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++..
T Consensus       163 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~  209 (237)
T 3b7b_A          163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKE  209 (237)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCC
Confidence            45677777777777777777777777777777777777776666543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.05  E-value=2.1e-10  Score=66.39  Aligned_cols=47  Identities=17%  Similarity=0.234  Sum_probs=42.1

Q ss_pred             CccCCCCccccCCC-------------CCcHHHHHHHcCCHHHHHHHHh---CCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMD-------------RKTPIDVAKLNSQHDMLKLPAT---LHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~-------------g~tpl~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~   47 (61)
                      |+++|++++.+|..             |+||||+|+..|+.+++++|++   .|++.+.++..
T Consensus       109 Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~  171 (256)
T 2etb_A          109 LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSL  171 (256)
T ss_dssp             HHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT
T ss_pred             HHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCC
Confidence            56889999999876             9999999999999999999999   99998877644

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.05  E-value=2e-10  Score=68.11  Aligned_cols=47  Identities=21%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|+++|++.+.++..
T Consensus       233 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~  279 (351)
T 3utm_A          233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL  279 (351)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            46789999999999999999999999999999999999998877643

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.05  E-value=2.4e-10  Score=64.82  Aligned_cols=44  Identities=23%  Similarity=0.124  Sum_probs=24.9

Q ss_pred             ccCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHH-hCCCCCCccc
Q 035417            2 LKNG-SAVTLQNMDRKTPIDVAKLNSQHDMLKLPA-TLHVNDGFRQ   45 (61)
Q Consensus         2 l~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll-~~~~~~~~~~   45 (61)
                      +++| ++++.+|..|+||||+|+..++.+++++|+ +.|++.+.++
T Consensus       160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~  205 (228)
T 2dzn_A          160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD  205 (228)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBC
T ss_pred             HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence            3445 555555555666666665555556555555 5555555444

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.04  E-value=1.6e-10  Score=64.60  Aligned_cols=45  Identities=22%  Similarity=0.235  Sum_probs=32.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.|++.+.++
T Consensus        87 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  131 (192)
T 2rfm_A           87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRN  131 (192)
T ss_dssp             HHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC
T ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            345677777777777777777777777777777777777766554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.04  E-value=2.6e-10  Score=64.65  Aligned_cols=45  Identities=16%  Similarity=0.318  Sum_probs=32.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLH-VNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~-~~~~~~~   45 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.| ++.+.++
T Consensus       126 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d  171 (228)
T 2dzn_A          126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD  171 (228)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCC
T ss_pred             HHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcC
Confidence            35667777777777777777777777777777777777 6655544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.02  E-value=2.5e-10  Score=69.86  Aligned_cols=46  Identities=15%  Similarity=0.219  Sum_probs=41.6

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      ++.|+++|.+|.+|+||||+|+..|+.+++++|++.|++.+..+..
T Consensus       153 l~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~  198 (373)
T 2fo1_E          153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS  198 (373)
T ss_dssp             HHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             HhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCC
Confidence            4789999999999999999999999999999999999988776543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.02  E-value=3.1e-10  Score=67.25  Aligned_cols=47  Identities=17%  Similarity=0.152  Sum_probs=37.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|++++.+|.+|+||||+|+..|+.+++++|++.|++.+.++..
T Consensus        78 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~  124 (285)
T 3d9h_A           78 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD  124 (285)
T ss_dssp             HHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTT
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC
Confidence            45678888888888888888888888888888888888877666533

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.02  E-value=3e-10  Score=66.39  Aligned_cols=47  Identities=17%  Similarity=0.198  Sum_probs=42.1

Q ss_pred             CccCCCCccccCC--------------CCCcHHHHHHHcCCHHHHHHHHh---CCCCCCccccc
Q 035417            1 MLKNGSAVTLQNM--------------DRKTPIDVAKLNSQHDMLKLPAT---LHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~--------------~g~tpl~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~   47 (61)
                      |+++|++++.++.              .|+||||+|+..|+.+++++|++   .|++.+.++..
T Consensus       120 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~  183 (273)
T 2pnn_A          120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV  183 (273)
T ss_dssp             HHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT
T ss_pred             HHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCC
Confidence            5788999999887              89999999999999999999999   89998877643

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.01  E-value=3.9e-10  Score=63.86  Aligned_cols=46  Identities=11%  Similarity=0.047  Sum_probs=39.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.|++.+.++.
T Consensus       111 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  156 (223)
T 2f8y_A          111 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN  156 (223)
T ss_dssp             HHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            4678889998899999999999999999999999999888776653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.01  E-value=2.4e-10  Score=62.53  Aligned_cols=41  Identities=20%  Similarity=0.243  Sum_probs=19.6

Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc
Q 035417            3 KNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGF   43 (61)
Q Consensus         3 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~   43 (61)
                      ++|++++.+|..|.||||+|+..++.+++++|++.|++.+.
T Consensus        57 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~   97 (167)
T 3v31_A           57 QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE   97 (167)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            34444444444444444444444444444444444444433

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.00  E-value=1.7e-10  Score=68.42  Aligned_cols=46  Identities=15%  Similarity=-0.016  Sum_probs=37.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+||||+|+..|+.+++++|+++|++.+..+.
T Consensus        81 Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  126 (285)
T 3kea_A           81 LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK  126 (285)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS
T ss_pred             HHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCC
Confidence            4678888888888888888888888888888888888887766543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=98.99  E-value=4.5e-10  Score=64.02  Aligned_cols=46  Identities=13%  Similarity=0.213  Sum_probs=35.9

Q ss_pred             CccCCCCccccCC-------------CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNM-------------DRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~-------------~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.++.             .|+||||+|+..|+.+++++|+++|++.+.++.
T Consensus        94 Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~  152 (232)
T 2rfa_A           94 LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS  152 (232)
T ss_dssp             HHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            4567777777654             788888888888888888888888888776653

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=98.99  E-value=3.9e-10  Score=58.65  Aligned_cols=46  Identities=20%  Similarity=0.344  Sum_probs=41.5

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|.||||+|+..++.+++++|++.|++.+.++.
T Consensus        21 Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~   66 (126)
T 1n0r_A           21 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK   66 (126)
T ss_dssp             HHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCC
Confidence            4678999999999999999999999999999999999998776653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=98.99  E-value=3.3e-10  Score=68.35  Aligned_cols=45  Identities=7%  Similarity=-0.037  Sum_probs=39.6

Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccc
Q 035417            7 AVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFS   51 (61)
Q Consensus         7 ~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   51 (61)
                      +++.+|..|+||||+|+..|+.+++++|+++|++.+.++..+..+
T Consensus       275 ~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp  319 (327)
T 1sw6_A          275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP  319 (327)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            578899999999999999999999999999999998887554433

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=98.97  E-value=5e-10  Score=63.83  Aligned_cols=41  Identities=15%  Similarity=0.261  Sum_probs=38.3

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHH----HHHHhCCCCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDML----KLPATLHVND   41 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v----~~Ll~~~~~~   41 (61)
                      |+++|++++.+|..|+||||+|+..++.+++    ++|++.|++.
T Consensus       140 Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          140 LIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence            5689999999999999999999999999988    9999999876

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=98.96  E-value=4.4e-10  Score=64.93  Aligned_cols=46  Identities=17%  Similarity=0.219  Sum_probs=36.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPAT-LHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++ .|++.+.++.
T Consensus       205 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~  251 (285)
T 1wdy_A          205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS  251 (285)
T ss_dssp             HHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCT
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCC
Confidence            456788888888888888888888888888888887 6777666653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=98.96  E-value=7e-10  Score=64.08  Aligned_cols=42  Identities=12%  Similarity=0.037  Sum_probs=26.8

Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            4 NGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         4 ~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      .|++++.+|..|+||||+|+..++.+++++|+++|++.+.++
T Consensus       242 ~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            566666666666666666666666666666666666655544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=98.95  E-value=3e-09  Score=56.81  Aligned_cols=41  Identities=5%  Similarity=0.033  Sum_probs=30.9

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            5 GSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         5 ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++++.+|..|.||||+|+..|+.+++++|++.|++.+.++
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   42 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN   42 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcC
Confidence            46777777788888888888888888888887777766554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=98.94  E-value=5.7e-10  Score=68.25  Aligned_cols=47  Identities=17%  Similarity=0.097  Sum_probs=41.4

Q ss_pred             CccCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNG-SAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |++++ ++++.+|..|+||||+|+..|+.+++++|+++|++.+.++..
T Consensus       298 Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~  345 (373)
T 2fo1_E          298 LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT  345 (373)
T ss_dssp             HHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSS
T ss_pred             HHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCC
Confidence            34444 999999999999999999999999999999999998877644

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=98.94  E-value=3e-10  Score=68.62  Aligned_cols=35  Identities=11%  Similarity=0.076  Sum_probs=14.8

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 035417            8 VTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDG   42 (61)
Q Consensus         8 ~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~   42 (61)
                      ++.+|..|+||||+|+..|+.+++++|+++|++.+
T Consensus       204 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~  238 (364)
T 3ljn_A          204 LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN  238 (364)
T ss_dssp             TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            44444444444444444444444444444444433

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=98.94  E-value=9.7e-10  Score=62.47  Aligned_cols=44  Identities=14%  Similarity=0.132  Sum_probs=26.2

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++|++++.+|..|+||||+|+..++.+++++|++.|++.+..+
T Consensus        60 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  103 (231)
T 3aji_A           60 LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN  103 (231)
T ss_dssp             HHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCC
Confidence            45556666666666666666666666666666666665554443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=98.93  E-value=1.2e-09  Score=62.17  Aligned_cols=46  Identities=17%  Similarity=0.263  Sum_probs=37.9

Q ss_pred             CccCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQN-MDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d-~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.++ ..|+||||+|+..++.+++++|++.|++.+..+.
T Consensus       135 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  181 (241)
T 1k1a_A          135 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY  181 (241)
T ss_dssp             HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCT
T ss_pred             HHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            457788888887 7888999999888889999999988888776653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=98.93  E-value=8.7e-10  Score=61.55  Aligned_cols=45  Identities=20%  Similarity=0.184  Sum_probs=32.9

Q ss_pred             ccCC-CCccccCCCCCcHHHHHHHcCC-----HHHHHHHHhCCCCCCcccc
Q 035417            2 LKNG-SAVTLQNMDRKTPIDVAKLNSQ-----HDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         2 l~~g-a~~~~~d~~g~tpl~~A~~~~~-----~~~v~~Ll~~~~~~~~~~~   46 (61)
                      +++| ++++.+|..|+||||+|+..+.     .+++++|++.|++.+.++.
T Consensus       126 l~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~  176 (201)
T 3hra_A          126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDN  176 (201)
T ss_dssp             HHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCT
T ss_pred             HHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCC
Confidence            4556 7777777778888888777776     7777888777777766653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=98.92  E-value=1.3e-09  Score=60.82  Aligned_cols=40  Identities=15%  Similarity=0.201  Sum_probs=30.3

Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            6 SAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         6 a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      .+++.+|.+|+||||+|+..|+.+++++|++.|++.+.++
T Consensus        30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   69 (201)
T 3hra_A           30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN   69 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            4777777778888888888788888888887777766554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=98.92  E-value=6.1e-10  Score=68.54  Aligned_cols=46  Identities=17%  Similarity=0.202  Sum_probs=36.9

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|++++.+|..|+||||+|+..|+.+++++|+++|++.+.++.
T Consensus       297 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~  342 (437)
T 1n11_A          297 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK  342 (437)
T ss_dssp             HHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCT
T ss_pred             HHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCC
Confidence            4567888888888888888888888888888888888888776653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=98.92  E-value=6.6e-11  Score=67.18  Aligned_cols=48  Identities=13%  Similarity=-0.000  Sum_probs=39.3

Q ss_pred             CccCCCCccccCCCCC-cHHHHHHHcC-----CHHHHHHHHh-CCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRK-TPIDVAKLNS-----QHDMLKLPAT-LHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~-tpl~~A~~~~-----~~~~v~~Ll~-~~~~~~~~~~~~   48 (61)
                      |+++|+++|.+|..|+ ||||+|+..+     ..+++++|++ +|++.+.++..+
T Consensus       100 Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G  154 (186)
T 3t8k_A          100 FLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWG  154 (186)
T ss_dssp             HHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTS
T ss_pred             HHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCC
Confidence            5688999999999999 9999998844     3568899999 899988777544

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=98.92  E-value=9.8e-10  Score=64.98  Aligned_cols=47  Identities=11%  Similarity=0.065  Sum_probs=41.1

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      ++.|++++..|..|+||||+|+..|+.+++++|++.|++.+.++..+
T Consensus       170 l~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G  216 (276)
T 4hbd_A          170 FRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDG  216 (276)
T ss_dssp             HHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Confidence            45677888888999999999999999999999999999988776543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=98.92  E-value=1.2e-09  Score=62.25  Aligned_cols=45  Identities=11%  Similarity=0.191  Sum_probs=33.2

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |+++|++++.+|..|.||||+|+..++.+++++|++.|++.+..+
T Consensus       130 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  174 (237)
T 3b7b_A          130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN  174 (237)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCC
T ss_pred             HHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC
Confidence            356777777777777777777777777777777777777766554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=98.91  E-value=1.3e-09  Score=67.73  Aligned_cols=54  Identities=19%  Similarity=0.096  Sum_probs=45.8

Q ss_pred             CccCCCCccccC--CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc----ccccccc
Q 035417            1 MLKNGSAVTLQN--MDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY----RHFSVLD   54 (61)
Q Consensus         1 Ll~~ga~~~~~d--~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~~~~~   54 (61)
                      |+++|++++..+  ..|+||||+|+..++.+++++|++.|++.+..+..    .|+++..
T Consensus       219 LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            468899999988  89999999999999999999999999998877643    4554443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=98.91  E-value=8.3e-10  Score=66.69  Aligned_cols=55  Identities=16%  Similarity=0.184  Sum_probs=44.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-----CCcccc----ccccccccC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVN-----DGFRQF----YRHFSVLDE   55 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~----~~~~~~~~~   55 (61)
                      |+++|++++.+|..|+||||+|+..|+.+++++|++.|++     .+..+.    +.|+++..+
T Consensus       159 Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g  222 (364)
T 3ljn_A          159 LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN  222 (364)
T ss_dssp             HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcC
Confidence            5678999999999999999999999999999999998887     665543    345554433

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=98.88  E-value=1.9e-09  Score=63.84  Aligned_cols=43  Identities=14%  Similarity=0.292  Sum_probs=23.0

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++|++++ .|..|+||||+|+..++.+++++|+++|++.+.++
T Consensus       210 l~~ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d  252 (285)
T 3d9h_A          210 LESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKN  252 (285)
T ss_dssp             HHTTCCTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            34455555 25555555555555555555555555555555444

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=98.87  E-value=3.9e-10  Score=65.26  Aligned_cols=38  Identities=5%  Similarity=0.019  Sum_probs=35.9

Q ss_pred             CCCCccccCCCCCcHHHHHHH--cCCHH-------HHHHHHhCCCCC
Q 035417            4 NGSAVTLQNMDRKTPIDVAKL--NSQHD-------MLKLPATLHVND   41 (61)
Q Consensus         4 ~ga~~~~~d~~g~tpl~~A~~--~~~~~-------~v~~Ll~~~~~~   41 (61)
                      +|++++.+|..|+||||+|+.  .++.+       ++++|+++|++.
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            899999999999999999999  88888       999999998877

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=98.86  E-value=1.4e-09  Score=64.80  Aligned_cols=41  Identities=20%  Similarity=0.311  Sum_probs=38.4

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVND   41 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~   41 (61)
                      |+++|++++.+|.+|+||||+|+..|+.+++++|+++|+..
T Consensus       224 Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          224 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            57899999999999999999999999999999999998863

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=98.85  E-value=5.4e-10  Score=67.32  Aligned_cols=53  Identities=19%  Similarity=0.155  Sum_probs=41.7

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccccccC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVLDE   55 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~   55 (61)
                      |+++|++++.+|.+|+|||++|+..++.+++++|++.|++.+  ..+.|+++..+
T Consensus       245 Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~g--~tpLh~A~~~g  297 (301)
T 2b0o_E          245 LLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF--AFPLHVDYSWV  297 (301)
T ss_dssp             HHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHTT--SSCCC------
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC--CChhHHHHhcC
Confidence            578999999999999999999999999999999999987643  35667776544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=98.82  E-value=3.4e-09  Score=59.99  Aligned_cols=47  Identities=17%  Similarity=0.191  Sum_probs=38.8

Q ss_pred             CccCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNM-DRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |++.|++++.++. .|.||||+|+..++.+++++|+++|++.+..+..
T Consensus       162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  209 (240)
T 3eu9_A          162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK  209 (240)
T ss_dssp             HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTT
T ss_pred             HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            3567888888886 8999999999999999999999999887766543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=98.81  E-value=7.6e-09  Score=59.20  Aligned_cols=40  Identities=15%  Similarity=0.199  Sum_probs=25.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVN   40 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~   40 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|++.+++
T Consensus        64 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  103 (236)
T 1ikn_D           64 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT  103 (236)
T ss_dssp             CCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTT
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence            4556666666666666666666666666666666666543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=98.79  E-value=6.8e-09  Score=58.71  Aligned_cols=45  Identities=11%  Similarity=0.110  Sum_probs=35.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |+++|++++.+|..|.||||+|+..++.+++++|++.|++.+..+
T Consensus        95 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  139 (240)
T 3eu9_A           95 LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD  139 (240)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccC
Confidence            456788888888888888888888888888888888887766554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=98.79  E-value=9.4e-10  Score=63.67  Aligned_cols=38  Identities=11%  Similarity=0.007  Sum_probs=35.2

Q ss_pred             CCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHHhCCCCC
Q 035417            4 NGSAVTLQNMDRKTPIDVAKLNSQ---------HDMLKLPATLHVND   41 (61)
Q Consensus         4 ~ga~~~~~d~~g~tpl~~A~~~~~---------~~~v~~Ll~~~~~~   41 (61)
                      +|++++.+|..|+||||+|+..++         .+++++|+++|++.
T Consensus       165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            899999999999999999998777         79999999998876

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=98.77  E-value=8.8e-10  Score=65.35  Aligned_cols=45  Identities=20%  Similarity=0.103  Sum_probs=38.8

Q ss_pred             CccCCCCccccCCCCCcH-HHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTLQNMDRKTP-IDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tp-l~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |+++|++++.+|..|+|| ||+|+..++.+++++|+++|++.+..+
T Consensus       180 Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~  225 (285)
T 3kea_A          180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN  225 (285)
T ss_dssp             HHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred             HHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            457788888899999997 999999999999999999998887776

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=98.73  E-value=2e-09  Score=62.84  Aligned_cols=42  Identities=10%  Similarity=0.043  Sum_probs=37.7

Q ss_pred             Ccc---CCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHHhCCCCCC
Q 035417            1 MLK---NGSAVTLQNMDRKTPIDVAKLNSQ---------HDMLKLPATLHVNDG   42 (61)
Q Consensus         1 Ll~---~ga~~~~~d~~g~tpl~~A~~~~~---------~~~v~~Ll~~~~~~~   42 (61)
                      |++   +|++++.+|..|+||||+|+..++         .+++++|++.|++.+
T Consensus       167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n  220 (273)
T 2pnn_A          167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH  220 (273)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence            456   899999999999999999999888         899999999988765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=98.71  E-value=9.8e-09  Score=53.33  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=32.0

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLP   34 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~L   34 (61)
                      |+++|++++.+|..|+||||+|+..++.+++++|
T Consensus        76 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           76 LLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            5688999999999999999999999999999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=98.40  E-value=4.9e-09  Score=65.20  Aligned_cols=27  Identities=15%  Similarity=0.137  Sum_probs=18.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 035417           16 KTPIDVAKLNSQHDMLKLPATLHVNDG   42 (61)
Q Consensus        16 ~tpl~~A~~~~~~~~v~~Ll~~~~~~~   42 (61)
                      +||||+|+.+|+.+++++|+++|++.+
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~  190 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTEA  190 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCccc
Confidence            667777777777777777776666543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=98.23  E-value=4.3e-08  Score=60.95  Aligned_cols=28  Identities=14%  Similarity=0.127  Sum_probs=18.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 035417           12 NMDRKTPIDVAKLNSQHDMLKLPATLHV   39 (61)
Q Consensus        12 d~~g~tpl~~A~~~~~~~~v~~Ll~~~~   39 (61)
                      +..|.||||+|+.+|+.+++++|+++|+
T Consensus       125 ~~~~~tpL~~Aa~~G~~eiv~~Ll~~ga  152 (376)
T 2aja_A          125 QAENYQAFRLAAENGHLHVLNRLCELAP  152 (376)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHSCT
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            3455666666666666666666666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	61
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.41
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.41
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.4
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.34
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.27
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.21
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.21
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.15
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.14
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.14
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.13
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.13
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.12
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.12
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.1
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.08
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.08
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.08
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.07
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.06
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.03
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.0
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	98.98
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	98.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	98.95
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	98.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	98.9
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	98.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	98.89
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	98.88
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	98.82
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	98.51

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=6.4e-14  Score=73.48  Aligned_cols=51  Identities=14%  Similarity=0.132  Sum_probs=43.9

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFS   51 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   51 (61)
                      |+++|++++.+|..|+||||+|+.+|+.+++++|+++|++.+.++..+..+
T Consensus        54 ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~  104 (118)
T d1myoa_          54 LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA  104 (118)
T ss_dssp             HHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCC
T ss_pred             cccccceeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCH
Confidence            467899999999999999999999999999999999999988887655444

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=8.2e-14  Score=76.46  Aligned_cols=48  Identities=15%  Similarity=0.093  Sum_probs=43.7

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++|++++.+|.+|+||||+|+..|+.+++++|+++|++.+.++..+
T Consensus        67 Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g  114 (154)
T d1dcqa1          67 LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG  114 (154)
T ss_dssp             HHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCC
Confidence            467899999999999999999999999999999999999988876543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.40  E-value=1e-13  Score=79.12  Aligned_cols=47  Identities=15%  Similarity=0.217  Sum_probs=42.9

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      ++.|||+|.+|.+|+||||+|+.+|+.+++++|+++|++++.++..+
T Consensus        61 l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g  107 (277)
T d2fo1e1          61 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSE  107 (277)
T ss_dssp             HHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTC
T ss_pred             HHcCCCccccCCCCCeeeccccccccccccccccccccccccccccc
Confidence            57899999999999999999999999999999999999988776443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.34  E-value=6.4e-13  Score=76.52  Aligned_cols=49  Identities=10%  Similarity=0.108  Sum_probs=44.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRH   49 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~   49 (61)
                      |++.|++++.+|.+|+||||+|+..|+.+++++|+++|++++.++..+.
T Consensus       218 Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~  266 (291)
T d1s70b_         218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ  266 (291)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            5688999999999999999999999999999999999999988875543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5e-13  Score=70.99  Aligned_cols=43  Identities=16%  Similarity=0.065  Sum_probs=25.3

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFR   44 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~   44 (61)
                      ++.|++++.+|.+|+||||+|+..|+.+++++|+++|++++..
T Consensus        54 l~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~   96 (130)
T d1ycsb1          54 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM   96 (130)
T ss_dssp             HHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cccccccccccccCcccccccchhhHHHHHHHHHHcCCCcccc
Confidence            3455566666666666666666666666666666666555443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.2e-12  Score=69.42  Aligned_cols=47  Identities=15%  Similarity=0.120  Sum_probs=43.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY   47 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   47 (61)
                      |+++|+|++.+|.+|+||||+|+..++.+++++|++.|++.+..+..
T Consensus        20 Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~   66 (130)
T d1ycsb1          20 IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD   66 (130)
T ss_dssp             HTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT
T ss_pred             HHHcCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            57899999999999999999999999999999999999988777644

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-12  Score=74.70  Aligned_cols=42  Identities=12%  Similarity=0.037  Sum_probs=34.5

Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            4 NGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         4 ~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      .|++++.+|.+|+||||+|+..++.+++++|+++|+++|.+|
T Consensus       242 ~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            578888888888888888888888888888888888887766

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.1e-12  Score=76.66  Aligned_cols=55  Identities=11%  Similarity=0.033  Sum_probs=46.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc----ccccccC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR----HFSVLDE   55 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~----~~~~~~~   55 (61)
                      +++.|++++.+|.+|+||||+|+..|+.+++++|+++|++++.++..+    ++|+..+
T Consensus       316 ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~  374 (408)
T d1n11a_         316 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG  374 (408)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTT
T ss_pred             eccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            357899999999999999999999999999999999999998887544    4554443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=2.2e-12  Score=67.43  Aligned_cols=56  Identities=13%  Similarity=0.054  Sum_probs=47.3

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc----cccccccCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY----RHFSVLDES   56 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~~~~~~~   56 (61)
                      |+++|++++.+|.+|+||||+|+..++.+++++|++.|++.+.++..    .|+++..++
T Consensus        21 Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_          21 YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             HHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCc
Confidence            57899999999999999999999999999999999999998776543    455554443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=9.2e-12  Score=66.16  Aligned_cols=47  Identities=17%  Similarity=0.253  Sum_probs=42.8

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      +.+|++++.+|.+|+||||+|+..|+.+++++|++.|++++.++.++
T Consensus        87 ~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g  133 (153)
T d1awcb_          87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC  133 (153)
T ss_dssp             HTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCC
Confidence            46789999999999999999999999999999999999988877554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5e-12  Score=75.05  Aligned_cols=48  Identities=15%  Similarity=0.221  Sum_probs=43.6

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++|+++|.+|..|+||||+|+..|+.+++++|+++|++.+.++..+
T Consensus        19 Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g   66 (408)
T d1n11a_          19 LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD   66 (408)
T ss_dssp             HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCC
Confidence            578999999999999999999999999999999999999988776443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=9.6e-13  Score=72.74  Aligned_cols=45  Identities=13%  Similarity=0.165  Sum_probs=40.9

Q ss_pred             CccCCCCccc-cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            1 MLKNGSAVTL-QNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         1 Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      |+++|+|++. .|.+|.||||+||.+|+.+++++|+..|++++.++
T Consensus         8 Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~   53 (209)
T d1ot8a_           8 LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQD   53 (209)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccc
Confidence            5789999997 58999999999999999999999999999877664

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.9e-11  Score=64.26  Aligned_cols=48  Identities=15%  Similarity=0.125  Sum_probs=41.3

Q ss_pred             CccCCCCccccCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRK-TPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~-tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++|++++.+|..|. ||||+|+.+|+.+++++|+++|++.+.++..+
T Consensus        54 Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G  102 (125)
T d1bi7b_          54 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG  102 (125)
T ss_dssp             HHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence            5688999999988776 69999999999999999999999888777554

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.4e-11  Score=68.40  Aligned_cols=50  Identities=14%  Similarity=0.099  Sum_probs=44.5

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFS   51 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   51 (61)
                      ++.|++++.+|.+|+||||+|+..|+.+++++|++.|++.+.++..+..+
T Consensus       156 ~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tp  205 (223)
T d1uoha_         156 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTP  205 (223)
T ss_dssp             HHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             ccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            46789999999999999999999999999999999999998887665443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=3.7e-11  Score=70.43  Aligned_cols=44  Identities=7%  Similarity=-0.033  Sum_probs=39.6

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccccc
Q 035417            8 VTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFS   51 (61)
Q Consensus         8 ~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~   51 (61)
                      +|.+|.+|+||||+|+.+|+.+++++|++.|++++.++..+..+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tp  295 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP  295 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            68899999999999999999999999999999999888655443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=2e-11  Score=69.01  Aligned_cols=43  Identities=16%  Similarity=0.200  Sum_probs=21.5

Q ss_pred             cCCCCccc-cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            3 KNGSAVTL-QNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         3 ~~ga~~~~-~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +++++.+. ++..|.||||+|+..++.+++++|+++|++++.++
T Consensus       179 ~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d  222 (255)
T d1oy3d_         179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM  222 (255)
T ss_dssp             HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             cccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCC
Confidence            34444443 23455555555555555555555555555544443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.6e-11  Score=65.34  Aligned_cols=45  Identities=20%  Similarity=0.189  Sum_probs=40.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      |+++|+|++.+|.+|+||||+|+ .++.+++++|++++++.+..+.
T Consensus        20 Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~   64 (156)
T d1ihba_          20 LLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDR   64 (156)
T ss_dssp             HTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHCCCCcCccCCcccccccccc-cccccccccccccccccccccc
Confidence            57899999999999999999886 7899999999999998776653

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.12  E-value=2.4e-11  Score=69.78  Aligned_cols=44  Identities=23%  Similarity=0.310  Sum_probs=40.3

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFR   44 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~   44 (61)
                      ||++|+|+|.+|.+|+||||+|+.+|+.+++++|++++++....
T Consensus        59 Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~  102 (291)
T d1s70b_          59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP  102 (291)
T ss_dssp             HHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccc
Confidence            57899999999999999999999999999999999999875544

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.2e-11  Score=68.20  Aligned_cols=47  Identities=17%  Similarity=0.228  Sum_probs=40.5

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      ...|+++|.+|.+|+||||+|+..++.+++++|++.|++.+.++..+
T Consensus        26 ~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g   72 (221)
T d1iknd_          26 KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG   72 (221)
T ss_dssp             ---CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTC
T ss_pred             HhCCCCcccCCCCCCcccccccccccccccccccccccccccccccc
Confidence            35789999999999999999999999999999999999988776554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.6e-11  Score=64.48  Aligned_cols=43  Identities=19%  Similarity=0.268  Sum_probs=39.5

Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            3 KNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         3 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      +.|++++.+|.+|+||||+|+..|+.+++++|++.|++.+...
T Consensus        28 ~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~   70 (228)
T d1k1aa_          28 QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD   70 (228)
T ss_dssp             HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HCCCCCCccCCCCCccceehhcccccccccccccccccccccc
Confidence            5899999999999999999999999999999999998876554

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.08  E-value=6.3e-11  Score=65.22  Aligned_cols=45  Identities=16%  Similarity=0.093  Sum_probs=41.1

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQF   46 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~   46 (61)
                      ++.+++++.+|..|.||||+|+..|+.+++++|+++|++.+..+.
T Consensus       143 ~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~  187 (209)
T d1ot8a_         143 LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDH  187 (209)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCC
Confidence            567889999999999999999999999999999999999887664

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.08  E-value=4.4e-12  Score=76.05  Aligned_cols=56  Identities=11%  Similarity=0.101  Sum_probs=43.7

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc------cccccccccCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ------FYRHFSVLDES   56 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~------~~~~~~~~~~~   56 (61)
                      |++.|++++.+|.+|+||||+|+.+|+.+++++|++.|++.+..+      .+.|+|+..++
T Consensus       112 L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~  173 (346)
T d2ajaa1         112 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH  173 (346)
T ss_dssp             C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTC
T ss_pred             HHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhh
Confidence            568899999999999999999999999999999999999876543      35666666554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=2.8e-11  Score=68.35  Aligned_cols=48  Identities=13%  Similarity=0.015  Sum_probs=40.5

Q ss_pred             CccCCCC---ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSA---VTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++|++   ++.+|..|+||||+|+..|+.+++++|++.|++++..+..+
T Consensus        28 Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g   78 (255)
T d1oy3d_          28 LLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGG   78 (255)
T ss_dssp             HHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTS
T ss_pred             HHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccccccccc
Confidence            3566777   66788999999999999999999999999999988776443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.1e-11  Score=63.81  Aligned_cols=48  Identities=10%  Similarity=0.153  Sum_probs=43.0

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccccc
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRH   49 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~   49 (61)
                      +++|.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..+.
T Consensus       164 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~  211 (228)
T d1k1aa_         164 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND  211 (228)
T ss_dssp             HHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             hhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            567889999999999999999999999999999999999888775543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6.1e-11  Score=66.71  Aligned_cols=48  Identities=21%  Similarity=0.322  Sum_probs=42.4

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      |+++|++++.+|.+|+||||+|+..++.+++++|+++|++++.++..+
T Consensus        89 Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~  136 (223)
T d1uoha_          89 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE  136 (223)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            467899999999999999999999999999999999999887776544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=1.5e-10  Score=67.84  Aligned_cols=45  Identities=9%  Similarity=0.069  Sum_probs=39.4

Q ss_pred             CCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            4 NGSAVTLQ-NMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         4 ~ga~~~~~-d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      .+.++|.+ |.+|+||||+|+..|+.+++++|+++|++.+.++..+
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G  140 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG  140 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTC
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCccc
Confidence            46788866 9999999999999999999999999999988776543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=1.3e-10  Score=64.67  Aligned_cols=49  Identities=20%  Similarity=0.041  Sum_probs=41.4

Q ss_pred             ccCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcccccccc
Q 035417            2 LKNG-SAVTLQNMDRKTPIDVAKLNSQHDMLKLPAT-LHVNDGFRQFYRHF   50 (61)
Q Consensus         2 l~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~   50 (61)
                      ++.| .+++.+|.+|+||||+|+.+++.+++++|++ .|++.+.++..+..
T Consensus       158 l~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t  208 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK  208 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCC
T ss_pred             cccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCC
Confidence            4555 6889999999999999999999999999996 59998888755443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.00  E-value=1.8e-10  Score=65.31  Aligned_cols=46  Identities=20%  Similarity=0.135  Sum_probs=41.2

Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            3 KNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         3 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      ..+.+++.+|..|+||||+|+..|+.+++++|++.|++.+.++.++
T Consensus       209 ~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G  254 (277)
T d2fo1e1         209 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD  254 (277)
T ss_dssp             HSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSS
T ss_pred             cccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCC
Confidence            5678888899999999999999999999999999999988887554

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=8.2e-11  Score=61.73  Aligned_cols=36  Identities=14%  Similarity=0.325  Sum_probs=33.9

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPAT   36 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~   36 (61)
                      |+++|++++.+|..|+||||+|+.+|+.+++++|++
T Consensus        88 Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          88 LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            567899999999999999999999999999999976

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.7e-10  Score=61.08  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=32.1

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLP   34 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~L   34 (61)
                      |+++|++++.+|.+|.||||+|+.+|+.+++++|
T Consensus       119 ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            4688999999999999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.9e-10  Score=60.36  Aligned_cols=54  Identities=13%  Similarity=0.177  Sum_probs=42.3

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccccc----cccccccCC
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFY----RHFSVLDES   56 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~~~~~~~   56 (61)
                      +++|++++.+|.+|+||||+|+..|+.+++++|+ .|++.+.++..    .++|+..++
T Consensus        88 l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          88 VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             HHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCC
T ss_pred             cccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCC
Confidence            5788999999999999999999999999999887 57777666543    355544433

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=2.2e-10  Score=62.46  Aligned_cols=40  Identities=20%  Similarity=0.321  Sum_probs=36.8

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVN   40 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~   40 (61)
                      |+++|++++.+|.+|+||||+|+..|+.+++++|++.++.
T Consensus       100 Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         100 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            5789999999999999999999999999999999987653

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4.6e-10  Score=59.53  Aligned_cols=37  Identities=8%  Similarity=0.206  Sum_probs=20.2

Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 035417            3 KNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHV   39 (61)
Q Consensus         3 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~   39 (61)
                      +.+.+++..|..|.+|+++|+..+..+++++|+++++
T Consensus        87 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  123 (156)
T d1ihba_          87 EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA  123 (156)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccccccccccccccccccccccccccccccccccc
Confidence            3445555555555555555555555555555555543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=8.2e-10  Score=62.73  Aligned_cols=56  Identities=16%  Similarity=0.136  Sum_probs=45.5

Q ss_pred             CccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcccc----ccccccccCC
Q 035417            1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPAT-LHVNDGFRQF----YRHFSVLDES   56 (61)
Q Consensus         1 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~~~~~~~~~~----~~~~~~~~~~   56 (61)
                      |+++|++++.+|..|.||||+|+..++.+++++|++ .|++++..+.    +.|+|+..++
T Consensus       205 Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~  265 (285)
T d1wdya_         205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             HHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            468899999999999999999999999999999997 4888776654    3455554443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=6e-10  Score=59.59  Aligned_cols=36  Identities=17%  Similarity=0.263  Sum_probs=33.2

Q ss_pred             ccCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 035417            2 LKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATL   37 (61)
Q Consensus         2 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~   37 (61)
                      |..|++++.+|.+|+||||+|+..|+.+++++|+++
T Consensus       120 L~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         120 LAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHTTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            346899999999999999999999999999999975

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=7.1e-10  Score=61.60  Aligned_cols=42  Identities=12%  Similarity=0.150  Sum_probs=37.8

Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 035417            4 NGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQ   45 (61)
Q Consensus         4 ~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~   45 (61)
                      .+.+++.+|.+|+||||+|+..|+.+++++|+++|++++..+
T Consensus        23 ~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~   64 (229)
T d1ixva_          23 KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD   64 (229)
T ss_dssp             CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGG
T ss_pred             CCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccc
Confidence            467889999999999999999999999999999999876553

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2e-09  Score=60.02  Aligned_cols=47  Identities=15%  Similarity=0.151  Sum_probs=39.4

Q ss_pred             ccCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccccc
Q 035417            2 LKNGSAVTLQN-MDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYR   48 (61)
Q Consensus         2 l~~ga~~~~~d-~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   48 (61)
                      +..|+.++.++ .+|.||||+|+..|+.+++++|+++|++.+.++..+
T Consensus       131 ~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G  178 (221)
T d1iknd_         131 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG  178 (221)
T ss_dssp             HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTC
T ss_pred             cccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCC
Confidence            35677777654 679999999999999999999999999988876543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=98.51  E-value=6e-09  Score=62.16  Aligned_cols=41  Identities=10%  Similarity=0.097  Sum_probs=36.1

Q ss_pred             CccCCCCccccC--CCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 035417            1 MLKNGSAVTLQN--MDRKTPIDVAKLNSQHDMLKLPATLHVND   41 (61)
Q Consensus         1 Ll~~ga~~~~~d--~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~   41 (61)
                      |+++|++++..+  .+|+||||+|+.+|+.+++++|++.|++.
T Consensus       145 Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~  187 (346)
T d2ajaa1         145 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE  187 (346)
T ss_dssp             HHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGG
T ss_pred             HHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcc
Confidence            568899998876  46999999999999999999999998753