Citrus Sinensis ID: 035451

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60----
Protein Sequence
MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKKSGKK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
msskqggkakplkqpkadkkeydEQDLANIQKKKEEEKALKELRAKAQqkgsfggsglkksgkk
Flexible Loop (DISEMBL)
msskqggkakplkqpkadkkeydeqDLANIQKKKEEEKALKELRakaqqkgsfggsglkksgkk
Low Complexity Region (SEG)
MSSKQGGKAKPLKQPKADKKEYDEQDLANIqkkkeeekalkelrakaqqkgsfggsglkksgkk
Disordered region (IsUnstruct)
****************************************************************
Disordered Region (DISOPRED)
****************************************************************
Disordered Region (DISEMBL)
*********************YDEQDLANIQKKKEEEKA*************************
Disordered Region (DISPRO)
*******************KEYDEQDLANIQKKKEEEKALKELRAKA*****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSKQGGKAKPLKQPKADKKEYDEQDLANxxxxxxxxxxxxxxxxxxxxxGSFGGSGLKKSGKK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	64	2.2.26 [Sep-21-2011]
Q4SUE2	64	Translation machinery-ass	N/A	no	1.0	1.0	0.562	1e-06

>sp|Q4SUE2|TMA7_TETNG Translation machinery-associated protein 7 OS=Tetraodon nigroviridis GN=tma7 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 49/64 (76%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MS ++GGK KPLK PK   K+ D+ D+A  QK+KE++KA++ L+A+A  KG  GGSG+KK
Sbjct: 1  MSGREGGKKKPLKAPKKQSKDMDDDDVAFKQKQKEDQKAMEALKARASGKGPLGGSGIKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64

Tetraodon nigroviridis (taxid: 99883)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
18394220	64	translation machinery associated protein	1.0	1.0	0.953	2e-23
247421936	64	unknown protein [Jatropha curcas] gi|300	1.0	1.0	0.906	8e-23
449517112	109	PREDICTED: translation machinery-associa	1.0	0.587	0.875	2e-22
449432408	64	PREDICTED: translation machinery-associa	1.0	1.0	0.875	6e-22
118483073	64	unknown [Populus trichocarpa] gi|1184880	1.0	1.0	0.890	3e-21
357468369	64	hypothetical protein MTR_4g012800 [Medic	1.0	1.0	0.859	4e-21
255550022	64	Coiled-coil domain-containing protein, p	1.0	1.0	0.890	9e-21
116778577	64	unknown [Picea sitchensis] gi|116779609|	1.0	1.0	0.875	1e-20
356574746	64	PREDICTED: coiled-coil domain-containing	1.0	1.0	0.843	2e-20
116788694	64	unknown [Picea sitchensis]	1.0	1.0	0.859	3e-20

>gi|18394220|ref|NP_563969.1| translation machinery associated protein TMA7 [Arabidopsis thaliana] gi|297849952|ref|XP_002892857.1| hypothetical protein ARALYDRAFT_471721 [Arabidopsis lyrata subsp. lyrata] gi|5103825|gb|AAD39655.1|AC007591_20 ESTs gb|AA650895, gb|AA720043 and gb|R29777 come from this gene [Arabidopsis thaliana] gi|12484215|gb|AAG54006.1|AF336925_1 unknown protein [Arabidopsis thaliana] gi|15028107|gb|AAK76677.1| unknown protein [Arabidopsis thaliana] gi|17065256|gb|AAL32782.1| Unknown protein [Arabidopsis thaliana] gi|20260078|gb|AAM13386.1| unknown protein [Arabidopsis thaliana] gi|21592316|gb|AAM64267.1| unknown [Arabidopsis thaliana] gi|297338699|gb|EFH69116.1| hypothetical protein ARALYDRAFT_471721 [Arabidopsis lyrata subsp. lyrata] gi|332191176|gb|AEE29297.1| translation machinery associated protein TMA7 [Arabidopsis thaliana]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/64 (95%), Positives = 62/64 (96%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MSSKQGGKAKPLKQPKADKKEYDE DLANIQKKK+EEKALKELRAKA QKGSFGGSGLKK
Sbjct: 1  MSSKQGGKAKPLKQPKADKKEYDETDLANIQKKKDEEKALKELRAKASQKGSFGGSGLKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|247421936|gb|ACS96448.1| unknown protein [Jatropha curcas] gi|300078541|gb|ADJ67178.1| hypothetical protein [Jatropha curcas] gi|300078545|gb|ADJ67180.1| F9L1.21 protein [Jatropha curcas]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 62/64 (96%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MSSKQGGKAKPLKQPK+DKKEYDE DLANIQKKKEEEKAL+ELRAKA QKG+FGG+GLKK
Sbjct: 1  MSSKQGGKAKPLKQPKSDKKEYDENDLANIQKKKEEEKALRELRAKASQKGAFGGTGLKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517112|ref|XP_004165590.1| PREDICTED: translation machinery-associated protein 7-like [Cucumis sativus]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/64 (87%), Positives = 62/64 (96%)

Query: 1   MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
           MSSKQGGKAKPLKQPK DKK+YDE D+AN+QKKK+EEKALKELRAKAQQKG+FGG+GLKK
Sbjct: 46  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 105

Query: 61  SGKK 64
           SGKK
Sbjct: 106 SGKK 109

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432408|ref|XP_004133991.1| PREDICTED: translation machinery-associated protein 7-like isoform 1 [Cucumis sativus] gi|449432410|ref|XP_004133992.1| PREDICTED: translation machinery-associated protein 7-like isoform 2 [Cucumis sativus]

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/64 (87%), Positives = 62/64 (96%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MSSKQGGKAKPLKQPK DKK+YDE D+AN+QKKK+EEKALKELRAKAQQKG+FGG+GLKK
Sbjct: 1  MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKALKELRAKAQQKGTFGGAGLKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483073|gb|ABK93446.1| unknown [Populus trichocarpa] gi|118488078|gb|ABK95859.1| unknown [Populus trichocarpa]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/64 (89%), Positives = 61/64 (95%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MSSK GGKAKPLK PK++KK+YDE DLANIQKKK+EEKALKELRAKAQQKGSFGGSGLKK
Sbjct: 1  MSSKLGGKAKPLKAPKSEKKDYDETDLANIQKKKDEEKALKELRAKAQQKGSFGGSGLKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468369|ref|XP_003604469.1| hypothetical protein MTR_4g012800 [Medicago truncatula] gi|355505524|gb|AES86666.1| hypothetical protein MTR_4g012800 [Medicago truncatula]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/64 (85%), Positives = 62/64 (96%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MS+KQGGKAKPLK+PK+DKK+YDE D+ANIQKKK+EEKALKEL+AKA QKGSFGGSGLKK
Sbjct: 1  MSTKQGGKAKPLKKPKSDKKDYDEVDMANIQKKKDEEKALKELKAKASQKGSFGGSGLKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550022|ref|XP_002516062.1| Coiled-coil domain-containing protein, putative [Ricinus communis] gi|223544967|gb|EEF46482.1| Coiled-coil domain-containing protein, putative [Ricinus communis]

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/64 (89%), Positives = 60/64 (93%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MSSKQGGKAKPLKQPKA KKEYDE DLANIQKKK+EEKALKEL+AKA QKG+ GGSGLKK
Sbjct: 1  MSSKQGGKAKPLKQPKAGKKEYDETDLANIQKKKDEEKALKELKAKAAQKGALGGSGLKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116778577|gb|ABK20919.1| unknown [Picea sitchensis] gi|116779609|gb|ABK21363.1| unknown [Picea sitchensis] gi|116779636|gb|ABK21375.1| unknown [Picea sitchensis] gi|116782509|gb|ABK22534.1| unknown [Picea sitchensis] gi|116782607|gb|ABK22571.1| unknown [Picea sitchensis] gi|116782935|gb|ABK22730.1| unknown [Picea sitchensis] gi|116788634|gb|ABK24948.1| unknown [Picea sitchensis] gi|116789627|gb|ABK25319.1| unknown [Picea sitchensis] gi|116789683|gb|ABK25341.1| unknown [Picea sitchensis] gi|116790386|gb|ABK25594.1| unknown [Picea sitchensis] gi|148907361|gb|ABR16815.1| unknown [Picea sitchensis] gi|148908639|gb|ABR17428.1| unknown [Picea sitchensis] gi|148908786|gb|ABR17499.1| unknown [Picea sitchensis] gi|148910212|gb|ABR18187.1| unknown [Picea sitchensis] gi|148910514|gb|ABR18332.1| unknown [Picea sitchensis] gi|148910755|gb|ABR18444.1| unknown [Picea sitchensis] gi|224285671|gb|ACN40551.1| unknown [Picea sitchensis]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/64 (87%), Positives = 60/64 (93%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MSSKQGGKAKPLKQPK DK EYDE DLA+IQKKK+EEKALKEL+AKA QKGSFGG+GLKK
Sbjct: 1  MSSKQGGKAKPLKQPKKDKAEYDEADLAHIQKKKDEEKALKELKAKASQKGSFGGTGLKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574746|ref|XP_003555506.1| PREDICTED: coiled-coil domain-containing protein 72-like [Glycine max]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/64 (84%), Positives = 60/64 (93%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MS+KQGGKAKPLK+PK+DKK+YDE D+ANIQK KEEEKALKEL+AKAQ KGSFGG GLKK
Sbjct: 1  MSTKQGGKAKPLKKPKSDKKDYDEVDMANIQKNKEEEKALKELKAKAQHKGSFGGFGLKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116788694|gb|ABK24966.1| unknown [Picea sitchensis]

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/64 (85%), Positives = 59/64 (92%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MSSKQGGKAKPLKQPK DK EYDE DLA+IQKKK+EEKALKEL+AKA QKGSFGG+G KK
Sbjct: 1  MSSKQGGKAKPLKQPKKDKAEYDEADLAHIQKKKDEEKALKELKAKASQKGSFGGTGFKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
TAIR|locus:2037768	64	AT1G15270 "AT1G15270" [Arabido	0.468	0.468	0.966	1.5e-10
TAIR|locus:2093412	64	AT3G16040 "AT3G16040" [Arabido	0.421	0.421	0.814	2.3e-07
FB|FBgn0026879	64	CG13364 [Drosophila melanogast	0.437	0.437	0.607	6.3e-05
ZFIN|ZDB-GENE-061027-176	64	tma7 "translational machinery	0.437	0.437	0.571	0.00035
SGD|S000007246	64	TMA7 "Protein of unknown that	0.437	0.437	0.571	0.00045
ASPGD|ASPL0000076491	68	AN4937 [Emericella nidulans (t	0.421	0.397	0.555	0.00093

TAIR|locus:2037768 AT1G15270 "AT1G15270" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 29/30 (96%), Positives = 29/30 (96%)

Query:     1 MSSKQGGKAKPLKQPKADKKEYDEQDLANI 30
             MSSKQGGKAKPLKQPKADKKEYDE DLANI
Sbjct:     1 MSSKQGGKAKPLKQPKADKKEYDETDLANI 30

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2093412 AT3G16040 "AT3G16040" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 22/27 (81%), Positives = 24/27 (88%)

Query:     1 MSSKQGGKAKPLKQPKADKKEYDEQDL 27
             MSSKQGGK KPLKQPK+ KKEYDE D+
Sbjct:     1 MSSKQGGKLKPLKQPKSGKKEYDEHDM 27

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0026879 CG13364 [Drosophila melanogaster (taxid:7227)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 17/28 (60%), Positives = 21/28 (75%)

Query:     1 MSSKQGGKAKPLKQPKADKKEYDEQDLA 28
             MS ++GGK KPLK PK D K+ DE D+A
Sbjct:     1 MSGREGGKKKPLKAPKKDSKDLDEDDMA 28

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-061027-176 tma7 "translational machinery associated 7 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query:     1 MSSKQGGKAKPLKQPKADKKEYDEQDLA 28
             MS ++GGK KPLK PK   KE DE ++A
Sbjct:     1 MSGREGGKKKPLKAPKKQSKEMDEDEMA 28

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

SGD|S000007246 TMA7 "Protein of unknown that associates with ribosomes" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query:     1 MSSKQGGKAKPLKQPKADKKEYDEQDLA 28
             MSS+QGGK KPLKQ K  +++ D +D+A
Sbjct:     1 MSSRQGGKMKPLKQKKKQQQDLDPEDIA 28

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006412 "translation" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IMP

ASPGD|ASPL0000076491 AN4937 [Emericella nidulans (taxid:162425)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query:     2 SSKQGGKAKPLKQPKADKKEYDEQDLA 28
             +S++GGK KPLK  K +K+E D+ DLA
Sbjct:     4 ASREGGKVKPLKAAKKEKRELDDDDLA 30


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.299   0.122   0.322    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       64        30   0.00091  102 3  11 24  0.39    24
                                                     29  0.44    22


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  257 (28 KB)
  Total size of DFA:  42 KB (2055 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.04u 0.12s 8.16t   Elapsed:  00:00:01
  Total cpu time:  8.04u 0.12s 8.16t   Elapsed:  00:00:01
  Start:  Thu May  9 16:23:23 2013   End:  Thu May  9 16:23:24 2013

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4SUE2	TMA7_TETNG	No assigned EC number	0.5625	1.0	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.1__1675__AT1G15270.1 annotation not avaliable (64 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	64
PF09072	63	TMA7: Translation machinery associated TMA7; Inter	100.0
KOG4766	64	consensus Uncharacterized conserved protein [Funct	100.0

>PF09072 TMA7: Translation machinery associated TMA7; InterPro: IPR015157 TMA7 plays a role in protein translation

Probab=100.00  E-value=3.7e-36  Score=183.89  Aligned_cols=63  Identities=63%  Similarity=0.873  Sum_probs=62.3

Q ss_pred             CCCCCCCcCCCCCcchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCCC
Q 035451            2 SSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKKSGKK   64 (64)
Q Consensus         2 sgr~GGKkKPLK~pKK~~ke~DEeD~AfkqKqkee~k~~kel~~ka~~kgpl~~~giKKSgKK   64 (64)
                      |||+|||+|||||||++++||||||+||+++|+|++++++||+++|.++|||++||||+||||
T Consensus         1 SgreGGK~KPLK~pKK~~ke~DEeD~AfKqKqkee~k~lke~~~ka~~kgpl~~ggiKKSgKK   63 (63)
T PF09072_consen    1 SGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKALKELKAKAKGKGPLATGGIKKSGKK   63 (63)
T ss_pred             CCccccccCcCcCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCccccCCC
Confidence            899999999999999999999999999999999999999999999999999999999999996

Deletions of the TMA7 gene results in altered protein synthesis rates [].

>KOG4766 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2e-34  Score=176.88  Aligned_cols=64  Identities=69%  Similarity=0.937  Sum_probs=63.3

Q ss_pred             CCCCCCCCcCCCCCcchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCCC
Q 035451            1 MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKKSGKK   64 (64)
Q Consensus         1 Msgr~GGKkKPLK~pKK~~ke~DEeD~AfkqKqkee~k~~kel~~ka~~kgpl~~~giKKSgKK   64 (64)
                      ||||||||+|||||||++++||||||+||+|+|++|+++++||+++|.++|||++|||++||++
T Consensus         1 MsgrqGGK~KPLKqpKk~~ke~deed~a~kqkqK~e~ka~kel~Aka~~kg~~~g~Gikksgkk   64 (64)
T KOG4766|consen    1 MSGRQGGKKKPLKQPKKQAKELDEEDMAFKQKQKEEAKALKELKAKASQKGPLVGGGIKKSGKK   64 (64)
T ss_pred             CCcccccccCccccchhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999986

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	64
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 36.0 bits (82), Expect = 3e-04
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 23/67 (34%)

Query: 13  KQPKADKKEYDEQ--DLAN------------IQKKKEEEKALKELRAKAQQKGSF----G 54
           +QP    + Y EQ   L N            +Q   +  +AL ELR     K        
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR---PAKNVLIDGVL 159

Query: 55  GSGLKKS 61
           GSG  K+
Sbjct: 160 GSG--KT 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00