Citrus Sinensis ID: 035449

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50----
Protein Sequence
MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccEEEHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI
Flexible Loop (DISEMBL)
MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI
Low Complexity Region (SEG)
MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI
Disordered region (IsUnstruct)
*******LEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGD****
Disordered Region (DISOPRED)
******S*EKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI
Disordered Region (DISEMBL)
********EKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI
Disordered Region (DISPRO)
***SVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	54	2.2.26 [Sep-21-2011]
Q9SD80	54	Mitochondrial import rece	yes	no	1.0	1.0	0.666	3e-16

>sp|Q9SD80|TOM5_ARATH Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana GN=TOM5 PE=1 SV=3

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 46/54 (85%)

Query: 1  MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54
          M ++VVS+EK+KA WHS+VHDE+KWA+N KLLRA G+FA  + LMRSYGDLM +
Sbjct: 1  MVNNVVSIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLMGV 54


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.132    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,577,739
Number of Sequences: 539616
Number of extensions: 416242
Number of successful extensions: 1146
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1145
Number of HSP's gapped (non-prelim): 1
length of query: 54
length of database: 191,569,459
effective HSP length: 27
effective length of query: 27
effective length of database: 176,999,827
effective search space: 4778995329
effective search space used: 4778995329
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)

A component of the complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	54
224130032	54	predicted protein [Populus trichocarpa]	1.0	1.0	0.814	2e-17
255547179	54	conserved hypothetical protein [Ricinus	1.0	1.0	0.777	4e-17
225456590	54	PREDICTED: mitochondrial import receptor	1.0	1.0	0.740	2e-16
297810907	54	hypothetical protein ARALYDRAFT_908751 [	1.0	1.0	0.722	4e-16
15241504	54	mitochondrial import receptor subunit TO	1.0	1.0	0.666	1e-14
356511794	54	PREDICTED: mitochondrial import receptor	1.0	1.0	0.703	2e-14
255646929	54	unknown [Glycine max]	1.0	1.0	0.685	2e-13
449439337	69	PREDICTED: mitochondrial import receptor	0.888	0.695	0.729	4e-13
242038889	53	hypothetical protein SORBIDRAFT_01g01501	0.888	0.905	0.75	5e-13
77556203	54	hypothetical protein LOC_Os12g38650 [Ory	0.870	0.870	0.723	3e-12

>gi|224130032|ref|XP_002328637.1| predicted protein [Populus trichocarpa] gi|222838813|gb|EEE77164.1| predicted protein [Populus trichocarpa]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 49/54 (90%)

Query: 1  MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54
          MADS VS++++KA WHSQVHDEEKWALN KLLRA GLFA SIFLMR+YGDLMAI
Sbjct: 1  MADSSVSIDQLKAIWHSQVHDEEKWALNMKLLRAVGLFAGSIFLMRNYGDLMAI 54

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547179|ref|XP_002514647.1| conserved hypothetical protein [Ricinus communis] gi|223546251|gb|EEF47753.1| conserved hypothetical protein [Ricinus communis]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/54 (77%), Positives = 50/54 (92%)

Query: 1  MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54
          MADS++S+EK+KAF +SQ+HDEEKWALN KLLRA GLFA SIFLMR+YGDLMA+
Sbjct: 1  MADSMISVEKLKAFLNSQIHDEEKWALNMKLLRAAGLFAGSIFLMRNYGDLMAV 54

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456590|ref|XP_002266901.1| PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Vitis vinifera] gi|297734066|emb|CBI15313.3| unnamed protein product [Vitis vinifera]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 49/54 (90%)

Query: 1  MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54
          MAD+VVSL+ +KAFW++Q+HDEEKWALN KLLRA GLFA SIFLMR++G+ MAI
Sbjct: 1  MADTVVSLDNIKAFWNAQIHDEEKWALNMKLLRAAGLFAGSIFLMRNFGEYMAI 54

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810907|ref|XP_002873337.1| hypothetical protein ARALYDRAFT_908751 [Arabidopsis lyrata subsp. lyrata] gi|297319174|gb|EFH49596.1| hypothetical protein ARALYDRAFT_908751 [Arabidopsis lyrata subsp. lyrata]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 49/54 (90%)

Query: 1  MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54
          M ++VVSL+K+KAFWHS+VHDE+KWA+N KLLRA G+FA  +FLMRSYGDLMA+
Sbjct: 1  MVNNVVSLDKLKAFWHSEVHDEQKWAVNMKLLRALGMFAGGVFLMRSYGDLMAV 54

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241504|ref|NP_196421.1| mitochondrial import receptor subunit TOM5-like protein [Arabidopsis thaliana] gi|46577135|sp|Q9SD80.3|TOM5_ARATH RecName: Full=Mitochondrial import receptor subunit TOM5 homolog; AltName: Full=Translocase of outer membrane 5 kDa subunit homolog gi|6562318|emb|CAB62616.1| putative protein [Arabidopsis thaliana] gi|38566510|gb|AAR24145.1| At5g08040 [Arabidopsis thaliana] gi|40823543|gb|AAR92288.1| At5g08040 [Arabidopsis thaliana] gi|332003854|gb|AED91237.1| mitochondrial import receptor subunit TOM5-like protein [Arabidopsis thaliana]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 46/54 (85%)

Query: 1  MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54
          M ++VVS+EK+KA WHS+VHDE+KWA+N KLLRA G+FA  + LMRSYGDLM +
Sbjct: 1  MVNNVVSIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLMGV 54

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511794|ref|XP_003524608.1| PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Glycine max] gi|356562628|ref|XP_003549571.1| PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Glycine max]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 47/54 (87%)

Query: 1  MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54
          MADSV+S++ +K F +SQ++D+EKWA NAKLLRA GLFA SI LMR+YGDLMAI
Sbjct: 1  MADSVISIQYLKDFVNSQIYDDEKWAFNAKLLRAAGLFAGSILLMRNYGDLMAI 54

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646929|gb|ACU23934.1| unknown [Glycine max]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 46/54 (85%)

Query: 1  MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54
          MADSV+S++ +K F +SQ++D+EKWA NAKLLRA GLFA SI LMR+YG LMAI
Sbjct: 1  MADSVISIQYLKDFVNSQIYDDEKWAFNAKLLRAAGLFAGSILLMRNYGALMAI 54

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439337|ref|XP_004137442.1| PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus] gi|449486936|ref|XP_004157447.1| PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/48 (72%), Positives = 42/48 (87%)

Query: 7  SLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54
          S+E VK+F++SQV+DEEKWALN KLLRA G+FA SI LMR+YGDLM I
Sbjct: 22 SVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMTI 69

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242038889|ref|XP_002466839.1| hypothetical protein SORBIDRAFT_01g015010 [Sorghum bicolor] gi|241920693|gb|EER93837.1| hypothetical protein SORBIDRAFT_01g015010 [Sorghum bicolor]

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 43/48 (89%)

Query: 7  SLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54
          S+EK+KA W SQV+DEE+WALN KLL+A GLFA SIFLMR++GDLMAI
Sbjct: 6  SVEKLKALWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMAI 53

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77556203|gb|ABA98999.1| hypothetical protein LOC_Os12g38650 [Oryza sativa Japonica Group] gi|125537133|gb|EAY83621.1| hypothetical protein OsI_38848 [Oryza sativa Indica Group] gi|125579817|gb|EAZ20963.1| hypothetical protein OsJ_36616 [Oryza sativa Japonica Group] gi|215765186|dbj|BAG86883.1| unnamed protein product [Oryza sativa Japonica Group] gi|218187121|gb|EEC69548.1| hypothetical protein OsI_38840 [Oryza sativa Indica Group]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 41/47 (87%)

Query: 8  LEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54
          +EKVKA W SQV+DEE WA N KL++AGGLF ASIF+MR++GDLMAI
Sbjct: 8  VEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMAI 54

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	54
TAIR|locus:2142838	54	TOM5 "AT5G08040" [Arabidopsis	1.0	1.0	0.666	1.8e-16

TAIR|locus:2142838 TOM5 "AT5G08040" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 36/54 (66%), Positives = 46/54 (85%)

Query:     1 MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54
             M ++VVS+EK+KA WHS+VHDE+KWA+N KLLRA G+FA  + LMRSYGDLM +
Sbjct:     1 MVNNVVSIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLMGV 54


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.132   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       54        54   0.00091  102 3  11 22  0.38    27
                                                     29  0.38    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  501 (53 KB)
  Total size of DFA:  89 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.70u 0.23s 5.93t   Elapsed:  00:00:01
  Total cpu time:  5.70u 0.23s 5.93t   Elapsed:  00:00:01
  Start:  Thu May  9 16:21:14 2013   End:  Thu May  9 16:21:15 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SD80	TOM5_ARATH	No assigned EC number	0.6666	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_820017 hypothetical protein (55 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	54
PF15184	66	TOMM6: Mitochondrial import receptor subunit TOM6	89.02

>PF15184 TOMM6: Mitochondrial import receptor subunit TOM6 homolog

Probab=89.02  E-value=0.5  Score=28.63  Aligned_cols=40  Identities=30%  Similarity=0.478  Sum_probs=28.9

Q ss_pred             HHHHHHHHhhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035449            9 EKVKAFWHSQVH---DEEKWALNAKLLRAGGLFAASIFLMRSYGD   50 (54)
Q Consensus         9 ~~~k~f~~sqi~---deek~a~N~~llra~glFagsI~~mRnfGd   50 (54)
                      ..+-+|++.-+.   |...+.-|  |+--+|||++++-+.||--|
T Consensus        14 ~~v~dwlrg~~~fatdrndfrrn--lilnlglfaagvwlarnlsd   56 (66)
T PF15184_consen   14 AGVGDWLRGVYRFATDRNDFRRN--LILNLGLFAAGVWLARNLSD   56 (66)
T ss_pred             ccHHHHHHhhhhccccchhHHHH--HHHHhhHHhhhHHhhccccc
Confidence            456666666553   44555555  56689999999999999875

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00