Citrus Sinensis ID: 035465

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60
Protein Sequence
MAGLAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNKQDS
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEcccEEEEEEEEEEEEEccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
maglagfntlaprtknlvvAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNKQDS
Flexible Loop (DISEMBL)
maglagfntlaprtknlvvAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFeeqknkqds
Low Complexity Region (SEG)
MAGLAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNKQDS
Disordered region (IsUnstruct)
*****GFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQA**************
Disordered Region (DISOPRED)
*********LAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAI************
Disordered Region (DISEMBL)
MAGLAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKF*********
Disordered Region (DISPRO)
******FNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKN****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGLAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNKQDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
224087423	62	predicted protein [Populus trichocarpa]	0.916	0.887	0.818	9e-20
255590463	60	conserved hypothetical protein [Ricinus	1.0	1.0	0.75	3e-19
195605814	67	hypothetical protein [Zea mays] gi|19561	0.933	0.835	0.807	1e-18
357135085	70	PREDICTED: uncharacterized protein LOC10	0.916	0.785	0.818	3e-18
242088537	65	hypothetical protein SORBIDRAFT_09g02605	0.9	0.830	0.814	3e-18
356527480	68	PREDICTED: uncharacterized protein LOC10	0.966	0.852	0.775	3e-18
388503612	68	unknown [Lotus japonicus]	0.983	0.867	0.745	4e-18
356569074	68	PREDICTED: uncharacterized protein LOC10	0.983	0.867	0.745	6e-18
125537376	160	hypothetical protein OsI_39086 [Oryza sa	0.9	0.337	0.796	7e-18
77556579	173	expressed protein [Oryza sativa Japonica	0.9	0.312	0.796	1e-17

>gi|224087423|ref|XP_002335142.1| predicted protein [Populus trichocarpa] gi|222832945|gb|EEE71422.1| predicted protein [Populus trichocarpa]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 54/55 (98%)

Query: 6  GFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNKQDS 60
          GF++LAP+TKNLVVAGGL+AFVFGVY+YTMRAVGGTDELQ AIDKFE+QK+K++S
Sbjct: 1  GFSSLAPKTKNLVVAGGLSAFVFGVYFYTMRAVGGTDELQTAIDKFEQQKSKEES 55

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255590463|ref|XP_002535277.1| conserved hypothetical protein [Ricinus communis] gi|223523580|gb|EEF27106.1| conserved hypothetical protein [Ricinus communis]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 54/60 (90%)

Query: 1  MAGLAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNKQDS 60
          M G +G+  LAP+TKNL+VAGGLTAFVFGVY+YTMRAVGGTDELQ AIDK+E QK+KQ++
Sbjct: 1  MTGSSGYRNLAPKTKNLIVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKYEGQKSKQEA 60

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195605814|gb|ACG24737.1| hypothetical protein [Zea mays] gi|195619322|gb|ACG31491.1| hypothetical protein [Zea mays] gi|413949874|gb|AFW82523.1| hypothetical protein ZEAMMB73_957297 [Zea mays] gi|413949875|gb|AFW82524.1| hypothetical protein ZEAMMB73_957297 [Zea mays] gi|413949878|gb|AFW82527.1| hypothetical protein ZEAMMB73_368802 [Zea mays]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/57 (80%), Positives = 52/57 (91%), Gaps = 1/57 (1%)

Query: 4  LAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNKQDS 60
          +AGF +LAP+T+NLVVAGGL+AFV GVYYYTMRAVGGTDELQ AIDKFEE K KQD+
Sbjct: 1  MAGFRSLAPKTRNLVVAGGLSAFVLGVYYYTMRAVGGTDELQVAIDKFEETK-KQDA 56

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357135085|ref|XP_003569142.1| PREDICTED: uncharacterized protein LOC100838997 [Brachypodium distachyon]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 48/55 (87%)

Query: 4  LAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNKQ 58
          +AGF  LAP+TKNLVVAGGLT FVFGVYYYTMRAVGGTDELQ AIDKFE+ K K 
Sbjct: 1  MAGFRALAPKTKNLVVAGGLTGFVFGVYYYTMRAVGGTDELQVAIDKFEDLKKKD 55

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242088537|ref|XP_002440101.1| hypothetical protein SORBIDRAFT_09g026050 [Sorghum bicolor] gi|241945386|gb|EES18531.1| hypothetical protein SORBIDRAFT_09g026050 [Sorghum bicolor]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 49/54 (90%)

Query: 4  LAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNK 57
          +AGF +LAP+T+NLVVAGGL+AFV GVYYYTMRAVGGTDELQ AIDKFEE K K
Sbjct: 1  MAGFRSLAPKTRNLVVAGGLSAFVLGVYYYTMRAVGGTDELQVAIDKFEEMKKK 54

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527480|ref|XP_003532337.1| PREDICTED: uncharacterized protein LOC100811894 [Glycine max]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/58 (77%), Positives = 49/58 (84%)

Query: 1  MAGLAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNKQ 58
          MAGL G+ +L P+ KNLVVAGGLTAFVFG Y+YTMRAVGGTDELQ AIDKFE  KNK 
Sbjct: 1  MAGLLGYRSLPPKAKNLVVAGGLTAFVFGAYFYTMRAVGGTDELQVAIDKFEADKNKN 58

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503612|gb|AFK39872.1| unknown [Lotus japonicus]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 50/59 (84%)

Query: 1  MAGLAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNKQD 59
          MAG+ GF +L P+ KN VVAGGLTAFVFG Y+YTMRAVGGTDELQ AIDKFE  K+KQ+
Sbjct: 1  MAGVLGFASLPPKAKNFVVAGGLTAFVFGTYFYTMRAVGGTDELQVAIDKFEADKSKQE 59

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569074|ref|XP_003552731.1| PREDICTED: uncharacterized protein LOC100500217 [Glycine max] gi|255629736|gb|ACU15217.1| unknown [Glycine max]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 50/59 (84%)

Query: 1  MAGLAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNKQD 59
          MAGL G+ +L P+ KNLVVAGGLTAFVFG Y+YTMRAVGGTDELQ AIDKFE  K+K +
Sbjct: 1  MAGLLGYRSLPPKAKNLVVAGGLTAFVFGAYFYTMRAVGGTDELQVAIDKFEADKSKNE 59

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125537376|gb|EAY83864.1| hypothetical protein OsI_39086 [Oryza sativa Indica Group]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 48/54 (88%)

Query: 4   LAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNK 57
           +AGF +LAP+TKN+VVAGGL+AFV GVYYYTMRAVGGTDELQ AIDKFE  K K
Sbjct: 97  MAGFGSLAPKTKNIVVAGGLSAFVLGVYYYTMRAVGGTDELQVAIDKFEGMKKK 150

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77556579|gb|ABA99375.1| expressed protein [Oryza sativa Japonica Group]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 48/54 (88%)

Query: 4   LAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNK 57
           +AGF +LAP+TKN+VVAGGL+AFV GVYYYTMRAVGGTDELQ AIDKFE  K K
Sbjct: 110 MAGFGSLAPKTKNIVVAGGLSAFVLGVYYYTMRAVGGTDELQVAIDKFEGMKKK 163

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
TAIR|locus:2043914	67	AT2G43780 "AT2G43780" [Arabido	0.916	0.820	0.8	1.4e-18

TAIR|locus:2043914 AT2G43780 "AT2G43780" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 44/55 (80%), Positives = 47/55 (85%)

Query:     1 MAGLAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQK 55
             MAG  GF+ L P+ KN VVAGGLTAFVFGVY+YTMRAVGGTDELQ AIDKFE QK
Sbjct:     1 MAGFPGFSYLGPKGKNTVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEGQK 55


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       60        60   0.00091  102 3  11 22  0.37    28
                                                     29  0.37    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  375 (40 KB)
  Total size of DFA:  63 KB (2060 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.55u 0.14s 6.69t   Elapsed:  00:00:01
  Total cpu time:  6.55u 0.14s 6.69t   Elapsed:  00:00:01
  Start:  Thu May  9 16:39:20 2013   End:  Thu May  9 16:39:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.2638.2.1 hypothetical protein (62 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	60
PF09813	100	Coiled-coil_56: Coiled-coil domain-containing prot	99.71
KOG4782	108	consensus Predicted membrane protein [Function unk	99.06

>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function

Probab=99.71  E-value=2.8e-18  Score=111.49  Aligned_cols=44  Identities=36%  Similarity=0.570  Sum_probs=39.4

Q ss_pred             CccchhhHHHHHHHHHHhhheeeeeeeeeccccchhhhhhhhhhhhhc
Q 035465           10 LAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNK   57 (60)
Q Consensus        10 lp~~~kN~~tg~~L~afv~GIY~YTi~AV~Qddf~dv~Id~fE~~k~~   57 (60)
                      .|+|.||++||++|++||+|||+|||++|+||+|    +|++|++.+.
T Consensus        45 ~~~R~rN~~Tgl~L~~~v~gIY~YTi~sV~Qe~F----~D~~eeeak~   88 (100)
T PF09813_consen   45 QRRRRRNLLTGLALGAFVVGIYAYTIYSVKQEDF----LDELEEEAKA   88 (100)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhheeeeechhhh----HHHhhhHHHH
Confidence            3678999999999999999999999999999999    5577887664

>KOG4782 consensus Predicted membrane protein [Function unknown]

Probab=99.06  E-value=4.3e-11  Score=78.85  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=30.5

Q ss_pred             hhhHHHHHHHHHHhhheeeeeeeeeccccchhh
Q 035465           14 TKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQA   46 (60)
Q Consensus        14 ~kN~~tg~~L~afv~GIY~YTi~AV~Qddf~dv   46 (60)
                      -||.+++++|+++|+|||+||+++|+|+.|+|.
T Consensus        57 ykN~is~a~i~alViaIY~YTfYSikQErFLdE   89 (108)
T KOG4782|consen   57 YKNHISFAGIGALVIAIYGYTFYSIKQERFLDE   89 (108)
T ss_pred             hhhhhhhHHHHHHHHHhhhheeeehhHHHHHHH
Confidence            569999999999999999999999999999653

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00