Citrus Sinensis ID: 035500
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 606 | 2.2.26 [Sep-21-2011] | |||||||
| Q92466 | 427 | DNA damage-binding protei | yes | no | 0.298 | 0.423 | 0.233 | 3e-05 | |
| Q6PE01 | 358 | U5 small nuclear ribonucl | yes | no | 0.184 | 0.312 | 0.244 | 0.0005 | |
| Q2HJH6 | 358 | U5 small nuclear ribonucl | yes | no | 0.184 | 0.312 | 0.236 | 0.0006 | |
| Q0VBY8 | 426 | DNA damage-binding protei | no | no | 0.176 | 0.251 | 0.25 | 0.0007 |
| >sp|Q92466|DDB2_HUMAN DNA damage-binding protein 2 OS=Homo sapiens GN=DDB2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 90/227 (39%), Gaps = 46/227 (20%)
Query: 406 RSLSAAKLGSSAWP---------LLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFG 456
R+L KLG ++WP LH + S+ + K R ++P++PS +A G
Sbjct: 71 RTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVG 130
Query: 457 TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516
+ G++++ N + +I IG S+ GL + ++ A S G RL D
Sbjct: 131 SKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 190
Query: 517 PKV-------------ADARGNSSVATYYD---------------------FEQLTSVHV 542
+V D +S + D +++T V +
Sbjct: 191 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVAL 250
Query: 543 NSTDDQFLASG-YSKNVALYDINT--EKPLQLFTDMHREPINVAKFS 586
N D FLA+ + V ++D+ K L++ HR P+N A FS
Sbjct: 251 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 297
|
Required for DNA repair. Binds to DDB1 to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair. The UV-DDB complex preferentially binds to cyclobutane pyrimidine dimers (CPD), 6-4 photoproducts (6-4 PP), apurinic sites and short mismatches. Also appears to function as the substrate recognition module for the DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex DDB1-CUL4-ROC1 (also known as CUL4-DDB-ROC1 and CUL4-DDB-RBX1). The DDB1-CUL4-ROC1 complex may ubiquitinate histone H2A, histone H3 and histone H4 at sites of UV-induced DNA damage. The ubiquitination of histones may facilitate their removal from the nucleosome and promote subsequent DNA repair. The DDB1-CUL4-ROC1 complex also ubiquitinates XPC, which may enhance DNA-binding by XPC and promote NER. Isoform D1 and isoform D2 inhibit UV-damaged DNA repair. Homo sapiens (taxid: 9606) |
| >sp|Q6PE01|SNR40_MOUSE U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCW-LKKYPSKLVA 500
+ YN ++ S++ + D V V + E G + + G S + C+ ++ P +
Sbjct: 115 ELHYN-TDGSMLFSASTDKTVAVWDSETGE---RVKRLKGHTSFVNSCYPARRGPQLVCT 170
Query: 501 GSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVAL 560
GSD G V+L+D+ R ++V T+ + Q+ +V N T DQ ++ G ++ +
Sbjct: 171 GSDDGTVKLWDI----------RKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKV 220
Query: 561 YDINTEK 567
+D+ K
Sbjct: 221 WDLRQNK 227
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Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs. Mus musculus (taxid: 10090) |
| >sp|Q2HJH6|SNR40_BOVIN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCW-LKKYPSKLVA 500
+ YN ++ S++ + D V V + E G + + G S + C+ ++ P +
Sbjct: 115 ELHYN-TDGSMLFSASTDKTVAVWDSETGE---RVKRLKGHTSFVNSCYPARRGPQLVCT 170
Query: 501 GSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVAL 560
GSD G V+L+D+ R +++ T+ + Q+ +V N T DQ ++ G ++ +
Sbjct: 171 GSDDGTVKLWDI----------RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKV 220
Query: 561 YDINTEK 567
+D+ K
Sbjct: 221 WDLRQNK 227
|
Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs. Bos taurus (taxid: 9913) |
| >sp|Q0VBY8|DDB2_BOVIN DNA damage-binding protein 2 OS=Bos taurus GN=DDB2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 406 RSLSAAKLGSSAWP---------LLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFG 456
R+L KLG++AWP L+ ++S+ K R ++P++PS +A G
Sbjct: 70 RALHQHKLGTAAWPSLQQGLQQSFLNSLASYRIFQKAAPFDRRATSLAWHPTHPSTLAVG 129
Query: 457 TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512
+ G++++ N + +I IG S+ G+ + ++ S G RL D
Sbjct: 130 SKGGDILLWNFGIKDKPTFIKGIGAGGSITGMKFNPLNTNQFFTSSMEGTTRLQDF 185
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Required for DNA repair. Binds to DDB1 to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair. The UV-DDB complex preferentially binds to cyclobutane pyrimidine dimers (CPD), 6-4 photoproducts (6-4 PP), apurinic sites and short mismatches. Also appears to function as the substrate recognition module for the DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex DDB1-CUL4-ROC1 (also known as CUL4-DDB-ROC1 and CUL4-DDB-RBX1). The DDB1-CUL4-ROC1 complex may ubiquitinate histone H2A, histone H3 and histone H4 at sites of UV-induced DNA damage. The ubiquitination of histones may facilitate their removal from the nucleosome and promote subsequent DNA repair. The DDB1-CUL4-ROC1 complex also ubiquitinates XPC, which may enhance DNA-binding by XPC and promote NER. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 606 | ||||||
| 224115112 | 768 | predicted protein [Populus trichocarpa] | 0.948 | 0.748 | 0.574 | 0.0 | |
| 359480634 | 804 | PREDICTED: uncharacterized protein LOC10 | 0.957 | 0.721 | 0.563 | 0.0 | |
| 296087358 | 742 | unnamed protein product [Vitis vinifera] | 0.914 | 0.746 | 0.560 | 0.0 | |
| 296083092 | 814 | unnamed protein product [Vitis vinifera] | 0.953 | 0.710 | 0.520 | 1e-176 | |
| 359475456 | 794 | PREDICTED: uncharacterized protein LOC10 | 0.962 | 0.734 | 0.512 | 1e-175 | |
| 147861826 | 806 | hypothetical protein VITISV_026521 [Viti | 0.962 | 0.723 | 0.499 | 1e-174 | |
| 356534295 | 804 | PREDICTED: uncharacterized protein LOC10 | 0.963 | 0.726 | 0.504 | 1e-164 | |
| 356574293 | 787 | PREDICTED: uncharacterized protein LOC10 | 0.948 | 0.730 | 0.504 | 1e-163 | |
| 224105657 | 783 | predicted protein [Populus trichocarpa] | 0.947 | 0.733 | 0.499 | 1e-161 | |
| 224060678 | 817 | predicted protein [Populus trichocarpa] | 0.966 | 0.717 | 0.482 | 1e-160 |
| >gi|224115112|ref|XP_002332240.1| predicted protein [Populus trichocarpa] gi|222831853|gb|EEE70330.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/590 (57%), Positives = 434/590 (73%), Gaps = 15/590 (2%)
Query: 11 RYLDSCRRRETQPNSSVLSWFSEAKIQNPNNEKCSILVYLDQLKNADIYPLIDVFTEMDS 70
RYLDSC++ E PNS+VLSWF +A+IQ KCSI +L+QL NADIYPLIDVF +DS
Sbjct: 1 RYLDSCKKHEVLPNSAVLSWFYKAEIQKSELGKCSIKFFLNQLCNADIYPLIDVFLAIDS 60
Query: 71 FDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGSSCHVL 130
D++AVDIL + PC EEY+M L+ I+ KLRVVDL +++ + L +LC G +CH+L
Sbjct: 61 SDVDAVDILHESPCNFNEEYVMPLLQTINLKLRVVDLHDMSPEENFLQNLCHHGLACHIL 120
Query: 131 ILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTT 190
+R+T+I+KLNM G FM L+TL+LDFC+S+ SL +DCFSCMP LM LSMCETR+ NLWTT
Sbjct: 121 NMRSTHIQKLNMAGTFMQLHTLNLDFCTSIGSLDKDCFSCMPSLMRLSMCETRVANLWTT 180
Query: 191 TAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQ------ASGADDRVKDNEDQIVCK 244
TAA+SKLP L+ELRFQ CLCCKDTGPC AS K + S + +E +
Sbjct: 181 TAALSKLPSLVELRFQNCLCCKDTGPCPASFGDKARIAFEKLGSAPLNMCLSSETSSI-- 238
Query: 245 KFRDADEVELPKYLRTMNLMELS-SCLSPNLNGHAEMLDEVNDSNEFPGGAHKQDLMDAN 303
RDA +L+ L+ S L +G + L + + E +
Sbjct: 239 SIRDATFQGFHAKENCGDLLSLTGSALIKEGSGKFDNLSHIREV-EISSCLQRNG---RP 294
Query: 304 VKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVFARYFEHLPY 363
LK YISHHPSPICFEKHYREYM+A LP+LEVLDN I ++DRE+ +++F++Y+E+LPY
Sbjct: 295 TSLKNYISHHPSPICFEKHYREYMVALLPRLEVLDNFSITKMDREMGRTIFSKYYEYLPY 354
Query: 364 KRKHKESVVSLLQKREMGTSG-NYQNSSKPKQP-NIHRTQHFFSRSLSAAKLGSSAWPLL 421
KR++K+SVV++LQKREMGT+G + N SK KQ + ++ FSRSL+AAKLGS+AWPLL
Sbjct: 355 KRQNKQSVVTVLQKREMGTTGASCPNFSKFKQSCHYGKSPCHFSRSLTAAKLGSAAWPLL 414
Query: 422 HPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGG 481
HP+ +FSHIYKEG+KR+R RQFEY+PS+ LM +GTLDGEV+VINHE+G + Y+PS
Sbjct: 415 HPLHTFSHIYKEGSKRLRARQFEYHPSDSRLMVYGTLDGEVVVINHESGKLVGYVPSANN 474
Query: 482 TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVH 541
NSVLGLCWLKKYPSKL+AGSD+GC++LFD++HIPP V+D ++ V T+ DF+QLTSVH
Sbjct: 475 MNSVLGLCWLKKYPSKLLAGSDNGCLKLFDISHIPPIVSDVNCSAGVVTFDDFDQLTSVH 534
Query: 542 VNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591
VNS DDQFLASGYSK+VALYDI + K L LFT+MHREPINV KF+HHSP
Sbjct: 535 VNSGDDQFLASGYSKDVALYDIFSGKRLHLFTNMHREPINVVKFAHHSPF 584
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480634|ref|XP_002279255.2| PREDICTED: uncharacterized protein LOC100247452 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/600 (56%), Positives = 442/600 (73%), Gaps = 20/600 (3%)
Query: 1 MAMDMSTLEARYLDSCRRRETQPNSSVLSWFSEAKIQNPNNEKCSILVYLDQLKNADIYP 60
MA+D+STL+ARYLDSC+R PNS+VLSWF +AKIQ ++EKCSI+V LD L+ AD P
Sbjct: 29 MAIDISTLDARYLDSCKRHGVVPNSAVLSWFYKAKIQKSSHEKCSIVVLLDHLRAADFSP 88
Query: 61 LIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDL 120
LIDVF E+DS +I+AVDIL + P L EEY++S++ I+ KLR+V+L +++ D DL
Sbjct: 89 LIDVFLEIDSSNIDAVDILHESPIILTEEYVLSMIRTINLKLRLVELRDVSFGKDFFRDL 148
Query: 121 CQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180
G +C VL LR+++ +KLNMVG F+ L+TL+LD+C+ L SL +DCF+CMP LM LSMC
Sbjct: 149 SHDGLACQVLKLRSSHFQKLNMVGGFLQLHTLNLDYCTHLTSLQKDCFACMPNLMRLSMC 208
Query: 181 ETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQ 240
ETR+ NLWTT+A +SK+P L+ELRFQ C CC++TGPC S S DD + ++
Sbjct: 209 ETRVANLWTTSAVLSKIPSLVELRFQTCPCCENTGPCPMS-------SNTDDSLTIDDVP 261
Query: 241 IVCKKFRDADEVELPKYLRTMNLMELSSCLS-PNLNGHAEMLDEVNDS-------NEFPG 292
+ + + ++ + L+ + L+ELSS + P H + EV+ S N
Sbjct: 262 SMDECLSNDCQITVSSELQRIGLLELSSDNALPVSKKHGHLQKEVSFSEMHVQHKNGSLL 321
Query: 293 GAHKQDLMDANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKS 352
DL DA + LK ISHHPSPICFEKHYR+YMIASLP L+VLDNL I ++DRE AK+
Sbjct: 322 SGLNWDLTDAAIALKYCISHHPSPICFEKHYRDYMIASLPLLQVLDNLLIRKMDREKAKT 381
Query: 353 VFARYFEHLPYKRKHKESVVSLLQKREMGTSGNYQNSS-KPKQPNIH-RTQHFFSRSLSA 410
+F++Y+E+LPYKR+ ESVV++LQKREMG+S + S KPKQP + ++ +FFSRSL A
Sbjct: 382 IFSKYYEYLPYKRQ-PESVVTVLQKREMGSSTIHDRKSLKPKQPTSYKKSPYFFSRSLCA 440
Query: 411 AKLGSSAWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENG 470
KLG AWPLL+PVS+ S+ K+ +K++RPRQFEY+PSN SLM FGTLDGE++V NHE+G
Sbjct: 441 TKLG--AWPLLYPVSNISYTSKQESKQLRPRQFEYHPSNSSLMVFGTLDGEIVVFNHESG 498
Query: 471 NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVAT 530
N+ Y PSIG NSVLGLCWLKK PSKL+AGSD+G + L+D+NH+PP +ADA +S + T
Sbjct: 499 NIVGYSPSIGAANSVLGLCWLKKCPSKLLAGSDNGSLNLYDINHMPPNIADAYCSSGIVT 558
Query: 531 YYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590
Y FEQLTSVHVNSTDD FL SGYSK+VALYDI + K L+LF +MHREPINVAKFS+HSP
Sbjct: 559 YDRFEQLTSVHVNSTDDWFLVSGYSKHVALYDIGSGKRLKLFNNMHREPINVAKFSNHSP 618
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087358|emb|CBI33732.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/592 (56%), Positives = 427/592 (72%), Gaps = 38/592 (6%)
Query: 1 MAMDMSTLEARYLDSCRRRETQPNSSVLSWFSEAKIQNPNNEKCSILVYLDQLKNADIYP 60
MA+D+STL+ARYLDSC+R PNS+VLSWF +AKIQ ++EKCSI+V LD L+ AD P
Sbjct: 1 MAIDISTLDARYLDSCKRHGVVPNSAVLSWFYKAKIQKSSHEKCSIVVLLDHLRAADFSP 60
Query: 61 LIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDL 120
LIDVF E+DS +I+AVDIL + P L EEY++S++ I+ KLR+V+L +++ D DL
Sbjct: 61 LIDVFLEIDSSNIDAVDILHESPIILTEEYVLSMIRTINLKLRLVELRDVSFGKDFFRDL 120
Query: 121 CQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180
G +C VL LR+++ +KLNMVG F+ L+TL+LD+C+ L SL +DCF+CMP LM LSMC
Sbjct: 121 SHDGLACQVLKLRSSHFQKLNMVGGFLQLHTLNLDYCTHLTSLQKDCFACMPNLMRLSMC 180
Query: 181 ETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQ 240
ETR+ NLWTT+A +SK+P L+ELRFQ C CC++TGPC G + DN
Sbjct: 181 ETRVANLWTTSAVLSKIPSLVELRFQTCPCCENTGPC--------PIIGLLELSSDNALP 232
Query: 241 IVCKKFRDADEVELPKYLRTMNLMELSSCLSPNLNGHAEMLDEVNDSNEFPGGAHKQDLM 300
+ K EV + M++ + L LN DL
Sbjct: 233 VSKKHGHLQKEVSFSE----MHVQHKNGSLLSGLN---------------------WDLT 267
Query: 301 DANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVFARYFEH 360
DA + LK ISHHPSPICFEKHYR+YMIASLP L+VLDNL I ++DRE AK++F++Y+E+
Sbjct: 268 DAAIALKYCISHHPSPICFEKHYRDYMIASLPLLQVLDNLLIRKMDREKAKTIFSKYYEY 327
Query: 361 LPYKRKHKESVVSLLQKREMGTSGNYQNSS-KPKQPNIHR-TQHFFSRSLSAAKLGSSAW 418
LPYKR+ ESVV++LQKREMG+S + S KPKQP ++ + +FFSRSL A KLG AW
Sbjct: 328 LPYKRQ-PESVVTVLQKREMGSSTIHDRKSLKPKQPTSYKKSPYFFSRSLCATKLG--AW 384
Query: 419 PLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS 478
PLL+PVS+ S+ K+ +K++RPRQFEY+PSN SLM FGTLDGE++V NHE+GN+ Y PS
Sbjct: 385 PLLYPVSNISYTSKQESKQLRPRQFEYHPSNSSLMVFGTLDGEIVVFNHESGNIVGYSPS 444
Query: 479 IGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLT 538
IG NSVLGLCWLKK PSKL+AGSD+G + L+D+NH+PP +ADA +S + TY FEQLT
Sbjct: 445 IGAANSVLGLCWLKKCPSKLLAGSDNGSLNLYDINHMPPNIADAYCSSGIVTYDRFEQLT 504
Query: 539 SVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590
SVHVNSTDD FL SGYSK+VALYDI + K L+LF +MHREPINVAKFS+HSP
Sbjct: 505 SVHVNSTDDWFLVSGYSKHVALYDIGSGKRLKLFNNMHREPINVAKFSNHSP 556
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083092|emb|CBI22496.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 321/617 (52%), Positives = 431/617 (69%), Gaps = 39/617 (6%)
Query: 1 MAMDMSTLEARYLDSCRRRETQPNSSVLSWFSEAKIQNPNNEKCSILVYLDQLKNADIYP 60
MA+D+ TLE RY+DSCR+ PN+ VLS +AK++ N+E CS++V+LD++K+ D YP
Sbjct: 31 MAVDIPTLEERYVDSCRQHGAPPNTEVLSALLKAKVKRNNHEPCSMVVFLDRVKDIDFYP 90
Query: 61 LIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDL 120
L+D+ E+D+ +I+AVDI ++ C L EY +SLM AI+QKLR+VDL +++L D L DL
Sbjct: 91 LLDLLMEIDASEIDAVDIFNESSCVLNGEYALSLMRAINQKLRIVDLQDLSLGKDFLRDL 150
Query: 121 CQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180
Q G +C L LR+++ RKLN++G+FM ++TL+LDF +SL S EDCF+CMP L CLSMC
Sbjct: 151 SQRGLTCQALNLRSSHFRKLNLIGKFMQMHTLNLDFSTSLTSFREDCFTCMPNLRCLSMC 210
Query: 181 ETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDR------- 233
ETR+ NLWTT AA+SKLP L ELRFQ CLCC DTGPC S K A+DR
Sbjct: 211 ETRVSNLWTTIAALSKLPSLAELRFQNCLCCYDTGPCPVSSGGK-----ANDRTYSEFFL 265
Query: 234 ----VKDNEDQIVCKKFRDADEVELPKYLRTMNLMELSSCLSPNLNGHAEM--------L 281
+ + E Q + D EV+ + + L+EL LS ++ +E+
Sbjct: 266 HNNVIMNPEFQNTTEDSSDDSEVDFSTHQQEFGLVEL---LSNAVDLQSEVPFCTSWTQS 322
Query: 282 DEVNDSNEFPGGA--HKQDLMDANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDN 339
+EV+ + F + QD+M KY+SHHPSPICFEKHYREYMIASLP L VLDN
Sbjct: 323 EEVSLKDAFSSQSIPFLQDIM------LKYVSHHPSPICFEKHYREYMIASLPHLNVLDN 376
Query: 340 LPIGRLDREIAKSVFARYFEHLPYKRKHKESVVSLLQKREMGTSGNYQNSSKPKQPNI-- 397
L I ++R+ A ++FA+YFE+LPY+R KE+VV +LQ RE+ N + K K+P+
Sbjct: 377 LLIKEIERDFASAIFAQYFEYLPYRRNRKENVVDILQMREIKAIHNRIQTPK-KKPSCPP 435
Query: 398 HRTQHFFSRSLSAAKLGSSAWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGT 457
R+Q+F+SRSL AAK+GSS WPLLHP+S + G + RPRQFEY+PSN SLM FGT
Sbjct: 436 GRSQYFYSRSLGAAKVGSSPWPLLHPLSILGND-SGGERSFRPRQFEYHPSNSSLMVFGT 494
Query: 458 LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517
LDG+V+V+NHE+ + YIPS+G NSVLGLCWLKK+PSKL+AGSD+G ++L+D+ H+
Sbjct: 495 LDGDVVVVNHESEKIVSYIPSLGAMNSVLGLCWLKKHPSKLIAGSDNGSLKLYDIQHMSS 554
Query: 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHR 577
VAD ++ AT+ +F+QLTSVHVNSTD+ FLASGYSKNVALYDIN+ + LQ+FTDMH+
Sbjct: 555 TVADIYCSAGSATFDEFDQLTSVHVNSTDELFLASGYSKNVALYDINSGRRLQMFTDMHQ 614
Query: 578 EPINVAKFSHHSPLCLL 594
E INV KF++HSP +
Sbjct: 615 EHINVVKFANHSPFLFV 631
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475456|ref|XP_002269406.2| PREDICTED: uncharacterized protein LOC100267918 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 319/622 (51%), Positives = 432/622 (69%), Gaps = 39/622 (6%)
Query: 1 MAMDMSTLEARYLDSCRRRETQPNSSVLSWFSEAKIQNPNNEKCSILVYLDQLKNADIYP 60
MA+D+ TLE RY+DSCR+ PN+ VLS +AK++ N+E CS++V+LD++K+ D YP
Sbjct: 1 MAVDIPTLEERYVDSCRQHGAPPNTEVLSALLKAKVKRNNHEPCSMVVFLDRVKDIDFYP 60
Query: 61 LIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDL 120
L+D+ E+D+ +I+AVDI ++ C L EY +SLM AI+QKLR+VDL +++L D L DL
Sbjct: 61 LLDLLMEIDASEIDAVDIFNESSCVLNGEYALSLMRAINQKLRIVDLQDLSLGKDFLRDL 120
Query: 121 CQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180
Q G +C L LR+++ RKLN++G+FM ++TL+LDF +SL S EDCF+CMP L CLSMC
Sbjct: 121 SQRGLTCQALNLRSSHFRKLNLIGKFMQMHTLNLDFSTSLTSFREDCFTCMPNLRCLSMC 180
Query: 181 ETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKN--------------- 225
ETR+ NLWTT AA+SKLP L ELRFQ CLCC DTGPC S K
Sbjct: 181 ETRVSNLWTTIAALSKLPSLAELRFQNCLCCYDTGPCPVSSGGKANDRTYSVQPQRGPLI 240
Query: 226 QASGADDRVKDNEDQIVCKKFRD-ADEVELPKYLRTMNLMELSSCLSPNLNGHAEM---- 280
+A D + N++ + F++ EV+ + + L+EL LS ++ +E+
Sbjct: 241 EAPSVDGWILGNQNSTAQEAFQEFFFEVDFSTHQQEFGLVEL---LSNAVDLQSEVPFCT 297
Query: 281 ----LDEVNDSNEFPGGA--HKQDLMDANVKLKKYISHHPSPICFEKHYREYMIASLPQL 334
+EV+ + F + QD+M KY+SHHPSPICFEKHYREYMIASLP L
Sbjct: 298 SWTQSEEVSLKDAFSSQSIPFLQDIM------LKYVSHHPSPICFEKHYREYMIASLPHL 351
Query: 335 EVLDNLPIGRLDREIAKSVFARYFEHLPYKRKHKESVVSLLQKREMGTSGNYQNSSKPKQ 394
VLDNL I ++R+ A ++FA+YFE+LPY+R KE+VV +LQ RE+ N + K K+
Sbjct: 352 NVLDNLLIKEIERDFASAIFAQYFEYLPYRRNRKENVVDILQMREIKAIHNRIQTPK-KK 410
Query: 395 PNI--HRTQHFFSRSLSAAKLGSSAWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSL 452
P+ R+Q+F+SRSL AAK+GSS WPLLHP+S + G + RPRQFEY+PSN SL
Sbjct: 411 PSCPPGRSQYFYSRSLGAAKVGSSPWPLLHPLSILGND-SGGERSFRPRQFEYHPSNSSL 469
Query: 453 MAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512
M FGTLDG+V+V+NHE+ + YIPS+G NSVLGLCWLKK+PSKL+AGSD+G ++L+D+
Sbjct: 470 MVFGTLDGDVVVVNHESEKIVSYIPSLGAMNSVLGLCWLKKHPSKLIAGSDNGSLKLYDI 529
Query: 513 NHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLF 572
H+ VAD ++ AT+ +F+QLTSVHVNSTD+ FLASGYSKNVALYDIN+ + LQ+F
Sbjct: 530 QHMSSTVADIYCSAGSATFDEFDQLTSVHVNSTDELFLASGYSKNVALYDINSGRRLQMF 589
Query: 573 TDMHREPINVAKFSHHSPLCLL 594
TDMH+E INV KF++HSP +
Sbjct: 590 TDMHQEHINVVKFANHSPFLFV 611
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147861826|emb|CAN78929.1| hypothetical protein VITISV_026521 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 321/643 (49%), Positives = 432/643 (67%), Gaps = 60/643 (9%)
Query: 1 MAMDMSTLEARYLDSCRRRETQPNSSVLSWFSEAKIQNPNNEKCSILVYLDQLKNADIYP 60
MA+D+ TLE RY+DSCR+ PN+ VLS +AK++ N+E CS++V+LD++K+ D YP
Sbjct: 1 MAVDIPTLEERYVDSCRQHGAPPNTEVLSALFKAKVKRNNHEPCSMVVFLDRVKDIDFYP 60
Query: 61 LIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDL 120
L+D+ E+D+ +I+AVDI ++ C L EY +SLM AI+QKLR+VDL +++L D L DL
Sbjct: 61 LLDLLMEIDASEIDAVDIFNESSCVLNGEYALSLMRAINQKLRIVDLQDLSLGKDFLRDL 120
Query: 121 CQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180
Q G +C L LR+++ RKLN++G+FM ++TL+LDF +SL S EDCF+CMP L CLSMC
Sbjct: 121 SQRGLTCQALNLRSSHFRKLNLIGKFMQMHTLNLDFSTSLTSFREDCFTCMPNLRCLSMC 180
Query: 181 ETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKN--------------- 225
ETR+ NLWTT AA+SKLP L ELRFQ CLCC DTGPC S K
Sbjct: 181 ETRVSNLWTTIAALSKLPSLAELRFQNCLCCYDTGPCPVSSGGKANDRTYSVQPQRGPLI 240
Query: 226 QASGADDRVKDNEDQIVCKKFR----------------------DADEVELPKYLRTMNL 263
+A D + N++ + F+ D EV+ + + L
Sbjct: 241 EAPSVDGWILGNQNSTAQEAFQEFFLHNNVIMNPEFQNTTEDSSDDSEVDFSTHQQEFGL 300
Query: 264 MELSSCLSPNLNGHAEM--------LDEVNDSNEFPGGAHK--QDLMDANVKLKKYISHH 313
+EL LS ++ +E+ +EV+ + F + QD+M KY+SHH
Sbjct: 301 VEL---LSNAVDLQSEVPFCTSWTQSEEVSLKDAFSSQSXPFLQDIM------LKYVSHH 351
Query: 314 PSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVFARYFEHLPYKRKHKESVVS 373
PSPICFEKHYREYMIASLP L VLDNL I ++R+ A ++FA+YFE+LPY+R KE+VV
Sbjct: 352 PSPICFEKHYREYMIASLPHLNVLDNLLIKEIERDFASAIFAQYFEYLPYRRNRKENVVG 411
Query: 374 LLQKREMGTSGNYQNSSKPKQPNI--HRTQHFFSRSLSAAKLGSSAWPLLHPVSSFSHIY 431
+LQ RE+ N + K K+P+ R+Q+F+SRSL AAK+GSS WPLLHP+S +
Sbjct: 412 ILQMREIKAIHNRIQTPK-KKPSCPPGRSQYFYSRSLGAAKVGSSPWPLLHPLSILGND- 469
Query: 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWL 491
G + RPRQFEY+PSN SLM FGTLDG+V+V+NHE+ + YIPS+G NSVLGLCWL
Sbjct: 470 SGGERSFRPRQFEYHPSNSSLMVFGTLDGDVVVVNHESEKIVSYIPSLGAMNSVLGLCWL 529
Query: 492 KKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLA 551
KKYPSKL+AGSD+G ++L+D+ H+ VAD ++ AT+ +F+QLTSVHVNSTD+ FLA
Sbjct: 530 KKYPSKLIAGSDNGSLKLYDIQHMSSTVADIYCSAGSATFDEFDQLTSVHVNSTDELFLA 589
Query: 552 SGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594
SGYSKNVALYDIN+ + LQ+FTDMH+E INV KF++HSP +
Sbjct: 590 SGYSKNVALYDINSGRRLQMFTDMHQEHINVVKFANHSPFLFV 632
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534295|ref|XP_003535692.1| PREDICTED: uncharacterized protein LOC100806443 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 315/624 (50%), Positives = 416/624 (66%), Gaps = 40/624 (6%)
Query: 1 MAMDMSTLEARYLDSCRRRETQPNSSVLSWFSEAKIQNPNNEKCSILVYLDQLKNADIYP 60
M +D+ TLE RY+DSCRR + PNSS+LS +A+++ N+E CS+ + +D LK+ADI P
Sbjct: 1 MVIDIETLEDRYIDSCRRHDVFPNSSILSSLFKAEVKKSNHELCSLEILIDDLKDADIAP 60
Query: 61 LIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDL 120
L D+ D+ +IEAVD+ ++ C L EY +SLM AI+QKLRVV L + + D L D+
Sbjct: 61 LFDLCMNFDASEIEAVDVRNESSCVLNGEYALSLMRAINQKLRVVHLQDPSFGKDFLRDI 120
Query: 121 CQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180
Q G +C VL LR + RKLN +G FMH++TL+LDF SSL S EDCF+CMP LM LSMC
Sbjct: 121 SQRGLACQVLTLRCSRFRKLNFMGEFMHIHTLNLDFSSSLTSFQEDCFNCMPNLMRLSMC 180
Query: 181 ETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQ 240
+TRI NLWTT AA+SKLP L+ELRFQ C D S K+ + AD + D+
Sbjct: 181 DTRITNLWTTVAALSKLPSLIELRFQYWQYCNDAVTSFISSSGKSDDT-ADFSLLDSV-P 238
Query: 241 IVCKKFRDADEVELPKYLRTMNLMELSSCLSPNLNGHAE-MLDEVNDSNE---------- 289
+ + + E+ P + L S +N + M+++ +D +E
Sbjct: 239 FIGEPYTYTTELTDPNFNAEDPLRNFYSFDEEVINHDVQSMVEDSSDDSEVDFTSRHHKY 298
Query: 290 -----FPGGAHKQDLM---------------DANVKLK-KYISHHPSPICFEKHYREYMI 328
FPG + + L D+N + KY+S H SPIC+EKHYRE+MI
Sbjct: 299 WLSDVFPGWSSEVPLQNENEDGEESLQAAFTDSNADVSMKYMSRHASPICYEKHYREFMI 358
Query: 329 ASLPQLEVLDNLPIGRLDREIAKSVFARYFEHLPYKRKHKESVVSLLQKREMGTSGNYQN 388
ASLP L+ LDN+PI ++D+E A +F++YFE+LPYK KHKESVVS+LQKRE+ + N
Sbjct: 359 ASLPNLKNLDNMPIRKIDKERATGIFSQYFEYLPYKWKHKESVVSILQKREIKSVHNKVQ 418
Query: 389 SSKPK--QPNIHRTQHFFSRSLSAAKLGSSAWPLLHPVSSFSHIYKEGNKRVRPRQFEYN 446
SSK + P+ ++Q+F+SRSLSAAKLGSS WP+LHP+ S + E +K PRQFEY+
Sbjct: 419 SSKHRLSYPS-GKSQYFYSRSLSAAKLGSSTWPILHPL---SFVGCELDKGFHPRQFEYH 474
Query: 447 PSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC 506
PS+ SLM FGTLDGEV+VINHE ++ YIPS+G NSVLGLCWLKKYPSKL+AGSD+G
Sbjct: 475 PSDSSLMVFGTLDGEVVVINHETEHILSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGS 534
Query: 507 VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE 566
++L+D+ HIP KV GN T+ +F+QLTSVHVNS D+ FLASGYS+NVALYDIN+
Sbjct: 535 LKLYDIYHIPRKVTGLHGNFGCVTFDEFDQLTSVHVNSMDELFLASGYSRNVALYDINSG 594
Query: 567 KPLQLFTDMHREPINVAKFSHHSP 590
K LQ+FTDMHR INV KF++HSP
Sbjct: 595 KRLQVFTDMHRGHINVVKFANHSP 618
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574293|ref|XP_003555283.1| PREDICTED: uncharacterized protein LOC100811988 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 310/614 (50%), Positives = 415/614 (67%), Gaps = 39/614 (6%)
Query: 1 MAMDMSTLEARYLDSCRRRETQPNSSVLSWFSEAKIQNPNNEKCSILVYLDQLKNADIYP 60
M +D+ +LE RY+D CRR + PNSS+LS +A+++ N+E CS+ + +D LK+ DI P
Sbjct: 1 MVIDIESLEDRYIDFCRRHDVLPNSSILSSLFKAEVKKSNHEPCSMEILIDDLKDVDIAP 60
Query: 61 LIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDL 120
L+D+ +D+ +IEAVD+ ++ L EY +SLM AI+QKLRVV L + + D L D+
Sbjct: 61 LLDLCMNLDTSEIEAVDVRNESSSVLNGEYALSLMRAINQKLRVVHLQDSSFGKDFLRDI 120
Query: 121 CQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180
Q G +C VL LR + RKLN++G FMH++TL+LDF SSL S EDCF+CMP LM LSMC
Sbjct: 121 SQRGLACQVLTLRCSRFRKLNLMGEFMHIHTLNLDFSSSLTSFQEDCFNCMPNLMRLSMC 180
Query: 181 ETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKD---- 236
+T+I NLWTT AA+SKLP L+ELRFQ C D ++ + +SG D D
Sbjct: 181 DTQITNLWTTVAALSKLPSLIELRFQYLQYCND------AVTSFIPSSGKSDDTADFSPL 234
Query: 237 NEDQIVCKKFRDADEVELPKY-----LRTMNLMELSSCLSPNLNGHAE--------MLDE 283
+ + + D E+ P + LR + ++P++ E + +E
Sbjct: 235 DSVPFIGEPHTDTTELTDPNFNAEDPLRNFYSFD-EEVINPDVQSMVEDSSDDKVPLQNE 293
Query: 284 V------NDSNEFPGGAHKQDLMDANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVL 337
V D E GA + D ++ KY+S H SPIC+EKHYRE+MIASLP L+ L
Sbjct: 294 VWFTLQNEDGEESLQGAFTDRIADVSM---KYMSCHASPICYEKHYREFMIASLPNLKNL 350
Query: 338 DNLPIGRLDREIAKSVFARYFEHLPYKRKHKESVVSLLQKREMGTSGNYQNSSK--PKQP 395
DN+PI ++D+E A +F++YFE+LPYK KHKESVVS+LQKRE+ + N SSK P P
Sbjct: 351 DNMPIRKIDKERATRIFSQYFEYLPYKWKHKESVVSILQKREIKSGHNKVQSSKHRPSYP 410
Query: 396 NIHRTQHFFSRSLSAAKLGSSAWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAF 455
+ ++Q+F++RSLSAAKLGSS WP+LHP+S + E +K PRQFEY+PS+ SLM F
Sbjct: 411 S-GKSQYFYTRSLSAAKLGSSTWPILHPLSL---VGCELDKGFHPRQFEYHPSDSSLMVF 466
Query: 456 GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515
GTLDGEV+VINHE ++ YIPS+G NSVLGLCWLKKYPSKL+AGSD+G ++L+D++HI
Sbjct: 467 GTLDGEVVVINHETEHIVSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIHHI 526
Query: 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM 575
P KV GN T+ +F+QLTSVHVNSTD+ FLASGYSKNVALYDIN+ K LQ+FTDM
Sbjct: 527 PRKVTGIHGNFGCVTFDEFDQLTSVHVNSTDELFLASGYSKNVALYDINSGKRLQVFTDM 586
Query: 576 HREPINVAKFSHHS 589
HR INV KF++HS
Sbjct: 587 HRGHINVVKFANHS 600
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105657|ref|XP_002313890.1| predicted protein [Populus trichocarpa] gi|222850298|gb|EEE87845.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 301/603 (49%), Positives = 397/603 (65%), Gaps = 29/603 (4%)
Query: 11 RYLDSCRRRETQPNSSVLSWFSEAKIQNPNNEKCSILVYLDQLKNADIYPLIDVFTEMDS 70
RY+DSC+RR+ PN+ +LS F +A+++ NE CS+ + LD LK+ D+ PL+DV +++
Sbjct: 1 RYIDSCKRRDVLPNTEILSGFFKAEVKKSCNELCSLEIILDHLKDIDVPPLLDVCATIET 60
Query: 71 FDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGSSCHVL 130
+IEAVDI + C L E +SLM A +QKLR VDL + D L +L Q G +C +L
Sbjct: 61 SEIEAVDIRNGPSCSLNGECALSLMRAFNQKLRAVDLQDSPFGKDFLRELSQRGLACQIL 120
Query: 131 ILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTT 190
LR+++ RKLNM G+FM ++TL+LDF +SL S EDCF+CMP L+CLSMCETR+ NLWTT
Sbjct: 121 NLRSSHFRKLNMAGKFMQIHTLNLDFSTSLTSFLEDCFTCMPNLICLSMCETRVANLWTT 180
Query: 191 TAAISKLPYLMELRFQMCLCCK----------------DTGPCRASLDAKNQASGADDRV 234
+A+SKL L+ELRFQ LC D G + D Q + ++
Sbjct: 181 ISALSKLSCLVELRFQKWLCNDSASPSASSGGNLEDQPDVGLPISCTDIGEQLTDIEEET 240
Query: 235 KDNEDQIVCKKFRDADEVELPKYLRTMNLMELSSCLSPNLNGHAEMLDEV------NDSN 288
N + FR+ EV+ R +L + S N + +EV N
Sbjct: 241 YLNPG--TDEAFRNF-EVDFSSNWREFGYTDLLANFSSGWNRQVNLQNEVSSGASLNQKE 297
Query: 289 EFPGGAHKQDLMDANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDRE 348
E G+ + + D +K YI H SPICFEKHYREYMIASLP L+VLDNLP+ ++DRE
Sbjct: 298 ESLTGSFGRHIADVPLK---YIPRHASPICFEKHYREYMIASLPNLKVLDNLPVRKIDRE 354
Query: 349 IAKSVFARYFEHLPYKRKHKESVVSLLQKREMGTSGNYQNSSKPKQPNIH-RTQHFFSRS 407
A F++YFE+LPY RKHKESVVS+L KRE+ + ++ S K H +Q+F++RS
Sbjct: 355 RAAVTFSQYFEYLPYNRKHKESVVSILHKREIKETRSHIQSKNQKLSYSHGNSQYFYTRS 414
Query: 408 LSAAKLGSSAWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINH 467
L AAK+GSSAWP LH +S +G++ RPRQFEY+PS SLM FGTLDGEV+V+NH
Sbjct: 415 LGAAKVGSSAWPFLHSLSVSGCDLGDGSRSFRPRQFEYHPSLSSLMVFGTLDGEVVVVNH 474
Query: 468 ENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSS 527
ENG V Y+PS+G NSVLGLCWLKKYPSKL+AGSD+G ++L+D+ H+PP V +
Sbjct: 475 ENGKVVRYVPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIEHLPPTVTGRYLGAG 534
Query: 528 VATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSH 587
T+ DF+QLTSVH+NSTD+ FLASGYSKNVALYDIN + +Q+FTDMHRE INV KFS+
Sbjct: 535 SITFDDFDQLTSVHINSTDELFLASGYSKNVALYDINYGRRIQVFTDMHREHINVVKFSN 594
Query: 588 HSP 590
HSP
Sbjct: 595 HSP 597
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060678|ref|XP_002300252.1| predicted protein [Populus trichocarpa] gi|222847510|gb|EEE85057.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 303/628 (48%), Positives = 403/628 (64%), Gaps = 42/628 (6%)
Query: 2 AMDMSTLEARYLDSCRRRETQPNSSVLSWFSEAKIQNPNNEKCSILVYLDQLKNADIYPL 61
+ ++STLE Y+DSC+R PN+ +LS F +A+++ NE CS+ + LD L++ D+ PL
Sbjct: 7 SFNISTLEQMYIDSCKRHGVLPNTEILSGFLKAEVKKSCNEICSLEIILDHLEDIDVPPL 66
Query: 62 IDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLL--- 118
+DV +++ +IE VDI + C L EY +SLM A +QKL+VVDL ++ D L
Sbjct: 67 LDVCATIETSEIEVVDIRNGPNCTLHVEYALSLMRAFNQKLQVVDLQDLPFGKDFLRFIL 126
Query: 119 -DLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177
+L Q G +C +L LR+++ R LNM G+FM ++TL+LDF +SL S EDCF+CMP L CL
Sbjct: 127 RELSQKGLACQILNLRSSHFRNLNMAGKFMQIHTLNLDFSTSLTSFQEDCFTCMPILTCL 186
Query: 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTG--------------PCRASLDA 223
SMCETR+ NLWTT AA+SKL L+ELRFQ +CC D+ R L
Sbjct: 187 SMCETRVANLWTTIAALSKLSSLVELRFQKWICCNDSASPSASSGGNLEDQPDVRELLTD 246
Query: 224 KNQAS----GAD----------DRVKDNEDQIVCKKFRDADEVELPKYLRTMNLMELSSC 269
++ S G D D + Q + + D +EV+ Y + + M+L +
Sbjct: 247 IDEESFLNQGTDEGTGNVFSFNDIATGQQVQSMMEDSSDDNEVDFSSYWQEFDYMDLLAN 306
Query: 270 LSPNLNGHAEMLDEV------NDSNEFPGGAHKQDLMDANVKLKKYISHHPSPICFEKHY 323
S N + E+ N E G+ + + D KYISHH SPICFEKHY
Sbjct: 307 FSSGWNRQVNLQSELSSGTSRNKKEESLHGSFGRHVADVP---SKYISHHASPICFEKHY 363
Query: 324 REYMIASLPQLEVLDNLPIGRLDREIAKSVFARYFEHLPYKRKHKESVVSLLQKREMGTS 383
REYMIASLP L+VLDNLP+ ++D E A F++YFE+LPY RKHKESVVS+L KRE+ +
Sbjct: 364 REYMIASLPNLKVLDNLPVRKIDSERAAVTFSQYFEYLPYNRKHKESVVSILHKREIKDT 423
Query: 384 GNYQNSSKPKQPNIHRTQHF-FSRSLSAAKLGSSAWPLLHPVSSFSHIYKEGNKRVRPRQ 442
++ S K H + ++RSL AAKLGSSAWPLLH +S +G++ RPRQ
Sbjct: 424 RSHMLSKNQKPSYSHGNSLYSYTRSLCAAKLGSSAWPLLHSLSVSGCDLGDGSRSFRPRQ 483
Query: 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS 502
FEY+PS SLM FGTLDGEV+V+NHEN V Y+ S+G NSVLGLCWLKKYPSK +AGS
Sbjct: 484 FEYHPSLSSLMVFGTLDGEVVVVNHENEKVVRYVSSLGAMNSVLGLCWLKKYPSKFIAGS 543
Query: 503 DSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYD 562
DSG ++L+D+ H+PP V + T+ DF+QLTSVHVNSTD+ FLASGYSKNVALYD
Sbjct: 544 DSGLLKLYDIEHMPPTVTGMYSAAGSITFDDFDQLTSVHVNSTDELFLASGYSKNVALYD 603
Query: 563 INTEKPLQLFTDMHREPINVAKFSHHSP 590
IN+ + +Q+FTD+HRE INV KFS+HSP
Sbjct: 604 INSGRRIQVFTDVHREHINVVKFSNHSP 631
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 606 | ||||||
| TAIR|locus:2116179 | 783 | AT4G34280 "AT4G34280" [Arabido | 0.940 | 0.727 | 0.424 | 1.6e-117 | |
| UNIPROTKB|Q92466 | 427 | DDB2 "DNA damage-binding prote | 0.174 | 0.248 | 0.269 | 0.00028 |
| TAIR|locus:2116179 AT4G34280 "AT4G34280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 1.6e-117, Sum P(2) = 1.6e-117
Identities = 258/608 (42%), Positives = 375/608 (61%)
Query: 4 DMSTLEARYLDSCRRRETQPNSSVLSWFSEAKIQNPNNEKCSILVYLDQLKNADIYPLID 63
+++TLE +Y++ C+ PN+++LS F EA+++ N++C + +Y+D++K D PL++
Sbjct: 6 EIATLEEKYIELCKMHGILPNTAILSAFFEAEVKKSRNQRCIMNLYVDRVKYDDYLPLLE 65
Query: 64 VFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQV 123
+ E+++ +++ +D+ + C L++ Y + L+ +++QKLRVV L + +N D+
Sbjct: 66 LCNEINTSEVQGIDLFVRSACSLEDHYALPLIRSVNQKLRVVHLHDSFGKNF-WQDVFFQ 124
Query: 124 GSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETR 183
G SC VL +R+ +I KLN+VG F L+TL LD + + EDCFSCMP L LSMC+T
Sbjct: 125 GLSCKVLNVRSMHIHKLNIVGEFTQLHTLILDK-NRIVGFGEDCFSCMPKLTYLSMCDTL 183
Query: 184 IVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVC 243
+ +LWT+ AA+ KLP L ELRFQ+ + C D+ P + + + +++ +
Sbjct: 184 VSDLWTSAAALLKLPSLKELRFQIWISCSDSSPLNSESSPSSSTKDDINTFIESDPPVEA 243
Query: 244 KKFRDADEVE--LP--KYLRTMNLM-------ELSS--CLSPNLNGHAEMLDEVNDSNE- 289
+ A++++ LP + L +M+ +L S +S LNG M ++V
Sbjct: 244 DMWDVAEQMDPSLPVEETLHSMDFSYKIPEQDDLDSHVSVSAGLNGEVLMREKVRRGKMP 303
Query: 290 -FPGGAHKQDLMD---ANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRL 345
P D NV LK YIS SPIC EKHYR YMI SLP+L+VLDNL I +
Sbjct: 304 YQPKDVSPVDTFTRQFGNVGLK-YISSKASPICSEKHYRMYMINSLPKLQVLDNLAIRKS 362
Query: 346 DREIAKSVFARYFEHLPYKRKHKESVVSLLQKREMGTSGNYQNSSKPKQPNIHRTQHFFS 405
DR+ A ++ FE LPYKRK KESVV +L+ RE + SSK K +Q+ +
Sbjct: 363 DRDKAIETYSANFEDLPYKRK-KESVVRVLENRE-------KRSSKGK------SQNSYK 408
Query: 406 RSLSAAKLGSSAWPLLHPVSSFS-HIYKEG-NKRVRPRQFEYNPSNPSLMAFGTLDGEVI 463
RSL AAK+GS A PLLH + S I +E N R+ PRQFEY+P +PSLM FGTLDGEV+
Sbjct: 409 RSLCAAKMGSPASPLLHSLPFLSSRIQQEDDNSRLCPRQFEYHPLDPSLMVFGTLDGEVV 468
Query: 464 VINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVA-DA 522
V+NHE+G + YIPS G +++LGLCWLK YPS ++AGS +G ++L+D+ V +
Sbjct: 469 VLNHESGKIFRYIPSNGSQSTILGLCWLKIYPSMVIAGSANGSLKLYDIQKASSTVTTSS 528
Query: 523 RGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV 582
S T+ +F+QLTSVH NSTD FLASGYSK+VALYDI LQ+F +MH+E INV
Sbjct: 529 HSTSGSVTFDEFDQLTSVHANSTDQLFLASGYSKDVALYDIGRGTRLQVFANMHQEHINV 588
Query: 583 AKFSHHSP 590
KFS+HSP
Sbjct: 589 VKFSNHSP 596
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| UNIPROTKB|Q92466 DDB2 "DNA damage-binding protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 104 (41.7 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 31/115 (26%), Positives = 53/115 (46%)
Query: 406 RSLSAAKLGSSAWP---------LLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFG 456
R+L KLG ++WP LH + S+ + K R ++P++PS +A G
Sbjct: 71 RTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVG 130
Query: 457 TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511
+ G++++ N + +I IG S+ GL + ++ A S G RL D
Sbjct: 131 SKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 185
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.205.73.1 | hypothetical protein (768 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 606 | |||
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.001 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.002 | |
| smart00446 | 19 | smart00446, LRRcap, occurring C-terminal to leucin | 0.002 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.2 bits (108), Expect = 4e-05
Identities = 34/175 (19%), Positives = 57/175 (32%), Gaps = 13/175 (7%)
Query: 420 LLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI 479
L + I ++P L + +LDG + + + G +
Sbjct: 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-- 195
Query: 480 GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTS 539
G T+ V L + + +GS G +RL+DL + + +
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL----------STGKLLRSTLSGHSDSV 245
Query: 540 VHVNSTDDQFLASGYSKN-VALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593
V S D LASG S + L+D+ + L H + FS L
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA 300
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 35/145 (24%)
Query: 480 GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN----------HIPP------------ 517
G T V + + L GS G ++++DL H P
Sbjct: 7 GHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65
Query: 518 ----------KVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTE 566
++ D V T ++SV + +S K + ++D+ T
Sbjct: 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125
Query: 567 KPLQLFTDMHREPINVAKFSHHSPL 591
K L H + +N FS
Sbjct: 126 KCLTTLRG-HTDWVNSVAFSPDGTF 149
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 482 TNSVLGLCWLKKYPSKLVAGSDS-GCVRLFDLNHIPPKVADARGNSSVATYYDFE-QLTS 539
T+ V + + VA S G ++L+DL R VAT ++ S
Sbjct: 135 TDWVNSVAFSP--DGTFVASSSQDGTIKLWDL----------RTGKCVATLTGHTGEVNS 182
Query: 540 VHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589
V + ++ L+S + L+D++T K L H +N FS
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-HENGVNSVAFSPDG 231
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 17/138 (12%)
Query: 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511
+A G+ D + + + E G + G T+ V + + L + S ++++D
Sbjct: 65 YLASGSSDKTIRLWDLETGECVRTL--TGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWD 121
Query: 512 LNHIPPKVADARG-NSSVATYYDFEQLTSVHVNSTDDQFLASG-YSKNVALYDINTEKPL 569
+ + RG V SV S D F+AS + L+D+ T K +
Sbjct: 122 VE-TGKCLTTLRGHTDWV---------NSVAF-SPDGTFVASSSQDGTIKLWDLRTGKCV 170
Query: 570 QLFTDMHREPINVAKFSH 587
T H +N FS
Sbjct: 171 ATLTG-HTGEVNSVAFSP 187
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
Query: 482 TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQ-LTSV 540
T V + + KL++ S G ++L+DL + T E + SV
Sbjct: 177 TGEVNSVAFSPD-GEKLLSSSSDGTIKLWDL----------STGKCLGTLRGHENGVNSV 225
Query: 541 HVNSTDDQFLASGYS-KNVALYDINTEKPLQLFTDMHREPINVAKFS 586
S D LASG + ++D+ T + +Q + H + +S
Sbjct: 226 AF-SPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWS 270
|
Length = 289 |
| >gnl|CDD|197729 smart00446, LRRcap, occurring C-terminal to leucine-rich repeats | Back alignment and domain information |
|---|
Score = 35.7 bits (84), Expect = 0.002
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 321 KHYREYMIASLPQLEVLD 338
HYRE +I LPQL LD
Sbjct: 2 AHYREKVIELLPQLRKLD 19
|
A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins. Length = 19 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 606 | |||
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.89 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.88 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.88 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.88 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 99.87 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.86 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.84 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.84 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.84 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.83 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.83 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.83 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.82 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.82 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.82 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.81 | |
| PTZ00421 | 493 | coronin; Provisional | 99.81 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.81 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.81 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.8 | |
| PTZ00420 | 568 | coronin; Provisional | 99.79 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.79 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.79 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.78 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.78 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.78 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.77 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.76 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.76 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.76 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.74 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.74 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.74 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.74 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.74 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.74 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.72 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.72 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.71 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.71 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.71 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.71 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.71 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.71 | |
| PTZ00421 | 493 | coronin; Provisional | 99.71 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.71 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.7 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.7 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.7 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.7 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.7 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.7 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.7 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.69 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.69 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.69 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.68 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.68 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.68 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.68 | |
| PTZ00420 | 568 | coronin; Provisional | 99.67 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.67 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.67 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.67 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.66 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.66 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.65 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.65 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.64 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.64 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.64 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.63 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.63 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.62 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.62 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.62 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.61 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.6 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.59 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.59 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.59 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.58 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.57 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.56 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.56 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.56 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.56 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.56 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.56 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.55 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.54 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.54 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.53 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.52 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.52 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.52 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.51 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.51 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.5 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.5 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.5 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.5 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.49 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.48 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.47 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.46 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.46 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.46 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.45 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.45 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.45 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.44 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.44 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.43 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.43 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.42 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.41 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.41 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.4 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.4 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.38 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.38 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.37 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.37 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.37 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.36 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.34 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.34 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.33 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.33 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.33 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.32 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.32 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.3 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.3 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.28 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.28 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.27 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.26 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.25 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.24 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.24 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.24 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.24 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.23 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.22 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.22 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.21 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.21 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.19 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.19 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.18 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.18 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.18 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.16 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.15 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.15 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.14 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.14 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.13 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.11 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.1 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.1 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.1 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.08 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.08 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.07 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.05 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.04 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.04 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.04 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.04 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.04 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.02 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.0 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.94 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.92 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.92 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.92 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.91 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.91 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.9 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.89 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.89 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.88 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.87 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.86 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.85 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.83 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.82 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.81 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.8 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.75 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.75 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.74 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.74 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.72 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.7 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.69 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.61 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.61 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.59 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.57 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.56 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.56 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.53 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.52 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.48 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.48 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.47 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.47 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.46 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.45 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.45 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.44 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.43 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.38 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.35 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.35 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.34 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.34 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.29 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.27 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.24 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.23 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.23 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.2 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.16 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.15 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.15 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.14 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 98.13 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.12 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.11 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.11 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.07 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.06 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.05 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.05 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.01 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.01 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.01 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.01 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 97.98 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.98 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.95 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.93 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.93 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.91 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.87 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.87 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.85 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.81 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.8 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.78 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.76 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.75 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.75 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.69 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.68 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 97.68 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 97.62 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.59 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.58 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.58 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.56 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 97.49 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.46 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.46 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.44 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.41 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.38 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.37 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.37 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.33 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.32 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.28 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.27 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.27 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.26 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.24 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.22 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.2 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.19 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.17 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.16 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.14 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.13 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.13 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.11 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.11 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.11 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 97.09 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.08 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 97.03 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.02 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 97.01 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.98 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.95 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.93 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 96.92 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.9 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 96.83 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 96.83 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.82 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.72 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.66 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 96.55 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 96.52 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.43 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.42 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.36 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.31 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.3 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.28 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.22 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 96.21 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 96.2 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.18 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 96.12 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.03 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.01 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.97 | |
| smart00446 | 26 | LRRcap occurring C-terminal to leucine-rich repeat | 95.95 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.88 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 95.8 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.79 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 95.76 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.74 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 95.73 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 95.71 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 95.65 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.58 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.54 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 95.48 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 95.47 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.43 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.43 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 95.41 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 95.32 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 95.3 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 95.13 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 94.97 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 94.94 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 94.87 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 94.87 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.75 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 94.7 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 94.68 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.59 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 94.57 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 94.56 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 94.5 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 94.46 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 93.98 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 93.98 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 93.82 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 93.77 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.73 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 93.65 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 93.57 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 93.55 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 93.36 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 93.36 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.97 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 92.88 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 92.73 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 92.67 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.64 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.63 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 92.44 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 92.41 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 92.18 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 92.12 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 92.02 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 91.93 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 91.92 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 91.39 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 91.1 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 90.98 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 90.92 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 90.63 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 90.2 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 89.92 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 89.58 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 89.52 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 89.38 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 89.32 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 89.31 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 88.94 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 88.72 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 88.5 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.45 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 88.3 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 88.27 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 88.27 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 87.82 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 87.64 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 87.35 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 87.33 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 87.16 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 86.93 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 86.84 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 86.68 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 86.52 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 86.1 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 85.41 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 85.32 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 85.24 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 84.55 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 84.55 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 84.41 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 84.41 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 84.34 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 83.76 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 83.53 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 83.3 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 82.63 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 82.4 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 82.18 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 82.13 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 82.05 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 81.85 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 81.81 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 81.63 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 81.62 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 81.02 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 80.76 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 80.13 |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-23 Score=215.86 Aligned_cols=151 Identities=13% Similarity=0.215 Sum_probs=140.7
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
||..++||| +|++|+|++.|.+-++||++++......+ ||...|++++|+| ++.+++|||.|..-+|||+++
T Consensus 263 RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QE--GHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRt---- 334 (459)
T KOG0272|consen 263 RVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQE--GHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRT---- 334 (459)
T ss_pred hheeeeecC-CCceeeecccccchhhcccccchhhHhhc--ccccccceeEecC-CCceeeccCccchhheeeccc----
Confidence 477889999 99999999999999999999998877655 9999999999998 789999999999999999999
Q ss_pred cccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..++..+.+| .+|.+|+|+|.|..+||||.|++++|||+|..+.+.+++ +|.+-|+.|+|+|++.+.++|+|
T Consensus 335 ------gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 335 ------GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred ------CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccCCeEEEEcc
Confidence 4678888866 669999999999999999999999999999999999999 89999999999998888899999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|+++++
T Consensus 408 yD~t~ki 414 (459)
T KOG0272|consen 408 YDNTVKI 414 (459)
T ss_pred cCcceee
Confidence 9999985
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-23 Score=210.37 Aligned_cols=189 Identities=16% Similarity=0.219 Sum_probs=171.8
Q ss_pred cCCCCCCCCCCc-chhhHHHHHhhhhccc-cccCCccceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEE
Q 035500 387 QNSSKPKQPNIH-RTQHFFSRSLSAAKLG-SSAWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIV 464 (606)
Q Consensus 387 ~~~~~~~p~~~p-~~~~~y~ral~a~kl~-~~~~~~i~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrI 464 (606)
..+++++|+.|| +++++|+|+++++|++ +|++||++++. +|.+| |.|++-+|.....+|+|+.||.|+|
T Consensus 23 ~~~rn~dp~lhPfe~~rEy~RALNAtKleR~fakPFv~~L~----gHrdG-----V~~lakhp~~ls~~aSGs~DG~Vki 93 (433)
T KOG0268|consen 23 RVPRNYDPALHPFERAREYTRALNATKLERVFAKPFVGSLD----GHRDG-----VSCLAKHPNKLSTVASGSCDGEVKI 93 (433)
T ss_pred ccccccCCcCChhhhHHHHHHHhhhHHHHHHhhccchhhcc----ccccc-----cchhhcCcchhhhhhccccCceEEE
Confidence 457899999999 9999999999999999 99999999994 66789 5678999966689999999999999
Q ss_pred EECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEcc
Q 035500 465 INHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS 544 (606)
Q Consensus 465 WDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp 544 (606)
||+.+..+...++ .|.+.|.+|++.. ..++++|.|.+|+.|.+.. .++.++.+++.+..|..+.
T Consensus 94 WnlsqR~~~~~f~--AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-----------~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 94 WNLSQRECIRTFK--AHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG-----------PPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred Eehhhhhhhheee--cccCceeeEEecc---cceEEecCCcceeeeeccC-----------Ccceeeecccccccccccc
Confidence 9999999888776 9999999999985 5689999999999999887 3788999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 545 TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 545 ~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
.++.|+|+|.+ |.|||.+...|+..+.+| ...|.+++|||....++++|++|+.|-
T Consensus 158 ~~~~FaTcGe~--i~IWD~~R~~Pv~smswG-~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 158 KNSVFATCGEQ--IDIWDEQRDNPVSSMSWG-ADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred ccccccccCce--eeecccccCCccceeecC-CCceeEEecCCCcchheeeeccCCceE
Confidence 99999999975 999999999999999985 588999999999999999999998775
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-22 Score=204.91 Aligned_cols=149 Identities=15% Similarity=0.193 Sum_probs=132.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|++|+| ++..+|+|+.|.+||+||..+..+..+.+ +|+.-|.+++|+| ++..|+||+.||+|++||..++.
T Consensus 118 Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~K--gH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpktg~--- 190 (480)
T KOG0271|consen 118 VLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCK--GHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQ--- 190 (480)
T ss_pred EEEEEecC-CCceEEecCCCceEEeeccCCCCcceeec--CCccEEEEEEECC-CcchhhccccCCeEEEecCCCCC---
Confidence 78999999 99999999999999999999888877665 9999999999999 67999999999999999999863
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccC-----CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNST-----DDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~-----g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
.-...+.+| ..|++++|+|- ..++|++|.||.|+|||+..+..+..+. ||+.+|+|++|-- ..++
T Consensus 191 ------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG--~gli 261 (480)
T KOG0271|consen 191 ------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGG--EGLI 261 (480)
T ss_pred ------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcC--CceE
Confidence 234556654 55999999974 4699999999999999999999999999 8999999999954 4479
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++||.|++||.
T Consensus 262 ySgS~DrtIkv 272 (480)
T KOG0271|consen 262 YSGSQDRTIKV 272 (480)
T ss_pred EecCCCceEEE
Confidence 99999999985
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-22 Score=209.29 Aligned_cols=149 Identities=18% Similarity=0.273 Sum_probs=137.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| ||.+++|||.|..-||||+++|+++-++. ||.++|.+++|+| ++..++|||.|++++|||++.
T Consensus 306 v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~--gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~----- 376 (459)
T KOG0272|consen 306 VFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLA--GHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRM----- 376 (459)
T ss_pred cceeEecC-CCceeeccCccchhheeecccCcEEEEec--ccccceeeEeECC-CceEEeecCCCCcEEEeeecc-----
Confidence 67899999 99999999999999999999999998776 9999999999999 778999999999999999998
Q ss_pred ccccCCcceEEeecCC-CeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFE-QLTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~-~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..++.++..|. -|+.|.|+| .|.+++|+|+|++++||..++..+++.+. ||.+.|.++.++|++.+ ++|+|
T Consensus 377 -----r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa-GHe~kV~s~Dis~d~~~-i~t~s 449 (459)
T KOG0272|consen 377 -----RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA-GHEGKVISLDISPDSQA-IATSS 449 (459)
T ss_pred -----cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc-CCccceEEEEeccCCce-EEEec
Confidence 55677777654 499999999 46899999999999999999999999999 89999999999999985 89999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|.++|.
T Consensus 450 ~DRT~KL 456 (459)
T KOG0272|consen 450 FDRTIKL 456 (459)
T ss_pred cCceeee
Confidence 9999984
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-23 Score=202.04 Aligned_cols=155 Identities=26% Similarity=0.389 Sum_probs=143.0
Q ss_pred hHHHHHHHHhhc-cceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccc
Q 035500 89 EYIMSLMHAIDQ-KLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDC 167 (606)
Q Consensus 89 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~ 167 (606)
|.+.+..+-+|. +=|.+|||+ +.+.-..+|++.-.+-++|||++|.++|+..+|+++|||||.|. +|+||+|.++.
T Consensus 7 el~~q~pqy~~~~~e~e~~LR~--lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~-nNrIt~I~p~L 83 (233)
T KOG1644|consen 7 ELIVQAPQYINSVRERELDLRG--LKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLN-NNRITRIDPDL 83 (233)
T ss_pred HHHhhchhhhhhcccccccccc--ccccchhhccccccccceecccccchhhcccCCCccccceEEec-CCcceeeccch
Confidence 333333333332 478999999 99999999999999999999999999999999999999999999 99999999999
Q ss_pred cccCccccEEEcccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhcc
Q 035500 168 FSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFR 247 (606)
Q Consensus 168 ~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (606)
-...|||..|.+++|+|.+| ++|.+|.++..|+
T Consensus 84 ~~~~p~l~~L~LtnNsi~~l----~dl~pLa~~p~L~------------------------------------------- 116 (233)
T KOG1644|consen 84 DTFLPNLKTLILTNNSIQEL----GDLDPLASCPKLE------------------------------------------- 116 (233)
T ss_pred hhhccccceEEecCcchhhh----hhcchhccCCccc-------------------------------------------
Confidence 99999999999999999999 9999998888777
Q ss_pred ccCcccchhhhcccchhhhhccCCCCCCCcceecccccCCCCCCCCcccccccccchhhhhhhccCCCCcccchhhHHHH
Q 035500 248 DADEVELPKYLRTMNLMELSSCLSPNLNGHAEMLDEVNDSNEFPGGAHKQDLMDANVKLKKYISHHPSPICFEKHYREYM 327 (606)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~L~~~l~~~~npi~~~~~YReyv 327 (606)
|+++++||++.+++||+||
T Consensus 117 -------------------------------------------------------------~Ltll~Npv~~k~~YR~yv 135 (233)
T KOG1644|consen 117 -------------------------------------------------------------YLTLLGNPVEHKKNYRLYV 135 (233)
T ss_pred -------------------------------------------------------------eeeecCCchhcccCceeEE
Confidence 9999999999999999999
Q ss_pred HhhCCCceeccCCCCCcchHHHHHHHh
Q 035500 328 IASLPQLEVLDNLPIGRLDREIAKSVF 354 (606)
Q Consensus 328 I~~Lp~LkvLD~~~i~~~eRe~A~~if 354 (606)
|+++|+|++||++.|+..||+.|...|
T Consensus 136 l~klp~l~~LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKVTRKEREEAEVFF 162 (233)
T ss_pred EEecCcceEeehhhhhHHHHHHHHHHh
Confidence 999999999999999999999999888
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-21 Score=213.40 Aligned_cols=149 Identities=15% Similarity=0.236 Sum_probs=138.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..+.|+| +.++|+++|.|++||+|.+.+..++-.++ ||..+|+.+.|+| .+-+|||||.|++-++|....
T Consensus 454 Vyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~--GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~----- 524 (707)
T KOG0263|consen 454 VYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYK--GHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDH----- 524 (707)
T ss_pred eeeeeecc-cccceeeccCCcceeeeecccceeEEEec--CCCcceeeEEecC-CceEEEecCCCceeeeeeccc-----
Confidence 78889999 88999999999999999999988877666 9999999999999 678999999999999999998
Q ss_pred ccccCCcceEEeecCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFE-QLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~-~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..|.+.+.+|- .|.|++|||+++++++||.|.+|++||+.+|..++.|. ||+++|.+++|+|.|.+ +|+|+.
T Consensus 525 -----~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~-LaSg~e 597 (707)
T KOG0263|consen 525 -----NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRY-LASGDE 597 (707)
T ss_pred -----CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCce-Eeeccc
Confidence 45788888764 49999999999999999999999999999999999999 89999999999999997 899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|..
T Consensus 598 d~~I~i 603 (707)
T KOG0263|consen 598 DGLIKI 603 (707)
T ss_pred CCcEEE
Confidence 999874
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-20 Score=184.39 Aligned_cols=148 Identities=14% Similarity=0.188 Sum_probs=130.7
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
.|..+..++ ++++.++|+.||++|+||+.+|+....+ .||...|.+++|+| +.+.++|||.|.+|++|+....
T Consensus 65 ~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f--~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~--- 137 (315)
T KOG0279|consen 65 FVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRF--VGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV--- 137 (315)
T ss_pred EecceEEcc-CCceEEeccccceEEEEEecCCcEEEEE--EecCCceEEEEecC-CCceeecCCCcceeeeeeeccc---
Confidence 366778999 9999999999999999999999776655 49999999999999 5689999999999999998873
Q ss_pred cccccCCcceEEeec---CCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 519 VADARGNSSVATYYD---FEQLTSVHVNST--DDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~---~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
+..+... .+.|.++.|+|. ..+++++|.|++|++||+++.+....+. ||++.++.++++|+|. +.
T Consensus 138 --------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGs-lc 207 (315)
T KOG0279|consen 138 --------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGS-LC 207 (315)
T ss_pred --------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCC-EE
Confidence 3444443 345999999999 5799999999999999999999999999 8999999999999998 79
Q ss_pred EEEeCCCeEE
Q 035500 594 LLLHLTTMSR 603 (606)
Q Consensus 594 aTgS~DgtIR 603 (606)
++|+.||.+-
T Consensus 208 asGgkdg~~~ 217 (315)
T KOG0279|consen 208 ASGGKDGEAM 217 (315)
T ss_pred ecCCCCceEE
Confidence 9999999764
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-20 Score=189.83 Aligned_cols=149 Identities=17% Similarity=0.313 Sum_probs=137.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+|+++.| ...++++|+.|++|+|||+.+|+...++. ||...|.++++++ ...+++|++.|+.|+.||+..
T Consensus 154 Vr~vavdP-~n~wf~tgs~DrtikIwDlatg~Lkltlt--Ghi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~----- 224 (460)
T KOG0285|consen 154 VRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLT--GHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEY----- 224 (460)
T ss_pred EEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeec--chhheeeeeeecc-cCceEEEecCCCeeEEEechh-----
Confidence 99999999 67899999999999999999999988765 9999999999998 567999999999999999998
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.+-++.+.+| +.|.+++.||.-..+++||.|.++++||+|+...+.++. ||+.+|.+|.+.|..+. ++|||.
T Consensus 225 -----nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dpq-vit~S~ 297 (460)
T KOG0285|consen 225 -----NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDPQ-VITGSH 297 (460)
T ss_pred -----hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCCc-eEEecC
Confidence 4567777766 559999999999999999999999999999999999999 89999999999999986 789999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++||.
T Consensus 298 D~tvrl 303 (460)
T KOG0285|consen 298 DSTVRL 303 (460)
T ss_pred CceEEE
Confidence 999984
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=201.29 Aligned_cols=150 Identities=15% Similarity=0.198 Sum_probs=136.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+++++.||+.+ ++.|+|+|-+|++||++. ..+..+++ ||...|.+++|+|.+++.++|||.|+|||+|.+.+
T Consensus 100 IR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfe--GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs---- 172 (794)
T KOG0276|consen 100 IRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFE--GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS---- 172 (794)
T ss_pred eeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEc--CcceEEEEEEecCCCccceeeeeccccEEEEEcCC----
Confidence 89999999666 899999999999999986 34555555 99999999999999999999999999999999998
Q ss_pred cccccCCcceEEeecCCC-eEEEEEccCC--CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYYDFEQ-LTSVHVNSTD--DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~-V~sV~~sp~g--~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
..|..++++|.. |++|.+-+.| .+++||++|.++++||..+..++++++ ||+..|..+.|+|.-+ +++|
T Consensus 173 ------~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lp-iiis 244 (794)
T KOG0276|consen 173 ------PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELP-IIIS 244 (794)
T ss_pred ------CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCc-EEEE
Confidence 567888997655 9999998776 599999999999999999999999999 8999999999999998 7999
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
||+||++|+
T Consensus 245 gsEDGTvri 253 (794)
T KOG0276|consen 245 GSEDGTVRI 253 (794)
T ss_pred ecCCccEEE
Confidence 999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-21 Score=196.43 Aligned_cols=149 Identities=17% Similarity=0.201 Sum_probs=130.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+++.|++ ++.++++|+.+|.|++|+..-. .+..+. ..|..+|.+++|+| ++.+|+|||+||+|+|||....+
T Consensus 141 Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmn-nVk~~~-ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~k--- 213 (464)
T KOG0284|consen 141 VRTMKWSH-NGTWMISGDKGGMIKYWQPNMN-NVKIIQ-AHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPK--- 213 (464)
T ss_pred ceeEEEcc-CCCEEEEcCCCceEEecccchh-hhHHhh-HhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCc---
Confidence 89999999 9999999999999999997643 333333 14458999999999 67899999999999999999842
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
....+.+|+. |.+++|||...++++||.|+.|++||.++++++.++. +|+..|..+.|+|++.+ |+|+|.
T Consensus 214 -------ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N~-Llt~sk 284 (464)
T KOG0284|consen 214 -------EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGNW-LLTGSK 284 (464)
T ss_pred -------hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCCe-eEEccC
Confidence 3445566655 9999999999999999999999999999999999999 79999999999999975 899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.++.
T Consensus 285 D~~~kv 290 (464)
T KOG0284|consen 285 DQSCKV 290 (464)
T ss_pred CceEEE
Confidence 998875
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=179.00 Aligned_cols=152 Identities=18% Similarity=0.280 Sum_probs=126.8
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-----------------------------------------
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP----------------------------------------- 477 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~----------------------------------------- 477 (606)
||.++.|++ |.++++++|.||.+.|||.-+...+..++
T Consensus 57 Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~ 135 (343)
T KOG0286|consen 57 KIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNV 135 (343)
T ss_pred ceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccc
Confidence 477777777 77777777777777777754433322111
Q ss_pred -----ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCC-eEEEEEcc-CCCEEE
Q 035500 478 -----SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNS-TDDQFL 550 (606)
Q Consensus 478 -----~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp-~g~~La 550 (606)
+.+|++.+.+..|.+ ...|+|+|.|.+..+||++++ ..+..|.+|.. |.+++++| ++++|+
T Consensus 136 ~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g----------~~~~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETG----------QQTQVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred eeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccc----------eEEEEecCCcccEEEEecCCCCCCeEE
Confidence 357999999999985 468999999999999999994 45778887654 99999999 789999
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 551 ASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 551 Sgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
||+-|++.++||+|.+..++.|+ +|.+.|++|+|.|+|- -|+|||.|++.|+.
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~-afatGSDD~tcRly 256 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGD-AFATGSDDATCRLY 256 (343)
T ss_pred ecccccceeeeeccCcceeEeec-ccccccceEEEccCCC-eeeecCCCceeEEE
Confidence 99999999999999999999999 8999999999999997 49999999999973
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-20 Score=204.05 Aligned_cols=149 Identities=14% Similarity=0.172 Sum_probs=137.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..+.|+| .|-++||||.|++-++|........+.+. ||-+.|.|+.|+| +..++++||.|.+|++||+.++
T Consensus 496 VwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifa--ghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G---- 567 (707)
T KOG0263|consen 496 VWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFA--GHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTG---- 567 (707)
T ss_pred eeeEEecC-CceEEEecCCCceeeeeecccCCchhhhc--ccccccceEEECC-cccccccCCCCceEEEEEcCCC----
Confidence 77888999 89999999999999999998877777654 9999999999999 7899999999999999999994
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++.|.+ +.+|.+++|+|+|.++++|+.||.|++||+.+++.+..+. +|++.|+++.|+.+|. +||+||.
T Consensus 568 ------~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~dg~-vLasgg~ 639 (707)
T KOG0263|consen 568 ------NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-GHTGTIYSLSFSRDGN-VLASGGA 639 (707)
T ss_pred ------cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-cccCceeEEEEecCCC-EEEecCC
Confidence 56888885 5679999999999999999999999999999999999999 7999999999999998 7999999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|.+||.
T Consensus 640 DnsV~l 645 (707)
T KOG0263|consen 640 DNSVRL 645 (707)
T ss_pred CCeEEE
Confidence 999984
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=196.69 Aligned_cols=151 Identities=23% Similarity=0.320 Sum_probs=137.5
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
.++.+++++| ||+++|||+.||.|+|||..+|-+..++. .|++.|++++|+. .+.-++|.|.||+|+.||+..
T Consensus 351 ~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFt--eHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkR--- 423 (893)
T KOG0291|consen 351 DRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFT--EHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKR--- 423 (893)
T ss_pred cceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEec--cCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecc---
Confidence 3588999999 99999999999999999999999998877 9999999999997 678899999999999999987
Q ss_pred CcccccCCcceEEeecCCC--eEEEEEccCCCEEEEEeCCC-cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 518 KVADARGNSSVATYYDFEQ--LTSVHVNSTDDQFLASGYSK-NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~--V~sV~~sp~g~~LaSgs~Dg-~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
....++|....+ ..+++..|.|.++.+|+.|. .|.+|++.+|+.+..+. ||.++|.+++|+|.+. ++|
T Consensus 424 -------YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~~-~La 494 (893)
T KOG0291|consen 424 -------YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDGS-LLA 494 (893)
T ss_pred -------cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEccccC-eEE
Confidence 346777776555 67888899999999999884 69999999999999999 8999999999999998 699
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+||+|.+||.
T Consensus 495 S~SWDkTVRi 504 (893)
T KOG0291|consen 495 SGSWDKTVRI 504 (893)
T ss_pred eccccceEEE
Confidence 9999999995
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-21 Score=185.84 Aligned_cols=146 Identities=29% Similarity=0.413 Sum_probs=72.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.|+|+++|++ .++..+++|.+.=..-++|||+.|.|.+++.++.+++|++|+|+ +|+|+++.+.+..++|+|+.|+|
T Consensus 19 ~~~~~L~L~~--n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~-~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRG--NQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLS-NNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE---SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccc--cccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccC-CCCCCccccchHHhCCcCCEEEC
Confidence 4789999999 78888999986444567899999999999999999999999999 99999998766678999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhc
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLR 259 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (606)
.+|+|.++ ..+..|++||+|+
T Consensus 96 ~~N~I~~l-~~l~~L~~l~~L~---------------------------------------------------------- 116 (175)
T PF14580_consen 96 SNNKISDL-NELEPLSSLPKLR---------------------------------------------------------- 116 (175)
T ss_dssp TTS---SC-CCCGGGGG-TT------------------------------------------------------------
T ss_pred cCCcCCCh-HHhHHHHcCCCcc----------------------------------------------------------
Confidence 99999986 6666666666666
Q ss_pred ccchhhhhccCCCCCCCcceecccccCCCCCCCCcccccccccchhhhhhhccCCCCcccchhhHHHHHhhCCCceeccC
Q 035500 260 TMNLMELSSCLSPNLNGHAEMLDEVNDSNEFPGGAHKQDLMDANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDN 339 (606)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~L~~~l~~~~npi~~~~~YReyvI~~Lp~LkvLD~ 339 (606)
++++.+||||..++||.|||+.+|+|++||+
T Consensus 117 -------------------------------------------------~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 117 -------------------------------------------------VLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -------------------------------------------------EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred -------------------------------------------------eeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 5568999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHhhh
Q 035500 340 LPIGRLDREIAKSVFAR 356 (606)
Q Consensus 340 ~~i~~~eRe~A~~ifS~ 356 (606)
.+|++.||..|...|..
T Consensus 148 ~~V~~~ER~~A~~~f~~ 164 (175)
T PF14580_consen 148 QDVTEEERQEAEKLFKG 164 (175)
T ss_dssp EETTS-B----------
T ss_pred EEccHHHhccccccccc
Confidence 99999999999988873
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=185.55 Aligned_cols=159 Identities=17% Similarity=0.210 Sum_probs=133.4
Q ss_pred eeEEEEcC----CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNP----SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP----~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+.+++|.| ....++|+++.||.|+|||+..+.++..+. ||+.+|+|++|- +.++++|||.|++|++|+...+
T Consensus 203 It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls--gHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 203 ITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS--GHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred eeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec--cCccceEEEEEc--CCceEEecCCCceEEEEEccch
Confidence 67889977 356799999999999999999999887665 999999999997 4579999999999999998653
Q ss_pred CCC---------c------------------------------------------------------------ccccCCc
Q 035500 516 PPK---------V------------------------------------------------------------ADARGNS 526 (606)
Q Consensus 516 ~~~---------~------------------------------------------------------------~~l~~~~ 526 (606)
..- + ++...++
T Consensus 279 ~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 279 KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence 110 0 0001123
Q ss_pred ceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 527 SVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 527 ~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|+....+|.+ |+.+.|+|++.++||+|-|+.|++||.++|+-+..|. ||-..|+.++|+.+++ ++++||.|.+++.
T Consensus 359 pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR-GHv~~VYqvawsaDsR-LlVS~SkDsTLKv 435 (480)
T KOG0271|consen 359 PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR-GHVAAVYQVAWSADSR-LLVSGSKDSTLKV 435 (480)
T ss_pred chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh-hccceeEEEEeccCcc-EEEEcCCCceEEE
Confidence 4444455555 9999999999999999999999999999999999999 8999999999999987 7999999999885
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-19 Score=177.64 Aligned_cols=150 Identities=15% Similarity=0.207 Sum_probs=139.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++++|.+++.+++|+-|+..++||++.+.++.+|. ||.+-|.+++|.| ++.-|+|||+|++.++||++.
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~--ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRa----- 260 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE--GHESDINSVRFFP-SGDAFATGSDDATCRLYDLRA----- 260 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCcceeEeec--ccccccceEEEcc-CCCeeeecCCCceeEEEeecC-----
Confidence 88999999999999999999999999999999999877 9999999999999 678899999999999999998
Q ss_pred ccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...+..|.+. .+|++|+|+..|+++++|..|.++.+||.-.++.+-.+. ||.++|.++..+|+|. .++||
T Consensus 261 -----D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG~-av~Tg 333 (343)
T KOG0286|consen 261 -----DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA-GHENRVSCLGVSPDGM-AVATG 333 (343)
T ss_pred -----CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee-ccCCeeEEEEECCCCc-EEEec
Confidence 4567777753 559999999999999999999999999999999999999 8999999999999998 59999
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
|+|.++|+
T Consensus 334 SWDs~lri 341 (343)
T KOG0286|consen 334 SWDSTLRI 341 (343)
T ss_pred chhHheee
Confidence 99999985
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=192.60 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=127.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE-----EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA-----CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v-----~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
|.+++|+|.++++||+|+.||+|++||+.++... ....+.+|...|.+++|+|..+.+|+||+.|++|++||+..
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t 157 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER 157 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence 8899999988889999999999999999765321 12234599999999999996667999999999999999987
Q ss_pred CCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC-eEEEEEeCCCCeE
Q 035500 515 IPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP-INVAKFSHHSPLC 592 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~-I~sV~fsP~g~~L 592 (606)
+ ..+..+.. ...|.+++|+|++.++++++.|++|++||+++++.+..+. +|.+. +..+.|.|++..+
T Consensus 158 g----------~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 158 G----------KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred C----------eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcCCCCeE
Confidence 3 45566664 5669999999999999999999999999999999998888 78765 4567899988876
Q ss_pred EEEE---eCCCeEEE
Q 035500 593 LLLL---HLTTMSRC 604 (606)
Q Consensus 593 LaTg---S~DgtIRc 604 (606)
+++| +.|+.|+.
T Consensus 227 vt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 227 ITLGCSKSQQRQIML 241 (493)
T ss_pred EEEecCCCCCCeEEE
Confidence 6555 34777764
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-20 Score=190.92 Aligned_cols=150 Identities=17% Similarity=0.228 Sum_probs=136.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +...++++|.||+|+|||....+....+ .||.-.|.++.|+|. -++++|||.|..|++||.++
T Consensus 183 IRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL--~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDprS----- 253 (464)
T KOG0284|consen 183 IRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVL--RGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPRS----- 253 (464)
T ss_pred hheeccCC-CCceeEEecCCCeEEEEeccCCchhhee--ccCCCCcceeccCCc-cceeEEccCCceeEeecCCC-----
Confidence 88999999 6679999999999999998877766655 499999999999994 57999999999999999999
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++.++.+| ..|..+.|+|++++++|+|.|..++++|+|+.+.++.++ +|+..|+++.|+|-.+.+|++|+.
T Consensus 254 -----g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 254 -----GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred -----cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccC
Confidence 4678888755 559999999999999999999999999999988899999 899999999999999999999999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
||.|.-
T Consensus 328 Dgsvvh 333 (464)
T KOG0284|consen 328 DGSVVH 333 (464)
T ss_pred CCceEE
Confidence 998753
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=192.45 Aligned_cols=149 Identities=18% Similarity=0.350 Sum_probs=132.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEC-CCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINH-ENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi-~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|+.++|+| ++.++++|+.|++|+|||+ ..+....++. ||...|++++|+|.+ ++++||+.|++|++||+++
T Consensus 206 v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~--gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~---- 277 (456)
T KOG0266|consen 206 VSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLK--GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT---- 277 (456)
T ss_pred eeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEec--CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccC----
Confidence 88999999 9999999999999999999 4457777666 999999999999965 9999999999999999998
Q ss_pred cccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeEEEcCCCCCC--eEEEEEeCCCCeEE
Q 035500 519 VADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEK--PLQLFTDMHREP--INVAKFSHHSPLCL 593 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k--~v~~l~~gH~~~--I~sV~fsP~g~~LL 593 (606)
..++..+.+| ++|++++|+++++.+++++.|+.|++||+.++. ++..+. ++... +++++|+|++.+ +
T Consensus 278 ------~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~fsp~~~~-l 349 (456)
T KOG0266|consen 278 ------GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLS-GAENSAPVTSVQFSPNGKY-L 349 (456)
T ss_pred ------CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeeccc-CCCCCCceeEEEECCCCcE-E
Confidence 4578888865 569999999999999999999999999999998 567777 45555 999999999996 7
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++++.|++++.
T Consensus 350 l~~~~d~~~~~ 360 (456)
T KOG0266|consen 350 LSASLDRTLKL 360 (456)
T ss_pred EEecCCCeEEE
Confidence 78889988875
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=171.63 Aligned_cols=152 Identities=16% Similarity=0.282 Sum_probs=133.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG--NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg--~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
||+++|+| .|++||+||.|.++-||.-..+ +++..+ .||...|.+++|++ ++++||+||+|++|-||.+.....
T Consensus 64 VRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~l--EGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 64 VRSVAWSP-HGRYLASASFDATVVIWKKEDGEFECVATL--EGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred eeeeeecC-CCcEEEEeeccceEEEeecCCCceeEEeee--eccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCc
Confidence 89999999 9999999999999999987754 445544 49999999999998 789999999999999999986432
Q ss_pred CcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCC---ceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 518 KVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTE---KPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~---k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
..+...++.|.+ |..+.|||...+|+|+|+|++|++|.-..+ .+++++. +|.+.|++++|+|.|.. +
T Consensus 140 -------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~r-l 210 (312)
T KOG0645|consen 140 -------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSR-L 210 (312)
T ss_pred -------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCce-E
Confidence 467778887766 999999999999999999999999987733 5688898 89999999999999975 8
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++++.|++|++
T Consensus 211 ~s~sdD~tv~I 221 (312)
T KOG0645|consen 211 VSCSDDGTVSI 221 (312)
T ss_pred EEecCCcceEe
Confidence 99999999986
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=191.43 Aligned_cols=150 Identities=20% Similarity=0.273 Sum_probs=133.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc--eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN--VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~--~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.++.|+| +|+.+++++.|+.+++|+..+++ ..... .+|...|.+++|+| ++..+++|+.|++|++||+...
T Consensus 162 v~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~-- 235 (456)
T KOG0266|consen 162 VTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDD-- 235 (456)
T ss_pred eEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccc--cccccceeeeEECC-CCcEEEEecCCceEEEeeccCC--
Confidence 77889999 99999999999999999997766 33333 59999999999999 6689999999999999999542
Q ss_pred CcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 518 KVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...++++.+| ..|++++|+|+++++++|+.|++|+|||+++++++..+. +|.+.|++++|++++.. ++++
T Consensus 236 -------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d~~~-l~s~ 306 (456)
T KOG0266|consen 236 -------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPDGNL-LVSA 306 (456)
T ss_pred -------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCCCCE-EEEc
Confidence 3567888765 559999999999999999999999999999999999999 89999999999999985 7788
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|++||.
T Consensus 307 s~d~~i~v 314 (456)
T KOG0266|consen 307 SYDGTIRV 314 (456)
T ss_pred CCCccEEE
Confidence 99999986
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.3e-18 Score=189.13 Aligned_cols=148 Identities=13% Similarity=0.133 Sum_probs=119.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-E-----EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-A-----CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-v-----~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
|.+++|+|.++++||+|+.||+|+|||+.++.. . ....+.+|.+.|.+++|+|.+...++|||.|++|++||++
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~ 156 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE 156 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC
Confidence 889999996689999999999999999976421 1 1113458999999999999655567899999999999999
Q ss_pred CCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEE-----EEeCC
Q 035500 514 HIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVA-----KFSHH 588 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV-----~fsP~ 588 (606)
.+ ..+..+.++..|.+++|+|+|.++++++.|++|+|||+++++.+..+. +|.+.+.+. .|+++
T Consensus 157 tg----------~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 157 NE----------KRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-IHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred CC----------cEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe-cccCCceeEEEEeeeEcCC
Confidence 84 344556667789999999999999999999999999999999999998 798765443 35578
Q ss_pred CCeEEEEEeCC
Q 035500 589 SPLCLLLLHLT 599 (606)
Q Consensus 589 g~~LLaTgS~D 599 (606)
+.+++ |+|.|
T Consensus 226 ~~~Il-TtG~d 235 (568)
T PTZ00420 226 DNYIL-STGFS 235 (568)
T ss_pred CCEEE-EEEcC
Confidence 88654 54444
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=172.34 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=135.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++.|++.....++++|.||+|++|+...+..+.++. ||..-|++.+|+|..++.++|+|.|+++++||++...
T Consensus 107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~--gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--- 181 (311)
T KOG0277|consen 107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN--GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--- 181 (311)
T ss_pred eEEeccccccceeEEeeccCCceEeecCCCCcceEeec--CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC---
Confidence 78899999999999999999999999998888888765 9999999999999999999999999999999999852
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
+.....-|...+.++.|+.-. +.++||+.|+.|+.||+|+- .++.++. +|.-+|..|+|+|....++|++|
T Consensus 182 ------k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~lLaSas 254 (311)
T KOG0277|consen 182 ------KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASLLASAS 254 (311)
T ss_pred ------ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeec-CCceEEEEEecCcchhhHhhhcc
Confidence 233333344579999999765 69999999999999999975 5688886 89999999999999999999999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|-++|+
T Consensus 255 YDmT~ri 261 (311)
T KOG0277|consen 255 YDMTVRI 261 (311)
T ss_pred ccceEEe
Confidence 9999986
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=170.64 Aligned_cols=152 Identities=13% Similarity=0.171 Sum_probs=132.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+-.++|++...+.+++++.||.+++||... ..++. .+..|+..|.++.|++.....++++|.|++||+|+..-
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~--~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r---- 136 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIH--KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR---- 136 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchh--HHHhhhhheEEeccccccceeEEeeccCCceEeecCCC----
Confidence 446889999999999999999999999542 23333 44589999999999998888899999999999999987
Q ss_pred cccccCCcceEEeecCCC-eEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVATYYDFEQ-LTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~-V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+..+.++.+|.. |...+|||.. ++|+++|.|+++++||+|..-....++ +|...|.++.|+.....+++||
T Consensus 137 ------~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 137 ------PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ------CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEec
Confidence 567889998766 9999999985 899999999999999999654444488 7999999999999999999999
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|+.||+
T Consensus 210 ~vd~~vr~ 217 (311)
T KOG0277|consen 210 GVDNLVRG 217 (311)
T ss_pred CCCceEEE
Confidence 99999997
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=189.64 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=137.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|++++| +..++||||.|++.+||+++......++. ||+..|+++.|+| ++..++|+|.|+|||||.+.+
T Consensus 466 IN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLs--GH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~----- 536 (775)
T KOG0319|consen 466 INCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLS--GHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSIST----- 536 (775)
T ss_pred ccceEecC-CCceEEecccccceeeecccCceEEEEee--CCccceEEEEecc-ccceeEeccCCceEEEEEecc-----
Confidence 78999999 77899999999999999999888877766 9999999999998 668999999999999999999
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++.++.+| .+|..++|-.+|..++|++.||-+++|++.+++++.++. +|.+.|++++-+|.+. +++||+.
T Consensus 537 -----fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-~H~DrvWaL~~~~~~~-~~~tgg~ 609 (775)
T KOG0319|consen 537 -----FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-AHNDRVWALSVSPLLD-MFVTGGG 609 (775)
T ss_pred -----ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-hccceeEEEeecCccc-eeEecCC
Confidence 6799999965 559999999999999999999999999999999999999 8999999999999988 6899999
Q ss_pred CCeEE
Q 035500 599 TTMSR 603 (606)
Q Consensus 599 DgtIR 603 (606)
|+.|-
T Consensus 610 Dg~i~ 614 (775)
T KOG0319|consen 610 DGRII 614 (775)
T ss_pred CeEEE
Confidence 99874
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-18 Score=178.36 Aligned_cols=151 Identities=21% Similarity=0.345 Sum_probs=130.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe---------------------------------------ccC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP---------------------------------------SIG 480 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~---------------------------------------~~g 480 (606)
|.++.|+. .|++|++|+.||++.+||..+|.....+. +.|
T Consensus 279 I~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G 357 (524)
T KOG0273|consen 279 IFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG 357 (524)
T ss_pred eEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec
Confidence 77899999 99999999999999999987766544332 357
Q ss_pred CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCC-CeEEEEEccCC---------CEEE
Q 035500 481 GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFE-QLTSVHVNSTD---------DQFL 550 (606)
Q Consensus 481 H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~-~V~sV~~sp~g---------~~La 550 (606)
|.++|.++.|+| .+.+|+|||+|+|++||.... ..+...+..|. .|..+.|+|+| ..++
T Consensus 358 H~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~----------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 358 HHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQ----------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred ccCceEEEEECC-CCceEEEecCCCeeEeeecCC----------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence 999999999999 678999999999999999877 34556666554 59999999874 3899
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 551 ASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 551 Sgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+++.|++|++||+..+.++..|. .|+.+|++++|+|+|.+ +|+|+.||.|..
T Consensus 427 sas~dstV~lwdv~~gv~i~~f~-kH~~pVysvafS~~g~y-lAsGs~dg~V~i 478 (524)
T KOG0273|consen 427 SASFDSTVKLWDVESGVPIHTLM-KHQEPVYSVAFSPNGRY-LASGSLDGCVHI 478 (524)
T ss_pred EeecCCeEEEEEccCCceeEeec-cCCCceEEEEecCCCcE-EEecCCCCeeEe
Confidence 99999999999999999999998 69999999999999996 899999998864
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=182.07 Aligned_cols=174 Identities=21% Similarity=0.311 Sum_probs=141.7
Q ss_pred eeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCC--------ceEEEEeccCCCCCEEEEEEeeCC
Q 035500 423 PVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENG--------NVACYIPSIGGTNSVLGLCWLKKY 494 (606)
Q Consensus 423 ~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg--------~~v~~~~~~gH~~~V~~L~fsp~~ 494 (606)
.+++...+.|+|+ ++|++ +.|+++.++|+++..+.|.|||..+. .+...+.+.||.+.-++++|++..
T Consensus 114 ~v~i~~~i~h~gE-VnRaR---ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 114 KVEISQKINHDGE-VNRAR---YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred ceEEEEeccCCcc-chhhh---hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccc
Confidence 4444456668888 45555 99999999999999999999997652 222334567999999999999988
Q ss_pred CCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECC--CCceeE
Q 035500 495 PSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDIN--TEKPLQ 570 (606)
Q Consensus 495 ~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlr--t~k~v~ 570 (606)
...++||+.|++|++||++....... ...+...+.+| ..|..|+||+.. .+|+++++|+.+.|||+| +.++..
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~---~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDK---VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCc---cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc
Confidence 89999999999999999998543211 12355566655 559999999986 699999999999999999 556666
Q ss_pred EEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 571 LFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 571 ~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
... +|++.|+|++|+|.+.+++||||.|++|+.
T Consensus 267 ~~~-ah~~~vn~~~fnp~~~~ilAT~S~D~tV~L 299 (422)
T KOG0264|consen 267 SVK-AHSAEVNCVAFNPFNEFILATGSADKTVAL 299 (422)
T ss_pred ccc-ccCCceeEEEeCCCCCceEEeccCCCcEEE
Confidence 666 899999999999999999999999999975
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-18 Score=177.04 Aligned_cols=157 Identities=17% Similarity=0.269 Sum_probs=135.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE-EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA-CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v-~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
-..++|||.....+++|.--+.|++|...+|... ...++.+|+.+|-+|+|+|...+.|+|||.||+|+|||++.+..
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~- 292 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK- 292 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-
Confidence 3578999977778899999999999999887653 34456799999999999998888999999999999999999643
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC---CceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINT---EKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt---~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
+.++.+-.|.+.|+-|+|+..-.++|+|++||+++|||+|+ ++++..|++ |+.+|++|.|+|....++++
T Consensus 293 ------~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-Hk~pItsieW~p~e~s~iaa 365 (440)
T KOG0302|consen 293 ------KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY-HKAPITSIEWHPHEDSVIAA 365 (440)
T ss_pred ------cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe-ccCCeeEEEeccccCceEEe
Confidence 45566645667799999999888999999999999999995 578999994 99999999999999999999
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
+|.|..|..
T Consensus 366 sg~D~Qiti 374 (440)
T KOG0302|consen 366 SGEDNQITI 374 (440)
T ss_pred ccCCCcEEE
Confidence 999988753
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=163.81 Aligned_cols=154 Identities=15% Similarity=0.213 Sum_probs=132.4
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCC---ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENG---NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg---~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
|+..++|||..|.+||+||.|+.||||+...+ .+...+. .+|+..|..++|+| .+++|++||.|.++.||.-...
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld-~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD-DGHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc-ccchheeeeeeecC-CCcEEEEeeccceEEEeecCCC
Confidence 58999999955889999999999999998853 2333332 38999999999999 5689999999999999987754
Q ss_pred CCCcccccCCcceEEeecCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCC---ceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 516 PPKVADARGNSSVATYYDFE-QLTSVHVNSTDDQFLASGYSKNVALYDINTE---KPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~-~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~---k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
. .+++.++.+|. .|.+|+|+++|++||++|.|+.|=||.+..+ +....++ +|+..|..+.|+|...
T Consensus 94 e--------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt~d- 163 (312)
T KOG0645|consen 94 E--------FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPTED- 163 (312)
T ss_pred c--------eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCCcc-
Confidence 3 46788998764 4999999999999999999999999998854 4577788 7999999999999887
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
+|+++|+|.+||.
T Consensus 164 lL~S~SYDnTIk~ 176 (312)
T KOG0645|consen 164 LLFSCSYDNTIKV 176 (312)
T ss_pred eeEEeccCCeEEE
Confidence 7999999999985
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=164.36 Aligned_cols=150 Identities=17% Similarity=0.240 Sum_probs=123.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..+++.| ++..||+|+.-. ||+||++++...+...+.+|++.|..+.|.- ++++++|||+||++||||++.
T Consensus 43 VNrLeiTp-dk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~----- 114 (311)
T KOG0315|consen 43 VNRLEITP-DKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRS----- 114 (311)
T ss_pred eeeEEEcC-CcchhhhccCCe-eEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccC-----
Confidence 88899999 888999888655 9999999987766566669999999999996 789999999999999999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC---------------------------------
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE--------------------------------- 566 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~--------------------------------- 566 (606)
..+.+.+++..+|++|..||....+++|..+|.|++||++..
T Consensus 115 -----~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG 189 (311)
T KOG0315|consen 115 -----LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKG 189 (311)
T ss_pred -----cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCc
Confidence 345556666777777777777777777777777777777653
Q ss_pred ----------------ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 567 ----------------KPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 567 ----------------k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+++..++ +|.+.+....++|++++ +||+|.|.++++
T Consensus 190 ~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~-lat~ssdktv~i 241 (311)
T KOG0315|consen 190 NCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVKY-LATCSSDKTVKI 241 (311)
T ss_pred cEEEEEccCCCccccceEhhhee-cccceEEEEEECCCCcE-EEeecCCceEEE
Confidence 1224455 79999999999999996 899999999986
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-18 Score=169.31 Aligned_cols=150 Identities=22% Similarity=0.281 Sum_probs=138.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..+.|++ +++.++++|.|.+|+.||+++|+.+..++ +|.+-|..+.-...+..++.||+.||++++||+++
T Consensus 93 VM~l~~~~-d~s~i~S~gtDk~v~~wD~~tG~~~rk~k--~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~----- 164 (338)
T KOG0265|consen 93 VMELHGMR-DGSHILSCGTDKTVRGWDAETGKRIRKHK--GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK----- 164 (338)
T ss_pred eEeeeecc-CCCEEEEecCCceEEEEecccceeeehhc--cccceeeecCccccCCeEEEecCCCceEEEEeecc-----
Confidence 77889999 99999999999999999999999988655 99999999986655677899999999999999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
+.+++++..+.+++++.|..++..+++|+-|+.|++||+|.+....++. ||...|+.+..+|.|.+ +.+-+.|
T Consensus 165 -----k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~-llsnsMd 237 (338)
T KOG0265|consen 165 -----KEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGSF-LLSNSMD 237 (338)
T ss_pred -----cchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEee-cccCceeeEEeccCCCc-ccccccc
Confidence 6788899999999999999999999999999999999999999999999 89999999999999997 6789999
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
.++|.
T Consensus 238 ~tvrv 242 (338)
T KOG0265|consen 238 NTVRV 242 (338)
T ss_pred ceEEE
Confidence 99885
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=165.52 Aligned_cols=141 Identities=15% Similarity=0.140 Sum_probs=119.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| |...+++|+.|.+|++||+.. .+.-++...+|++-|.+++|+|.. ..+++++|.|++||+||++..
T Consensus 108 Vlsva~s~-dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~--- 182 (315)
T KOG0279|consen 108 VLSVAFST-DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC--- 182 (315)
T ss_pred eEEEEecC-CCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc---
Confidence 88999999 888999999999999999874 444444444558899999999953 568999999999999999983
Q ss_pred cccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
+....+.+| +.++.+.++|+|.+.++||.||.+.+||++.++.+..+. |...|++++|+|...++.+
T Consensus 183 -------~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--a~~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 183 -------QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--AFDIVNSLCFSPNRYWLCA 250 (315)
T ss_pred -------chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc--CCCeEeeEEecCCceeEee
Confidence 233445544 559999999999999999999999999999999988887 7899999999999876443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=185.95 Aligned_cols=153 Identities=19% Similarity=0.298 Sum_probs=130.2
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-------------------------------ceE-------
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENG-------------------------------NVA------- 473 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg-------------------------------~~v------- 473 (606)
|+|. |.++.||+ ||.|||+||.||.||||.+... +..
T Consensus 266 h~ga----Iw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 266 HKGA----IWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred cCCc----EEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 5565 88999999 9999999999999999986440 000
Q ss_pred --------------------EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec
Q 035500 474 --------------------CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD 533 (606)
Q Consensus 474 --------------------~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~ 533 (606)
+...+.||.+.|.+|.|+.. +.|+|+|.|.|||+|++.. +.|+.+|.|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~----------~~CL~~F~H 408 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGR----------KECLKVFSH 408 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCC----------cceeeEEec
Confidence 00014689999999999963 6899999999999999997 689999999
Q ss_pred CCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 534 FEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 534 ~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+-|+||+|||.+ ++|+||+-||+|+||++...+.+.-.. . ..-|++++|.|+|++ .+.|+.+|.+|.
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l-~~lITAvcy~PdGk~-avIGt~~G~C~f 477 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-L-RDLITAVCYSPDGKG-AVIGTFNGYCRF 477 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-h-hhhheeEEeccCCce-EEEEEeccEEEE
Confidence 9999999999975 799999999999999999887776555 3 489999999999986 789999998874
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=174.30 Aligned_cols=155 Identities=14% Similarity=0.210 Sum_probs=131.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..++|+|.+.+++++++.|+.+.|||.+++.........+|.+.|++++|+|.++..|||||.|++|++||+|..
T Consensus 230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL---- 305 (422)
T KOG0264|consen 230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL---- 305 (422)
T ss_pred eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc----
Confidence 7788999999999999999999999999953222222345999999999999999999999999999999999996
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCc--------------eeEEEcCCCCCCeEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTEK--------------PLQLFTDMHREPINVA 583 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k--------------~v~~l~~gH~~~I~sV 583 (606)
..++.++.+| ..|..|.|+|.. ..+||+|.|+.+.+||+..-. ++..-. ||+..|..+
T Consensus 306 -----~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~Hg-GH~~kV~Df 379 (422)
T KOG0264|consen 306 -----NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG-GHTAKVSDF 379 (422)
T ss_pred -----ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEec-Ccccccccc
Confidence 3477788765 559999999996 689999999999999998521 123344 899999999
Q ss_pred EEeCCCCeEEEEEeCCCeEEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|+|..++++++.+.|++..+
T Consensus 380 sWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 380 SWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred cCCCCCCeEEEEecCCceEEE
Confidence 999999999999999988753
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-17 Score=171.87 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=134.3
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC--------CCEEEEEEC
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY--------PSKLVAGSD 503 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~--------~~~LaSgS~ 503 (606)
|+|+ |.++.|+| .+.+|+++|+|++++||....+.....+ .+|...|+.+.|+|.+ +..+++++.
T Consensus 358 H~g~----V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l--~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ 430 (524)
T KOG0273|consen 358 HHGE----VNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDL--QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF 430 (524)
T ss_pred ccCc----eEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhh--hhhccceeeEeecCCCCccCCCcCCceEEEeec
Confidence 4566 88999999 8999999999999999998887777654 4999999999999864 346999999
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV 582 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s 582 (606)
|++|++||+.. ..|+.+| +|..+|.+++|+|+|.++|+|+.||.|.||++++++.++.... .+.|..
T Consensus 431 dstV~lwdv~~----------gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--~~~Ife 498 (524)
T KOG0273|consen 431 DSTVKLWDVES----------GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--TGGIFE 498 (524)
T ss_pred CCeEEEEEccC----------CceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--CCeEEE
Confidence 99999999998 4678888 5778899999999999999999999999999999999999983 678999
Q ss_pred EEEeCCCCeEEEEEeCCCeEEE
Q 035500 583 AKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~DgtIRc 604 (606)
++|+..|.. +..+-.|+.++|
T Consensus 499 l~Wn~~G~k-l~~~~sd~~vcv 519 (524)
T KOG0273|consen 499 LCWNAAGDK-LGACASDGSVCV 519 (524)
T ss_pred EEEcCCCCE-EEEEecCCCceE
Confidence 999999975 566666888776
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-18 Score=181.38 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=141.7
Q ss_pred cccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeE
Q 035500 429 HIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCV 507 (606)
Q Consensus 429 ~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtI 507 (606)
++|.+| |+++.|.|..+.++++|+.|+.|+||++-. ++++.++. ||..+|.+++|++ .+..++|+|.|+++
T Consensus 211 ~gH~kg-----vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~--gH~k~Vrd~~~s~-~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 211 SGHTKG-----VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK--GHRKPVRDASFNN-CGTSFLSASFDRFL 282 (503)
T ss_pred cCCccc-----cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh--cchhhhhhhhccc-cCCeeeeeecceee
Confidence 455567 667889998999999999999999999865 88888776 9999999999997 67889999999999
Q ss_pred EEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
++||.++ ..++..+.....++++.|+|++ +.|++|+.|+.|+.||+|+++.+++.. .|-+.|..+.|-
T Consensus 283 KlwDtET----------G~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 283 KLWDTET----------GQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFV 351 (503)
T ss_pred eeecccc----------ceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEc
Confidence 9999999 4577888888889999999998 899999999999999999999999998 699999999999
Q ss_pred CCCCeEEEEEeCCCeEEE
Q 035500 587 HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIRc 604 (606)
+.|.. ++++|.|+++|+
T Consensus 352 ~~g~r-FissSDdks~ri 368 (503)
T KOG0282|consen 352 DEGRR-FISSSDDKSVRI 368 (503)
T ss_pred cCCce-EeeeccCccEEE
Confidence 99996 899999999986
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=188.07 Aligned_cols=150 Identities=20% Similarity=0.283 Sum_probs=130.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+|.++.++|+|+.||+|++||+.+++.+..+. +|.+.|++++|+|.++.+|+|||.||+|++||++.
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~----- 607 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK--EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ----- 607 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec--CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-----
Confidence 67899998778999999999999999999988877655 99999999999986778999999999999999987
Q ss_pred ccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEK-PLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..++.++.++..|.++.|++ ++.++++|+.||.|++||+++++ ++..+. +|...|++++|. ++. .+++||
T Consensus 608 -----~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~-~lvs~s 679 (793)
T PLN00181 608 -----GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSS-TLVSSS 679 (793)
T ss_pred -----CcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCC-EEEEEE
Confidence 34566777777899999965 57899999999999999999876 566777 799999999997 455 588999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|+.
T Consensus 680 ~D~~iki 686 (793)
T PLN00181 680 TDNTLKL 686 (793)
T ss_pred CCCEEEE
Confidence 9999985
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-18 Score=174.40 Aligned_cols=151 Identities=16% Similarity=0.298 Sum_probs=135.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe------ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP------SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~------~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
+.|-.|+| ||+++++|+.||-|.|||..+|+....++ +.-|..+|.|++|+. +...++||+.||.|++|.++
T Consensus 216 ~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 216 VECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred hhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEe
Confidence 56677999 99999999999999999999988765433 224788999999997 67899999999999999999
Q ss_pred CCCCCcccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 514 HIPPKVADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
+ ..|++.|. |...|+++.|+.++..+.++|.|.++++.-+.+|+.+++|. ||++.|+.+.|.++|.+
T Consensus 294 t----------G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG~~ 362 (508)
T KOG0275|consen 294 T----------GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDGHH 362 (508)
T ss_pred c----------chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCCCe
Confidence 9 56888887 44569999999999999999999999999999999999999 89999999999999997
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
+.++|.||+||.
T Consensus 363 -iisaSsDgtvkv 374 (508)
T KOG0275|consen 363 -IISASSDGTVKV 374 (508)
T ss_pred -EEEecCCccEEE
Confidence 679999999985
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.4e-17 Score=165.78 Aligned_cols=150 Identities=13% Similarity=0.221 Sum_probs=134.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC--------------CCEEEEEECCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY--------------PSKLVAGSDSG 505 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~--------------~~~LaSgS~Dg 505 (606)
|+.++.+- ||.++|+++.|.+|++|-..++.+...+. +|.-+|-+++|.|.. +..+.++|.|+
T Consensus 238 vr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR--~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 238 VRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELR--EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred EEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhh--ccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 77778887 99999999999999999999987766444 888899999997631 24799999999
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
+||+||+.+ ..++.++.+|.. |.+++|+|.|++++|+.+|+++++||++++++..+++ +|..-|+++.
T Consensus 315 tIk~wdv~t----------g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lD 383 (406)
T KOG0295|consen 315 TIKIWDVST----------GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLD 383 (406)
T ss_pred eEEEEeccC----------CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEe
Confidence 999999999 468888887654 9999999999999999999999999999999999999 8999999999
Q ss_pred EeCCCCeEEEEEeCCCeEEE
Q 035500 585 FSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 585 fsP~g~~LLaTgS~DgtIRc 604 (606)
|+.+.++ ++|||-|++++.
T Consensus 384 fh~~~p~-VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 384 FHKTAPY-VVTGSVDQTVKV 402 (406)
T ss_pred cCCCCce-EEeccccceeee
Confidence 9999995 889999999875
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=155.75 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=129.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++.|.. +|+.+++||.||++||||++.-.+.+.+ .|..+|.++..+| +..-|++|..+|.|++||+....-..
T Consensus 86 VtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~---~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 86 VTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNY---QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTH 160 (311)
T ss_pred eEEEEEee-cCeEEEecCCCceEEEEeccCcccchhc---cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCcccc
Confidence 78899998 9999999999999999999985554433 6779999999999 55779999999999999998641100
Q ss_pred ---------------------------------------ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEE
Q 035500 520 ---------------------------------------ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVA 559 (606)
Q Consensus 520 ---------------------------------------~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~ 559 (606)
.......|+..++.|.. +..+.++|+++++|++|.|.+++
T Consensus 161 ~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 161 ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEE
Confidence 00011235556664444 88888999999999999999999
Q ss_pred EEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 560 LYDINTE-KPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 560 IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
||...+. +....++ +|...++..+|+-+|.| ++|||.|+++|.
T Consensus 241 iwn~~~~~kle~~l~-gh~rWvWdc~FS~dg~Y-lvTassd~~~rl 284 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLT-GHQRWVWDCAFSADGEY-LVTASSDHTARL 284 (311)
T ss_pred EEecCCceeeEEEee-cCCceEEeeeeccCccE-EEecCCCCceee
Confidence 9999987 5566777 89999999999999997 789999999874
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-17 Score=179.44 Aligned_cols=155 Identities=15% Similarity=0.261 Sum_probs=136.2
Q ss_pred ccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 430 IYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 430 ~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
..|+|. |+.++||| .+-++++||+|-+|+||+..+.+++.++ .||.+.|..+.|++. -.+++|+|+|.||+|
T Consensus 48 deHdGp----VRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL--~GHlDYVRt~~FHhe-yPWIlSASDDQTIrI 119 (1202)
T KOG0292|consen 48 DEHDGP----VRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTL--LGHLDYVRTVFFHHE-YPWILSASDDQTIRI 119 (1202)
T ss_pred hccCCc----cceeeecC-CCCeEEecCCccEEEEEecccceehhhh--ccccceeEEeeccCC-CceEEEccCCCeEEE
Confidence 347897 99999999 7779999999999999999999987655 499999999999984 468999999999999
Q ss_pred EeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCC-----c----------------
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTE-----K---------------- 567 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-----k---------------- 567 (606)
|+..+ +.++..+.+|.- |.|.+|||...+++|+|-|.+|++||+..- .
T Consensus 120 WNwqs----------r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~d 189 (1202)
T KOG0292|consen 120 WNWQS----------RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSD 189 (1202)
T ss_pred EeccC----------CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchh
Confidence 99998 679999997755 999999999999999999999999998721 0
Q ss_pred -------ee-EEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 568 -------PL-QLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 568 -------~v-~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+ +.++ ||...|+-++|+|.-+ ++++|+.|+.|+|
T Consensus 190 Lfg~~DaVVK~VLE-GHDRGVNwaAfhpTlp-liVSG~DDRqVKl 232 (1202)
T KOG0292|consen 190 LFGQTDAVVKHVLE-GHDRGVNWAAFHPTLP-LIVSGADDRQVKL 232 (1202)
T ss_pred hcCCcCeeeeeeec-ccccccceEEecCCcc-eEEecCCcceeeE
Confidence 01 3445 8999999999999998 7999999999986
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.2e-17 Score=174.23 Aligned_cols=152 Identities=15% Similarity=0.145 Sum_probs=132.9
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
.|.+++|+|.|.+.+|+++.|++|+||.+.+..+..+++ ||...|.++.+.+.+ -.+++||++|.+||+||.++
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~--gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt--- 216 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE--GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT--- 216 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee--ccccCcceEEeccCCCcceEEecCCCceEEEeecch---
Confidence 488999999999999999999999999998877777666 999999999998732 23899999999999999999
Q ss_pred CcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 518 KVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+.|++++.+|.. |..+.|||.=.+++|||.||+++||...+=+...++.. --++|+||+-.+.+.. ++.|
T Consensus 217 -------k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-gleRvW~I~~~k~~~~-i~vG 287 (794)
T KOG0276|consen 217 -------KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-GLERVWCIAAHKGDGK-IAVG 287 (794)
T ss_pred -------HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc-CCceEEEEeecCCCCe-EEEe
Confidence 789999997755 99999999999999999999999999988777777764 4689999999988874 7788
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
...|.|..
T Consensus 288 ~Deg~i~v 295 (794)
T KOG0276|consen 288 FDEGSVTV 295 (794)
T ss_pred ccCCcEEE
Confidence 87776643
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=168.14 Aligned_cols=152 Identities=20% Similarity=0.186 Sum_probs=133.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..+.|+|++...+++|++|+.+++||+.+... .....+|++.|.+.+|+|.++.+++|||.||+|++||.+..
T Consensus 113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~---- 186 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL---- 186 (487)
T ss_pred eeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC----
Confidence 667789999999999999999999999998775 34556999999999999988889999999999999999983
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+.++.|..+|.+|.+-|.|.++|++|. +.|++||+-+|.. +..+. .|...|+|+++..++.. |.+||-
T Consensus 187 -----~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~r-LlS~sL 258 (487)
T KOG0310|consen 187 -----TSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTR-LLSGSL 258 (487)
T ss_pred -----CceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh-cccceEEEEEeecCCce-Eeeccc
Confidence 257889999999999999999999999987 6899999996644 44554 49999999999998875 789999
Q ss_pred CCeEEEc
Q 035500 599 TTMSRCG 605 (606)
Q Consensus 599 DgtIRc~ 605 (606)
|+.|+..
T Consensus 259 D~~VKVf 265 (487)
T KOG0310|consen 259 DRHVKVF 265 (487)
T ss_pred ccceEEE
Confidence 9999863
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.5e-17 Score=165.77 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=132.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+.+++|+. .-|+.+++.|++|+-||++..+.++.+ +||-+.|++++.+|. -+.|+|||.|.++++||+++
T Consensus 196 vr~vavS~r-HpYlFs~gedk~VKCwDLe~nkvIR~Y--hGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRt----- 266 (460)
T KOG0285|consen 196 VRGVAVSKR-HPYLFSAGEDKQVKCWDLEYNKVIRHY--HGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRT----- 266 (460)
T ss_pred eeeeeeccc-CceEEEecCCCeeEEEechhhhhHHHh--ccccceeEEEecccc-ceeEEecCCcceEEEeeecc-----
Confidence 788999984 449999999999999999999988855 499999999999994 57899999999999999999
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
+.++.++.+ ..+|.+|.+.|.+..++|||.|++|++||++.|+...++. .|...|.+++.+|... +||++|.
T Consensus 267 -----r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~-~fASas~ 339 (460)
T KOG0285|consen 267 -----RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKEN-LFASASP 339 (460)
T ss_pred -----cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchh-hhhccCC
Confidence 678889985 5779999999999999999999999999999999999999 5999999999999865 7999998
Q ss_pred CCe
Q 035500 599 TTM 601 (606)
Q Consensus 599 Dgt 601 (606)
|.+
T Consensus 340 dni 342 (460)
T KOG0285|consen 340 DNI 342 (460)
T ss_pred ccc
Confidence 864
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-17 Score=168.56 Aligned_cols=161 Identities=16% Similarity=0.241 Sum_probs=125.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC-
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK- 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~- 518 (606)
|..+.||| |.+++++++.|..+++||+.+|.....++. +|...+.+.+|.| ++..+++||.|++|..||.......
T Consensus 272 V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~~-~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~ 348 (519)
T KOG0293|consen 272 VSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYPS-GLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGN 348 (519)
T ss_pred eEEEEECC-CCCeEEecCchHheeeccCCcchhhhhccc-CcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhc
Confidence 66788999 889999999999999999999999887753 5778899999999 6678999999999999998764110
Q ss_pred ---cc-----cc--------------------------------cCCcce------------------------------
Q 035500 519 ---VA-----DA--------------------------------RGNSSV------------------------------ 528 (606)
Q Consensus 519 ---~~-----~l--------------------------------~~~~~i------------------------------ 528 (606)
+. .+ ....++
T Consensus 349 W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 349 WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence 00 00 000011
Q ss_pred --EEeecCCC---eEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 529 --ATYYDFEQ---LTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 529 --~t~~~~~~---V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
+.+.++.+ +-.-+|-- +..+++|||.|++|+||+-++|+++.++. ||...|++|+|+|..++++|+||.||+|
T Consensus 429 lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-GHs~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 429 LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS-GHSKTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec-CCcceeeEEecCCCCHHHhhccCCCCeE
Confidence 11122211 11222322 23689999999999999999999999999 8999999999999999999999999999
Q ss_pred EE
Q 035500 603 RC 604 (606)
Q Consensus 603 Rc 604 (606)
|+
T Consensus 508 RI 509 (519)
T KOG0293|consen 508 RI 509 (519)
T ss_pred EE
Confidence 96
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-17 Score=182.91 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=128.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC---CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN---GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t---g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
+..+.|+..+.++|||++..|.|.+||+.. .+.+. .+..|...|+++.|++..+.+|+|||.||+||+||++.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~--~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-- 165 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT--VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-- 165 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhh--HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec--
Confidence 445678887889999999999999999986 23333 34589999999999998899999999999999999998
Q ss_pred CCcccccCCcceEEeec-CCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 517 PKVADARGNSSVATYYD-FEQLTSVHVNST-DDQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
+....++.+ ...|.+|+|+|. ++.|+++.+.|.+.+||+|.. +....+. +|.++|.++.|+|++.+ +
T Consensus 166 --------~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhPnr~~-l 235 (839)
T KOG0269|consen 166 --------KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHPNREW-L 235 (839)
T ss_pred --------ccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh-cccCceEEEeecCCCce-e
Confidence 344555655 455999999997 579999999999999999965 4567777 89999999999998775 8
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
||||.|++|++
T Consensus 236 ATGGRDK~vki 246 (839)
T KOG0269|consen 236 ATGGRDKMVKI 246 (839)
T ss_pred eecCCCccEEE
Confidence 99999999985
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-17 Score=166.22 Aligned_cols=154 Identities=17% Similarity=0.353 Sum_probs=127.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|-.++|||...+.+|+||.||+|+|||++.+.....+....|.+-|.-|.|+... .+|+||++||+++|||++.-+.
T Consensus 260 VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~-- 336 (440)
T KOG0302|consen 260 VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKS-- 336 (440)
T ss_pred hhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccC--
Confidence 6788999999999999999999999999998555555556999999999999744 4999999999999999998543
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCce--------e-------EEEcCCC--CCCe
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKP--------L-------QLFTDMH--REPI 580 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~--------v-------~~l~~gH--~~~I 580 (606)
..|+.+|+ |+.+|++|.|||.. ..|+++|.|.+|.|||+....- . ..+-.-| +..|
T Consensus 337 -----~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~ 411 (440)
T KOG0302|consen 337 -----GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEV 411 (440)
T ss_pred -----CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHh
Confidence 57899998 56779999999986 6899999999999999985321 0 1111125 4568
Q ss_pred EEEEEeCCCCeEEEEEeCCCe
Q 035500 581 NVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 581 ~sV~fsP~g~~LLaTgS~Dgt 601 (606)
..+.|+++-+-++++.+.||.
T Consensus 412 KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 412 KEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred hhheeccCCCCeEEEecccce
Confidence 899999998888999998884
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-15 Score=170.38 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=121.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+|..++++++|+.||+|+|||+++++....+. +|...|.+++|+| ++.+|++|+.|++|++||++++
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~--~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg---- 200 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK--CHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDG---- 200 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc--CCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCC----
Confidence 88999999556899999999999999999988776554 8999999999999 6789999999999999999983
Q ss_pred ccccCCcceEEeecCCC--eEEEEEccCCCEEEEEe----CCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATYYDFEQ--LTSVHVNSTDDQFLASG----YSKNVALYDINTEK-PLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~--V~sV~~sp~g~~LaSgs----~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
..+.++..|.. +..+.|++++..++++| .|+.|++||+++.. ++......+...+....|+|++..+
T Consensus 201 ------~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 201 ------TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLL 274 (493)
T ss_pred ------cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEE
Confidence 35566665432 45778999888777665 47899999999754 4444442234566677889999865
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|..|+.||+
T Consensus 275 ~lggkgDg~Iri 286 (493)
T PTZ00421 275 YIGSKGEGNIRC 286 (493)
T ss_pred EEEEeCCCeEEE
Confidence 555557999986
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=162.28 Aligned_cols=149 Identities=12% Similarity=0.092 Sum_probs=133.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|-| .|+++++++.|.+|+.|+..+|-++.++. +|..-|.-++.+. ++.+++|||.|.++++|-+.+
T Consensus 196 vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~--~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t----- 266 (406)
T KOG0295|consen 196 VSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFP--GHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT----- 266 (406)
T ss_pred eeeEEEEe-cCCeeeecccccceeEEecccceeEEecc--CchHhEEEEEecC-CeeEEEecCCCceEEEEEecc-----
Confidence 77889999 78999999999999999999999999877 9999999999885 778999999999999999988
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccC----------C-----CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNST----------D-----DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~----------g-----~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
+.+...++ |..+|.+++|-|. + ..+++++.|++|++||+.++.++.++. ||.+.|..+
T Consensus 267 -----~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~~ 340 (406)
T KOG0295|consen 267 -----KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRGV 340 (406)
T ss_pred -----chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cccceeeee
Confidence 44555555 4567888888763 2 489999999999999999999999999 899999999
Q ss_pred EEeCCCCeEEEEEeCCCeEEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIRc 604 (606)
+|+|.|+| ++++..|+++||
T Consensus 341 af~p~Gky-i~ScaDDktlrv 360 (406)
T KOG0295|consen 341 AFSPGGKY-ILSCADDKTLRV 360 (406)
T ss_pred EEcCCCeE-EEEEecCCcEEE
Confidence 99999997 779999999997
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=149.10 Aligned_cols=149 Identities=22% Similarity=0.281 Sum_probs=128.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||.|++|+..+++...... +|...+..+.|.| ++..+++++.||.|++||+...
T Consensus 12 i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~---- 83 (289)
T cd00200 12 VTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLK--GHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETG---- 83 (289)
T ss_pred EEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEe--cCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcc----
Confidence 88999999 88999999999999999999887655544 8888999999998 4578999999999999999873
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..+..+ ..+.++.|+|++.++++++.|+.+.+||+++++....+. +|...|++++|+|++. ++++++.
T Consensus 84 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~ 155 (289)
T cd00200 84 ------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGT-FVASSSQ 155 (289)
T ss_pred ------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCC-EEEEEcC
Confidence 344555544 479999999998899999989999999999999888888 7999999999999976 5777777
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.++.
T Consensus 156 ~~~i~i 161 (289)
T cd00200 156 DGTIKL 161 (289)
T ss_pred CCcEEE
Confidence 888764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-17 Score=180.06 Aligned_cols=151 Identities=13% Similarity=0.225 Sum_probs=138.5
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
.||..++||| ..-++.++--.|.|++||.+-+.++..|. .|.++|.+++|+| ...+++|||+|-.|++|+...
T Consensus 10 sRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFd--eHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~--- 82 (1202)
T KOG0292|consen 10 SRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFD--EHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKT--- 82 (1202)
T ss_pred ccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhh--ccCCccceeeecC-CCCeEEecCCccEEEEEeccc---
Confidence 4588899999 55599999999999999999998888665 9999999999999 567999999999999999998
Q ss_pred CcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 518 KVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+.++.++.+| +-|..+.||+.-.+++|+|+|.+|+||+..+++++..+. ||...|.|..|+|... +++++
T Consensus 83 -------rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptED-lIVSa 153 (1202)
T KOG0292|consen 83 -------RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTED-LIVSA 153 (1202)
T ss_pred -------ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccc-eEEEe
Confidence 6788888876 559999999999999999999999999999999999999 8999999999999887 69999
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
|-|++||.
T Consensus 154 SLDQTVRV 161 (1202)
T KOG0292|consen 154 SLDQTVRV 161 (1202)
T ss_pred cccceEEE
Confidence 99999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.9e-16 Score=150.51 Aligned_cols=149 Identities=17% Similarity=0.254 Sum_probs=129.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| ++.++++++.||.|++||..+++....+. .|...+.+++|+| ++..+++++.|+.|++||++..
T Consensus 138 i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~---- 209 (289)
T cd00200 138 VNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTG---- 209 (289)
T ss_pred EEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEe--cCccccceEEECC-CcCEEEEecCCCcEEEEECCCC----
Confidence 78899999 68899888889999999999888777665 8888999999998 5578888999999999999873
Q ss_pred ccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..+ .+..++.+++|+|++.++++++.|+.+++||+++++....+. +|...|.+++|+|++. .+++++.
T Consensus 210 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~ 281 (289)
T cd00200 210 ------KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGK-RLASGSA 281 (289)
T ss_pred ------ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCC-EEEEecC
Confidence 345556 345579999999998899998889999999999999988888 7999999999999987 5889999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.++.
T Consensus 282 d~~i~i 287 (289)
T cd00200 282 DGTIRI 287 (289)
T ss_pred CCeEEe
Confidence 998875
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=161.57 Aligned_cols=153 Identities=21% Similarity=0.322 Sum_probs=129.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC------------C------ceEEEEeccCCCCCEEEEEEeeCCCCEEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN------------G------NVACYIPSIGGTNSVLGLCWLKKYPSKLVAG 501 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t------------g------~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg 501 (606)
+++-+|+| ||.++|+|+.|-.|+|+|++. | ..++ .+..|...|.++.|+| ....|+||
T Consensus 115 cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR--TlYDH~devn~l~FHP-re~ILiS~ 190 (430)
T KOG0640|consen 115 CRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR--TLYDHVDEVNDLDFHP-RETILISG 190 (430)
T ss_pred eeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe--ehhhccCcccceeecc-hhheEEec
Confidence 67889999 999999999999999999761 1 1122 2458999999999999 66899999
Q ss_pred ECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE--EcCCCCCC
Q 035500 502 SDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQL--FTDMHREP 579 (606)
Q Consensus 502 S~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~--l~~gH~~~ 579 (606)
|.|++||+||+.+... +...+.++.-.+|.+++|||.|++++.|.+-.++++||+++-++... -..+|++.
T Consensus 191 srD~tvKlFDfsK~sa-------KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSA-------KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred cCCCeEEEEecccHHH-------HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 9999999999988432 34455666778899999999999999999999999999999876332 22369999
Q ss_pred eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++|.+++.+. +.+|||.||-||.
T Consensus 264 i~~V~Ys~t~~-lYvTaSkDG~Ikl 287 (430)
T KOG0640|consen 264 ITQVRYSSTGS-LYVTASKDGAIKL 287 (430)
T ss_pred eeEEEecCCcc-EEEEeccCCcEEe
Confidence 99999999998 7999999999986
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=162.83 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=128.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-----------------------CceEEEEeccCCCCCEEEEEEeeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-----------------------GNVACYIPSIGGTNSVLGLCWLKKYPS 496 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-----------------------g~~v~~~~~~gH~~~V~~L~fsp~~~~ 496 (606)
|-++...+ ++..+++|+.|.+++||+.++ +...+...+.||+.+|.++.|++ ..
T Consensus 196 V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~ 272 (423)
T KOG0313|consen 196 VDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--AT 272 (423)
T ss_pred eeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CC
Confidence 66788888 999999999999999999321 11112333569999999999996 47
Q ss_pred EEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--e-eEEEc
Q 035500 497 KLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK--P-LQLFT 573 (606)
Q Consensus 497 ~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k--~-v~~l~ 573 (606)
.++|+|.|.+|+.||+..+ ..+.++....++++|+.+|...++++||.|..+++||.|++. . .+.+.
T Consensus 273 v~yS~SwDHTIk~WDletg----------~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~ 342 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETG----------GLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI 342 (423)
T ss_pred ceEeecccceEEEEEeecc----------cceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeee
Confidence 8999999999999999994 456677788889999999999999999999999999999763 2 45666
Q ss_pred CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 574 DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
||++.|.++.|+|...++|++||.|++++.
T Consensus 343 -gH~nwVssvkwsp~~~~~~~S~S~D~t~kl 372 (423)
T KOG0313|consen 343 -GHKNWVSSVKWSPTNEFQLVSGSYDNTVKL 372 (423)
T ss_pred -cchhhhhheecCCCCceEEEEEecCCeEEE
Confidence 899999999999999999999999999984
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=179.28 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=128.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+|.++.++++|+.||+|++||+.++.....+. . ...|.++.|++.++..+++|+.||+|++||++..
T Consensus 578 V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~---- 650 (793)
T PLN00181 578 VWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--T-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNP---- 650 (793)
T ss_pred EEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--c-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----
Confidence 88999998788999999999999999999988877664 3 3579999998767889999999999999999874
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC------ceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE------KPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~------k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
..++.++.+ ...|.+++|. ++..++++|.|++|++||++.+ +++..+. +|...+++++|+|++. +
T Consensus 651 -----~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~-~ 722 (793)
T PLN00181 651 -----KLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDG-Y 722 (793)
T ss_pred -----CccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCC-E
Confidence 224445554 4679999997 6789999999999999999853 5678888 8999999999999988 5
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|+.|++
T Consensus 723 lasgs~D~~v~i 734 (793)
T PLN00181 723 IATGSETNEVFV 734 (793)
T ss_pred EEEEeCCCEEEE
Confidence 899999999875
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=158.56 Aligned_cols=154 Identities=14% Similarity=0.218 Sum_probs=126.5
Q ss_pred ccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 430 IYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 430 ~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
.+|+|+ |..+.|+| +|..+|+|+.|..|.+|+.- +.+.......+|.++|..+.|.+ +++.++|+|.|++++.
T Consensus 44 ~gh~ge----I~~~~F~P-~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 44 PGHKGE----IYTIKFHP-DGSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRG 116 (338)
T ss_pred CCCcce----EEEEEECC-CCCeEeecCCcceEEEEecc-ccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEE
Confidence 345687 88999999 99999999999999999965 44444555669999999999998 6789999999999999
Q ss_pred EeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeC
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP 587 (606)
||++++ +.++.++.|.. |++++-..-| .++.||+.|+++++||+|+..++++++ .+-.++++.|+.
T Consensus 117 wD~~tG----------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d 184 (338)
T KOG0265|consen 117 WDAETG----------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKD 184 (338)
T ss_pred Eecccc----------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecc
Confidence 999994 46777776666 7777633335 488899999999999999999998887 367899999988
Q ss_pred CCCeEEEEEeCCCeEE
Q 035500 588 HSPLCLLLLHLTTMSR 603 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIR 603 (606)
++.. +.+|+-|+.|+
T Consensus 185 ~s~q-v~sggIdn~ik 199 (338)
T KOG0265|consen 185 TSDQ-VISGGIDNDIK 199 (338)
T ss_pred cccc-eeeccccCcee
Confidence 8775 55777776655
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=175.51 Aligned_cols=157 Identities=20% Similarity=0.201 Sum_probs=128.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc--eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN--VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~--~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.++.... +|.++||||.|.+|++|-++.+. ....-...||...|.+++++..+...|+|+|.|+++++|++...+.
T Consensus 368 vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 368 VLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE 446 (775)
T ss_pred eeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence 56677333 56799999999999999874332 2223345699999999999887888999999999999999987322
Q ss_pred CcccccCCcceE----Ee-ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 518 KVADARGNSSVA----TY-YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 518 ~~~~l~~~~~i~----t~-~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.-. ..+. +. -|...|++|+++|.+.++||||.|++.+||++.......++. ||+..|++|.|+|.++ +
T Consensus 447 ~~~-----~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq-~ 519 (775)
T KOG0319|consen 447 TAF-----PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQ-L 519 (775)
T ss_pred ccc-----cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccc-e
Confidence 111 1111 11 255669999999999999999999999999999999999999 8999999999999987 7
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+||+|.|+|||+
T Consensus 520 laT~SgD~TvKI 531 (775)
T KOG0319|consen 520 LATCSGDKTVKI 531 (775)
T ss_pred eEeccCCceEEE
Confidence 999999999986
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.6e-16 Score=149.88 Aligned_cols=159 Identities=20% Similarity=0.262 Sum_probs=123.0
Q ss_pred cccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE---EEEeccCCCCCEEEEEEe--------------
Q 035500 429 HIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA---CYIPSIGGTNSVLGLCWL-------------- 491 (606)
Q Consensus 429 ~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v---~~~~~~gH~~~V~~L~fs-------------- 491 (606)
..||.|. +.|.+|+| +|.++|+|+.|.+|++.-.+...+. ..+++.-|.+.|..++|.
T Consensus 85 ~khhkgs----iyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 85 NKHHKGS----IYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred ccccCcc----EEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 4456675 88999999 9999999999999999654322111 112222344444444442
Q ss_pred -------------------------------eCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-------
Q 035500 492 -------------------------------KKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD------- 533 (606)
Q Consensus 492 -------------------------------p~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~------- 533 (606)
.-++-+++|||.|.+|++||++- ..++.++..
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv----------~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRV----------NSCVNTLDNDFHDGGL 229 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeec----------cceeeeccCcccCCCc
Confidence 01245799999999999999998 345555541
Q ss_pred -CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 534 -FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 534 -~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+.|.+|+..|.|.++++|..|....+||+|.+++++.+. +|+..|.++.|+|.-. .+.|||.|..||.
T Consensus 230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~-yllt~syd~~ikl 299 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAH-YLLTCSYDMKIKL 299 (350)
T ss_pred ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCce-EEEEecccceEEE
Confidence 1459999999999999999999999999999999999999 8999999999999766 4789999999885
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.8e-17 Score=178.01 Aligned_cols=146 Identities=14% Similarity=0.288 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++.||+..+++|++||.||+|++||++..+...++. +....|..++|+|..+.+|+++.+.|.+++||++..
T Consensus 136 ~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~--~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp---- 209 (839)
T KOG0269|consen 136 ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR--SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP---- 209 (839)
T ss_pred eeeeeeccCCccEEEecCCCceEEEEeeeccccccccc--ccchhhhceeeccCCCceEEEecCCceEEEeeccCc----
Confidence 78899999999999999999999999999887776654 678899999999988999999999999999999985
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP--LQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~--v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
..+...+. |.++|.++.|||++.++||||.|++|+|||...+++ ..++. ...+|..|+|-|..++.||++
T Consensus 210 -----~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtc 282 (839)
T KOG0269|consen 210 -----DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARSYHLATC 282 (839)
T ss_pred -----hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--ecceeeeeeeccCccchhhhh
Confidence 34555555 568899999999999999999999999999987655 44444 467899999999999999988
Q ss_pred eC
Q 035500 597 HL 598 (606)
Q Consensus 597 S~ 598 (606)
+.
T Consensus 283 sm 284 (839)
T KOG0269|consen 283 SM 284 (839)
T ss_pred hc
Confidence 75
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.3e-17 Score=164.75 Aligned_cols=144 Identities=13% Similarity=0.195 Sum_probs=121.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|++|. ...+++||.|.+|+|||+++|+++.++ .+|..+|..+.|+. ++++|+|.|.+|.+||+..+..
T Consensus 240 VLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tl--ihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~-- 309 (499)
T KOG0281|consen 240 VLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTL--IHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD-- 309 (499)
T ss_pred EEeeecc---ceEEEecCCCceEEEEeccCCchhhHH--hhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH--
Confidence 8889994 479999999999999999999998865 49999999999985 5899999999999999988431
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
....+.+.+| .+|+.|.|. +++++|+|.|.+|++|++.+++.++++. ||+..|-|+.+. ++ ++++||.
T Consensus 310 -----it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQYr--~r-lvVSGSS 378 (499)
T KOG0281|consen 310 -----ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQYR--DR-LVVSGSS 378 (499)
T ss_pred -----HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-cccccceehhcc--Ce-EEEecCC
Confidence 1223344444 559999885 5699999999999999999999999999 899999999884 44 7899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|.+||.
T Consensus 379 DntIRl 384 (499)
T KOG0281|consen 379 DNTIRL 384 (499)
T ss_pred CceEEE
Confidence 999985
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-16 Score=154.25 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=121.5
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
++.+++|+. +|..+|+|+.|++++||+++.++........+|.+.|-.++|+|..+..+++++.|.+|++||++.++
T Consensus 22 ~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k-- 98 (313)
T KOG1407|consen 22 KVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK-- 98 (313)
T ss_pred cceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc--
Confidence 378899999 99999999999999999999887766666779999999999999999999999999999999999853
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--------------------------------
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE-------------------------------- 566 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-------------------------------- 566 (606)
|+........=.-+.|+|+|++++.++.|..|.+.|.|+-
T Consensus 99 --------~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 99 --------CTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred --------EEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 4444443333334556666666666666666666666543
Q ss_pred ---------ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 567 ---------KPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 567 ---------k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
++++.++ +|.....||+|+|+|++ ||+||.|..+-
T Consensus 171 v~ILsypsLkpv~si~-AH~snCicI~f~p~Gry-fA~GsADAlvS 214 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRY-FATGSADALVS 214 (313)
T ss_pred EEEEeccccccccccc-cCCcceEEEEECCCCce-Eeeccccceee
Confidence 4455566 79999999999999997 99999997663
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=164.65 Aligned_cols=153 Identities=21% Similarity=0.247 Sum_probs=137.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+....+.||+||.|.+|++||+.+|++..++. .|.+.|.++.|+|..+..|++||.|++|.+.|.+..
T Consensus 246 vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~--~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~---- 319 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT--HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP---- 319 (463)
T ss_pred HHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh--hcCCceeEEEecCCCceEEEeccccceEEeeeccCc----
Confidence 56778888788999999999999999999999998776 788999999999999999999999999999999963
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...-..++..+.|-.++|+|.. ..|+++.+||+|+-+|+|+. +++.+++ +|.+.|.++++++.-+.+++|+|
T Consensus 320 -----~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 320 -----SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred -----cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeecc
Confidence 2334567778889999999987 57888899999999999975 8999999 89999999999999999999999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|+.
T Consensus 394 ~d~~Vkl 400 (463)
T KOG0270|consen 394 TDKVVKL 400 (463)
T ss_pred ccceEEE
Confidence 9999874
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-16 Score=155.53 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=134.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-------EE------EEeccCCCCCEEEEEEeeCCCCEEEEEECCCe
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-------AC------YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-------v~------~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt 506 (606)
|.++.+.|..|+++++|+.||.|.|||++.... .. .-.-.+|+-.|..+.|.|.+..++.|+|.|.+
T Consensus 46 vNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDht 125 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHT 125 (397)
T ss_pred cceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccce
Confidence 789999999999999999999999999875331 11 11124788899999999999999999999999
Q ss_pred EEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC---CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 507 VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD---DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g---~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
+|+||.++ .+....|+..+.|.+-+|+|-. -++|+|..|-.|++-|+.+|..-+.+. ||.+.|.+|
T Consensus 126 lKVWDtnT----------lQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV 194 (397)
T KOG4283|consen 126 LKVWDTNT----------LQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAV 194 (397)
T ss_pred EEEeeccc----------ceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEE
Confidence 99999998 4456677778889999999975 378888888999999999999999999 899999999
Q ss_pred EEeCCCCeEEEEEeCCCeEEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|+|...|+++|||.||.||.
T Consensus 195 ~Wsp~~e~vLatgsaDg~irl 215 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRL 215 (397)
T ss_pred EeccCceeEEEecCCCceEEE
Confidence 999999999999999999984
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.9e-16 Score=151.13 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=126.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+.+.|+- +|+|.++++.|++||+|+...|.++.++. +|...|..++.+. +...|+||+.|..+.+||+.++
T Consensus 20 V~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYs--ghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TG---- 91 (307)
T KOG0316|consen 20 VRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYS--GHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTG---- 91 (307)
T ss_pred eEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeec--CCCceeeeccccc-cccccccCCCCceEEEEEcccC----
Confidence 77888998 99999999999999999999999999887 7878899999886 5578999999999999999994
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTE--KPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+.++.|.+| .+|+.|+|+..+..+++||.|.++++||.|+. +|++.+. .....|.++..+. +.+++|
T Consensus 92 ------kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~~---heIvaG 161 (307)
T KOG0316|consen 92 ------KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVAE---HEIVAG 161 (307)
T ss_pred ------eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEecc---cEEEee
Confidence 467788866 55999999999999999999999999999964 6777777 3567777777753 346778
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
|.||++|.
T Consensus 162 S~DGtvRt 169 (307)
T KOG0316|consen 162 SVDGTVRT 169 (307)
T ss_pred ccCCcEEE
Confidence 88887775
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-15 Score=168.50 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=114.6
Q ss_pred EEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-
Q 035500 455 FGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD- 533 (606)
Q Consensus 455 SGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~- 533 (606)
.|+.+|.|++|+......+..+ .+|.+.|.+++|+|.++.+|+|||.||+|++||+.......... ..++..+.+
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L--~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i--~~p~~~L~gH 124 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKL--KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI--KDPQCILKGH 124 (568)
T ss_pred CCCceeEEEeeecCCCceEEEE--cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--ccceEEeecC
Confidence 3677899999998776655544 59999999999999767899999999999999998642111100 124455554
Q ss_pred CCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 534 FEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 534 ~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
...|.+++|||++. +++++|.|++|++||+++++.+..+. |...|.+++|+|+|. ++++++.|++||+
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~-lLat~s~D~~IrI 193 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGN-LLSGTCVGKHMHI 193 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCC-EEEEEecCCEEEE
Confidence 46699999999986 56799999999999999998877776 567899999999998 5788889999885
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.8e-16 Score=159.02 Aligned_cols=150 Identities=16% Similarity=0.217 Sum_probs=128.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++.|++ ...+.++|.|++|++||++++....... .....+++..+| ...+|++||.|..|++||.+.+..
T Consensus 263 Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~---~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g-- 334 (423)
T KOG0313|consen 263 VSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLT---TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG-- 334 (423)
T ss_pred eeeEEEcC--CCceEeecccceEEEEEeecccceeeee---cCcceeEeeccc-ccceeeecCCCCceeecCCCCCCC--
Confidence 88899987 5689999999999999999999887654 245789999998 668999999999999999998632
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTEK-PLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+....++.+| .-|.++.|+|.. ..|++|+.|+++++||+|+.+ ++..+. +|...|.++.|+..+ ++++|
T Consensus 335 -----s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~-~h~DKvl~vdW~~~~--~IvSG 406 (423)
T KOG0313|consen 335 -----SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA-GHNDKVLSVDWNEGG--LIVSG 406 (423)
T ss_pred -----ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec-cCCceEEEEeccCCc--eEEec
Confidence 3445566655 459999999997 489999999999999999887 899999 899999999998654 58999
Q ss_pred eCCCeEEEc
Q 035500 597 HLTTMSRCG 605 (606)
Q Consensus 597 S~DgtIRc~ 605 (606)
|.|.++|+.
T Consensus 407 GaD~~l~i~ 415 (423)
T KOG0313|consen 407 GADNKLRIF 415 (423)
T ss_pred cCcceEEEe
Confidence 999999874
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-17 Score=178.91 Aligned_cols=149 Identities=15% Similarity=0.263 Sum_probs=137.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|+.|++ ...+|++|+.+|+|++||++.++.+.++ .||...+..+.|+| .+.++++||.|+.+++||++.
T Consensus 73 IeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtL--tgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk----- 143 (825)
T KOG0267|consen 73 IESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTL--TGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRK----- 143 (825)
T ss_pred ceeeecCc-chhhhcccccCCceeeeehhhhhhhhhh--hccccCcceeeecc-ceEEeccccccccceehhhhc-----
Confidence 78899999 8889999999999999999999988855 49999999999999 667889999999999999997
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..|..++.+|.. |..+.|+|+|.++++|++|.+++|||...|+...+|+ +|.+.|.++.|+|..- ++++||.
T Consensus 144 -----~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~-Lla~Gs~ 216 (825)
T KOG0267|consen 144 -----KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEV-LLAPGSS 216 (825)
T ss_pred -----cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc-cccccccccccCchhh-hhccCCC
Confidence 568888887655 7889999999999999999999999999999999999 7999999999999864 8999999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+++|.
T Consensus 217 d~tv~f 222 (825)
T KOG0267|consen 217 DRTVRF 222 (825)
T ss_pred Cceeee
Confidence 999984
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=149.31 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=129.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+.+.|.. ..+.+.+++.|++||+||..++..+..+.+ ..+|.++..++ ++ .+++.+.-++|++||..+
T Consensus 146 Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~---~s~VtSlEvs~-dG-~ilTia~gssV~Fwdaks----- 214 (334)
T KOG0278|consen 146 IRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEF---NSPVTSLEVSQ-DG-RILTIAYGSSVKFWDAKS----- 214 (334)
T ss_pred ceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEec---CCCCcceeecc-CC-CEEEEecCceeEEecccc-----
Confidence 77888988 556777889999999999999999988865 34699999997 43 466777888999999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
...++.++-...|.+.+.+|+...+++|+.|..++-||..+++.+-.+..+|-++|.|+.|+|+|. +.|+||.|
T Consensus 215 -----f~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSED 288 (334)
T KOG0278|consen 215 -----FGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSED 288 (334)
T ss_pred -----ccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCC
Confidence 456777777788999999999999999999999999999999998887558999999999999998 79999999
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
|+||.
T Consensus 289 GTirl 293 (334)
T KOG0278|consen 289 GTIRL 293 (334)
T ss_pred ceEEE
Confidence 99995
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=149.46 Aligned_cols=147 Identities=20% Similarity=0.205 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..++.+. |...+++|+.|+.|.+||+++|+..+.+. +|.+.|..++|+. ....++|||.|.++++||.++..
T Consensus 62 VlD~~~s~-Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r--gH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s--- 134 (307)
T KOG0316|consen 62 VLDAALSS-DNSKFASCGGDKAVQVWDVNTGKVDRRFR--GHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRS--- 134 (307)
T ss_pred eeeccccc-cccccccCCCCceEEEEEcccCeeeeecc--cccceeeEEEecC-cceEEEeccccceeEEEEcccCC---
Confidence 66777777 78899999999999999999999998655 9999999999995 67899999999999999999853
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.+|++.+.. .+.|.+|..+ +..+++||.||+++.||+|.|+.....- ..+|++++|+|++.. ...++.
T Consensus 135 -----~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc-~La~~l 203 (307)
T KOG0316|consen 135 -----FEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNC-SLASSL 203 (307)
T ss_pred -----CCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCE-EEEeec
Confidence 468888874 6779999886 6789999999999999999998765554 369999999999996 567889
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+++|.
T Consensus 204 ~stlrL 209 (307)
T KOG0316|consen 204 DSTLRL 209 (307)
T ss_pred cceeee
Confidence 999985
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-16 Score=164.39 Aligned_cols=161 Identities=14% Similarity=0.206 Sum_probs=134.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.|+.|+|.+.+.+++|+.|+.|+-||+++++.+..+. .|-+.|..+.|-+ ++..++|.|+|+++++|+.+.+....
T Consensus 302 ~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik 378 (503)
T KOG0282|consen 302 PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--RHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIK 378 (503)
T ss_pred ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--hhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccch
Confidence 78999999666999999999999999999999887655 7889999999998 67899999999999999987652211
Q ss_pred ccc------------c------------------------CCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEE
Q 035500 520 ADA------------R------------------------GNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVAL 560 (606)
Q Consensus 520 ~~l------------~------------------------~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~I 560 (606)
... . ....-..|.+| +--..+.|+|+|.++++|+.||.+.+
T Consensus 379 ~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~ 458 (503)
T KOG0282|consen 379 NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNF 458 (503)
T ss_pred hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEE
Confidence 000 0 00111233333 22578999999999999999999999
Q ss_pred EECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 561 YDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 561 WDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
||.++.+.+..++ +|.+.+..+.|+|..+..+||||.||.|++
T Consensus 459 wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 459 WDWKTTKLVSKLK-AHDQPCIGVDWHPVEPSKVATCGWDGLIKI 501 (503)
T ss_pred eechhhhhhhccc-cCCcceEEEEecCCCcceeEecccCceeEe
Confidence 9999999999999 899999999999999999999999999985
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-15 Score=158.02 Aligned_cols=148 Identities=16% Similarity=0.243 Sum_probs=129.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP-SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~-~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.|+.|+| ||.++|+++.||+|.+||=.+|+.+..+. ..+|++.|++++|+| ++..++|+|.|.++||||+.+
T Consensus 193 V~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~---- 266 (603)
T KOG0318|consen 193 VNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVST---- 266 (603)
T ss_pred eeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeec----
Confidence 88999999 99999999999999999999999988776 458999999999999 678999999999999999998
Q ss_pred cccccCCcceEEeecC----CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYYDF----EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~----~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
...+.++... ++...+-|- ...+++.+-+|+|.+++...+.+++++. ||...|+++..+|++.+ +.
T Consensus 267 ------~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~-i~ 336 (603)
T KOG0318|consen 267 ------NSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKT-IY 336 (603)
T ss_pred ------cceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheec-ccccceeEEEEcCCCCE-EE
Confidence 4566666632 233333364 7899999999999999999999888888 89999999999999986 78
Q ss_pred EEeCCCeEE
Q 035500 595 LLHLTTMSR 603 (606)
Q Consensus 595 TgS~DgtIR 603 (606)
+||.||.|.
T Consensus 337 SgsyDG~I~ 345 (603)
T KOG0318|consen 337 SGSYDGHIN 345 (603)
T ss_pred eeccCceEE
Confidence 999999885
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-16 Score=172.65 Aligned_cols=264 Identities=14% Similarity=0.102 Sum_probs=187.4
Q ss_pred hhhhhhccCCCCcccchhhHHHHHhhCCCceeccCCCCCcchHHHHHHHhhhcccccccccccccchhhhhhc-cccCCC
Q 035500 305 KLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVFARYFEHLPYKRKHKESVVSLLQK-REMGTS 383 (606)
Q Consensus 305 ~L~~~l~~~~npi~~~~~YReyvI~~Lp~LkvLD~~~i~~~eRe~A~~ifS~~fe~Lp~~~k~k~svv~iL~~-rei~~~ 383 (606)
-|+ ...+|..|+.+.++|.. .++.+..+.++++.+.|+.+-|....+ -+.....+. ...+..
T Consensus 326 ~LR-~R~GHs~Pp~~irfy~~------------~g~~ilsa~~Drt~r~fs~~~e~~~~~----l~~~~~~~~~kk~~~~ 388 (910)
T KOG1539|consen 326 LLR-SRGGHSAPPSCIRFYGS------------QGHFILSAKQDRTLRSFSVISESQSQE----LGQLHNKKRAKKVNVF 388 (910)
T ss_pred hee-eccCCCCCchheeeecc------------CcEEEEecccCcchhhhhhhHHHHhHh----hccccccccccccccc
Confidence 455 88899999999999976 355555556666666666544431100 000000000 000000
Q ss_pred CCccCCCCCCCC--CCc--chhhHHHHHhhhhccc--cccCCccce----eeeccc-ccccCceeeceeEEEEcCCCCCE
Q 035500 384 GNYQNSSKPKQP--NIH--RTQHFFSRSLSAAKLG--SSAWPLLHP----VSSFSH-IYKEGNKRVRPRQFEYNPSNPSL 452 (606)
Q Consensus 384 ~~~~~~~~~~p~--~~p--~~~~~y~ral~a~kl~--~~~~~~i~~----l~i~~~-~~~~G~~~~rV~slafsP~dg~~ 452 (606)
......+.|. +.. .++++|.....+.+.. ...|.+..+ ..+... ...++. -+++++.++ .|++
T Consensus 389 --~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~---~~~av~vs~-CGNF 462 (910)
T KOG1539|consen 389 --STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDI---NATAVCVSF-CGNF 462 (910)
T ss_pred --chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCc---ceEEEEEec-cCce
Confidence 0000111111 111 5677787776666554 344444322 111000 001222 278999999 9999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEE-eccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEe
Q 035500 453 MAFGTLDGEVIVINHENGNVACYI-PSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATY 531 (606)
Q Consensus 453 LaSGs~DGtVrIWDi~tg~~v~~~-~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~ 531 (606)
.+.|++.|+|-+|++++|.....+ ....|+++|++++... ....++|++.+|-+++||+.+ +..+..+
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~----------k~l~~~l 531 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKK----------KVLKKSL 531 (910)
T ss_pred EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCC----------cceeeee
Confidence 999999999999999999888766 2348999999999986 457899999999999999998 5567778
Q ss_pred ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 532 YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 532 ~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+-...+..+..|.....++.+.+|-.|+++|..+.+.++.|. ||.+.|++++|+|+|+| +++++.|++||+
T Consensus 532 ~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~-gh~nritd~~FS~DgrW-lisasmD~tIr~ 602 (910)
T KOG1539|consen 532 RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW-GHGNRITDMTFSPDGRW-LISASMDSTIRT 602 (910)
T ss_pred ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh-ccccceeeeEeCCCCcE-EEEeecCCcEEE
Confidence 878889999999999999999999999999999999999999 89999999999999998 789999999996
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-15 Score=165.83 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=130.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+++++.. .++++++|+.|++++|||..+|.+...+. ||.+.|.++...+ ..+++||.|.+|++|++..
T Consensus 252 V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n----- 320 (537)
T KOG0274|consen 252 VWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTN----- 320 (537)
T ss_pred ceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEEEEEccC---ceEeeccCCceEEEEeccC-----
Confidence 78888975 68899999999999999999999999876 9999999998765 5788999999999999997
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+.++. |..+|.+|..+ ++++++|+.|++|++||+++++++..+. ||..+|+++.+.+. ..+.+||.
T Consensus 321 -----~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~~--~~~~Sgs~ 390 (537)
T KOG0274|consen 321 -----GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDSE--NRLLSGSL 390 (537)
T ss_pred -----cceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEEecCc--ceEEeeee
Confidence 56788888 77889999987 8999999999999999999999999999 89999999988765 46889999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++||.
T Consensus 391 D~~Ikv 396 (537)
T KOG0274|consen 391 DTTIKV 396 (537)
T ss_pred ccceEe
Confidence 999985
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=148.93 Aligned_cols=153 Identities=14% Similarity=0.190 Sum_probs=125.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec-----------------------------------------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS----------------------------------------- 478 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~----------------------------------------- 478 (606)
|.|++.+. +...+++|+.|.++++||+++|+.+..++.
T Consensus 55 vW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~ 133 (327)
T KOG0643|consen 55 VWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD 133 (327)
T ss_pred EEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh
Confidence 88999998 889999999999999999999998765441
Q ss_pred ----------cCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCC
Q 035500 479 ----------IGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDD 547 (606)
Q Consensus 479 ----------~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~ 547 (606)
..+.+.++..-|.| .+..+++|..||.|..||++++. ..+.+-+ |...|++++++|+..
T Consensus 134 ~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~---------~~v~s~~~h~~~Ind~q~s~d~T 203 (327)
T KOG0643|consen 134 IDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGK---------ELVDSDEEHSSKINDLQFSRDRT 203 (327)
T ss_pred hcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCc---------eeeechhhhccccccccccCCcc
Confidence 12456677888888 56889999999999999999852 3344433 445699999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEc------------------------------------------------------
Q 035500 548 QFLASGYSKNVALYDINTEKPLQLFT------------------------------------------------------ 573 (606)
Q Consensus 548 ~LaSgs~Dg~I~IWDlrt~k~v~~l~------------------------------------------------------ 573 (606)
+|+++|.|.+.++||.++-+.++++.
T Consensus 204 ~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv 283 (327)
T KOG0643|consen 204 YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV 283 (327)
T ss_pred eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence 99999999999999998754432221
Q ss_pred CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 574 DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.||=++|++++|+|+|+ .+++|++||.||.
T Consensus 284 kGHFGPINsvAfhPdGk-sYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 284 KGHFGPINSVAFHPDGK-SYSSGGEDGYVRL 313 (327)
T ss_pred cccccCcceeEECCCCc-ccccCCCCceEEE
Confidence 27999999999999999 4999999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6e-15 Score=157.52 Aligned_cols=153 Identities=16% Similarity=0.253 Sum_probs=115.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe------------------------------------------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP------------------------------------------ 477 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~------------------------------------------ 477 (606)
++-..|+| .|.++|+|...|+|||||......+..-+
T Consensus 62 vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~Sv 140 (603)
T KOG0318|consen 62 VTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSV 140 (603)
T ss_pred eEEEEeCC-CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCcc
Confidence 45556999 79999999999999999976533332222
Q ss_pred --ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeC
Q 035500 478 --SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGY 554 (606)
Q Consensus 478 --~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~ 554 (606)
..||...|.++.|-|..+-.++|||+|++|.+|+-.- .+--.+++.| .-|+++.|+|+|++|||+|.
T Consensus 141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP----------FKFk~s~r~HskFV~~VRysPDG~~Fat~gs 210 (603)
T KOG0318|consen 141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP----------FKFKSSFREHSKFVNCVRYSPDGSRFATAGS 210 (603)
T ss_pred ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC----------eeeeecccccccceeeEEECCCCCeEEEecC
Confidence 2345555666666565555666666666666664221 1112234444 44999999999999999999
Q ss_pred CCcEEEEECCCCceeEEEc--CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 555 SKNVALYDINTEKPLQLFT--DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 555 Dg~I~IWDlrt~k~v~~l~--~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
||++.+||=.+++.+..+. .+|++.|++++|+|++.. ++|+|.|.++|+
T Consensus 211 Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KI 261 (603)
T KOG0318|consen 211 DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKI 261 (603)
T ss_pred CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCce-EEEecCCceEEE
Confidence 9999999999999998887 369999999999999996 889999999985
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-15 Score=149.17 Aligned_cols=146 Identities=18% Similarity=0.296 Sum_probs=117.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|||+...++++||.||+||+|+++. |..+.. ....|.++|.+++|+. ++.++++|+.|+.+++||+.++
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k-a~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~--- 104 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK-AQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASG--- 104 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccch-hhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCC---
Confidence 778999998888999999999999999986 455542 2357999999999996 6799999999999999999983
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCC--EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDD--QFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~--~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+....-.|..+|..++|-+... .++|||.|++|++||+|..+++.++.. .++++++..- .+ +++.+
T Consensus 105 -------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L--PeRvYa~Dv~--~p-m~vVa 172 (347)
T KOG0647|consen 105 -------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL--PERVYAADVL--YP-MAVVA 172 (347)
T ss_pred -------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec--cceeeehhcc--Cc-eeEEE
Confidence 3344455778899999987765 899999999999999999999888873 6788887753 22 34444
Q ss_pred eCCCeE
Q 035500 597 HLTTMS 602 (606)
Q Consensus 597 S~DgtI 602 (606)
..++-|
T Consensus 173 ta~r~i 178 (347)
T KOG0647|consen 173 TAERHI 178 (347)
T ss_pred ecCCcE
Confidence 444433
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-15 Score=160.76 Aligned_cols=150 Identities=14% Similarity=0.196 Sum_probs=131.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE--CCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS--DSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS--~DgtIklWDl~~~~~ 517 (606)
|.-++|++ ++.++|+|+.|+.+.|||.........+. .|+.+|.+++|+|...++||+|+ .|++|++||..+
T Consensus 304 VCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~--~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~--- 377 (484)
T KOG0305|consen 304 VCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFT--EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT--- 377 (484)
T ss_pred eeeeEECC-CCCeeccCCCccceEeccCCCccccEEEe--ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC---
Confidence 66789999 99999999999999999996655555444 99999999999999889999974 799999999998
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
...+.......+|+++.|++..+-++++. .++.|.||+..+.+.+..+. ||+.+|..++++|+|.. +++
T Consensus 378 -------g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-gH~~RVl~la~SPdg~~-i~t 448 (484)
T KOG0305|consen 378 -------GARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-GHTSRVLYLALSPDGET-IVT 448 (484)
T ss_pred -------CcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec-CCcceeEEEEECCCCCE-EEE
Confidence 45677777889999999999986565553 35789999999999999999 89999999999999996 789
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
|+.|.++|.
T Consensus 449 ~a~DETlrf 457 (484)
T KOG0305|consen 449 GAADETLRF 457 (484)
T ss_pred ecccCcEEe
Confidence 999999884
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.7e-16 Score=157.33 Aligned_cols=141 Identities=18% Similarity=0.306 Sum_probs=120.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|++| |...+++|..|.+|+|||.++..+... +.||++.|.|+.|.. ..++|||.|.+|++||+++
T Consensus 200 VYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~~--L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t----- 266 (499)
T KOG0281|consen 200 VYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLKI--LTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT----- 266 (499)
T ss_pred eEEEEe---cchhhhcccccCceEEeccccHHHHHh--hhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC-----
Confidence 667888 557999999999999999998777664 459999999999974 5899999999999999999
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce---eEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP---LQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~---v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
..++.++-|| ..|..+.|+ .++++|+|.|.++++||+..... .+++. ||..+|+.+.|+ ++ ++++
T Consensus 267 -----ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd--~k-yIVs 335 (499)
T KOG0281|consen 267 -----GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD--DK-YIVS 335 (499)
T ss_pred -----CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccc--cc-eEEE
Confidence 5678877776 559999987 78999999999999999987643 34555 899999999996 34 5899
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
+|+|.+||.
T Consensus 336 ASgDRTikv 344 (499)
T KOG0281|consen 336 ASGDRTIKV 344 (499)
T ss_pred ecCCceEEE
Confidence 999999985
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=163.84 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=129.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC-CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG-GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g-H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|+++.|++ +|++||+|..+|.|.|||.++.+.+..+. + |...|-+++|.. ..+.+|+.|+.|..+|++....
T Consensus 220 vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~--~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~- 292 (484)
T KOG0305|consen 220 VTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLR--GSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQH- 292 (484)
T ss_pred eEEEEECC-CCCEEEEeecCCeEEEEehhhcccccccc--CCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchh-
Confidence 88999999 99999999999999999999888887765 5 999999999984 5899999999999999998432
Q ss_pred cccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...++.+| ..|+.++|++++.++|+||.|+.+.|||....++...+. .|..+|.+++|+|....+||+|+
T Consensus 293 --------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 293 --------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred --------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeeeCCCccCceEEcC
Confidence 22236655 559999999999999999999999999998888888888 69999999999999999999865
Q ss_pred C--CCeEE
Q 035500 598 L--TTMSR 603 (606)
Q Consensus 598 ~--DgtIR 603 (606)
+ |++|+
T Consensus 364 Gs~D~~i~ 371 (484)
T KOG0305|consen 364 GSADRCIK 371 (484)
T ss_pred CCcccEEE
Confidence 4 66665
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-15 Score=163.21 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=135.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|+++|| |+.++|.|=.|.+|+||-+.+-+.. +.+.||+=+|.++..+| ++..++|||.|++|++|-+.-+
T Consensus 511 vL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFf--lsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFG---- 582 (888)
T KOG0306|consen 511 VLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFF--LSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFG---- 582 (888)
T ss_pred EEEEEEcC-CCcEEEEEeccCeEEEEEecceeee--eeecccccceeEEeccC-CcCeEEeccCCCceEEeccccc----
Confidence 88999999 9999999999999999999876654 45669999999999999 6799999999999999999874
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.|-+++- |.++|.+|.|-|....|.|+|.|+.|+-||-..-+.++.+. +|...|++++..|+|.+ ++++|.
T Consensus 583 ------DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-~H~~ev~cLav~~~G~~-vvs~sh 654 (888)
T KOG0306|consen 583 ------DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-GHHSEVWCLAVSPNGSF-VVSSSH 654 (888)
T ss_pred ------hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-cchheeeeeEEcCCCCe-EEeccC
Confidence 4555554 56779999999999999999999999999999999999999 89999999999999996 789999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|.+||+
T Consensus 655 D~sIRl 660 (888)
T KOG0306|consen 655 DKSIRL 660 (888)
T ss_pred CceeEe
Confidence 999997
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=143.31 Aligned_cols=159 Identities=19% Similarity=0.162 Sum_probs=132.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++++.|+. +|++|.+++.|.++.||-.-+|+.+.++. ||+++|+++..+. ....+++||.|.++++||+.+++..-
T Consensus 13 lTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~--GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la 88 (327)
T KOG0643|consen 13 LTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYD--GHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLA 88 (327)
T ss_pred cceEEecC-CCcEEEEecCCCCceEEEecCCceeeeec--CCCceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEE
Confidence 77888999 99999999999999999998899999877 9999999999886 66899999999999999999874310
Q ss_pred --------c-----------------------------------cccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCC
Q 035500 520 --------A-----------------------------------DARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYS 555 (606)
Q Consensus 520 --------~-----------------------------------~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~D 555 (606)
. ......|..... ..+.++.+-|.|.++.+++|..|
T Consensus 89 ~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 89 TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC
Confidence 0 001233444444 34558899999999999999999
Q ss_pred CcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 556 KNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 556 g~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|.|.+||+++++. +..-+ .|...|+.++++|+..+ |+|||.|.+.+.
T Consensus 169 G~is~~da~~g~~~v~s~~-~h~~~Ind~q~s~d~T~-FiT~s~Dttakl 216 (327)
T KOG0643|consen 169 GSISIYDARTGKELVDSDE-EHSSKINDLQFSRDRTY-FITGSKDTTAKL 216 (327)
T ss_pred CcEEEEEcccCceeeechh-hhccccccccccCCcce-EEecccCcccee
Confidence 9999999999866 44445 69999999999999985 899999988764
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=151.21 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=131.1
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
.++..+.++| +...+++++.|-.|+||.......... ...|..+|+.+..+| .+.+|+++|.||+..+.|++.+
T Consensus 262 kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~--~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g-- 335 (506)
T KOG0289|consen 262 KKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTS--SRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSG-- 335 (506)
T ss_pred eEEEEEEecc-chhheeecCCcceEEeeccccccCccc--cccccccceeeeecc-CCcEEEEecCCceEEEEEccCC--
Confidence 3578899999 888999999999999999876654443 348999999999999 6799999999999999999984
Q ss_pred CcccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 518 KVADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
..+....+. -.+++.+|||||-+|++|..|+.|+|||+..+..+..|+ +|+++|..++|+-+|= .+|
T Consensus 336 --------~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENGY-~La 405 (506)
T KOG0289|consen 336 --------SQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENGY-WLA 405 (506)
T ss_pred --------cEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEeccCce-EEE
Confidence 344444443 338999999999999999999999999999999999999 7999999999998875 589
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
++..|+.|+|
T Consensus 406 t~add~~V~l 415 (506)
T KOG0289|consen 406 TAADDGSVKL 415 (506)
T ss_pred EEecCCeEEE
Confidence 9999998887
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.9e-15 Score=154.58 Aligned_cols=165 Identities=21% Similarity=0.208 Sum_probs=126.8
Q ss_pred eceeEEEEcCCCC-CEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 438 VRPRQFEYNPSNP-SLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 438 ~rV~slafsP~dg-~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
-||.+++|||... +++|+|..-|+|-+||+.+ ...-..+.+.+|.++|.++.|+|.+...+++.|.||+|++-|++.
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 3689999999666 8999999999999999952 222334456799999999999999999999999999999999986
Q ss_pred CCCCc-------ccc-------------------c---------CCcceEEee-cCCCeEEEEEccCC-CEEEEEeCCCc
Q 035500 515 IPPKV-------ADA-------------------R---------GNSSVATYY-DFEQLTSVHVNSTD-DQFLASGYSKN 557 (606)
Q Consensus 515 ~~~~~-------~~l-------------------~---------~~~~i~t~~-~~~~V~sV~~sp~g-~~LaSgs~Dg~ 557 (606)
..... ..+ . .+.....+. |+..|++|++||.. .++||+|.|++
T Consensus 267 ~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T 346 (498)
T KOG4328|consen 267 NISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT 346 (498)
T ss_pred hhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc
Confidence 42100 000 0 000011111 34569999999997 58999999999
Q ss_pred EEEEECCCC--ce---eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 558 VALYDINTE--KP---LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 558 I~IWDlrt~--k~---v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
++|||+|.- +. +..+ .|+..|+++.|+|.+.. ++|.+.|..||+.
T Consensus 347 ~kIWD~R~l~~K~sp~lst~--~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 347 AKIWDLRQLRGKASPFLSTL--PHRRSVNSAYFSPSGGT-LLTTCQDNEIRVF 396 (498)
T ss_pred eeeeehhhhcCCCCcceecc--cccceeeeeEEcCCCCc-eEeeccCCceEEe
Confidence 999999953 32 3344 49999999999999998 8899999999863
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-14 Score=142.44 Aligned_cols=146 Identities=12% Similarity=0.146 Sum_probs=126.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe------------------------------------------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP------------------------------------------ 477 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~------------------------------------------ 477 (606)
|-+++|+|..++.+++++.|.+|++||+.+++++....
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~ 146 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF 146 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc
Confidence 66788999899999999999999999988877754332
Q ss_pred --------------------------------------ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 478 --------------------------------------SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 478 --------------------------------------~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
...|.....||.|+| .+++||+||.|..+-+||+..
T Consensus 147 ~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~E----- 220 (313)
T KOG1407|consen 147 KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDE----- 220 (313)
T ss_pred cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhH-----
Confidence 134888899999999 679999999999999999998
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
-.|++.+.. .-+|..++|+.+|+++|+||.|..|-|-++.+|..+..++ |.++-+.|+|+|... |||-+..
T Consensus 221 -----LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~-LLAyA~d 292 (313)
T KOG1407|consen 221 -----LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRP-LLAYACD 292 (313)
T ss_pred -----hhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--ccCCceeEEecCCCc-eeeEEec
Confidence 457777774 6779999999999999999999999999999999999998 899999999999987 6666555
Q ss_pred C
Q 035500 599 T 599 (606)
Q Consensus 599 D 599 (606)
|
T Consensus 293 d 293 (313)
T KOG1407|consen 293 D 293 (313)
T ss_pred C
Confidence 5
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=164.98 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=131.1
Q ss_pred eeEEEEcCCCCCEEEEEe--CCCcEEEEECCCC--------c--eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeE
Q 035500 440 PRQFEYNPSNPSLMAFGT--LDGEVIVINHENG--------N--VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs--~DGtVrIWDi~tg--------~--~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtI 507 (606)
+-+++.|| ++..+|||+ .||.++||+.+.- . .........|.+.|.|+.|+| ++.+||+||+|+.|
T Consensus 16 IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 16 IFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLV 93 (942)
T ss_pred EEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEeeccCcceE
Confidence 67899999 999999999 9999999996430 0 001112348999999999999 78999999999999
Q ss_pred EEEeCCCCCC--------CcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC
Q 035500 508 RLFDLNHIPP--------KVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHRE 578 (606)
Q Consensus 508 klWDl~~~~~--------~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~ 578 (606)
-+|+...... .......-+.+..+.+| ..|.++.|+|++.+++++|.|++|.||+.++.+.+..+. +|.+
T Consensus 94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-~H~s 172 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-GHQS 172 (942)
T ss_pred EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee-cccc
Confidence 9999873100 00011112355667655 559999999999999999999999999999999999999 8999
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 579 PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|-.+.|.|.|+| ||+-+.|++++.
T Consensus 173 ~VKGvs~DP~Gky-~ASqsdDrtikv 197 (942)
T KOG0973|consen 173 LVKGVSWDPIGKY-FASQSDDRTLKV 197 (942)
T ss_pred cccceEECCccCe-eeeecCCceEEE
Confidence 9999999999997 899999999985
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=154.33 Aligned_cols=156 Identities=14% Similarity=0.233 Sum_probs=126.3
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEE----------eccCCCCCEEEEEEeeCCCCEEEEEECCCeE
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYI----------PSIGGTNSVLGLCWLKKYPSKLVAGSDSGCV 507 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~----------~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtI 507 (606)
+.+++++|+| .++.|++.+.....+|+|-......... ...||...+++.+|+|.+...|+|+|.||++
T Consensus 215 h~i~sl~ys~-Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 215 HQINSLQYSV-TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred cccceeeecC-CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 4588999999 7888888888889999996543333222 2468999999999999988899999999999
Q ss_pred EEEeCCCCCCCcccccCCcceEEeec------CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCC-
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYD------FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE--KPLQLFTDMHRE- 578 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~------~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~- 578 (606)
++||++..+. ....+.+ .-++++++|+|+|++||+|..||.|.+||.+.. .+...+..+|..
T Consensus 294 RiWdv~~~k~---------q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 294 RIWDVNNTKS---------QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG 364 (641)
T ss_pred EEEecCCchh---------heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC
Confidence 9999998532 3333332 244899999999999999999999999998743 456666668987
Q ss_pred -CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 579 -PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 579 -~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|++|+|+++|.+ |++-|.|.+.|.
T Consensus 365 ~~Itsi~FS~dg~~-LlSRg~D~tLKv 390 (641)
T KOG0772|consen 365 QDITSISFSYDGNY-LLSRGFDDTLKV 390 (641)
T ss_pred CceeEEEeccccch-hhhccCCCceee
Confidence 9999999999995 789999988764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=159.89 Aligned_cols=148 Identities=15% Similarity=0.161 Sum_probs=126.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..+.||. + ++|.++|-|.|||+|++....++..| .|.+.|+|++|+|.++++|+|||.||.|+||++...
T Consensus 372 ILDlSWSK-n-~fLLSSSMDKTVRLWh~~~~~CL~~F---~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~---- 442 (712)
T KOG0283|consen 372 ILDLSWSK-N-NFLLSSSMDKTVRLWHPGRKECLKVF---SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK---- 442 (712)
T ss_pred heeccccc-C-CeeEeccccccEEeecCCCcceeeEE---ecCCeeEEEEecccCCCcEeecccccceEEeecCcC----
Confidence 78889986 4 59999999999999999999999877 799999999999999999999999999999999872
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC--------CCCCCeEEEEEeCCCC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD--------MHREPINVAKFSHHSP 590 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~--------gH~~~I~sV~fsP~g~ 590 (606)
.+..+. -+.-|+++++.|+|+..+.|+.+|.+++|+++..+.+..+.. .|. .|+.+.|.|..+
T Consensus 443 -------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 443 -------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDP 514 (712)
T ss_pred -------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCC
Confidence 344444 367799999999999999999999999999998776554431 133 799999999887
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
.-++..|.|..||+
T Consensus 515 ~~vLVTSnDSrIRI 528 (712)
T KOG0283|consen 515 DEVLVTSNDSRIRI 528 (712)
T ss_pred CeEEEecCCCceEE
Confidence 76777888999986
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=142.74 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=130.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|-+++.+| +.+++|||+.|-.-.+|++.+|.... .+.+|+..|+++.|+. ++.+||||..+|.|+||+..++.
T Consensus 67 vFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~--eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~--- 139 (399)
T KOG0296|consen 67 VFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAG--ELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGG--- 139 (399)
T ss_pred eEEEEeCC-CCceEEecCCCceEEEEEccCCccee--EecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccCc---
Confidence 66889999 88999999999999999999999655 4559999999999996 78999999999999999999842
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
....+. .-..+.=+.|||.+.++++|+.||.+-+|.+.++...+.+. ||..++++-.|.|+|+. ++++..
T Consensus 140 -------~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGKr-~~tgy~ 210 (399)
T KOG0296|consen 140 -------EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGKR-ILTGYD 210 (399)
T ss_pred -------eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCce-EEEEec
Confidence 222332 34457889999999999999999999999999988888898 89999999999999985 789999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++||.
T Consensus 211 dgti~~ 216 (399)
T KOG0296|consen 211 DGTIIV 216 (399)
T ss_pred CceEEE
Confidence 999985
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-14 Score=153.96 Aligned_cols=152 Identities=16% Similarity=0.230 Sum_probs=128.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce--EE------EEecc-CCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV--AC------YIPSI-GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~--v~------~~~~~-gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
|.|+++-..+..++|+||.|+.|.+||++++.. +. .-.+. |++.+|++++-++ .+..+++||..+.+++|
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLW 198 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEe
Confidence 788899333888999999999999999998733 21 11223 8999999999997 56899999999999999
Q ss_pred eCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 511 DLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
|.++. ..+..+++| ..|..+-.+++|..++|+|.||+|++||++..+++.++. .|+..|+++.-+|+-
T Consensus 199 Dprt~----------~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 199 DPRTC----------KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-VHKEGVWALQSSPSF 267 (735)
T ss_pred ccccc----------cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE-eccCceEEEeeCCCc
Confidence 99994 345566655 559999999999999999999999999999999999999 799999999999988
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
.+ +.+|+.||.|-+
T Consensus 268 ~~-vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 268 TH-VYSGGRDGNIYR 281 (735)
T ss_pred ce-EEecCCCCcEEe
Confidence 86 778888887643
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-14 Score=148.81 Aligned_cols=148 Identities=14% Similarity=0.209 Sum_probs=125.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|+|.+|+|.++.+++|||+||+||+||.++. ..+..+ .|..+|-.+.+.| ++.+++|+|.. .||+||+.++.
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el---nhg~pVe~vl~lp-sgs~iasAgGn-~vkVWDl~~G~-- 228 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL---NHGCPVESVLALP-SGSLIASAGGN-SVKVWDLTTGG-- 228 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe---cCCCceeeEEEcC-CCCEEEEcCCC-eEEEEEecCCc--
Confidence 8999999999999999999999999999875 333332 7888999999998 67889888754 79999999753
Q ss_pred cccccCCcceE-EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVA-TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~-t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..+. ...|+..|+|+.+..++..++|||-|+.|++||+.+-+.+..+. -.++|.+++.+|++.. ++.|-
T Consensus 229 -------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t-~viGm 298 (487)
T KOG0310|consen 229 -------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQT-VVIGM 298 (487)
T ss_pred -------eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--cccceeeEEecCCCce-EEEec
Confidence 2233 33478889999999999999999999999999988888888887 4899999999999885 77888
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.||.+-.
T Consensus 299 snGlv~~ 305 (487)
T KOG0310|consen 299 SNGLVSI 305 (487)
T ss_pred ccceeee
Confidence 8987754
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-14 Score=142.32 Aligned_cols=161 Identities=14% Similarity=0.187 Sum_probs=129.3
Q ss_pred ccCceeeceeEEEE-cCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCC-CEEEEEECCCeEEE
Q 035500 432 KEGNKRVRPRQFEY-NPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYP-SKLVAGSDSGCVRL 509 (606)
Q Consensus 432 ~~G~~~~rV~slaf-sP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~-~~LaSgS~DgtIkl 509 (606)
|.|. |..++| ||.-|.+||++++||.|.||.-++|+-........|...|++++|.|... -.|+++|.||.|.+
T Consensus 55 h~GP----Vwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv 130 (299)
T KOG1332|consen 55 HSGP----VWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV 130 (299)
T ss_pred CCCC----eeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence 3476 888889 78899999999999999999999887776666779999999999998653 45889999999999
Q ss_pred EeCCCCCCCcccccCCcceEE-eecCCCeEEEEEccC---C-----------CEEEEEeCCCcEEEEECCCCc--eeEEE
Q 035500 510 FDLNHIPPKVADARGNSSVAT-YYDFEQLTSVHVNST---D-----------DQFLASGYSKNVALYDINTEK--PLQLF 572 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t-~~~~~~V~sV~~sp~---g-----------~~LaSgs~Dg~I~IWDlrt~k--~v~~l 572 (606)
.+++.... ....+. .-|.-.|++|+|.|. | ..|+|||.|+.|+||+...++ .-+.+
T Consensus 131 l~~~~~g~-------w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l 203 (299)
T KOG1332|consen 131 LTYDSSGG-------WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL 203 (299)
T ss_pred EEEcCCCC-------ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh
Confidence 99987421 111112 224455999999987 3 469999999999999999863 34457
Q ss_pred cCCCCCCeEEEEEeCCC---CeEEEEEeCCCeEEE
Q 035500 573 TDMHREPINVAKFSHHS---PLCLLLLHLTTMSRC 604 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g---~~LLaTgS~DgtIRc 604 (606)
. +|++-|+.++|.|.- ...+|+||.||++-+
T Consensus 204 ~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 204 E-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred h-hcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 7 899999999999964 457899999998754
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=149.54 Aligned_cols=147 Identities=15% Similarity=0.175 Sum_probs=122.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE-----EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC-----YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~-----~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
|..++|+|.+.+.||+||.|.+|.||.+..+.... ...+.||...|--++|+|.-.+.|+|+|.|.+|.+|++.+
T Consensus 84 vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t 163 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT 163 (472)
T ss_pred ccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC
Confidence 77899999999999999999999999987543321 3346699999999999998888999999999999999999
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC-eEEEEEeCCCCeEE
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP-INVAKFSHHSPLCL 593 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~-I~sV~fsP~g~~LL 593 (606)
+ ..+.++.|.+.|.+++|+.+|.++++++.|+.|+|||.|+++.+.+-. +|.+. -..+-|-.++. ++
T Consensus 164 g----------eali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~-i~ 231 (472)
T KOG0303|consen 164 G----------EALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGK-IF 231 (472)
T ss_pred C----------ceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCc-ee
Confidence 4 446667788889999999999999999999999999999999998886 68754 33455666666 44
Q ss_pred EEEeCC
Q 035500 594 LLLHLT 599 (606)
Q Consensus 594 aTgS~D 599 (606)
|.+..
T Consensus 232 -tTGfs 236 (472)
T KOG0303|consen 232 -TTGFS 236 (472)
T ss_pred -eeccc
Confidence 44443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-15 Score=149.47 Aligned_cols=150 Identities=15% Similarity=0.249 Sum_probs=130.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|+.|+. |...+|+|+.||.|+||.+++|.++..+. ..|...|+++.|+. ++..++|+|.|.++++.-+.+
T Consensus 266 Vlci~FSR-DsEMlAsGsqDGkIKvWri~tG~ClRrFd-rAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKS----- 337 (508)
T KOG0275|consen 266 VLCISFSR-DSEMLASGSQDGKIKVWRIETGQCLRRFD-RAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKS----- 337 (508)
T ss_pred eEEEeecc-cHHHhhccCcCCcEEEEEEecchHHHHhh-hhhccCeeEEEEcc-CcchhhcccccceEEEecccc-----
Confidence 88999999 99999999999999999999999998775 48999999999998 567899999999999999988
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-CCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM-HREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g-H~~~I~sV~fsP~g~~LLaTgS 597 (606)
.++++.+++|.. |+...|.++|..++++|.||+|++|+..+.+++.+|+.+ ..-+|+++-.-|..+.-++.|.
T Consensus 338 -----GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 338 -----GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred -----chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 457888888766 999999999999999999999999999999998888732 4567888888887766666666
Q ss_pred CCCeE
Q 035500 598 LTTMS 602 (606)
Q Consensus 598 ~DgtI 602 (606)
...+|
T Consensus 413 rsntv 417 (508)
T KOG0275|consen 413 RSNTV 417 (508)
T ss_pred CCCeE
Confidence 55544
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=142.99 Aligned_cols=158 Identities=13% Similarity=0.147 Sum_probs=131.0
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc-
Q 035500 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV- 519 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~- 519 (606)
.=+.||| .+.++++|+.||.|.+|.+.++...+.+. ||..++++=.|.| ++.+++++..||+|++|+..++.+..
T Consensus 152 eWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~--Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~ 227 (399)
T KOG0296|consen 152 EWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMS--GHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHK 227 (399)
T ss_pred EEEEecc-cccEEEeecCCCcEEEEECCCcceeeEec--CCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEE
Confidence 3477999 89999999999999999999877777666 9999999999999 58999999999999999998752210
Q ss_pred -------------------------------------------cc--c-------------------------------c
Q 035500 520 -------------------------------------------AD--A-------------------------------R 523 (606)
Q Consensus 520 -------------------------------------------~~--l-------------------------------~ 523 (606)
.+ . .
T Consensus 228 ~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vd 307 (399)
T KOG0296|consen 228 ITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVD 307 (399)
T ss_pred ecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccccc
Confidence 00 0 0
Q ss_pred ---------CCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 524 ---------GNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 524 ---------~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
....-..+.|..+|..+.|-+ ..++++++.+|+|+.||.|+|+...++. ||...|.+++++|+.+ +++
T Consensus 308 G~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~-GH~~~Il~f~ls~~~~-~vv 384 (399)
T KOG0296|consen 308 GTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT-GHQMGILDFALSPQKR-LVV 384 (399)
T ss_pred ceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe-cCchheeEEEEcCCCc-EEE
Confidence 001112333556799999988 7899999999999999999999999999 8999999999999988 689
Q ss_pred EEeCCCeEEEc
Q 035500 595 LLHLTTMSRCG 605 (606)
Q Consensus 595 TgS~DgtIRc~ 605 (606)
|+|.|++.+.+
T Consensus 385 T~s~D~~a~VF 395 (399)
T KOG0296|consen 385 TVSDDNTALVF 395 (399)
T ss_pred EecCCCeEEEE
Confidence 99999998864
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.2e-14 Score=141.02 Aligned_cols=160 Identities=15% Similarity=0.233 Sum_probs=124.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.|+.|++ .|.++|+|..||.|-|||+.|......+. +|..+|.+++|++ ++++|+|+|.|..|++||+..+....
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~ls--aH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLS--AHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhh--ccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCcee
Confidence 66889999 99999999999999999999988776655 9999999999998 67999999999999999998864211
Q ss_pred c-----------------------cccCCcceEEee-------c---CCC----eEEEEEccCCCEEEEEeCCCcEEEEE
Q 035500 520 A-----------------------DARGNSSVATYY-------D---FEQ----LTSVHVNSTDDQFLASGYSKNVALYD 562 (606)
Q Consensus 520 ~-----------------------~l~~~~~i~t~~-------~---~~~----V~sV~~sp~g~~LaSgs~Dg~I~IWD 562 (606)
. .+...+.+..+. . ... ..+..|.+.|+++++|...|.+.+||
T Consensus 102 rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 102 RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 0 000000111111 0 011 12234778899999999999999999
Q ss_pred CCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 563 INTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 563 lrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+-+.+..++......|..+.|+-.|.. ++.-+.|++||.
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~-liiNtsDRvIR~ 222 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRF-LIINTSDRVIRT 222 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcE-EEEecCCceEEE
Confidence 99999998888433378999999998885 778888999985
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=145.54 Aligned_cols=152 Identities=15% Similarity=0.267 Sum_probs=127.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++.||| ...+|++|+.|++|++||.......+.++......+|.++.|+| .+..++.|.+-.++++||+++.
T Consensus 175 vn~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~---- 248 (430)
T KOG0640|consen 175 VNDLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTY---- 248 (430)
T ss_pred ccceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccce----
Confidence 78899999 77899999999999999987644433333334456799999999 6789999999999999999983
Q ss_pred ccccCCcceEE----eecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC-CeEEEEEeCCCCeEEE
Q 035500 520 ADARGNSSVAT----YYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHRE-PINVAKFSHHSPLCLL 594 (606)
Q Consensus 520 ~~l~~~~~i~t----~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~-~I~sV~fsP~g~~LLa 594 (606)
++... -+|...|++|.+++.+++.++||.||.|++||--+++++.++..+|.+ .|.+..|..++++ +.
T Consensus 249 ------QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky-iL 321 (430)
T KOG0640|consen 249 ------QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY-IL 321 (430)
T ss_pred ------eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE-Ee
Confidence 23222 235577999999999999999999999999999999999999988864 7899999999997 55
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
++|.|.+|+.
T Consensus 322 sSG~DS~vkL 331 (430)
T KOG0640|consen 322 SSGKDSTVKL 331 (430)
T ss_pred ecCCcceeee
Confidence 7788988863
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=143.47 Aligned_cols=150 Identities=12% Similarity=0.171 Sum_probs=126.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+.+..+| .|.|+++++.||+.-+.|+++|.........+..-.+++.+|+| ++-+|.+|+.||.+++||+...
T Consensus 306 V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~---- 379 (506)
T KOG0289|consen 306 VTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQ---- 379 (506)
T ss_pred ceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCc----
Confidence 77889999 99999999999999999999999887655333344589999999 6789999999999999999984
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.-+..|.+| ++|..|+|+.+|-+++++.+|+.|++||+|..+..+++.......|.++.|.+.|.+ ++.+|.
T Consensus 380 ------~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~-L~~~g~ 452 (506)
T KOG0289|consen 380 ------TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTY-LGIAGS 452 (506)
T ss_pred ------cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCe-EEeecc
Confidence 345566654 669999999999999999999999999999998888887545557999999999997 555566
Q ss_pred CCeE
Q 035500 599 TTMS 602 (606)
Q Consensus 599 DgtI 602 (606)
|-.|
T Consensus 453 ~l~V 456 (506)
T KOG0289|consen 453 DLQV 456 (506)
T ss_pred eeEE
Confidence 6443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=140.25 Aligned_cols=149 Identities=11% Similarity=0.190 Sum_probs=121.9
Q ss_pred cccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEE
Q 035500 431 YKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRL 509 (606)
Q Consensus 431 ~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIkl 509 (606)
.|.|. ++++|. ++.++|+||.|-+|+|||+++......+- .|.+.|+++.|.+.. .+.|+||++||.|.+
T Consensus 41 aH~~s----itavAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll--~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 41 AHAGS----ITALAV---SGPYVASGSSDETIHIYDMRKRKQLGILL--SHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccc----eeEEEe---cceeEeccCCCCcEEEEeccchhhhccee--ccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 35565 788888 55799999999999999999887776554 899999999998632 237999999999999
Q ss_pred EeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 510 FDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
|+... ...+.+++. ..+|+.++.||.+.+-++.|.|+.++.|++-+|+.-..++..|... .|.|+|.
T Consensus 112 w~~~~----------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at--~v~w~~~ 179 (362)
T KOG0294|consen 112 WRVGS----------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT--LVSWSPQ 179 (362)
T ss_pred EEcCC----------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce--eeEEcCC
Confidence 99998 456777874 5669999999999999999999999999999998877776544443 4999999
Q ss_pred CCeEEEEEeCCCe
Q 035500 589 SPLCLLLLHLTTM 601 (606)
Q Consensus 589 g~~LLaTgS~Dgt 601 (606)
|.+ |+.++.+++
T Consensus 180 Gd~-F~v~~~~~i 191 (362)
T KOG0294|consen 180 GDH-FVVSGRNKI 191 (362)
T ss_pred CCE-EEEEeccEE
Confidence 996 555555543
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=144.13 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=122.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|..+.||+ +|.++|+|+.|.+.-||++..... .....+.||..+|..+.|+| +++++++|+.|..+.+||+.++.
T Consensus 227 VWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd-- 302 (519)
T KOG0293|consen 227 VWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGD-- 302 (519)
T ss_pred EEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcch--
Confidence 88999999 999999999999999999754333 22445669999999999999 66899999999999999999953
Q ss_pred cccccCCcceEEeec--CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVATYYD--FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~--~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
....+.+ ...+.+++|.|+|..|++||.|+++..||+. |+.....+......|.+++..++|+++++.+
T Consensus 303 --------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 303 --------LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred --------hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 3444443 3568999999999999999999999999997 4445555533446799999999999976665
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
.|..||.
T Consensus 374 -~d~~i~l 380 (519)
T KOG0293|consen 374 -VDKKIRL 380 (519)
T ss_pred -cccceee
Confidence 6776664
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-14 Score=165.96 Aligned_cols=158 Identities=21% Similarity=0.329 Sum_probs=127.5
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
|.|. |+.+.|+|..++++|+|+.||.|.|||+.+-+.-.......-.+.|.+++|+......|+|++.+|.+-|||
T Consensus 115 h~G~----V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 115 HTGP----VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred cCCc----eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 5575 889999998888999999999999999986322111111124578999999987788899999999999999
Q ss_pred CCCCCCCcccccCCcceEEeecC---CCeEEEEEccCC-CEEEEEeCC---CcEEEEECCCC-ceeEEEcCCCCCCeEEE
Q 035500 512 LNHIPPKVADARGNSSVATYYDF---EQLTSVHVNSTD-DQFLASGYS---KNVALYDINTE-KPLQLFTDMHREPINVA 583 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~~---~~V~sV~~sp~g-~~LaSgs~D---g~I~IWDlrt~-k~v~~l~~gH~~~I~sV 583 (606)
++. ++++..+..+ ..+..++|||+. ..++++++| -.|.+||+|.. .++++++ +|...|.++
T Consensus 191 lr~----------~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~-~H~~Gilsl 259 (1049)
T KOG0307|consen 191 LRK----------KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE-GHQRGILSL 259 (1049)
T ss_pred ccC----------CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc-ccccceeee
Confidence 998 4456555543 338899999997 456666554 57999999964 5688887 799999999
Q ss_pred EEeCCCCeEEEEEeCCCeEEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|++.+..++++++.|+.|-|
T Consensus 260 sWc~~D~~lllSsgkD~~ii~ 280 (1049)
T KOG0307|consen 260 SWCPQDPRLLLSSGKDNRIIC 280 (1049)
T ss_pred ccCCCCchhhhcccCCCCeeE
Confidence 999999889999999999877
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-13 Score=149.45 Aligned_cols=148 Identities=14% Similarity=0.256 Sum_probs=130.3
Q ss_pred eceeEEEEcCCCCCEEEEEeCC-CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLD-GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~D-GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
.++.+++|+. .|+++|.|+.. |++-||++++...+...+ ||-..+.+++++| ++..+++|++||.|||||...
T Consensus 308 ~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQQ--gH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~S-- 381 (893)
T KOG0291|consen 308 QKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQQ--GHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQS-- 381 (893)
T ss_pred ceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeecc--ccccceeeEEECC-CCcEEEeccCCCcEEEEeccC--
Confidence 3478889998 89999999875 899999999877766544 9999999999999 678999999999999999998
Q ss_pred CCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 517 PKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.-|+.+|..| ..|+.++|+..|+.++++|-||+|+.||+.+.+..++|..+..-...|++..|.|. ++.+
T Consensus 382 --------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~A 452 (893)
T KOG0291|consen 382 --------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCA 452 (893)
T ss_pred --------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEe
Confidence 5789999965 55999999999999999999999999999999999999865666778899999998 6778
Q ss_pred EeCCC
Q 035500 596 LHLTT 600 (606)
Q Consensus 596 gS~Dg 600 (606)
|+.|.
T Consensus 453 G~~d~ 457 (893)
T KOG0291|consen 453 GAQDS 457 (893)
T ss_pred eccce
Confidence 87774
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=138.88 Aligned_cols=152 Identities=13% Similarity=0.209 Sum_probs=120.3
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-EEEEe---ccCCCCCEEEEEEee-CCCCEEEEEECCCeEEEEeCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-ACYIP---SIGGTNSVLGLCWLK-KYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~---~~gH~~~V~~L~fsp-~~~~~LaSgS~DgtIklWDl~ 513 (606)
++.|+.|.| ++..+|+-. |..|.+|++..+.. +..+. ..+|....++-+|+| .+++.+++ ..|+++..||++
T Consensus 125 ~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~R 201 (370)
T KOG1007|consen 125 KINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLR 201 (370)
T ss_pred ceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEcc
Confidence 488999999 888888876 78899999987655 22222 124666788899999 45555555 458999999999
Q ss_pred CCCCCcccccCCcceEEee-cC-CCeEEEEEccCCC-EEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSSVATYY-DF-EQLTSVHVNSTDD-QFLASGYSKNVALYDINT-EKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-~~-~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt-~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
++. ....+. .| ..|.++.|+|..+ +++|+|+||.|+|||.|+ ..++.+++ +|...|++|.|+|..
T Consensus 202 T~~----------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 202 TMK----------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEH 270 (370)
T ss_pred chh----------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCcc
Confidence 853 222222 34 4499999999975 899999999999999995 56789999 899999999999999
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
..++.|||.|..|..
T Consensus 271 dqLiLs~~SDs~V~L 285 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNL 285 (370)
T ss_pred ceEEEecCCCceeEE
Confidence 999999999987753
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.5e-14 Score=151.47 Aligned_cols=152 Identities=20% Similarity=0.203 Sum_probs=124.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc--eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGN--VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNS 526 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~--~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~ 526 (606)
+++.++++|.|-+|++|+...+. +..++ ..|++.|.+++....+..+++|||.|+.|.+||++.+......-....
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~sti--r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDNTFCMSTI--RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred CCCceEEecCCceEEEeecccCcchhHhhh--hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc
Confidence 77899999999999999998763 44443 489999999999444678999999999999999997633110000011
Q ss_pred ceEEe--ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 527 SVATY--YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 527 ~i~t~--~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+...+ .++.+|.+++.++.|..+++||..+.+++||.++++.+..+. ||+..|.++-.+++|.. +.+||.||+||.
T Consensus 162 t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~-~ls~sSDgtIrl 239 (735)
T KOG0308|consen 162 TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTR-LLSASSDGTIRL 239 (735)
T ss_pred ccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCe-EeecCCCceEEe
Confidence 22222 246779999999999999999999999999999999999999 89999999999999996 779999999985
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-13 Score=136.37 Aligned_cols=159 Identities=15% Similarity=0.243 Sum_probs=124.5
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEE
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLF 510 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklW 510 (606)
++|. |.+++|+. +|..+++|+.|+++++||+.+++... + ..|.++|..+.|-+.. ...|+|||.|++||+|
T Consensus 71 ~~~P----vL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~Q~~~-v--~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 71 HDGP----VLDVCWSD-DGSKVFSGGCDKQAKLWDLASGQVSQ-V--AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred cCCC----eEEEEEcc-CCceEEeeccCCceEEEEccCCCeee-e--eecccceeEEEEecCCCcceeEecccccceeec
Confidence 5565 88999998 99999999999999999999996553 3 3899999999997622 2378999999999999
Q ss_pred eCCCCCCCc-------------------------------------------ccc-------------------------
Q 035500 511 DLNHIPPKV-------------------------------------------ADA------------------------- 522 (606)
Q Consensus 511 Dl~~~~~~~-------------------------------------------~~l------------------------- 522 (606)
|.+...+.. +++
T Consensus 143 D~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv 222 (347)
T KOG0647|consen 143 DTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV 222 (347)
T ss_pred ccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence 998753210 000
Q ss_pred -----cCC--cceEEeecC----------CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 523 -----RGN--SSVATYYDF----------EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 523 -----~~~--~~i~t~~~~----------~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
... ..-.+|+.| .+|++|+|||.-..|+|+|.||+..+||-.....+...+ .|..+|++.+|
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~-~~~qpItcc~f 301 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE-THPQPITCCSF 301 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC-cCCCccceeEe
Confidence 000 111233322 238899999999999999999999999999888888877 69999999999
Q ss_pred eCCCCeEEEEEeCC
Q 035500 586 SHHSPLCLLLLHLT 599 (606)
Q Consensus 586 sP~g~~LLaTgS~D 599 (606)
+.+|..+..+.|.|
T Consensus 302 n~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 302 NRNGSIFAYALGYD 315 (347)
T ss_pred cCCCCEEEEEeecc
Confidence 99999766666766
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=134.66 Aligned_cols=148 Identities=13% Similarity=0.098 Sum_probs=118.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCce-EEEEeccCCCCCEEEEEE-eeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNV-ACYIPSIGGTNSVLGLCW-LKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNS 526 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~~~gH~~~V~~L~f-sp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~ 526 (606)
-|..|||++.|++||||..+.... .....+.||.++|+.++| +|..+.+|+|||.||.|-||.-..+. -.
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~--------w~ 93 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR--------WT 93 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc--------hh
Confidence 678999999999999999986443 445567799999999999 67788999999999999999877641 11
Q ss_pred ceEEee-cCCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCeEEEEEeCC---C---------
Q 035500 527 SVATYY-DFEQLTSVHVNSTD--DQFLASGYSKNVALYDINTE--KPLQLFTDMHREPINVAKFSHH---S--------- 589 (606)
Q Consensus 527 ~i~t~~-~~~~V~sV~~sp~g--~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~~I~sV~fsP~---g--------- 589 (606)
....+. |...|++|+|.|.+ -.|+.++.||.|.+.+.+.. -....+..+|.-.|++++|.|. |
T Consensus 94 k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~ 173 (299)
T KOG1332|consen 94 KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAA 173 (299)
T ss_pred hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccc
Confidence 222333 45669999999985 58999999999999998864 2333444489999999999997 3
Q ss_pred -CeEEEEEeCCCeEEE
Q 035500 590 -PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 -~~LLaTgS~DgtIRc 604 (606)
.+-|++|+.|..|++
T Consensus 174 ~~krlvSgGcDn~Vki 189 (299)
T KOG1332|consen 174 KVKRLVSGGCDNLVKI 189 (299)
T ss_pred ccceeeccCCccceee
Confidence 134899999999875
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=140.17 Aligned_cols=144 Identities=17% Similarity=0.326 Sum_probs=121.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+.+|++-++|.|++||..+++.+..++ +|...+.++.|... .+..+.||+.||+|++||++... ..+..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~--------e~a~~ 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK--GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA--------ESARI 110 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec--CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch--------hhhhe
Confidence 579999999999999999999888766 88888999999764 56789999999999999999853 23444
Q ss_pred EeecCC--CeEEEEEccCCCEEEEEe----CCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 530 TYYDFE--QLTSVHVNSTDDQFLASG----YSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 530 t~~~~~--~V~sV~~sp~g~~LaSgs----~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
.+..+. +..+++.+..++.+++|. .+-.|.+||+|..+. +..+...|...|++++|+|..+.+++|||.||.|
T Consensus 111 ~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 111 SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 555444 578888887888998885 367899999998766 8877778999999999999999999999999988
Q ss_pred EE
Q 035500 603 RC 604 (606)
Q Consensus 603 Rc 604 (606)
-.
T Consensus 191 nl 192 (376)
T KOG1188|consen 191 NL 192 (376)
T ss_pred Ee
Confidence 64
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=142.44 Aligned_cols=151 Identities=20% Similarity=0.319 Sum_probs=121.0
Q ss_pred CCCCEEEE---EeCCCcEEEEECC-CCceEEEEe-ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccc
Q 035500 448 SNPSLMAF---GTLDGEVIVINHE-NGNVACYIP-SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADA 522 (606)
Q Consensus 448 ~dg~~LaS---Gs~DGtVrIWDi~-tg~~v~~~~-~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l 522 (606)
.++.++|. ++..|..-|.-+. +|+.-..++ ..||+++|..++|+|.++..+||||+|.+|.||.+....... .
T Consensus 42 vNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-~- 119 (472)
T KOG0303|consen 42 VNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-D- 119 (472)
T ss_pred cCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-C-
Confidence 35566665 4455566565543 354433222 349999999999999999999999999999999998753221 1
Q ss_pred cCCcceEEeecCCC-eEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 523 RGNSSVATYYDFEQ-LTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 523 ~~~~~i~t~~~~~~-V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
-..|+..+.+|.. |.-|+|||.. +.++|+|.|++|.+|++.+|+.+.++. |...|+++.|+.+|. +++|++.|+
T Consensus 120 -ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs-~l~TtckDK 195 (472)
T KOG0303|consen 120 -LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGS-LLCTTCKDK 195 (472)
T ss_pred -cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCc-eeeeecccc
Confidence 1367888887655 9999999996 799999999999999999999988887 999999999999998 589999999
Q ss_pred eEEE
Q 035500 601 MSRC 604 (606)
Q Consensus 601 tIRc 604 (606)
.||+
T Consensus 196 kvRv 199 (472)
T KOG0303|consen 196 KVRV 199 (472)
T ss_pred eeEE
Confidence 9986
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=137.63 Aligned_cols=159 Identities=19% Similarity=0.286 Sum_probs=130.9
Q ss_pred CceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 434 GNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 434 G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
..+|--.+++.|+..+++++.+.|-|-+..|||++++.. +++ ++..|+..|+.++|...+...|+|+|.||+++++|
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT-QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD 225 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT-QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD 225 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee-EEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence 344445889999999999999999999999999998733 333 45699999999999986667899999999999999
Q ss_pred CCCCCCCcccccCCcceEEeec---CCCeEEEEEccCC-CEEEEEeCC-CcEEEEECCCC-ceeEEEcCCCCCCeEEEEE
Q 035500 512 LNHIPPKVADARGNSSVATYYD---FEQLTSVHVNSTD-DQFLASGYS-KNVALYDINTE-KPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~---~~~V~sV~~sp~g-~~LaSgs~D-g~I~IWDlrt~-k~v~~l~~gH~~~I~sV~f 585 (606)
++...- ....++. +.+...++|++++ +++|+-..| ..|.|.|+|.. .++..++ +|++.|+.++|
T Consensus 226 LR~leH---------STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaW 295 (364)
T KOG0290|consen 226 LRSLEH---------STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAW 295 (364)
T ss_pred eccccc---------ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEe
Confidence 998431 1223332 4568999999987 677777655 67999999964 6688888 79999999999
Q ss_pred eCCCCeEEEEEeCCCeEE
Q 035500 586 SHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIR 603 (606)
.|+++..++|||.|..+-
T Consensus 296 aPhS~~hictaGDD~qal 313 (364)
T KOG0290|consen 296 APHSSSHICTAGDDCQAL 313 (364)
T ss_pred cCCCCceeeecCCcceEE
Confidence 999999999999998764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.4e-14 Score=144.30 Aligned_cols=151 Identities=15% Similarity=0.286 Sum_probs=126.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.++.|+|...++|++|+.|+.|.+||..++.++..+.. +.....|+|+| ....|++|++|..+..+|++..
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~---~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l---- 261 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL---TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL---- 261 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEecccCCccceeee---eccccceecCc-cccceeeccccccceehhhhhh----
Confidence 678899999999999999999999999999888775543 33567899999 7788999999999999999985
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..|+..+.+| ++|.+|+|+|.|+-|+|||.|.+|+||..+.+..-.....--...|.+|+|+-++++ +.+||.
T Consensus 262 -----~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky-i~SGSd 335 (433)
T KOG0268|consen 262 -----SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY-IISGSD 335 (433)
T ss_pred -----cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE-EEecCC
Confidence 4567777755 569999999999999999999999999999775533222123467999999999997 779999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.||.
T Consensus 336 d~nvRl 341 (433)
T KOG0268|consen 336 DGNVRL 341 (433)
T ss_pred Ccceee
Confidence 999985
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=147.52 Aligned_cols=169 Identities=10% Similarity=0.091 Sum_probs=131.2
Q ss_pred ceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEE-eccCCCC--CEEEEEEeeCCCCEE
Q 035500 422 HPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYI-PSIGGTN--SVLGLCWLKKYPSKL 498 (606)
Q Consensus 422 ~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~-~~~gH~~--~V~~L~fsp~~~~~L 498 (606)
.++.+..+....|.++ -|++++|+| ++.+||+|..||.|.+|+..+......+ ....|.. .|++|.|++ ++++|
T Consensus 303 ~q~qVik~k~~~g~Rv-~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~L 379 (641)
T KOG0772|consen 303 SQLQVIKTKPAGGKRV-PVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYL 379 (641)
T ss_pred hheeEEeeccCCCccc-CceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchh
Confidence 4444444444445543 388999999 9999999999999999997543322222 1236776 899999998 77999
Q ss_pred EEEECCCeEEEEeCCCCCCCcccccCCcceEEeec---CCCeEEEEEccCCCEEEEEeC------CCcEEEEECCCCcee
Q 035500 499 VAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGY------SKNVALYDINTEKPL 569 (606)
Q Consensus 499 aSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~------Dg~I~IWDlrt~k~v 569 (606)
+|=|.|+++++||++.. ++|+.++.+ ..+-+.++|+|+.+++++|+. .|++.+||..+-..+
T Consensus 380 lSRg~D~tLKvWDLrq~---------kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQF---------KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred hhccCCCceeeeecccc---------ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence 99999999999999986 345555543 344678899999999999964 378999999999999
Q ss_pred EEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 570 QLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 570 ~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.+.. ....|..+.|||-=.. +..|+.||+++|
T Consensus 451 ~ki~i-~~aSvv~~~WhpkLNQ-i~~gsgdG~~~v 483 (641)
T KOG0772|consen 451 YKIDI-STASVVRCLWHPKLNQ-IFAGSGDGTAHV 483 (641)
T ss_pred EEecC-CCceEEEEeecchhhh-eeeecCCCceEE
Confidence 88884 5788999999998776 456777899887
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-13 Score=141.98 Aligned_cols=156 Identities=13% Similarity=0.191 Sum_probs=132.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++-+| +|.+++.|+-.|.+++|.+.+|..+..+ .+|-..|+++.|+- ++.+|+|||.||.|.+|++..--...
T Consensus 84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 84 VHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVL--SAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred eeeeecCC-CceEEEeecccCcEEEEEeccccHHHHH--HhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccc
Confidence 88999999 9999999999999999999999998866 49999999999995 78999999999999999976532211
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCC--CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTD--DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g--~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
... ...|...|.+| -+|+++...+.| ..++|+|.|.++++||+..+..+..+. ....+.+++.+|.+.. +..|
T Consensus 160 ~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~-~yiG 235 (476)
T KOG0646|consen 160 NDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERV-VYIG 235 (476)
T ss_pred cCC-CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccE-EEec
Confidence 211 25678888865 559999988764 599999999999999999999988877 4789999999999985 6788
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
+.+|.|-
T Consensus 236 t~~G~I~ 242 (476)
T KOG0646|consen 236 TEEGKIF 242 (476)
T ss_pred CCcceEE
Confidence 8888774
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-13 Score=154.43 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=120.7
Q ss_pred ccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCC-------Cc---e------EEEEeccCCCCCEEEEEEeeC
Q 035500 430 IYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHEN-------GN---V------ACYIPSIGGTNSVLGLCWLKK 493 (606)
Q Consensus 430 ~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~t-------g~---~------v~~~~~~gH~~~V~~L~fsp~ 493 (606)
..|+|. |.|+.|+| ||.++|+||.|+.|.||.... |. . .....+.+|.+.|..++|+|
T Consensus 66 ~~h~~s----v~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp- 139 (942)
T KOG0973|consen 66 DDHDGS----VNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP- 139 (942)
T ss_pred ccccCc----eeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-
Confidence 345675 88999999 999999999999999999762 11 0 01223569999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 035500 494 YPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLF 572 (606)
Q Consensus 494 ~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l 572 (606)
++.+++|+|.|++|.+|+.++. ..+..+.+| +.|..+.|.|-|++|||-++|++|++|.+..-...+.+
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF----------~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF----------ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred CccEEEEecccceEEEEccccc----------eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEee
Confidence 7799999999999999999983 467777754 66999999999999999999999999997764444433
Q ss_pred cC-----CCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 573 TD-----MHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 573 ~~-----gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.. +-...+..+.|+|+|.++.+..+.
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 31 123567889999999986554443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=142.52 Aligned_cols=146 Identities=17% Similarity=0.223 Sum_probs=123.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++.+| |+.++|+|+.|..|.|||..+.+.+..+. +|.+.|.+++|-. ++..++|+|.|++|++|++...
T Consensus 205 il~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~--ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~---- 276 (479)
T KOG0299|consen 205 ILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFK--GHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQL---- 276 (479)
T ss_pred eEEEEEcC-CCcEEEecCCCceEEEecCcccchhhccc--ccccceeeeeeec-CccceeeeecCCceEEEehhHh----
Confidence 77899999 99999999999999999999999988755 9999999999986 6788999999999999999983
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+.++- |++.|.+|.....+..+-+|+.|+++++|++. .+....+. +|.+.+-|++|-.+.. |+|||.
T Consensus 277 ------s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifr-g~~~sidcv~~In~~H--fvsGSd 346 (479)
T KOG0299|consen 277 ------SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFR-GGEGSIDCVAFINDEH--FVSGSD 346 (479)
T ss_pred ------HHHHHHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeee-CCCCCeeeEEEecccc--eeeccC
Confidence 3455544 56779999887667777777899999999993 33344555 7999999999976654 899999
Q ss_pred CCeEE
Q 035500 599 TTMSR 603 (606)
Q Consensus 599 DgtIR 603 (606)
||.|-
T Consensus 347 nG~Ia 351 (479)
T KOG0299|consen 347 NGSIA 351 (479)
T ss_pred CceEE
Confidence 99874
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.2e-13 Score=146.09 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=126.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++|+.-+| +.-++|.|..||.|+||+..++...-+ +.||+.+|+.+.|+. .+..|+|||.|+.|-+||+-.
T Consensus 68 vt~l~~~~-d~l~lAVGYaDGsVqif~~~s~~~~~t--fngHK~AVt~l~fd~-~G~rlaSGskDt~IIvwDlV~----- 138 (888)
T KOG0306|consen 68 VTCLRSSD-DILLLAVGYADGSVQIFSLESEEILIT--FNGHKAAVTTLKFDK-IGTRLASGSKDTDIIVWDLVG----- 138 (888)
T ss_pred EEEeeccC-CcceEEEEecCceEEeeccCCCceeee--ecccccceEEEEEcc-cCceEeecCCCccEEEEEecc-----
Confidence 77888888 888899999999999999998755544 459999999999997 678999999999999999987
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
......+++ +.+|+...|....++++|.|.|+.|++||+.+..+..+.- .|++.|+.+++.+ .++++++.
T Consensus 139 -----E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thv-d~r~Eiw~l~~~~---~~lvt~~~ 209 (888)
T KOG0306|consen 139 -----EEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHV-DHRGEIWALVLDE---KLLVTAGT 209 (888)
T ss_pred -----ceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEe-cccceEEEEEEec---ceEEEEec
Confidence 345666765 5669999888778999999999999999999999998888 6999999999987 35778887
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+-++.
T Consensus 210 dse~~v 215 (888)
T KOG0306|consen 210 DSELKV 215 (888)
T ss_pred CCceEE
Confidence 876653
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=136.80 Aligned_cols=150 Identities=13% Similarity=0.191 Sum_probs=127.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEE------CCC--------Cc------------------------eEEEEeccCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVIN------HEN--------GN------------------------VACYIPSIGG 481 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWD------i~t--------g~------------------------~v~~~~~~gH 481 (606)
|.+++||| .+.++++|+.|++-+||. +.. ++ .++...+.||
T Consensus 193 VNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH 271 (481)
T KOG0300|consen 193 VNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH 271 (481)
T ss_pred eeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc
Confidence 88999999 889999999999999996 111 00 0123345689
Q ss_pred CCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEE
Q 035500 482 TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVAL 560 (606)
Q Consensus 482 ~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~I 560 (606)
.+.|.+..|.. ++..++++|.|.+-.+||+++ ..++..+.+|.. ++.++-||...+++++|.|.+.++
T Consensus 272 ~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEt----------ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRL 340 (481)
T KOG0300|consen 272 RAVVSACDWLA-GGQQMVTASWDRTANLWDVET----------GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRL 340 (481)
T ss_pred ccceEehhhhc-Ccceeeeeeccccceeeeecc----------CceeccccCcchhccccccCCcceEEEEeccCceeEe
Confidence 99999999986 778999999999999999999 456777887655 899999999999999999999999
Q ss_pred EECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 561 YDINTE-KPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 561 WDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
||.|.. ..+..|+ ||+..|+++.|+-+.. +++||.|.+|+.
T Consensus 341 WDFReaI~sV~VFQ-GHtdtVTS~vF~~dd~--vVSgSDDrTvKv 382 (481)
T KOG0300|consen 341 WDFREAIQSVAVFQ-GHTDTVTSVVFNTDDR--VVSGSDDRTVKV 382 (481)
T ss_pred ccchhhcceeeeec-ccccceeEEEEecCCc--eeecCCCceEEE
Confidence 999955 4478888 8999999999998876 789999999985
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=130.95 Aligned_cols=159 Identities=13% Similarity=0.166 Sum_probs=121.0
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
++++.|.| ...+.|.+|+.||.|.+|+......+.+++ +|.+.|+.++.+| .+.+-+|.+.|+.+++||+-.++..
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK--~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a 162 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK--AHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVA 162 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec--ccccccceeEecC-CCceEEEEcCCceeeeehhhcCccc
Confidence 88999987 223489999999999999999998888776 9999999999999 6788899999999999998765321
Q ss_pred -cccccC------------------CcceEEeec---------CCC--eEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q 035500 519 -VADARG------------------NSSVATYYD---------FEQ--LTSVHVNSTDDQFLASGYSKNVALYDINTEKP 568 (606)
Q Consensus 519 -~~~l~~------------------~~~i~t~~~---------~~~--V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~ 568 (606)
..++.. +..+-.++- ..+ +.++.|- ++..+++|++|+.|++||.....+
T Consensus 163 ~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~ 241 (362)
T KOG0294|consen 163 FVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP 241 (362)
T ss_pred eeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCcc
Confidence 111110 111111111 011 3344343 467899999999999999999999
Q ss_pred eEEEcCCCCCCeEEEEE--eCCCCeEEEEEeCCCeEEE
Q 035500 569 LQLFTDMHREPINVAKF--SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 569 v~~l~~gH~~~I~sV~f--sP~g~~LLaTgS~DgtIRc 604 (606)
...+. +|..+|-.+.+ +|.+ ++++|+|.||.|+.
T Consensus 242 ~~~~~-AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 242 LTEFL-AHENRVKDIASYTNPEH-EYLVTASSDGFIKV 277 (362)
T ss_pred ceeee-cchhheeeeEEEecCCc-eEEEEeccCceEEE
Confidence 99999 89999999994 3555 57999999999985
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=144.58 Aligned_cols=144 Identities=17% Similarity=0.268 Sum_probs=125.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+..|+ ++++++|+.|+++++||..++..+.. .+.||.+.|+++++.. .+.++++||.|.++++||..+
T Consensus 211 ~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~-~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s----- 280 (537)
T KOG0274|consen 211 VLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILT-RLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST----- 280 (537)
T ss_pred hhhheee---cCeEEecCCCceeEEeecccceEEEe-eccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC-----
Confidence 6677786 47999999999999999999888775 2459999999999985 678999999999999999888
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..++.+|.. |.++.. .+..+++||.|.+|++|++.++..+..+. ||.++|+++..+ +. ++++|+.
T Consensus 281 -----g~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~~-~lvsgs~ 349 (537)
T KOG0274|consen 281 -----GECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--EP-LLVSGSY 349 (537)
T ss_pred -----CcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--CC-EEEEEec
Confidence 578999996644 777754 46688889999999999999999999999 799999999998 44 6899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++|+.
T Consensus 350 d~~v~V 355 (537)
T KOG0274|consen 350 DGTVKV 355 (537)
T ss_pred CceEEE
Confidence 998875
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-13 Score=141.36 Aligned_cols=153 Identities=18% Similarity=0.295 Sum_probs=121.7
Q ss_pred eeEEEEcC------CCCCEEEEEeCCCcEEEEECCCCc-eEEEE------------------eccCCCCCEEEEEEeeCC
Q 035500 440 PRQFEYNP------SNPSLMAFGTLDGEVIVINHENGN-VACYI------------------PSIGGTNSVLGLCWLKKY 494 (606)
Q Consensus 440 V~slafsP------~dg~~LaSGs~DGtVrIWDi~tg~-~v~~~------------------~~~gH~~~V~~L~fsp~~ 494 (606)
+.|++|.- .-|+++|.|+.|..|.|||+.-.. ..+.+ ...+|+.+|..+.|+...
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 44555533 257899999999999999964311 11111 123799999999999877
Q ss_pred CCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCC-CEEEEEeCCCcEEEEECCC-CceeEE
Q 035500 495 PSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTD-DQFLASGYSKNVALYDINT-EKPLQL 571 (606)
Q Consensus 495 ~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt-~k~v~~ 571 (606)
.+.|+|||.|.+|++||+.++ .|..++.+ ..+|.+++|||.. ..+++||.|++|.+.|.|. +..-..
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g----------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTG----------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred ceeEEecCCCceEEEEEcCCC----------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce
Confidence 789999999999999999994 56777775 4669999999985 6999999999999999994 233333
Q ss_pred EcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 572 FTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 572 l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++ -.+.|-.++|+|..+..+.++..||+++-
T Consensus 326 wk--~~g~VEkv~w~~~se~~f~~~tddG~v~~ 356 (463)
T KOG0270|consen 326 WK--FDGEVEKVAWDPHSENSFFVSTDDGTVYY 356 (463)
T ss_pred EE--eccceEEEEecCCCceeEEEecCCceEEe
Confidence 33 46889999999999999999999999984
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-13 Score=132.66 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=126.1
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
.++-+|+| .+++.+++. .|++++.||.++......+. ..|...|..+.|+|.....|+||++||-|++||.+..
T Consensus 173 ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--- 247 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--- 247 (370)
T ss_pred ecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC---
Confidence 44557999 677777665 58999999999887776665 3788889999999987788999999999999999986
Q ss_pred cccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCC------------------------ce----
Q 035500 519 VADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTE------------------------KP---- 568 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~------------------------k~---- 568 (606)
+.|+..+.+| ..|++|.|+|.- +++.|||.|..|.+|....- ++
T Consensus 248 ------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg 321 (370)
T KOG1007|consen 248 ------KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG 321 (370)
T ss_pred ------CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc
Confidence 5688888865 459999999984 79999999999999966531 11
Q ss_pred -eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 569 -LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 569 -v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.++. .|...|++++|+...+|+||+-|+||.+.+
T Consensus 322 ~l~tyd-ehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 322 QLETYD-EHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cccccc-ccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 23444 599999999999999999999999998764
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=131.95 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=126.7
Q ss_pred ccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCC--CEEEEEECCC
Q 035500 428 SHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYP--SKLVAGSDSG 505 (606)
Q Consensus 428 ~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~--~~LaSgS~Dg 505 (606)
+..|.+|.. .-|.++.|-|.|...+.+++.|++++|||..+-+....|++ .+.|+.-+|+|-.. -++|+|.+|-
T Consensus 93 ~~~h~~~Hk-y~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m---e~~VYshamSp~a~sHcLiA~gtr~~ 168 (397)
T KOG4283|consen 93 AKQHENGHK-YAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM---EGKVYSHAMSPMAMSHCLIAAGTRDV 168 (397)
T ss_pred cccCCccce-eeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec---CceeehhhcChhhhcceEEEEecCCC
Confidence 344434432 33888999999999999999999999999999887777754 34688888988533 4688889999
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCC-EEEEEeCCCcEEEEECCCC-ceeEEE----------
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDD-QFLASGYSKNVALYDINTE-KPLQLF---------- 572 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~-k~v~~l---------- 572 (606)
.|++-|+.++ ....++.+| +.|.+|.|+|..+ .+++||.||.|++||+|.. -+...+
T Consensus 169 ~VrLCDi~SG----------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~ 238 (397)
T KOG4283|consen 169 QVRLCDIASG----------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI 238 (397)
T ss_pred cEEEEeccCC----------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc
Confidence 9999999994 566778865 5599999999987 6889999999999999965 111111
Q ss_pred ---cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 573 ---TDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 573 ---~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+|.+.|+.++|..++.+ +++++.|..+|.
T Consensus 239 ~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 239 LKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIRV 272 (397)
T ss_pred ccccccccceeeeeeecccchh-hhhccCccceEE
Confidence 2258899999999999997 667777776663
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-12 Score=134.77 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=126.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-------CceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEe
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-------GNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-------g~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWD 511 (606)
++|+.|+- |+.+++|||.||.|.+|.+.. +.......+..|+-+|+++...+. -..+++|+|.|.++|+||
T Consensus 126 ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 126 ITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD 204 (476)
T ss_pred eeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence 78899998 999999999999999998532 233333446699999999998763 235799999999999999
Q ss_pred CCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc----------------eeEEEcCC
Q 035500 512 LNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK----------------PLQLFTDM 575 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k----------------~v~~l~~g 575 (606)
+..+ ..+.++....++.+++..|.+..++.|+.+|.|.+.++.+-. .+..+. |
T Consensus 205 lS~g----------~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-G 273 (476)
T KOG0646|consen 205 LSLG----------VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-G 273 (476)
T ss_pred eccc----------eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec-c
Confidence 9984 467777788889999999999999999999999998876432 245566 7
Q ss_pred CCC--CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 576 HRE--PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 576 H~~--~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++ .|+|++.+-+|. +|++|+.||.|+.
T Consensus 274 h~~~~~ITcLais~Dgt-lLlSGd~dg~Vcv 303 (476)
T KOG0646|consen 274 HENESAITCLAISTDGT-LLLSGDEDGKVCV 303 (476)
T ss_pred ccCCcceeEEEEecCcc-EEEeeCCCCCEEE
Confidence 988 999999999998 7999999999874
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-13 Score=146.47 Aligned_cols=151 Identities=9% Similarity=0.083 Sum_probs=118.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-----EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-----ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-----v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
|+.++|+|.|...+|.|+.||.|++|-+..+.. ...-.+.+|...|+.+.|+|...+.|++++.|.+|++||+..
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 789999999999999999999999999865322 112224589999999999998888999999999999999998
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK-PLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
+.. ......|.++|.+++|+|+|..+|+.+.||+|++|..++++ ++++-+.....+--.|.|.-+|.+++
T Consensus 710 ~~~---------~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 710 AKL---------YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVI 780 (1012)
T ss_pred hhh---------hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEE
Confidence 532 22233356789999999999999999999999999999764 45544422334445678888898655
Q ss_pred EEEeCCC
Q 035500 594 LLLHLTT 600 (606)
Q Consensus 594 aTgS~Dg 600 (606)
++ +.|.
T Consensus 781 v~-Gfdk 786 (1012)
T KOG1445|consen 781 VV-GFDK 786 (1012)
T ss_pred Ee-cccc
Confidence 44 4453
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=141.55 Aligned_cols=142 Identities=18% Similarity=0.249 Sum_probs=119.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..++.-| +. .++|||.|.+||+|.- ++.+.++. ||.+-|.++++.+. ..|+|||.||.|++|++..
T Consensus 143 VWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~--gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~~g----- 209 (745)
T KOG0301|consen 143 VWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFS--GHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDLDG----- 209 (745)
T ss_pred eeeeeecC-CC-cEEeccCcceeeeccC--Cchhhhhc--cchhheeeeEEecC--CCeEeecCCceEEEEeccC-----
Confidence 77888888 44 8899999999999975 66777666 99999999999974 4699999999999999954
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..+.+|.. |.+++..+.+..++|+|+|++++||+.. ++++.+.. -...|+++++-++|. +++|+.
T Consensus 210 ------e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l-PttsiWsa~~L~NgD--Ivvg~S 278 (745)
T KOG0301|consen 210 ------EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL-PTTSIWSAKVLLNGD--IVVGGS 278 (745)
T ss_pred ------ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec-CccceEEEEEeeCCC--EEEecc
Confidence 46777776655 9999978888999999999999999976 66666662 245899999999988 789999
Q ss_pred CCeEEEc
Q 035500 599 TTMSRCG 605 (606)
Q Consensus 599 DgtIRc~ 605 (606)
||.||+.
T Consensus 279 DG~VrVf 285 (745)
T KOG0301|consen 279 DGRVRVF 285 (745)
T ss_pred CceEEEE
Confidence 9999974
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.7e-12 Score=127.34 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=90.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEE-eeCCCCEEEEEECCCeEEEEeCCCC-
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCW-LKKYPSKLVAGSDSGCVRLFDLNHI- 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~f-sp~~~~~LaSgS~DgtIklWDl~~~- 515 (606)
+.++.|++ .|+.+|+++.|++|+|||.++ +.-..+-....|.+.|..+.| +|.-|..+|+||.|+++.||.=...
T Consensus 16 ihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 16 IHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 67788999 999999999999999999643 444344455699999999999 5667889999999999999985321
Q ss_pred -CCCcccccCCcceEEee-cCCCeEEEEEccC--CCEEEEEeCCCcEEEEECC
Q 035500 516 -PPKVADARGNSSVATYY-DFEQLTSVHVNST--DDQFLASGYSKNVALYDIN 564 (606)
Q Consensus 516 -~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlr 564 (606)
+.....+ ....++. ..++|++|+|.|. |=.+|+++.||++|||+.-
T Consensus 95 ~~~~~~~W---v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~ 144 (361)
T KOG2445|consen 95 EEAHGRRW---VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAP 144 (361)
T ss_pred ccccccee---EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecC
Confidence 1111111 1223344 3566899999887 4588888899999998654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=143.16 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=116.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|++..- ++. +++||.|.+++||-... +... +.||..+|++++..|.+ .++|||.|++||+|.-.+
T Consensus 104 VC~ls~~~-~~~-~iSgSWD~TakvW~~~~--l~~~--l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~----- 170 (745)
T KOG0301|consen 104 VCSLSIGE-DGT-LISGSWDSTAKVWRIGE--LVYS--LQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGT----- 170 (745)
T ss_pred eeeeecCC-cCc-eEecccccceEEecchh--hhcc--cCCcchheeeeeecCCC--cEEeccCcceeeeccCCc-----
Confidence 55666654 554 99999999999998653 3333 45999999999999853 899999999999997644
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.+++|.+|.. |.++++-+ +..|+|++.||.|++||+ +|+.+.++. ||++.|++++..+.+. +++++|+
T Consensus 171 -------~l~tf~gHtD~VRgL~vl~-~~~flScsNDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~-~Ivs~gE 239 (745)
T KOG0301|consen 171 -------LLKTFSGHTDCVRGLAVLD-DSHFLSCSNDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDG-LIVSTGE 239 (745)
T ss_pred -------hhhhhccchhheeeeEEec-CCCeEeecCCceEEEEec-cCceeeeee-ccceEEEEEEecCCCC-eEEEecC
Confidence 5778887655 99998875 457889999999999999 789999998 8999999999666665 6899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+++|+
T Consensus 240 Drtlri 245 (745)
T KOG0301|consen 240 DRTLRI 245 (745)
T ss_pred CceEEE
Confidence 999996
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=126.11 Aligned_cols=149 Identities=17% Similarity=0.277 Sum_probs=123.2
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC--CCeEEEEeCCCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD--SGCVRLFDLNHI 515 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~--DgtIklWDl~~~ 515 (606)
.++.++.|++ +|.++++++.|-++++||..+++.+.++. .++-.|..++|-.. +..++.+|. |.+|+.-++..
T Consensus 15 ~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~--skkyG~~~~~Fth~-~~~~i~sStk~d~tIryLsl~d- 89 (311)
T KOG1446|consen 15 GKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTIN--SKKYGVDLACFTHH-SNTVIHSSTKEDDTIRYLSLHD- 89 (311)
T ss_pred CceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEee--cccccccEEEEecC-CceEEEccCCCCCceEEEEeec-
Confidence 4589999999 99999999999999999999999998776 45556888888653 355555555 89999999998
Q ss_pred CCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 516 PPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
.+.++.|.+| ..|++++.+|.++.|+|+|.|++|++||+|..++...+.. ..-..++|.|.|- ++|
T Consensus 90 ---------NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp~GL-ifA 156 (311)
T KOG1446|consen 90 ---------NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFDPEGL-IFA 156 (311)
T ss_pred ---------CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeECCCCc-EEE
Confidence 5689999976 4599999999999999999999999999998888766653 3334589999997 678
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
++.....|+.
T Consensus 157 ~~~~~~~IkL 166 (311)
T KOG1446|consen 157 LANGSELIKL 166 (311)
T ss_pred EecCCCeEEE
Confidence 7777767664
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=132.63 Aligned_cols=165 Identities=12% Similarity=0.131 Sum_probs=134.3
Q ss_pred cccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEE
Q 035500 429 HIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVR 508 (606)
Q Consensus 429 ~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIk 508 (606)
.+|.+| +..++... ...++.+++.|.+-+||.+++|+++..+. ||.+.|.++.|++ .+.+++++|.|++-.
T Consensus 145 ~GHkDG-----iW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~--GH~GSVNsikfh~-s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 145 EGHKDG-----IWHVAADS-TQPICGTASADHTARIWSLESGACLATYT--GHTGSVNSIKFHN-SGLLLLTASGDETAH 215 (481)
T ss_pred cccccc-----eeeehhhc-CCcceeecccccceeEEeeccccceeeec--ccccceeeEEecc-ccceEEEccCCcchH
Confidence 355678 45556655 44599999999999999999999998766 9999999999998 678999999999999
Q ss_pred EEe------CCCCCCC--c----------------------ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCc
Q 035500 509 LFD------LNHIPPK--V----------------------ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKN 557 (606)
Q Consensus 509 lWD------l~~~~~~--~----------------------~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~ 557 (606)
||. +..+... . .......|+..+.+| ..|.+..|-..|+.++++|.|.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 998 2221100 0 001113466677765 45888899989999999999999
Q ss_pred EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 558 VALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 558 I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+||+++++++..+. ||....+.++-+|... +++|+|.|.+.|.
T Consensus 296 AnlwDVEtge~v~~Lt-GHd~ELtHcstHptQr-LVvTsSrDtTFRL 340 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILT-GHDSELTHCSTHPTQR-LVVTSSRDTTFRL 340 (481)
T ss_pred ceeeeeccCceecccc-CcchhccccccCCcce-EEEEeccCceeEe
Confidence 9999999999999999 8999999999999877 7999999998874
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-12 Score=132.45 Aligned_cols=140 Identities=15% Similarity=0.096 Sum_probs=116.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+..+++|..|++||+||+.+..+...++.. +.|+++..++ ++..+.|++.|.++++.|+++. .-..
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g---g~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~----------eI~~ 377 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLG---GRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTK----------EIRQ 377 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecC---cceeeEeecc-CCeEEeeecCCCceeeeecccc----------cEEE
Confidence 467889999999999999999888877642 3899999997 6678889999999999999983 2233
Q ss_pred Eee-----cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC-CeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 530 TYY-----DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHRE-PINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 530 t~~-----~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~-~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
++. ....++.+.|+|++.++++||.||.|+||+..+++....+...+.. .|+++.|+|.|.+ +++++.++.++
T Consensus 378 ~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~-Llsadk~~~v~ 456 (459)
T KOG0288|consen 378 TFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG-LLSADKQKAVT 456 (459)
T ss_pred EeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch-hhcccCCcceE
Confidence 333 2233899999999999999999999999999999999888865655 7999999999997 66777787765
Q ss_pred E
Q 035500 604 C 604 (606)
Q Consensus 604 c 604 (606)
.
T Consensus 457 l 457 (459)
T KOG0288|consen 457 L 457 (459)
T ss_pred e
Confidence 3
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-13 Score=148.61 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=124.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
.+..+++|+.|..+-+|.+..-..+.. +.+|.++|-++.|++ ...++++|+.||+||+||+..+ .-+
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S--~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeA----------k~v 105 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITS--LTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEA----------KIV 105 (825)
T ss_pred cceeeccCCCceeeccccccCCchhhe--eeccCCcceeeecCc-chhhhcccccCCceeeeehhhh----------hhh
Confidence 667899999999999999876555443 459999999999998 6789999999999999999984 345
Q ss_pred EEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 529 ATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 529 ~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
+++.+ ...+.+|.|||-+.++|+|+.|+.+++||++..-+.+.+. +|...|..+.|+|+|.| ++.|++|.+++++
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP~Gr~-v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSPDGRW-VASGGEDNTVKIW 181 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-CCcceeEEEeecCCCce-eeccCCcceeeee
Confidence 56665 4669999999999999999999999999999988999999 69999999999999996 8899999999874
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.4e-13 Score=152.81 Aligned_cols=155 Identities=14% Similarity=0.213 Sum_probs=135.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC---eEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG---CVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg---tIklWDl~~~~ 516 (606)
|.+++|+.+...+||+|+.+|++.|||++..+.+..+...+.+..+..++|+|++...+++++.|. .|.+||+|..
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a- 242 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA- 242 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-
Confidence 889999998999999999999999999998877665554444556889999998888888888665 8999999985
Q ss_pred CCcccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 517 PKVADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
..|++++.+| ..|.++.|.+.+ .+++|++.|+.|.+|+.++++.+..+. ...+.+..+.|.|..+.+++
T Consensus 243 --------ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-~~~nW~fdv~w~pr~P~~~A 313 (1049)
T KOG0307|consen 243 --------SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP-AQGNWCFDVQWCPRNPSVMA 313 (1049)
T ss_pred --------CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC-CCCcceeeeeecCCCcchhh
Confidence 4678888765 459999999988 799999999999999999999999999 57789999999999999999
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
.++.||.|-+
T Consensus 314 ~asfdgkI~I 323 (1049)
T KOG0307|consen 314 AASFDGKISI 323 (1049)
T ss_pred hheeccceee
Confidence 9999998754
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=136.51 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=123.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|.+ ++.++++++.|+.+++|++...+...++. ||++.|+++.|.. ....+++|+.|.+||+||+..
T Consensus 222 it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLs--GHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k----- 292 (459)
T KOG0288|consen 222 ITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLS--GHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQK----- 292 (459)
T ss_pred cceeeecC-CCceEEeecCCCceeeeeccchhhhhhhc--ccccceeeehhhc-cccceeeccccchhhhhhhhh-----
Confidence 78899999 88899999999999999999988887665 9999999999986 444599999999999999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
..+.++.-..+.+.+|..+ ...++||..|++|++||+|++.++...+ ++ +.|+++..++++..++++ +.|
T Consensus 293 -----~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~g-g~vtSl~ls~~g~~lLss-sRD 362 (459)
T KOG0288|consen 293 -----AYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP-LG-GRVTSLDLSMDGLELLSS-SRD 362 (459)
T ss_pred -----hheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEee-cC-cceeeEeeccCCeEEeee-cCC
Confidence 3456666666667778766 6789999999999999999999999999 45 599999999999986554 777
Q ss_pred CeEE
Q 035500 600 TMSR 603 (606)
Q Consensus 600 gtIR 603 (606)
-++.
T Consensus 363 dtl~ 366 (459)
T KOG0288|consen 363 DTLK 366 (459)
T ss_pred Ccee
Confidence 6654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-12 Score=133.31 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=124.8
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC--
Q 035500 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK-- 518 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~-- 518 (606)
.+++|++ ++..+++|+.||++|||++.+...+... ..|.+.|.++.|+| ++..|+|-+.| ..+||+.+++...
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e--~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEE--IAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhh--HhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhh
Confidence 4678999 9999999999999999998876665544 38999999999999 67899999999 8999999886110
Q ss_pred cc--------------------cc------cCCcceE-----Eeec------------CCCeEEEEEccCCCEEEEEeCC
Q 035500 519 VA--------------------DA------RGNSSVA-----TYYD------------FEQLTSVHVNSTDDQFLASGYS 555 (606)
Q Consensus 519 ~~--------------------~l------~~~~~i~-----t~~~------------~~~V~sV~~sp~g~~LaSgs~D 555 (606)
.+ .+ .....+. .+.. +..|.+++++++|+++|.|+.|
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 00 00 0000111 1111 4579999999999999999999
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 556 KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 556 g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
|.|.|++..+.+.++..+.+|...|+.+.|+|+.++ +++-|.|..++
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~ 349 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAA 349 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc-ccccccCCcee
Confidence 999999999999999999899999999999999987 55666666554
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-12 Score=135.00 Aligned_cols=157 Identities=11% Similarity=0.118 Sum_probs=123.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce------EE-EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV------AC-YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~------v~-~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
|.++.|++.+.+.+|||+.|..|++|-++.+.. +. .-.+..|..+|+++.|+| .+.+++||+++|.|.+|-.
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~ 94 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQ 94 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEEe
Confidence 778899996777999999999999998765322 22 223458999999999999 6789999999999999987
Q ss_pred CCCCC----CcccccCCc---ceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 513 NHIPP----KVADARGNS---SVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 513 ~~~~~----~~~~l~~~~---~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
..... ...... ++ -.+...+ ...|..++|+|++..+++++.|+.+++||++.|+....+. .|...|.-++
T Consensus 95 ~~~~~~~~d~e~~~~-ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgva 172 (434)
T KOG1009|consen 95 GDVRIFDADTEADLN-KEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGVA 172 (434)
T ss_pred cCcCCccccchhhhC-ccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-ccccccceee
Confidence 63111 000000 11 1223333 4559999999999999999999999999999999999998 7999999999
Q ss_pred EeCCCCeEEEEEeCCC
Q 035500 585 FSHHSPLCLLLLHLTT 600 (606)
Q Consensus 585 fsP~g~~LLaTgS~Dg 600 (606)
|.|.+++ +++=|.|+
T Consensus 173 wDpl~qy-v~s~s~dr 187 (434)
T KOG1009|consen 173 WDPLNQY-VASKSSDR 187 (434)
T ss_pred cchhhhh-hhhhccCc
Confidence 9999987 66767676
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=127.63 Aligned_cols=147 Identities=13% Similarity=0.152 Sum_probs=125.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+. |.++|++|+.+..+||||.+..+. ...+..+|.+.|..+-|.. .+..++|.++|++||+||.+++
T Consensus 103 vk~~af~~-ds~~lltgg~ekllrvfdln~p~A-pp~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTg---- 175 (334)
T KOG0278|consen 103 VKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKA-PPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTG---- 175 (334)
T ss_pred eeeEEecc-cchhhhccchHHHhhhhhccCCCC-CchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccC----
Confidence 88999998 999999999999999999986443 3345669999999999996 5678889999999999999994
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
..+.++..+.+|+++.++++|.++.++ +.+.|++||..+-.+++.+. -.-.|.+..++|... ++++|+.|
T Consensus 176 ------t~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~-~fVaGged 245 (334)
T KOG0278|consen 176 ------TEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKE-FFVAGGED 245 (334)
T ss_pred ------cEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc--CccccccccccCCCc-eEEecCcc
Confidence 457888889999999999998877555 44789999999988888877 357899999999985 79999999
Q ss_pred CeEE
Q 035500 600 TMSR 603 (606)
Q Consensus 600 gtIR 603 (606)
..+.
T Consensus 246 ~~~~ 249 (334)
T KOG0278|consen 246 FKVY 249 (334)
T ss_pred eEEE
Confidence 8764
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-12 Score=137.60 Aligned_cols=161 Identities=12% Similarity=0.167 Sum_probs=118.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC-
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK- 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~- 518 (606)
|-.+.|-| ....|++++.|.++++||+++++++..-.+.||.+.|.++||+|.++..|++|+.||.|.|||++-....
T Consensus 103 ifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 103 IFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred eEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 66788999 7789999999999999999999888764556999999999999999999999999999999999865310
Q ss_pred -----------ccc-ccCCcc----eEEeec-CCCeEE---EEEccCCCEEEEEeC-CCcEEEEECCCCceeE-------
Q 035500 519 -----------VAD-ARGNSS----VATYYD-FEQLTS---VHVNSTDDQFLASGY-SKNVALYDINTEKPLQ------- 570 (606)
Q Consensus 519 -----------~~~-l~~~~~----i~t~~~-~~~V~s---V~~sp~g~~LaSgs~-Dg~I~IWDlrt~k~v~------- 570 (606)
.+. .....+ +..... ...|.+ +-+..|..++|++|. |+.|++||+|+.....
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~ 261 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS 261 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence 000 000111 111221 122444 445568889999987 9999999999764322
Q ss_pred -EEcCCC---CCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 571 -LFTDMH---REPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 571 -~l~~gH---~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
.+. -| .-.+.++.....|.+++|+|. |+.|-
T Consensus 262 ~~~~-t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy 296 (720)
T KOG0321|consen 262 DKYP-THSKRSVGQVNLILDSSGTYLFASCT-DNSIY 296 (720)
T ss_pred cCcc-CcccceeeeEEEEecCCCCeEEEEec-CCcEE
Confidence 222 13 345777888888999999998 66554
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-11 Score=138.13 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=127.0
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
.++.++|+- +|+++|.||.|-.|++-+.........+. +|+++|.++.|+| .+..||+.+-||.|++||+..+...
T Consensus 98 p~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lr--gh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 98 PIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLR--GHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred cceEEEEec-CCcEEEeecCceeEEEEeccccchheeec--ccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhh
Confidence 377889998 99999999999999999998877766544 9999999999999 6789999999999999999974321
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-CCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM-HREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g-H~~~I~sV~fsP~g~~LLaTgS 597 (606)
..+.+-.+...+.....+..++|||+|..++..+.|+.|++|+....+....+..- |...+..+.|+|.|.| +|+++
T Consensus 174 -~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~ 251 (933)
T KOG1274|consen 174 -KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY-IAAST 251 (933)
T ss_pred -hhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE-Eeeec
Confidence 11111111112222344788999999999999999999999999998887776633 3445999999999997 78888
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.||.|-.
T Consensus 252 ~~g~I~v 258 (933)
T KOG1274|consen 252 LDGQILV 258 (933)
T ss_pred cCCcEEE
Confidence 8887753
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7e-12 Score=127.62 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=119.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC---CC---ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE---NG---NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~---tg---~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
-...+.|| +|+++|+++..-.|+||.+- .| +..+.+++.||.+.|..++|++ ++..++|.|.||++++||.+
T Consensus 231 n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 231 NYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeecc
Confidence 44568999 99999999999999999953 22 3345677889999999999998 67899999999999999976
Q ss_pred CC---CCCcccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 514 HI---PPKVADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 514 ~~---~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
-. ......+... + ..+. +..++ .++.+|.|+.||.+.. ..+++|..++++...+++..|...|.+++|+|+
T Consensus 309 VrY~~~qDpk~Lk~g-~-~pl~aag~~p~-RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEG-S-APLHAAGSEPV-RLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred ceEecCCCchHhhcC-C-cchhhcCCCce-EEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence 41 1111111100 0 0111 12334 7889999998887765 579999999999999999899999999999999
Q ss_pred CCeEEEEEeCCCeEEE
Q 035500 589 SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 589 g~~LLaTgS~DgtIRc 604 (606)
|++ ++|++ |+.+|.
T Consensus 385 g~~-~atcG-dr~vrv 398 (420)
T KOG2096|consen 385 GKY-IATCG-DRYVRV 398 (420)
T ss_pred CcE-Eeeec-ceeeee
Confidence 996 55655 666664
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-11 Score=118.86 Aligned_cols=143 Identities=11% Similarity=0.187 Sum_probs=120.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCC-----CCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccccc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGT-----NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~-----~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~ 523 (606)
++..+|+|+.|.+||+||++-..++.++....|. +.|.+++..| .+++|+||-.|.+.-+||++.
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc~lydirg--------- 262 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRG--------- 262 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCceEEEEeeC---------
Confidence 7789999999999999999988888776544443 5689999999 679999999999999999998
Q ss_pred CCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 524 GNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTE----KPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 524 ~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~----k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+++.|..| ..|.+|.|+|...++.++++|..|++-|+... -++.+.. .|+..+..+.|+|+.- -|.+.|.
T Consensus 263 -~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~-ehkdk~i~~rwh~~d~-sfisssa 339 (350)
T KOG0641|consen 263 -GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA-EHKDKAIQCRWHPQDF-SFISSSA 339 (350)
T ss_pred -CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE-eccCceEEEEecCccc-eeeeccC
Confidence 4578877755 44999999999999999999999999999842 2344444 5999999999999876 4788999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+++..
T Consensus 340 dkt~tl 345 (350)
T KOG0641|consen 340 DKTATL 345 (350)
T ss_pred cceEEE
Confidence 998763
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.9e-11 Score=120.97 Aligned_cols=150 Identities=14% Similarity=0.089 Sum_probs=120.6
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+|.+++.+| -++.+++|+.|++||+||++..++...+...+ -...+|+| .+-.+|++...+.|++||++...
T Consensus 102 ~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~----~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~d-- 173 (311)
T KOG1446|consen 102 RVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG----RPIAAFDP-EGLIFALANGSELIKLYDLRSFD-- 173 (311)
T ss_pred eEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCC----CcceeECC-CCcEEEEecCCCeEEEEEecccC--
Confidence 488999999 55899999999999999999888777665322 34567898 45667777777799999999864
Q ss_pred cccccCCcceEEeec----CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCe---EEEEEeCCCCe
Q 035500 519 VADARGNSSVATYYD----FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPI---NVAKFSHHSPL 591 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~----~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I---~sV~fsP~g~~ 591 (606)
+.|..++.- ....+.|.|+|+|+.+..+...+.+.+.|.-+|.....+. +|...- -...|.|++++
T Consensus 174 ------kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 174 ------KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-GYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred ------CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-eccCCCCcceeEEECCCCcE
Confidence 345555552 4558999999999999999999999999999999988888 565443 57889999996
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
+.+|+.||+|..
T Consensus 247 -vl~gs~dg~i~v 258 (311)
T KOG1446|consen 247 -VLSGSDDGTIHV 258 (311)
T ss_pred -EEEecCCCcEEE
Confidence 679999998864
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=125.43 Aligned_cols=157 Identities=10% Similarity=0.061 Sum_probs=129.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
++|.+|++ +...+|.+.....|.||...... ......+..|...|++++|.| ..+.|++|+.|..-.+|....+..
T Consensus 13 itchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~~- 89 (361)
T KOG1523|consen 13 ITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGGT- 89 (361)
T ss_pred eeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCCe-
Confidence 78899999 99999999999999999987665 344344558999999999999 567899999999999999854322
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee---EEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPL---QLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v---~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
+ ++.+..+++..++++|.|+|.++.||+||..+.|.+|-.+..+.- +.++..+.+.|+++.|+|.+- ++++
T Consensus 90 ---W--kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-Llaa 163 (361)
T KOG1523|consen 90 ---W--KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAA 163 (361)
T ss_pred ---e--ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecc
Confidence 1 233445667888999999999999999999999999999876552 223346789999999999987 7999
Q ss_pred EeCCCeEEEc
Q 035500 596 LHLTTMSRCG 605 (606)
Q Consensus 596 gS~DgtIRc~ 605 (606)
||.|+..|.+
T Consensus 164 Gs~D~k~rVf 173 (361)
T KOG1523|consen 164 GSTDGKCRVF 173 (361)
T ss_pred cccCcceeEE
Confidence 9999998864
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.6e-12 Score=137.70 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=119.7
Q ss_pred CCCEEEE--EeCCCcEEEEECCC-CceE-EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccC
Q 035500 449 NPSLMAF--GTLDGEVIVINHEN-GNVA-CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARG 524 (606)
Q Consensus 449 dg~~LaS--Gs~DGtVrIWDi~t-g~~v-~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~ 524 (606)
+...+|. ++..|.|-||++.. |+.- ..+...-....|+.+.|+|-+...|+.+++||.|++|.+..+.......
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~-- 667 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM-- 667 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC--
Confidence 3345554 56689999999875 3321 1222223456799999999999999999999999999998764432222
Q ss_pred CcceEEeec-CCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 525 NSSVATYYD-FEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 525 ~~~i~t~~~-~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
.|...+.. ...|+++.|||-. +.++++++|-+|++||+++++....+. +|++.|..++|+|+|+ .+||.+.||++
T Consensus 668 -tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpdGr-~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 668 -TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPDGR-RIATVCKDGTL 744 (1012)
T ss_pred -CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCCCc-ceeeeecCceE
Confidence 24455554 4569999999985 799999999999999999999988898 8999999999999999 58999999999
Q ss_pred EE
Q 035500 603 RC 604 (606)
Q Consensus 603 Rc 604 (606)
|.
T Consensus 745 rV 746 (1012)
T KOG1445|consen 745 RV 746 (1012)
T ss_pred EE
Confidence 85
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-12 Score=136.13 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=122.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
...++.+| |.+...++..||.|.|||+.+...++.++ ||++.+.||..++ ++..|.||+-|.+|+-||++.+
T Consensus 512 CyALa~sp-DakvcFsccsdGnI~vwDLhnq~~Vrqfq--GhtDGascIdis~-dGtklWTGGlDntvRcWDlreg---- 583 (705)
T KOG0639|consen 512 CYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--GHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREG---- 583 (705)
T ss_pred hhhhhcCC-ccceeeeeccCCcEEEEEcccceeeeccc--CCCCCceeEEecC-CCceeecCCCccceeehhhhhh----
Confidence 35689999 99999999999999999999988888766 9999999999997 6789999999999999999984
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
..+......++|.++...|++.+++.|-.++.+-+-.....+. ..+. .|.+.|.+++|.+.|+| +++.+.|
T Consensus 584 ------rqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlh-lheScVLSlKFa~cGkw-fvStGkD 654 (705)
T KOG0639|consen 584 ------RQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLH-LHESCVLSLKFAYCGKW-FVSTGKD 654 (705)
T ss_pred ------hhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc-eeec-ccccEEEEEEecccCce-eeecCch
Confidence 3344555678899999999999999999999888876654433 3444 59999999999999998 6666666
Q ss_pred C
Q 035500 600 T 600 (606)
Q Consensus 600 g 600 (606)
.
T Consensus 655 n 655 (705)
T KOG0639|consen 655 N 655 (705)
T ss_pred h
Confidence 4
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=132.01 Aligned_cols=138 Identities=16% Similarity=0.267 Sum_probs=120.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+-+.|||....+|.+++++|.|.+||+........+ ...|..+..+|+|+|.++.+|+|.|.|..|.+||.+.
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s----- 240 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS----- 240 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcccch-hhhccCCcCcceecCCccceEEEecccceEEEeeccc-----
Confidence 6778899988889999999999999999876665543 2489999999999999999999999999999999997
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
+.....+....+...|+|.++|.++++|+..|.|..||+|.. .++.++. +|...|++++|-|..
T Consensus 241 -----~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s-ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 241 -----QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS-AHDASVTRVAFQPSP 305 (673)
T ss_pred -----ccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee-ecccceeEEEeeecc
Confidence 445566667788999999999999999999999999999964 5677777 899999999998764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=132.03 Aligned_cols=152 Identities=14% Similarity=0.206 Sum_probs=120.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC---CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN---GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t---g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|..+++|. ..+++.||+. |-|+|||+.. ...+..+........+.+....| +++.|++|++-.++.|||+....
T Consensus 422 VcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiWDLAapT 498 (705)
T KOG0639|consen 422 VCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPT 498 (705)
T ss_pred EEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeeeeeccCCC
Confidence 55677887 6778999885 5599999864 22333333334456788888888 67899999999999999998843
Q ss_pred CCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 517 PKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
...+ ..+... ....+++.+|+.+..+++..||.|.|||+++...++.|+ ||++.+.||..+++|.. +=|
T Consensus 499 prik--------aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dGtk-lWT 568 (705)
T KOG0639|consen 499 PRIK--------AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDGTK-LWT 568 (705)
T ss_pred cchh--------hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCCce-eec
Confidence 2111 011111 236788999999999999999999999999999999999 89999999999999986 669
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
|+-|.+|||
T Consensus 569 GGlDntvRc 577 (705)
T KOG0639|consen 569 GGLDNTVRC 577 (705)
T ss_pred CCCccceee
Confidence 999999998
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=118.69 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=111.9
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+++++|+| ++..+ ++++.++.|++||..+++....+. .+. .+..++|+|++...+++++.|+.+++||+.+
T Consensus 33 ~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~---- 104 (300)
T TIGR03866 33 PRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLP--SGP-DPELFALHPNGKILYIANEDDNLVTVIDIET---- 104 (300)
T ss_pred CCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEecc--CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCC----
Confidence 56789999 77766 677889999999999888776554 332 3567899985433445566799999999987
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC-cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK-NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg-~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...+..+.....+.+++|+|++.++++++.++ .+.+||.++++...... .......++|+|++.++++++.
T Consensus 105 ------~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 105 ------RKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred ------CeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcC
Confidence 33455565555578899999999999888765 57788999887766554 2345678999999998777777
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|+.|+.
T Consensus 177 ~~~~v~i 183 (300)
T TIGR03866 177 IGGTVSV 183 (300)
T ss_pred CCCEEEE
Confidence 7887753
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=122.48 Aligned_cols=150 Identities=11% Similarity=0.082 Sum_probs=107.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-----eEE-EEec-----------------------------------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-----VAC-YIPS----------------------------------- 478 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-----~v~-~~~~----------------------------------- 478 (606)
|++++|+. ||.++||++.|++|++|++..-. +++ .++.
T Consensus 89 vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 89 VTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD 167 (420)
T ss_pred eeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence 88999998 99999999999999999975311 110 0000
Q ss_pred ----------------cCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-CCCeEEEE
Q 035500 479 ----------------IGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVH 541 (606)
Q Consensus 479 ----------------~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~ 541 (606)
..|.-.|..+-.. +++.++.|+|.|..|.+|+++.. .+.+... ...-+..+
T Consensus 168 G~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lkGq-----------~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 168 GSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLKGQ-----------LLQSIDTNQSSNYDAA 235 (420)
T ss_pred CCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecCCc-----------eeeeecccccccccee
Confidence 0011122222222 24567899999999999999852 2233332 22345677
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCC--------ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 542 VNSTDDQFLASGYSKNVALYDINTE--------KPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 542 ~sp~g~~LaSgs~Dg~I~IWDlrt~--------k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+|+|.++++++---.|++|.+--+ ..+..+. ||++.|...+|+|++.. ++|.|.||++|.
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r-~vtvSkDG~wri 304 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTR-AVTVSKDGKWRI 304 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcce-eEEEecCCcEEE
Confidence 8999999999999999999977532 2255677 89999999999999986 889999999986
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.5e-11 Score=120.29 Aligned_cols=142 Identities=14% Similarity=0.197 Sum_probs=114.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+++.|+| .++.|++++.||++++||.........+ .|..++.+.+|.+ ...+++|+.||.|+.+|+++.
T Consensus 16 IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~---~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~---- 85 (323)
T KOG1036|consen 16 ISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKF---KHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTG---- 85 (323)
T ss_pred eeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhhe---ecCCceeeeeccC--CceEEEeccCceEEEEEecCC----
Confidence 67888998 6667778889999999999877554433 6888999999985 468999999999999999984
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.......|..+|.+|...+..+.+++||.|++|++||.|....+-.+.. ...|.++..+ +. .|+.|..|
T Consensus 86 ------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~--~kkVy~~~v~--g~-~LvVg~~~ 154 (323)
T KOG1036|consen 86 ------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ--GKKVYCMDVS--GN-RLVVGTSD 154 (323)
T ss_pred ------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc--CceEEEEecc--CC-EEEEeecC
Confidence 3344455778899999999999999999999999999998766666663 4589888875 33 46666666
Q ss_pred CeE
Q 035500 600 TMS 602 (606)
Q Consensus 600 gtI 602 (606)
..|
T Consensus 155 r~v 157 (323)
T KOG1036|consen 155 RKV 157 (323)
T ss_pred ceE
Confidence 654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-10 Score=118.82 Aligned_cols=145 Identities=12% Similarity=0.137 Sum_probs=116.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|.+ ...+++|+.||.|+.+|+.++.... .-.|..+|.++.+.+ ..+.++|||+|++|++||.+.
T Consensus 57 lL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~---igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~----- 125 (323)
T KOG1036|consen 57 LLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQ---IGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRN----- 125 (323)
T ss_pred eeeeeccC--CceEEEeccCceEEEEEecCCccee---eccCCCceEEEEeec-cCCeEEEcccCccEEEEeccc-----
Confidence 77889976 4689999999999999999877653 237999999999997 557899999999999999997
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeE-EEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQ-LFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~-~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
+.++.++.....|.++..+ |+.++.|+.|..|.+||+|+..... .-+..-+-.+.+|++.|.+.- ++.+|-
T Consensus 126 -----~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSi 197 (323)
T KOG1036|consen 126 -----KVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-YVVSSI 197 (323)
T ss_pred -----cccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-eEEEee
Confidence 3345556655678888664 8899999999999999999865432 222223457899999997764 788888
Q ss_pred CCeEE
Q 035500 599 TTMSR 603 (606)
Q Consensus 599 DgtIR 603 (606)
||.|-
T Consensus 198 eGRVa 202 (323)
T KOG1036|consen 198 EGRVA 202 (323)
T ss_pred cceEE
Confidence 88774
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=132.16 Aligned_cols=162 Identities=15% Similarity=0.237 Sum_probs=125.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.|++|+. +|.+|++||.|-.+.|||.-..+.+..+. .||...|+++.|-|. +..+++||+.|..|+++|+...+..
T Consensus 53 VN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~ 130 (758)
T KOG1310|consen 53 VNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEG 130 (758)
T ss_pred ecceeecC-CCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccc
Confidence 99999999 99999999999999999998888877765 599999999999985 3457899999999999999863322
Q ss_pred cccccCCcceEEeec-CCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCce-------eEEEcCCC--CCCeEEEEEeC
Q 035500 519 VADARGNSSVATYYD-FEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKP-------LQLFTDMH--REPINVAKFSH 587 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~-~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~-------v~~l~~gH--~~~I~sV~fsP 587 (606)
........+...+.. ...|..++..|.+ +.|.+++.||+++-||+|.... ...+..-+ --...++..+|
T Consensus 131 ~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp 210 (758)
T KOG1310|consen 131 GMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISP 210 (758)
T ss_pred ccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecC
Confidence 111111334445553 4558899999998 7999999999999999996321 11111011 23457899999
Q ss_pred CCCeEEEEEeCCCeEE
Q 035500 588 HSPLCLLLLHLTTMSR 603 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIR 603 (606)
..++.||.|+.|-.+|
T Consensus 211 ~rp~~laVGgsdpfar 226 (758)
T KOG1310|consen 211 SRPYYLAVGGSDPFAR 226 (758)
T ss_pred CCCceEEecCCCchhh
Confidence 9999999999997665
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-12 Score=127.43 Aligned_cols=102 Identities=21% Similarity=0.351 Sum_probs=93.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEe
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATY 531 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~ 531 (606)
++|+||.-|.|||.|..+++....+. +|..+|..+.++|.++++++|||.|.+|++|++++ ..++..+
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~--ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~----------~~Cv~Vf 174 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYR--GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT----------DVCVAVF 174 (385)
T ss_pred eEEeecceeEEEEEecchhhhcccee--ccCccchhhhcCCCCCcEEEEecCCceEEEEeccC----------CeEEEEe
Confidence 88889999999999999999988665 99999999999999999999999999999999999 5688877
Q ss_pred ec----CCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 532 YD----FEQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 532 ~~----~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
.+ .+.|.+|.|+++|.+++|+|.|.++++|++..
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 63 46699999999999999999999999999984
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.4e-11 Score=128.12 Aligned_cols=165 Identities=19% Similarity=0.216 Sum_probs=127.9
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-ce-------EEEEeccCCCCCEEEEEEeeCCCCEEEEEEC
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENG-NV-------ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD 503 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg-~~-------v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~ 503 (606)
|.|. |.|+++.+ ++..+.+||-||+|+.|++... .. +..-.+.||.+.|+.+++++ ....|++||.
T Consensus 343 H~gP----Vl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~ 416 (577)
T KOG0642|consen 343 HEGP----VLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSS 416 (577)
T ss_pred ccCc----eEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecC
Confidence 5587 88999998 9999999999999999975421 11 11112459999999999997 5567999999
Q ss_pred CCeEEEEeCCCCCCCc--------ccc-----------------------c---CCcceEEee--------cCCCeEEEE
Q 035500 504 SGCVRLFDLNHIPPKV--------ADA-----------------------R---GNSSVATYY--------DFEQLTSVH 541 (606)
Q Consensus 504 DgtIklWDl~~~~~~~--------~~l-----------------------~---~~~~i~t~~--------~~~~V~sV~ 541 (606)
||+++.|+.....+.. .+. . -...+..+. ....++.|.
T Consensus 417 DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 417 DGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV 496 (577)
T ss_pred CceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence 9999999976543300 000 0 001111221 113478899
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 542 VNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 542 ~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+||...+.+++..|+.|+++|..+++++.... +|...++++++.|.|.+ |++|+.|+.|+.
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~-a~~~svtslai~~ng~~-l~s~s~d~sv~l 557 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTGKILHSMV-AHKDSVTSLAIDPNGPY-LMSGSHDGSVRL 557 (577)
T ss_pred ecCCCCeeEecccCCceecccccccccchhee-eccceecceeecCCCce-EEeecCCceeeh
Confidence 99999999999999999999999999999998 79999999999999996 889999999873
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-10 Score=110.54 Aligned_cols=138 Identities=12% Similarity=0.240 Sum_probs=96.9
Q ss_pred EEEEcCCCCCEEEEEeC----------CCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEE--EEECCCeEE
Q 035500 442 QFEYNPSNPSLMAFGTL----------DGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLV--AGSDSGCVR 508 (606)
Q Consensus 442 slafsP~dg~~LaSGs~----------DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~La--SgS~DgtIk 508 (606)
.+.|+| +|++|+.-.. -|...+|-++. +.....+.. ...++|.+++|+|. +..|+ +|..++.|.
T Consensus 10 ~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~-g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 10 KLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPN-GNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcC-CCEEEEEEccCCcccE
Confidence 467888 6766665332 23455565532 333344433 34557999999994 55543 345678999
Q ss_pred EEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 509 LFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 509 lWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
+||++. .++..+. ..+++.|.|+|+|+++++||.+ |.+.+||.++.+.+...+ | ..++.++|
T Consensus 87 lyd~~~-----------~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~~t~~~W 151 (194)
T PF08662_consen 87 LYDVKG-----------KKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SDATDVEW 151 (194)
T ss_pred EEcCcc-----------cEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-CcEEEEEE
Confidence 999974 2455553 4568899999999999998754 679999999888887776 4 45789999
Q ss_pred eCCCCeEEEEEe
Q 035500 586 SHHSPLCLLLLH 597 (606)
Q Consensus 586 sP~g~~LLaTgS 597 (606)
+|+|++++++++
T Consensus 152 sPdGr~~~ta~t 163 (194)
T PF08662_consen 152 SPDGRYLATATT 163 (194)
T ss_pred cCCCCEEEEEEe
Confidence 999998655544
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-11 Score=126.57 Aligned_cols=151 Identities=13% Similarity=0.199 Sum_probs=129.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe--------------c--cCCCCCEEEEEEeeCCCCEEEEEEC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP--------------S--IGGTNSVLGLCWLKKYPSKLVAGSD 503 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~--------------~--~gH~~~V~~L~fsp~~~~~LaSgS~ 503 (606)
+.+++++| +..+..+++.||+|.=|++.+|+...++- . .+|.+.+.+++.++ ++.+|++|+.
T Consensus 145 ~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dgkylatgg~ 222 (479)
T KOG0299|consen 145 VTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DGKYLATGGR 222 (479)
T ss_pred ceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CCcEEEecCC
Confidence 77899999 88899999999999999998887542111 1 27889999999998 6799999999
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV 582 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s 582 (606)
|..|.||+.++ ..++..+.+| +.|.+++|-...+.++++|.|++|++|++.....+.++- ||++.|..
T Consensus 223 d~~v~Iw~~~t----------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~ 291 (479)
T KOG0299|consen 223 DRHVQIWDCDT----------LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGVLG 291 (479)
T ss_pred CceEEEecCcc----------cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-CCccceee
Confidence 99999999999 4577777765 669999998777899999999999999999887777777 89999999
Q ss_pred EEEeCCCCeEEEEEeCCCeEEE
Q 035500 583 AKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.-..-+. .+..|+.|+++|.
T Consensus 292 IdaL~reR-~vtVGgrDrT~rl 312 (479)
T KOG0299|consen 292 IDALSRER-CVTVGGRDRTVRL 312 (479)
T ss_pred echhcccc-eEEeccccceeEE
Confidence 98876665 5777889999985
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-10 Score=124.20 Aligned_cols=151 Identities=14% Similarity=0.142 Sum_probs=122.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE-EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC-YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~-~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
++++||+. ..+.+|.|=.||.|-||++..+-... .+.. +-.+.|-+++|.+ +..|+|.+.+|+|.-||+.+.
T Consensus 28 I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e--~~RLFS~g~sg~i~EwDl~~l--- 100 (691)
T KOG2048|consen 28 IVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAE--GGRLFSSGLSGSITEWDLHTL--- 100 (691)
T ss_pred eEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEcc--CCeEEeecCCceEEEEecccC---
Confidence 78999998 67789999999999999998754433 3332 4467899999994 467899999999999999984
Q ss_pred cccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-CCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM-HREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g-H~~~I~sV~fsP~g~~LLaTg 596 (606)
.+...+.. .++|++++.+|.+..++.|++||.+...+...++....-..+ -+++|.+++|+|++.. +++|
T Consensus 101 -------k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-i~~G 172 (691)
T KOG2048|consen 101 -------KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-IAGG 172 (691)
T ss_pred -------ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-EEec
Confidence 34555553 567999999999999999999998888888888764332222 3589999999999985 8899
Q ss_pred eCCCeEEEc
Q 035500 597 HLTTMSRCG 605 (606)
Q Consensus 597 S~DgtIRc~ 605 (606)
+.||.|||.
T Consensus 173 s~Dg~Iriw 181 (691)
T KOG2048|consen 173 SIDGVIRIW 181 (691)
T ss_pred ccCceEEEE
Confidence 999999984
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-10 Score=114.79 Aligned_cols=133 Identities=19% Similarity=0.142 Sum_probs=100.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+.+++++.||.|++||..+++....+. +|. .+.+++|+|+ +..+ ++++.|+.|++||..++ ....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--~~~-~~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~----------~~~~ 67 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP--VGQ-RPRGITLSKD-GKLLYVCASDSDTIQVIDLATG----------EVIG 67 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE--CCC-CCCceEECCC-CCEEEEEECCCCeEEEEECCCC----------cEEE
Confidence 578899999999999999988877665 333 4678999985 4554 67788999999999873 2333
Q ss_pred EeecCCCeEEEEEccCCCEEEE-EeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 530 TYYDFEQLTSVHVNSTDDQFLA-SGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 530 t~~~~~~V~sV~~sp~g~~LaS-gs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
.+..+..+..++|+|+++.+++ ++.|+.+++||+++++.+..++ +...+..++|+|++.. +++++.++
T Consensus 68 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~-l~~~~~~~ 136 (300)
T TIGR03866 68 TLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKI-VVNTSETT 136 (300)
T ss_pred eccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCE-EEEEecCC
Confidence 4444444677899999986654 4568999999999988877776 2345788999999986 55555543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-10 Score=114.06 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=116.4
Q ss_pred eeEEEE-cCCCCCEEEEEeCCCcEEEEECCC-------CceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEE
Q 035500 440 PRQFEY-NPSNPSLMAFGTLDGEVIVINHEN-------GNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slaf-sP~dg~~LaSGs~DGtVrIWDi~t-------g~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklW 510 (606)
|..+.| +|.-|+.+|+++.|++++||.-.. .+-+..-.+...++.|++++|.|.. +-++++++.||++|||
T Consensus 62 i~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 62 IWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred EEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence 445667 678999999999999999998421 1223333345778899999999853 4469999999999999
Q ss_pred eCCCCCCCc--------c----c------------c--------------c------CC-----------c--ceEEee-
Q 035500 511 DLNHIPPKV--------A----D------------A--------------R------GN-----------S--SVATYY- 532 (606)
Q Consensus 511 Dl~~~~~~~--------~----~------------l--------------~------~~-----------~--~i~t~~- 532 (606)
+........ . + + . .+ + .+.++.
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 865421000 0 0 0 0 00 0 011222
Q ss_pred cCCCeEEEEEccC-C---CEEEEEeCCCcEEEEECCCC--------------------ceeEEEcCCCCCCeEEEEEeCC
Q 035500 533 DFEQLTSVHVNST-D---DQFLASGYSKNVALYDINTE--------------------KPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 533 ~~~~V~sV~~sp~-g---~~LaSgs~Dg~I~IWDlrt~--------------------k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
+.++|++|+|.|. | ..+|+++.|| |+||.+... +.+..+. .|.+.|+.+.|+-.
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~-~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD-DHNGEVWRVRWNMT 299 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc-CCCCceEEEEEeee
Confidence 3477999999998 3 4899999999 999998841 1244555 69999999999999
Q ss_pred CCeEEEEEeCCCeEEE
Q 035500 589 SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 589 g~~LLaTgS~DgtIRc 604 (606)
|. +++++|.||+||.
T Consensus 300 Gt-iLsStGdDG~VRL 314 (361)
T KOG2445|consen 300 GT-ILSSTGDDGCVRL 314 (361)
T ss_pred ee-EEeecCCCceeee
Confidence 87 7999999999984
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.7e-11 Score=120.00 Aligned_cols=149 Identities=13% Similarity=0.211 Sum_probs=121.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWDl~~~~~~ 518 (606)
+.|++|||.+...+|.|+...++-|+....+.+....- +|.+.|+.++|.+ +++.|++|++ |-.|-.||++..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg--gh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~--- 283 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG--GHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYS--- 283 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeec--ccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhc---
Confidence 78999999999999999999999999988777766544 9999999999998 6678999885 778999999985
Q ss_pred cccccCCcceEEeecC-C-CeEEE--EEccCCCEEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 519 VADARGNSSVATYYDF-E-QLTSV--HVNSTDDQFLASGYSKNVALYDINT-EKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~-~V~sV--~~sp~g~~LaSgs~Dg~I~IWDlrt-~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
+.++..+..+ . .=..| ...|+++++++|+.||.|++||+.. +..+..+. .|+..|+.|+++|.-+ ++
T Consensus 284 ------~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~-~~sd~vNgvslnP~mp-il 355 (406)
T KOG2919|consen 284 ------RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG-NYSDTVNGVSLNPIMP-IL 355 (406)
T ss_pred ------cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc-cccccccceecCcccc-ee
Confidence 3345444432 1 12223 3368899999999999999999998 78788888 6999999999999977 78
Q ss_pred EEEeCCCeE
Q 035500 594 LLLHLTTMS 602 (606)
Q Consensus 594 aTgS~DgtI 602 (606)
||+|....-
T Consensus 356 atssGqr~f 364 (406)
T KOG2919|consen 356 ATSSGQRIF 364 (406)
T ss_pred eeccCceee
Confidence 888876543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-11 Score=128.23 Aligned_cols=141 Identities=12% Similarity=0.114 Sum_probs=120.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVAT 530 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t 530 (606)
-++++|+..|.|+|||++...+.+.. .+|++.|+++.++. .+.++|+++..|.|-|..+.+. ....+
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~l--kdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~----------~~tt~ 158 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFL--KDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTK----------QKTTT 158 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhc--cCCcceeEEEEecC-CcceeEEeccCCcEEEEecccC----------ccccc
Confidence 59999999999999999965555544 49999999999986 6689999999999999998883 33445
Q ss_pred eecC--CCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 531 YYDF--EQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 531 ~~~~--~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|.+. ..|.-+.+||..+ ++.++|++|.|.+||+....+...+...|+.+...|+|+|..+.++++-|.|+.|-+
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence 6653 3377999999885 788889999999999999899888887899999999999999999999999987753
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.2e-11 Score=125.02 Aligned_cols=158 Identities=13% Similarity=0.133 Sum_probs=121.0
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE--EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA--CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v--~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
||++++++|..+.++||||.|++.+|||++.-... ..+....|+..|.+..|+|.++. |++.+.|..|+|||...-.
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeeccccc
Confidence 58899999999999999999999999998762222 24566799999999999996655 9999999999999985211
Q ss_pred CCcccccCCcceEEeecCC------CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE-EEEeCCC
Q 035500 517 PKVADARGNSSVATYYDFE------QLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV-AKFSHHS 589 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~------~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s-V~fsP~g 589 (606)
.. ..+..+..|.. ......|.|+.+++++|-.-..|-|+|-..++.+..+...-...|.+ .+|||.+
T Consensus 403 a~------~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 403 AK------DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred cc------CCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 10 23444444421 13455699999999999999999999999999888776444556655 5799998
Q ss_pred CeEEEEEeCCCeEE
Q 035500 590 PLCLLLLHLTTMSR 603 (606)
Q Consensus 590 ~~LLaTgS~DgtIR 603 (606)
..++|.|+..|.|-
T Consensus 477 ~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 477 DTLAAGGNSSGKIY 490 (498)
T ss_pred cceeccCCccceEE
Confidence 76666666666664
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=128.65 Aligned_cols=163 Identities=15% Similarity=0.248 Sum_probs=123.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE--E--EEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA--C--YIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v--~--~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~ 514 (606)
|+|++|+|.+++++|.|..+|+|-+||...+... . ......|..+|+.+.|...- +.-++|+|.||.|+.|+++.
T Consensus 245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~ 324 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDM 324 (555)
T ss_pred eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccc
Confidence 7899999999999999999999999999876552 2 22345799999999996521 14499999999999999865
Q ss_pred CCCCcc---------------------cc------------------------cC--C------cceEEee-cCCCeEEE
Q 035500 515 IPPKVA---------------------DA------------------------RG--N------SSVATYY-DFEQLTSV 540 (606)
Q Consensus 515 ~~~~~~---------------------~l------------------------~~--~------~~i~t~~-~~~~V~sV 540 (606)
...... .+ .+ . ++...+. |.++|.+|
T Consensus 325 l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v 404 (555)
T KOG1587|consen 325 LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV 404 (555)
T ss_pred cccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee
Confidence 321000 00 00 0 1121222 45779999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECC-CCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 541 HVNSTDDQFLASGYSKNVALYDIN-TEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 541 ~~sp~g~~LaSgs~Dg~I~IWDlr-t~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
.++|-+..++.++.|.+++||... ...++..+. .+...|++++|+|..+.+|+++..||.+-
T Consensus 405 ~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 405 SRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred ecCCCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 999998655544449999999988 677777777 47788999999999999999999999874
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-09 Score=111.68 Aligned_cols=150 Identities=18% Similarity=0.284 Sum_probs=117.1
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+..++|+| ++..+++++. |+.+++|+...+..+..+. +|...|.+++|+|.+...+++++.|++|++||...
T Consensus 158 v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~---- 230 (466)
T COG2319 158 VTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLA--GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST---- 230 (466)
T ss_pred EEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeec--cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC----
Confidence 67899999 7778888885 9999999999877777665 79999999999974433666669999999998774
Q ss_pred cccccCCcceE-EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVA-TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~-t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...+. .+..+.......|+|++..+++++.|+.+++||++.... +..+ .+|...|.++.|+|++..+++ +
T Consensus 231 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~-~ 302 (466)
T COG2319 231 ------GKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLAS-G 302 (466)
T ss_pred ------CcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEE-e
Confidence 22333 354443322227999998999999999999999997765 5555 479999999999998776555 8
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|+.++.
T Consensus 303 ~~d~~~~~ 310 (466)
T COG2319 303 SSDGTVRL 310 (466)
T ss_pred eCCCcEEE
Confidence 88876553
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=126.69 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=116.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC--CCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK--YPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~--~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
+++++++| ++++||+|..-|++|||++..-+....++ .|...|.++.|+.. ...+|+|+|.|.-|+++|+...-.
T Consensus 462 ~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e--AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 462 FRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFME--AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred eEEEEECC-CcceecccCccCceEEEEehhhhhhhhee--cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence 88999999 99999999999999999987766554444 66666666666521 123466666666666666532100
Q ss_pred Cc--------------------------------------------------------ccc-------------------
Q 035500 518 KV--------------------------------------------------------ADA------------------- 522 (606)
Q Consensus 518 ~~--------------------------------------------------------~~l------------------- 522 (606)
.. +++
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr 618 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR 618 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence 00 000
Q ss_pred -------cCCcceEEeec----CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 523 -------RGNSSVATYYD----FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 523 -------~~~~~i~t~~~----~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
...+..++|++ .+..-.+...|.|.++|++..|+++.++|.-+++++..+. ||...|+.++|.++-++
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-GHsE~VTG~kF~nDCkH 697 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-GHSEAVTGVKFLNDCKH 697 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-Ccchheeeeeecccchh
Confidence 00234455653 2447788899999999999999999999999999999998 89999999999999997
Q ss_pred EEEEEeCCCeE
Q 035500 592 CLLLLHLTTMS 602 (606)
Q Consensus 592 LLaTgS~DgtI 602 (606)
+.+.++||-|
T Consensus 698 -lISvsgDgCI 707 (1080)
T KOG1408|consen 698 -LISVSGDGCI 707 (1080)
T ss_pred -heeecCCceE
Confidence 5677778765
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=126.86 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=125.7
Q ss_pred cCCccceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeccCCCCCEEEEEEe
Q 035500 417 AWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLD-----GEVIVINHENGNVACYIPSIGGTNSVLGLCWL 491 (606)
Q Consensus 417 ~~~~i~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~D-----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fs 491 (606)
.||.+.++ +||+ +-|.+++.+| +++++|+++.. -.|++|+..+...+..++ +|.-.|+.++|+
T Consensus 514 LwPEv~KL--YGHG-------yEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~--~HsLTVT~l~FS 581 (764)
T KOG1063|consen 514 LWPEVHKL--YGHG-------YEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELE--GHSLTVTRLAFS 581 (764)
T ss_pred cchhhHHh--ccCc-------eeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheec--ccceEEEEEEEC
Confidence 45555555 4555 2388999999 99999998754 468999998877766444 999999999999
Q ss_pred eCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCC--ce
Q 035500 492 KKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTE--KP 568 (606)
Q Consensus 492 p~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~--k~ 568 (606)
| ++.+|+|.|+|.++.+|......... ......+.|.. |++.+|+|++.+|+|+|.|++|++|-.... +.
T Consensus 582 p-dg~~LLsvsRDRt~sl~~~~~~~~~e------~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 582 P-DGRYLLSVSRDRTVSLYEVQEDIKDE------FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred C-CCcEEEEeecCceEEeeeeecccchh------hhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh
Confidence 9 77999999999999999986532211 11112333444 899999999999999999999999998876 33
Q ss_pred eEE-EcCCCCCCeEEEEEeCCC----CeEEEEEeCCCeE
Q 035500 569 LQL-FTDMHREPINVAKFSHHS----PLCLLLLHLTTMS 602 (606)
Q Consensus 569 v~~-l~~gH~~~I~sV~fsP~g----~~LLaTgS~DgtI 602 (606)
+.. -...+..+|++++|.|-. ..+++.|-..|.|
T Consensus 655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI 693 (764)
T KOG1063|consen 655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEI 693 (764)
T ss_pred hhhhchhccCCceeeEEeeccccccccceEEEEecccEE
Confidence 322 111478999999998643 3477888777765
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=128.03 Aligned_cols=139 Identities=12% Similarity=0.234 Sum_probs=109.9
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC------CCCCEEEEEEeeCCCCEEEEEECCC
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG------GTNSVLGLCWLKKYPSKLVAGSDSG 505 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g------H~~~V~~L~fsp~~~~~LaSgS~Dg 505 (606)
|++. |.++.|+| .+++||+.+-||+|+|||++++....++.... ....+..++|+|+ +..++..+.|+
T Consensus 137 h~ap----Vl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk-~g~la~~~~d~ 210 (933)
T KOG1274|consen 137 HDAP----VLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK-GGTLAVPPVDN 210 (933)
T ss_pred cCCc----eeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCC-CCeEEeeccCC
Confidence 4465 88999999 99999999999999999999988776554221 1345678999995 46777888899
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEee--c-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYY--D-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV 582 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~--~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s 582 (606)
+|++++..... ....+. + +..+..++|+|.|.++|+++.||.|.|||..+.+. . .....|.+
T Consensus 211 ~Vkvy~r~~we----------~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~-~~~~~Vc~ 275 (933)
T KOG1274|consen 211 TVKVYSRKGWE----------LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----H-EFKRAVCC 275 (933)
T ss_pred eEEEEccCCce----------eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----c-cccceeEE
Confidence 99999988843 333443 2 33499999999999999999999999999998322 1 23578999
Q ss_pred EEEeCCCCe
Q 035500 583 AKFSHHSPL 591 (606)
Q Consensus 583 V~fsP~g~~ 591 (606)
++|.|+...
T Consensus 276 ~aw~p~~n~ 284 (933)
T KOG1274|consen 276 EAWKPNANA 284 (933)
T ss_pred EecCCCCCe
Confidence 999998774
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-10 Score=123.07 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=121.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++.+| .+..++.|+.||.+..++...++......+...++.|.++.|+| .+..+++|+.||.|++||..++....
T Consensus 113 IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 113 IWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred eeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEE
Confidence 89999999 77899999999988888888887766555556678999999999 56779999999999999999853211
Q ss_pred ccccCCcceEEeecCCC--eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQ--LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~--V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.. ...+..+....+ |++|.+- ....+++|..-|+|++||...+..++.+. .|...|.+++.++++.. +.++|
T Consensus 191 -~~--~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav~~~~d~-vfsaG 264 (691)
T KOG2048|consen 191 -II--TMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAVADNEDR-VFSAG 264 (691)
T ss_pred -Ee--eecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEEcCCCCe-EEEcc
Confidence 00 000111111122 8888887 45788999999999999999999999999 69999999999999886 45666
Q ss_pred CCCeE
Q 035500 598 LTTMS 602 (606)
Q Consensus 598 ~DgtI 602 (606)
.|+.|
T Consensus 265 vd~~i 269 (691)
T KOG2048|consen 265 VDPKI 269 (691)
T ss_pred CCCce
Confidence 66544
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=116.75 Aligned_cols=151 Identities=11% Similarity=0.139 Sum_probs=118.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEC-CCCceEEEEeccCC-----CCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINH-ENGNVACYIPSIGG-----TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi-~tg~~v~~~~~~gH-----~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
+.|++|+| ||.+|.+| ....|||||+ +.|+....+....| .+-+.+++|+|.+...++.||.-.++-|+.-.
T Consensus 161 AhsL~Fs~-DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~ 238 (406)
T KOG2919|consen 161 AHSLQFSP-DGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD 238 (406)
T ss_pred heeEEecC-CCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC
Confidence 67899999 99998766 5788999998 55665544433333 67789999999988899999999998888766
Q ss_pred CCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeC-CCcEEEEECCC-CceeEEEcCCCCC-CeEEEEE--eC
Q 035500 514 HIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGY-SKNVALYDINT-EKPLQLFTDMHRE-PINVAKF--SH 587 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt-~k~v~~l~~gH~~-~I~sV~f--sP 587 (606)
. ..|+..+.+ .+.|+.++|+++|+.|++|+. |-.|..||+|. +.++..+. .|.+ .-..|-| .|
T Consensus 239 ~----------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~-rhv~~TNQRI~FDld~ 307 (406)
T KOG2919|consen 239 G----------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE-RHVGDTNQRILFDLDP 307 (406)
T ss_pred C----------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh-hhccCccceEEEecCC
Confidence 6 456666665 566999999999999999974 68999999995 56677777 5755 3334555 58
Q ss_pred CCCeEEEEEeCCCeEEE
Q 035500 588 HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIRc 604 (606)
.+. +||+|+.||.|+.
T Consensus 308 ~~~-~LasG~tdG~V~v 323 (406)
T KOG2919|consen 308 KGE-ILASGDTDGSVRV 323 (406)
T ss_pred CCc-eeeccCCCccEEE
Confidence 887 5899999999985
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-10 Score=117.75 Aligned_cols=148 Identities=17% Similarity=0.187 Sum_probs=120.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC------CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN------GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t------g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
|..++|+- ++++||+|+.|..+++|+++. .+++... ...|.+.|.+++|.. ....++||+.+++|...|+.
T Consensus 59 iNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H~SNIF~L~F~~-~N~~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 59 INALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPHRSNIFSLEFDL-ENRFLYSGERWGTVIKHDIE 135 (609)
T ss_pred cceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCccccceEEEEEcc-CCeeEecCCCcceeEeeecc
Confidence 88999998 799999999999999999753 2444332 346778999999997 55789999999999999999
Q ss_pred CCCCCcccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeEEE-cCCCCCCeEEEEEeCC
Q 035500 514 HIPPKVADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEK-PLQLF-TDMHREPINVAKFSHH 588 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k-~v~~l-~~gH~~~I~sV~fsP~ 588 (606)
+ +..+..+.+. +.|..+..||.+++|++.+.++.|.+||+|... +...+ ..-.....+++-|+|.
T Consensus 136 t----------~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 136 T----------KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred c----------ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 8 5667777764 479999999999999999999999999999654 32222 2124567889999999
Q ss_pred CCeEEEEEeCCC
Q 035500 589 SPLCLLLLHLTT 600 (606)
Q Consensus 589 g~~LLaTgS~Dg 600 (606)
.+.++++++..+
T Consensus 206 ~P~Li~~~~~~~ 217 (609)
T KOG4227|consen 206 TPALILVNSETG 217 (609)
T ss_pred CceeEEeccccC
Confidence 999999887664
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5e-10 Score=110.81 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=116.1
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCC---C-----ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHEN---G-----NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~t---g-----~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
+-+|+| .++++++|+.+|+|.|+.+++ + .....+...+|.++|+.++|.- ..|++|+. |.|+=|..+
T Consensus 15 ~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~ 89 (325)
T KOG0649|consen 15 AQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWN 89 (325)
T ss_pred HHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEeeeh
Confidence 346899 889999999999999998653 1 1122344469999999999983 57788775 999999877
Q ss_pred CCCCC---cccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPK---VADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~---~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
..... ...+.-..|.++-... ..|+++...|..+-++.++.|+.++-||+++|+..++++ ||++.|.++.--...
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeeecccC
Confidence 64321 1111111222221112 338999999998877778899999999999999999999 899999999984444
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
+. +.+|++||++|.
T Consensus 169 ~q-ilsG~EDGtvRv 182 (325)
T KOG0649|consen 169 GQ-ILSGAEDGTVRV 182 (325)
T ss_pred cc-eeecCCCccEEE
Confidence 43 679999999995
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-09 Score=116.11 Aligned_cols=159 Identities=13% Similarity=0.146 Sum_probs=121.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
++++.||| ...++.+|+.||+++||-+.. ...+..+. --..+|.+.+|.|++...++++|.-.....||+.+.+.
T Consensus 216 I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~--l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 216 ITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH--LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred ceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeee--eccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 88999999 777999999999999998863 23333333 33568999999996655899999999999999987532
Q ss_pred Cc-cccc----------------------------------CCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 035500 518 KV-ADAR----------------------------------GNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYD 562 (606)
Q Consensus 518 ~~-~~l~----------------------------------~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWD 562 (606)
.. .++. ....+.+++-.+.|.++.|+.++..+++++.+|.|.+||
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 11 0000 112233444456688999999999999999999999999
Q ss_pred CCCCceeEEEcCCCCCCe--EEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 563 INTEKPLQLFTDMHREPI--NVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 563 lrt~k~v~~l~~gH~~~I--~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++...+++.+.. .+.| ++++.++++.+ ||+||.-|+|-+
T Consensus 373 l~~~~~~~rf~D--~G~v~gts~~~S~ng~y-lA~GS~~GiVNI 413 (514)
T KOG2055|consen 373 LRQNSCLHRFVD--DGSVHGTSLCISLNGSY-LATGSDSGIVNI 413 (514)
T ss_pred cCCcceEEEEee--cCccceeeeeecCCCce-EEeccCcceEEE
Confidence 999999888874 3444 56777899985 999999998864
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.8e-10 Score=118.96 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=121.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEE--EEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVL--GLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~--~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|+.++|+. ++..|.+.+.+|.|.+||+++..++..+.-. +.|. .+|.++ ++.+||+||..|.|.|||.++...
T Consensus 347 v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~---G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 347 VSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDD---GSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred EeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeec---CccceeeeeecC-CCceEEeccCcceEEEeccchhhc
Confidence 88999997 8899999999999999999998888766533 3444 455555 678999999999999999776322
Q ss_pred CcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcC--CCCCCeEEEEEeCCCCeE
Q 035500 518 KVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTD--MHREPINVAKFSHHSPLC 592 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~--gH~~~I~sV~fsP~g~~L 592 (606)
..+ ..|+.++.. ...|++++|+|+++++|.+| ....+++--+.+......++. ..-+.|+|++|+|.|.+
T Consensus 422 s~~----PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~- 496 (514)
T KOG2055|consen 422 STN----PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGY- 496 (514)
T ss_pred cCC----CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCce-
Confidence 211 456666664 56799999999999887776 457899988887777666662 23467999999999995
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+|.|..+|.++.
T Consensus 497 lAvGNe~grv~l 508 (514)
T KOG2055|consen 497 LAVGNEAGRVHL 508 (514)
T ss_pred EEeecCCCceee
Confidence 899999998874
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=115.49 Aligned_cols=142 Identities=16% Similarity=0.302 Sum_probs=113.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEe--------ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccccc
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIP--------SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~--------~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~ 523 (606)
++++|..+|.|-+||+.++..+..++ ...|..+|.++.+.+. -..=++|+.+..+..|.++....
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~~s~g------ 239 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLNHSTG------ 239 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeeccccC------
Confidence 66778899999999999874433222 2468999999999873 23446788888899999887422
Q ss_pred CCcceEE-ee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCe
Q 035500 524 GNSSVAT-YY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 524 ~~~~i~t-~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
.-++.. .. .+..|..+.+-|+++.+||+|.|+.||+|..++.+++..+. -|+..|++++|+|+.+ ++|++|.|+.
T Consensus 240 -slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfspd~~-lmAaaskD~r 316 (323)
T KOG0322|consen 240 -SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSPDCE-LMAAASKDAR 316 (323)
T ss_pred -cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCCCCc-hhhhccCCce
Confidence 112221 22 23448899999999999999999999999999999999999 5999999999999976 7999999998
Q ss_pred EE
Q 035500 602 SR 603 (606)
Q Consensus 602 IR 603 (606)
|-
T Consensus 317 IS 318 (323)
T KOG0322|consen 317 IS 318 (323)
T ss_pred EE
Confidence 75
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=123.05 Aligned_cols=148 Identities=14% Similarity=0.243 Sum_probs=129.9
Q ss_pred EcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccccc
Q 035500 445 YNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 445 fsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~ 523 (606)
+|| .--+.++.|+.+|.+++|++++++.+.+++ ++...|+++.-+| --..++.|..+|+|.+++++.
T Consensus 166 ~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~--~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~--------- 233 (910)
T KOG1539|consen 166 LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ--EFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKF--------- 233 (910)
T ss_pred ecchhheeeEEEeecCCcEEEEEeccCcEEEEec--ccccceeEeccCC-cceEEEEeccCceEEEEEccc---------
Confidence 566 334789999999999999999999998777 8889999999888 346799999999999999998
Q ss_pred CCcceEEeecC-CCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCe
Q 035500 524 GNSSVATYYDF-EQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 524 ~~~~i~t~~~~-~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
.+-+.+|++. ++|++++|.-||+ ++++|+..|.+.+||++..+.+.....+|.+.|+...|-|..+ +++|++.|..
T Consensus 234 -dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnS 311 (910)
T KOG1539|consen 234 -DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNS 311 (910)
T ss_pred -CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCc
Confidence 4568899985 8899999999985 7888888899999999999998888888999999999999877 7899999988
Q ss_pred EEEcC
Q 035500 602 SRCGI 606 (606)
Q Consensus 602 IRc~i 606 (606)
.|..|
T Consensus 312 lk~~v 316 (910)
T KOG1539|consen 312 LKVWV 316 (910)
T ss_pred eeEEE
Confidence 87653
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9e-10 Score=119.38 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=96.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC------CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN------GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t------g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
++.++|+| ....+++|+.||++++|+++. +...+.+.+.+|.++|.|++..+ ++..++|||.||+|+.|++.
T Consensus 297 ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 297 IRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred hhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccC
Confidence 67889999 555889999999999999832 33445566779999999999987 77899999999999999877
Q ss_pred CCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q 035500 514 HIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP 568 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~ 568 (606)
.....-..-.......++.+ .++|+.+++|+....+++++.||++++|+.....+
T Consensus 375 ~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 375 PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred CCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 32111111110112234454 46699999999999999999999999998875543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-09 Score=115.48 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=115.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+++..+| .|.+||+|+.||+||||.+.+|+++.++.+. +.|.+++|+|....-+++++.+..+.+-+-.-+....
T Consensus 403 Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e 478 (733)
T KOG0650|consen 403 VRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLE 478 (733)
T ss_pred EEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEecCceEEeCccccchhh
Confidence 89999999 9999999999999999999999999988764 4699999999655556666666666665543221100
Q ss_pred ---------------------ccccC------Ccc-eEEeecCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCce
Q 035500 520 ---------------------ADARG------NSS-VATYYDFEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKP 568 (606)
Q Consensus 520 ---------------------~~l~~------~~~-i~t~~~~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~ 568 (606)
..|.. ... ..++.+..+|.+|.||..|.+|++...+ ..|.|+++...+.
T Consensus 479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s 558 (733)
T KOG0650|consen 479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS 558 (733)
T ss_pred hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc
Confidence 01110 011 2355677889999999999999988654 6799999998877
Q ss_pred eEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 569 LQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 569 v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..-|. -..+.|.++.|+|..+++|++.-
T Consensus 559 Q~PF~-kskG~vq~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 559 QSPFR-KSKGLVQRVKFHPSKPYLFVATQ 586 (733)
T ss_pred cCchh-hcCCceeEEEecCCCceEEEEec
Confidence 76676 35688999999999998776654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-10 Score=123.13 Aligned_cols=162 Identities=12% Similarity=0.105 Sum_probs=123.3
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeccCCCCCEEEEEEeeCC----------CCEEEEEECCCeEEE
Q 035500 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENG-NVACYIPSIGGTNSVLGLCWLKKY----------PSKLVAGSDSGCVRL 509 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGtVrIWDi~tg-~~v~~~~~~gH~~~V~~L~fsp~~----------~~~LaSgS~DgtIkl 509 (606)
-.+.|+| ..+.+.....|+.++|||+..- +.-+...+..|..-||++.-.|.+ ..-|++||.|++|++
T Consensus 328 IA~~Fde-t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 328 IACQFDE-TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eEEEecC-CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 3578998 6678889999999999999763 333334455788889888766522 245999999999999
Q ss_pred EeCCCCCCCc----ccc------------------------cCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 035500 510 FDLNHIPPKV----ADA------------------------RGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALY 561 (606)
Q Consensus 510 WDl~~~~~~~----~~l------------------------~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IW 561 (606)
||+....... +++ ..+....++.....+.+++++|+|+++|+|..-|++++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9987631100 000 112233344556669999999999999999999999999
Q ss_pred ECCCCceeEEEcCCCCCCeEEEEEeC--CCCeEEEEEeCCCeEEE
Q 035500 562 DINTEKPLQLFTDMHREPINVAKFSH--HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 562 Dlrt~k~v~~l~~gH~~~I~sV~fsP--~g~~LLaTgS~DgtIRc 604 (606)
|+..-+....++ +|...|.|+.|+. -+..+||++|.|+.|..
T Consensus 487 ~Lq~l~~~~~~e-AHesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 487 DLQELEYTCFME-AHESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred Eehhhhhhhhee-cccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 999888888888 8999999999973 24568999999998875
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.5e-10 Score=111.90 Aligned_cols=155 Identities=14% Similarity=0.207 Sum_probs=118.4
Q ss_pred ccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCC-CCCEEEEEEeeCCCCEEEEEECCC-eE
Q 035500 430 IYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGG-TNSVLGLCWLKKYPSKLVAGSDSG-CV 507 (606)
Q Consensus 430 ~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH-~~~V~~L~fsp~~~~~LaSgS~Dg-tI 507 (606)
+.|+-+ |..++|.....+.+|+.|.||.||+||++.-+.-..+--.+. ..+..-++|++++++++|+-..|. .|
T Consensus 193 IAHDKE----V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V 268 (364)
T KOG0290|consen 193 IAHDKE----VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKV 268 (364)
T ss_pred EecCcc----eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceE
Confidence 345666 889999986678999999999999999987554433222233 567889999999999999877665 78
Q ss_pred EEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCc------eeEEEcCCCCCC
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTEK------PLQLFTDMHREP 579 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k------~v~~l~~gH~~~ 579 (606)
.+-|++.. ..++..++.| ..|++|+|.|.+ ..+.|+|+|..+.|||+...- ++.... -.+.
T Consensus 269 ~iLDiR~P---------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~--a~~E 337 (364)
T KOG0290|consen 269 VILDIRVP---------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT--AGGE 337 (364)
T ss_pred EEEEecCC---------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--ccce
Confidence 89999985 3477777755 559999999996 699999999999999998531 222222 4678
Q ss_pred eEEEEEeCCCCeEEEEEeCC
Q 035500 580 INVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~D 599 (606)
|+.+.|+|..+--++.+...
T Consensus 338 VNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 338 VNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeeeeecccCCCEEEEEecC
Confidence 99999997766556666554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-10 Score=124.14 Aligned_cols=145 Identities=11% Similarity=0.228 Sum_probs=120.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..++|-| ||..++.+..| .+.+||...|....+++ ||++.|++++|+. ++..++||+.|+.|-+|.-..
T Consensus 15 i~d~afkP-DGsqL~lAAg~-rlliyD~ndG~llqtLK--gHKDtVycVAys~-dGkrFASG~aDK~VI~W~~kl----- 84 (1081)
T KOG1538|consen 15 INDIAFKP-DGTQLILAAGS-RLLVYDTSDGTLLQPLK--GHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKL----- 84 (1081)
T ss_pred hheeEECC-CCceEEEecCC-EEEEEeCCCcccccccc--cccceEEEEEEcc-CCceeccCCCceeEEEecccc-----
Confidence 77899999 88877776544 58999999999988766 9999999999997 789999999999999998775
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
..+..+.|.+.|.++.|+|-...++|++- ....+|....... ...+ ...+|.+.+|+.+|.+ ++-|-.|
T Consensus 85 ------EG~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-~K~k--ss~R~~~CsWtnDGqy-lalG~~n 153 (1081)
T KOG1538|consen 85 ------EGILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-SKHK--SSSRIICCSWTNDGQY-LALGMFN 153 (1081)
T ss_pred ------cceeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-Hhhh--hheeEEEeeecCCCcE-EEEeccC
Confidence 35677889999999999999999999986 3467897764433 2222 3578999999999985 8999999
Q ss_pred CeEEEc
Q 035500 600 TMSRCG 605 (606)
Q Consensus 600 gtIRc~ 605 (606)
|+|.++
T Consensus 154 GTIsiR 159 (1081)
T KOG1538|consen 154 GTISIR 159 (1081)
T ss_pred ceEEee
Confidence 998763
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.5e-09 Score=108.61 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=118.8
Q ss_pred eeEEEEcC----CCCCEEEEEeCCCcEEEEECCC-C--ceEEEEeccCCCCCEEEEEEeeC---CCCEEEEEECCCeEEE
Q 035500 440 PRQFEYNP----SNPSLMAFGTLDGEVIVINHEN-G--NVACYIPSIGGTNSVLGLCWLKK---YPSKLVAGSDSGCVRL 509 (606)
Q Consensus 440 V~slafsP----~dg~~LaSGs~DGtVrIWDi~t-g--~~v~~~~~~gH~~~V~~L~fsp~---~~~~LaSgS~DgtIkl 509 (606)
+..++|++ ...+.+|++|.+ ++.+|.... + ..+..+.-..|...-+.++|.-+ +...++.||.-|.|+|
T Consensus 41 I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrV 119 (385)
T KOG1034|consen 41 IFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRV 119 (385)
T ss_pred cceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEE
Confidence 34455654 456677777755 488888654 3 23333333457888899999753 2346888999999999
Q ss_pred EeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEc--CCCCCCeEEEEE
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFT--DMHREPINVAKF 585 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~--~gH~~~I~sV~f 585 (606)
.|+.+ ......+.+| .+|+.+.++|.. ++++++|.|..|++|++++..++..|. .||...|.++.|
T Consensus 120 id~~~----------~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 120 IDVVS----------GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred Eecch----------hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99998 3455666654 569999999996 799999999999999999999998886 259999999999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+++|.+ +++||.|.+++.
T Consensus 190 ~~~gd~-i~ScGmDhslk~ 207 (385)
T KOG1034|consen 190 SLDGDR-IASCGMDHSLKL 207 (385)
T ss_pred cCCCCe-eeccCCcceEEE
Confidence 999995 899999998864
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=117.65 Aligned_cols=137 Identities=16% Similarity=0.230 Sum_probs=109.5
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCC--------------CceEEEEe------------ccCCCCCEEEEEEee
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHEN--------------GNVACYIP------------SIGGTNSVLGLCWLK 492 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~t--------------g~~v~~~~------------~~gH~~~V~~L~fsp 492 (606)
+|+|+.|-|-+...+..+..+|.+.++|.+. +....... ..-..+.|...+|+|
T Consensus 221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~ 300 (636)
T KOG2394|consen 221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP 300 (636)
T ss_pred ceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC
Confidence 4889999998888999999999999997421 11111111 111245788999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE
Q 035500 493 KYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQL 571 (606)
Q Consensus 493 ~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~ 571 (606)
++.+||+.|.||.+||+|+.+.. .+..++ ..+...+|+|+|||+++++||+|--|.+|.+..++.+..
T Consensus 301 -DG~~LA~VSqDGfLRvF~fdt~e----------Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 301 -DGKYLATVSQDGFLRIFDFDTQE----------LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred -CCceEEEEecCceEEEeeccHHH----------HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 78999999999999999999842 222232 246699999999999999999999999999999998888
Q ss_pred EcCCCCCCeEEEEEeC
Q 035500 572 FTDMHREPINVAKFSH 587 (606)
Q Consensus 572 l~~gH~~~I~sV~fsP 587 (606)
=+ ||++.|+.|+|.|
T Consensus 370 Gq-GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 370 GQ-GHKSWVSVVAFDP 384 (636)
T ss_pred cc-ccccceeeEeecc
Confidence 77 8999999999996
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.4e-09 Score=103.56 Aligned_cols=140 Identities=17% Similarity=0.293 Sum_probs=99.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++-..|+.+.++ +++.|+.++-||+++|+....+. ||++.|.++.--. ....++||++||++++||.++.+...
T Consensus 117 INam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~~r--GHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 117 INAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQREYR--GHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred cceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEEEc--CCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeE
Confidence 66788899666555 45589999999999999988766 9999999998743 34579999999999999999854211
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
..-..+.+-....+. ..|.+++.+ ..+++.|+. ..+.+|.+|..+++.+|+. ..++..+.|..+
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~t~vfpi--pa~v~~v~F~~d 257 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSESTCVFPI--PARVHLVDFVDD 257 (325)
T ss_pred EeccccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCceEEEec--ccceeEeeeecc
Confidence 100001111111111 226666554 567776654 7899999999999998884 677888888643
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-08 Score=103.57 Aligned_cols=148 Identities=20% Similarity=0.323 Sum_probs=115.0
Q ss_pred eeEEEE-cCCCCC-EEEEEeC-CCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEeCCC
Q 035500 440 PRQFEY-NPSNPS-LMAFGTL-DGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFDLNH 514 (606)
Q Consensus 440 V~slaf-sP~dg~-~LaSGs~-DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWDl~~ 514 (606)
+..+.+ ++ ++. .++..+. |+.+++||... ......+. +|...|..++|+| ++..+++++. |+.+++|+...
T Consensus 112 ~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 112 VSKLALSSP-DGNSILLASSSLDGTVKLWDLSTPGKLIRTLE--GHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred eeeEEEECC-CcceEEeccCCCCccEEEEEecCCCeEEEEEe--cCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCC
Confidence 444455 77 555 5555445 99999999987 55555444 8999999999999 4557888885 99999999997
Q ss_pred CCCCcccccCCcceEEeec-CCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeE-EEcCCCCCCeEEEEEeCCCCe
Q 035500 515 IPPKVADARGNSSVATYYD-FEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQ-LFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~-~l~~gH~~~I~sV~fsP~g~~ 591 (606)
...+..+.+ ...|.+++|+|++. .+++++.|+.|++||.+.+.... .+. +|...+ ...|+|++.
T Consensus 188 ----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~- 254 (466)
T COG2319 188 ----------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPDGS- 254 (466)
T ss_pred ----------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCCCC-
Confidence 235556664 56699999999988 66666999999999999888877 566 688775 448999995
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
.+++++.|+.++.
T Consensus 255 ~~~~~~~d~~~~~ 267 (466)
T COG2319 255 LLASGSSDGTIRL 267 (466)
T ss_pred EEEEecCCCcEEE
Confidence 5779999999886
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-09 Score=109.99 Aligned_cols=158 Identities=14% Similarity=0.187 Sum_probs=115.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++-++||+ .-.-+|++..|-.|++||-.. +....++ ......|.+++|-|....-|+.|... -|++|.........
T Consensus 101 lr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lk-s~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 101 LRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLK-SVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred eeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceec-chhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 77789999 777889999999999999876 3333332 24456899999999776767766665 58999876532211
Q ss_pred cc--c--cCCcceEEeecCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 520 AD--A--RGNSSVATYYDFEQLTSVHVNSTDDQFLASGY-SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 520 ~~--l--~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
.. + .....+....+|.+|++++|+++|..+++++. |..|.|||..++..+..... --+.+.-++|+|++.++||
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEEEcCCCCEEEE
Confidence 11 0 01123334456788999999999999999885 58899999999887666642 4578999999999998664
Q ss_pred EEeCCCeEE
Q 035500 595 LLHLTTMSR 603 (606)
Q Consensus 595 TgS~DgtIR 603 (606)
++.|+..|
T Consensus 256 -At~davfr 263 (445)
T KOG2139|consen 256 -ATCDAVFR 263 (445)
T ss_pred -ecccceee
Confidence 55566554
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-09 Score=118.06 Aligned_cols=154 Identities=8% Similarity=0.053 Sum_probs=108.3
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEECCCCceEE------EEeccCC---CCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINHENGNVAC------YIPSIGG---TNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi~tg~~v~------~~~~~gH---~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
|+.+.| +|...||++|. |+.|+|||+.+..... ...+..| .-.+.++.....+..++|+|. |++|.+
T Consensus 221 vTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ 297 (720)
T KOG0321|consen 221 VTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYF 297 (720)
T ss_pred eEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEE
Confidence 444445 37789999887 9999999997643321 1122233 234556666653444556665 999999
Q ss_pred EeCCCCCCCcccccCCcceEEeecCCC---eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFEQ---LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~~---V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
|++.... ..|+..+.++-. -..-..+|++..+++|+.|...++|.+.+.+.-..+..||...|++|+|.
T Consensus 298 ynm~s~s--------~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~ 369 (720)
T KOG0321|consen 298 YNMRSLS--------ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL 369 (720)
T ss_pred EeccccC--------cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence 9998853 345555554311 22233689999999999999999999998766444444899999999999
Q ss_pred CCCCeEEEEEeCCCeEEE
Q 035500 587 HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIRc 604 (606)
|....=++|++.|..++.
T Consensus 370 pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 370 PSATTPVATCSDDFRVKI 387 (720)
T ss_pred cccCCCceeeccCcceEE
Confidence 876555888899988774
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-09 Score=102.62 Aligned_cols=115 Identities=14% Similarity=0.229 Sum_probs=87.2
Q ss_pred eeEEEEcCCCCCEEEE--EeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC---CCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAF--GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD---SGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaS--Gs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~---DgtIklWDl~~ 514 (606)
|.+++|+| +++.+|+ |..++.|.+||++ ++.+..+. ...+..+.|+| .+++++.|+. .|.+.+||.+.
T Consensus 62 I~~~~WsP-~g~~favi~g~~~~~v~lyd~~-~~~i~~~~----~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 62 IHDVAWSP-NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG----TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred eEEEEECc-CCCEEEEEEccCCcccEEEcCc-ccEeEeec----CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 78999999 7777654 4467899999997 55554432 45678999999 6788888764 46799999997
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC------CCcEEEEECCCCceeEEEc
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY------SKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~------Dg~I~IWDlrt~k~v~~l~ 573 (606)
...+.+..+. .++.++|+|+|+++++++. |+.++||+.. |+.+....
T Consensus 135 ----------~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 135 ----------KKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred ----------CEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 3455555544 4789999999999998864 7899999985 66655443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=106.48 Aligned_cols=150 Identities=15% Similarity=0.109 Sum_probs=116.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc-CCCCCEEEEEEeeCCCCEEEE-EE-CCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI-GGTNSVLGLCWLKKYPSKLVA-GS-DSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~-gH~~~V~~L~fsp~~~~~LaS-gS-~DgtIklWDl~~~~ 516 (606)
|.++.++. +.+++.=.+. |+|||+++.+.+.++... .+...+.++.+++. ..+++- ++ ..|.|.+||...
T Consensus 90 IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d~~n-- 162 (391)
T KOG2110|consen 90 ILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFDTIN-- 162 (391)
T ss_pred eEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCC-CceEEecCCCCCceEEEEEccc--
Confidence 45566654 5666655444 999999999999888765 56667878777763 345543 22 468999999988
Q ss_pred CCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCc-EEEEECCCCceeEEEcCCC-CCCeEEEEEeCCCCeEE
Q 035500 517 PKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKN-VALYDINTEKPLQLFTDMH-REPINVAKFSHHSPLCL 593 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~-I~IWDlrt~k~v~~l~~gH-~~~I~sV~fsP~g~~LL 593 (606)
-.++..+. |++++.+++||++|.++||+|+.|+ ||++++.+|+.+.+|..|. ...|.+++|+|++++ +
T Consensus 163 --------l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~-L 233 (391)
T KOG2110|consen 163 --------LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF-L 233 (391)
T ss_pred --------ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe-E
Confidence 45676676 6678999999999999999999887 7899999999999999664 357899999999995 6
Q ss_pred EEEeCCCeEEEc
Q 035500 594 LLLHLTTMSRCG 605 (606)
Q Consensus 594 aTgS~DgtIRc~ 605 (606)
+++|..++|+.+
T Consensus 234 ~~sS~TeTVHiF 245 (391)
T KOG2110|consen 234 AASSNTETVHIF 245 (391)
T ss_pred EEecCCCeEEEE
Confidence 777777888764
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-09 Score=117.72 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=118.2
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe---ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP---SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~---~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
..|+.++||| |+.+|++.|.|+++.+|....+.. ..+. ...|+.-|++..|+| ++.+|+|+|+|++|++|....
T Consensus 573 LTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~-~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 573 LTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIK-DEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred eEEEEEEECC-CCcEEEEeecCceEEeeeeecccc-hhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccC
Confidence 3489999999 999999999999999999754221 1222 458999999999999 567899999999999999887
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCC-----CEEEEEeCCCcEEEEECCCC-ce----eEEE------cCCCCC
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTD-----DQFLASGYSKNVALYDINTE-KP----LQLF------TDMHRE 578 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g-----~~LaSgs~Dg~I~IWDlrt~-k~----v~~l------~~gH~~ 578 (606)
.... - -..+...++..+|+.++|.|.. ..++.|-..|.|.+|..... +. ...+ ..+|.+
T Consensus 650 ~~d~--~---i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 724 (764)
T KOG1063|consen 650 LRDK--Y---ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDS 724 (764)
T ss_pred chhh--h---hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHH
Confidence 4210 0 1112455567889999998752 36788888999999985411 11 0000 125788
Q ss_pred CeEEEEEeCCC---------CeEEEEEeCCCeEEEc
Q 035500 579 PINVAKFSHHS---------PLCLLLLHLTTMSRCG 605 (606)
Q Consensus 579 ~I~sV~fsP~g---------~~LLaTgS~DgtIRc~ 605 (606)
.|+.+.|.|.. ..-|+.|+.|..+|++
T Consensus 725 aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~ 760 (764)
T KOG1063|consen 725 AVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIF 760 (764)
T ss_pred hhheeEeccccccccccccceeEEeeecccceeEEe
Confidence 99999999862 2347999999999975
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=117.83 Aligned_cols=139 Identities=13% Similarity=0.158 Sum_probs=100.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+-.|+| +|.-++++|.||.|++|.-. |....++. ....+|+|++|.|+..+.+++.+.--.|+ -+..
T Consensus 107 ~~~gRW~~-dGtgLlt~GEDG~iKiWSrs-GMLRStl~--Q~~~~v~c~~W~p~S~~vl~c~g~h~~IK--pL~~----- 175 (737)
T KOG1524|consen 107 ISSGRWSP-DGAGLLTAGEDGVIKIWSRS-GMLRSTVV--QNEESIRCARWAPNSNSIVFCQGGHISIK--PLAA----- 175 (737)
T ss_pred hhhcccCC-CCceeeeecCCceEEEEecc-chHHHHHh--hcCceeEEEEECCCCCceEEecCCeEEEe--eccc-----
Confidence 55667999 99999999999999999854 54443322 44568999999997666666655443333 3332
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+..++.| +-|.++.|++.+++++|||.|-..++||.. |..+..-. +|.-+|++++|+|+. +++.+|.
T Consensus 176 -----n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~-~~ey~ITSva~npd~--~~~v~S~ 246 (737)
T KOG1524|consen 176 -----NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA-AEEYAITSVAFNPEK--DYLLWSY 246 (737)
T ss_pred -----ccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC-hhccceeeeeecccc--ceeeeee
Confidence 2234556654 559999999999999999999999999986 44444444 578888888888883 4555654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-08 Score=107.42 Aligned_cols=155 Identities=16% Similarity=0.266 Sum_probs=108.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|++|.+ +++ ++||.++|.|.||+..+.+...... .|.+.|.+++... + ..|+||+.|..|-.||-...+...
T Consensus 249 Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr-~-GtllSGgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 249 VLCVTFLE-NGD-VITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCMLR-D-GTLLSGGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred EEEEEEcC-CCC-EEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEEec-C-ccEeecCccceEEecccccccccc
Confidence 88999999 774 6699999999999998777666554 9999999999985 3 578889999999999943321110
Q ss_pred ccc-------------------------------cCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEEC-----
Q 035500 520 ADA-------------------------------RGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDI----- 563 (606)
Q Consensus 520 ~~l-------------------------------~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDl----- 563 (606)
..+ .....+.++.|....+.++.||+.+.+++++.|+.+++|+-
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~w 402 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEW 402 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeE
Confidence 000 00111222334455777777777777788888888888762
Q ss_pred ---------------------------------CCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 564 ---------------------------------NTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 564 ---------------------------------rt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
++...+..-. ...++++++|+|+|.+ +|.||.|+.|-
T Consensus 403 t~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~--d~~~ls~v~ysp~G~~-lAvgs~d~~iy 472 (626)
T KOG2106|consen 403 TKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHT--DNEQLSVVRYSPDGAF-LAVGSHDNHIY 472 (626)
T ss_pred EEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEe--cCCceEEEEEcCCCCE-EEEecCCCeEE
Confidence 2211112222 2578999999999995 89999998774
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=106.44 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=126.3
Q ss_pred EEEEcCCCCCEEEEEeCC--CcEEEEECCCCceEEEEeccCC-----CC--CEEEEEEeeCC-CCEEEEEECCCeEEEEe
Q 035500 442 QFEYNPSNPSLMAFGTLD--GEVIVINHENGNVACYIPSIGG-----TN--SVLGLCWLKKY-PSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 442 slafsP~dg~~LaSGs~D--GtVrIWDi~tg~~v~~~~~~gH-----~~--~V~~L~fsp~~-~~~LaSgS~DgtIklWD 511 (606)
.+.-+|.++.++|+||.. ..++|||.+..+.+..-+.... .- .++++.|.+.. ...|++++.-+.+++||
T Consensus 153 ~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YD 232 (412)
T KOG3881|consen 153 DVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYD 232 (412)
T ss_pred eeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEec
Confidence 344677788999999999 8999999998866654432221 12 24578887631 57899999999999999
Q ss_pred CCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE-EcCCCCCCeEEEEEeCCC
Q 035500 512 LNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQL-FTDMHREPINVAKFSHHS 589 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~-l~~gH~~~I~sV~fsP~g 589 (606)
.+++ +.|+..+.. ..+++++..-|+++.+++|..-+.+..+|+|+++.... +. +-++.|+++.-+|.+
T Consensus 233 t~~q---------RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~ 302 (412)
T KOG3881|consen 233 TRHQ---------RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTH 302 (412)
T ss_pred Cccc---------CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC-CccCCcceEEEcCCC
Confidence 9985 678888885 67799999999999999999999999999999998776 55 789999999999999
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
+ ++|+||-|+.+|+
T Consensus 303 ~-~las~GLDRyvRI 316 (412)
T KOG3881|consen 303 P-VLASCGLDRYVRI 316 (412)
T ss_pred c-eEEeeccceeEEE
Confidence 8 6999999999997
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=105.52 Aligned_cols=129 Identities=15% Similarity=0.225 Sum_probs=98.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCC-CCEEEEEEeeCCCCEEEEEE----CCCeEEEEeCCCCCCCccccc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGT-NSVLGLCWLKKYPSKLVAGS----DSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~-~~V~~L~fsp~~~~~LaSgS----~DgtIklWDl~~~~~~~~~l~ 523 (606)
.+..+.+|+.||+||+||+++......+...+|. .+-.+++-.- +.+.+++|+ .|-.+.+||++...
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q------- 154 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ------- 154 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEecccc-------
Confidence 5678999999999999999987777666666666 3444555442 456777774 57789999999852
Q ss_pred CCcceEEee--cCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCce----eEEEcCCCCCCeEEEEEeCCC
Q 035500 524 GNSSVATYY--DFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKP----LQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 524 ~~~~i~t~~--~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~----v~~l~~gH~~~I~sV~fsP~g 589 (606)
+++..+. |++.|+++.|||.. ++++|||.||-|.++|+..... +.++. |...|..+.|...+
T Consensus 155 --q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN--~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 155 --QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN--HGSSIHLIGWLSKK 223 (376)
T ss_pred --chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc--ccceeeeeeeecCC
Confidence 3355554 67779999999997 7999999999999999986522 44444 67889999998766
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-09 Score=115.47 Aligned_cols=150 Identities=13% Similarity=0.154 Sum_probs=117.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++.||| ...+++.++. ..|+|||+..+..+... ......|..++.+| ++..|+.||.|+.+..+|+.-.
T Consensus 569 vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL--~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldls---- 639 (733)
T KOG0650|consen 569 VQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKL--LTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLS---- 639 (733)
T ss_pred eeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHH--hcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccC----
Confidence 67788999 4456666664 56999999876665532 24455688999998 6678999999999999999874
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECC------CC---ceeEEEcCCCCCC----eEEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDIN------TE---KPLQLFTDMHREP----INVAKF 585 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr------t~---k~v~~l~~gH~~~----I~sV~f 585 (606)
..|.+++.+| ..+++|+||+.=.+|++|+.||++.++--+ .. -++..++ ||... |..+.|
T Consensus 640 -----skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~-gH~~~~~~gVLd~~w 713 (733)
T KOG0650|consen 640 -----SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR-GHEKTNDLGVLDTIW 713 (733)
T ss_pred -----cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc-CceeecccceEeecc
Confidence 4577777765 559999999998999999999999988433 22 2356777 78766 999999
Q ss_pred eCCCCeEEEEEeCCCeEEEc
Q 035500 586 SHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc~ 605 (606)
||..+|+ .+++.|++||..
T Consensus 714 HP~qpWL-fsAGAd~tirlf 732 (733)
T KOG0650|consen 714 HPRQPWL-FSAGADGTIRLF 732 (733)
T ss_pred cCCCceE-EecCCCceEEee
Confidence 9999995 577789999964
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.6e-09 Score=105.92 Aligned_cols=155 Identities=9% Similarity=0.052 Sum_probs=119.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEC-CCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINH-ENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi-~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|+.++|+| ..+.|++++.|..-+||.. ..++..++..+..|.++++++.|+| .+++|+.||.-..|.||-++....-
T Consensus 58 vtgvdWap-~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdW 135 (361)
T KOG1523|consen 58 VTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDW 135 (361)
T ss_pred eeEEeecC-CCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccce
Confidence 78899999 8889999999999999998 6677777777778999999999999 7799999999999999988874220
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-----C-------------CceeEEEcCCCCCCe
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDIN-----T-------------EKPLQLFTDMHREPI 580 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr-----t-------------~k~v~~l~~gH~~~I 580 (606)
=-....+.| ..+.|++++|||.+-++++||.|+.++++..- . |+.+.++. ...+.|
T Consensus 136 WVsKhikkP-----irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwv 209 (361)
T KOG1523|consen 136 WVSKHIKKP-----IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWV 209 (361)
T ss_pred ehhhhhCCc-----cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCce
Confidence 000000122 24559999999999999999999999997432 1 12233332 346789
Q ss_pred EEEEEeCCCCeEEEEEeCCCeEE
Q 035500 581 NVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 581 ~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
..+.|+|+|.. ++=.+.|.++-
T Consensus 210 h~v~fs~sG~~-lawv~Hds~v~ 231 (361)
T KOG1523|consen 210 HGVLFSPSGNR-LAWVGHDSTVS 231 (361)
T ss_pred eeeEeCCCCCE-eeEecCCCceE
Confidence 99999999985 77777787764
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.7e-08 Score=99.55 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=112.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC-CCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE-NGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~-tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~~ 517 (606)
|+.+.+.+ +.+++.- .++|+||... +-+....+..........+++-.. +...| +-|-.-|.|+|-|+.....
T Consensus 97 I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~~~ 171 (346)
T KOG2111|consen 97 IKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLASTKP 171 (346)
T ss_pred eeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccceEEEEEhhhcCc
Confidence 66777866 4666654 5679999987 445555555444344444444332 21222 2344678999999988543
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCc-EEEEECCCCceeEEEcCCC-CCCeEEEEEeCCCCeEEEE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKN-VALYDINTEKPLQLFTDMH-REPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~-I~IWDlrt~k~v~~l~~gH-~~~I~sV~fsP~g~~LLaT 595 (606)
..|.....|.+.|.+|+.+.+|..+||+|..|+ |||||.++|+.++++..|- ...|++++|||++.+ +|.
T Consensus 172 -------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~-Lav 243 (346)
T KOG2111|consen 172 -------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW-LAV 243 (346)
T ss_pred -------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE-EEE
Confidence 234555557788999999999999999999988 7899999999999998663 467999999999996 889
Q ss_pred EeCCCeEEEc
Q 035500 596 LHLTTMSRCG 605 (606)
Q Consensus 596 gS~DgtIRc~ 605 (606)
+|..||++++
T Consensus 244 sSdKgTlHiF 253 (346)
T KOG2111|consen 244 SSDKGTLHIF 253 (346)
T ss_pred EcCCCeEEEE
Confidence 9999999864
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.3e-08 Score=105.30 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=114.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
...++.+| +.++++|++.|+.|++|+ ..+...+... ..++.++.|+|. + .++.|+..|...+.|.++
T Consensus 371 lwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhps-g-~va~Gt~~G~w~V~d~e~----- 437 (626)
T KOG2106|consen 371 LWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAECADFHPS-G-VVAVGTATGRWFVLDTET----- 437 (626)
T ss_pred eeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEe---cCceeEeeccCc-c-eEEEeeccceEEEEeccc-----
Confidence 56789999 778999999999999999 4555554432 457899999994 3 899999999999999887
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINT-EKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt-~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+..-....+++.|+++|+|.+||.|+.|+.|+||-+.. +.........|.++|+.+.|++++++ +.+-|.
T Consensus 438 -----~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~-~~~~S~ 511 (626)
T KOG2106|consen 438 -----QDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF-LVSNSG 511 (626)
T ss_pred -----ceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce-EEeccC
Confidence 23344444577899999999999999999999999998874 44444444345689999999999996 667776
Q ss_pred CCeE
Q 035500 599 TTMS 602 (606)
Q Consensus 599 DgtI 602 (606)
|--+
T Consensus 512 d~ei 515 (626)
T KOG2106|consen 512 DYEI 515 (626)
T ss_pred ceEE
Confidence 6543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=113.75 Aligned_cols=155 Identities=16% Similarity=0.217 Sum_probs=118.8
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE------EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC------YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~------~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
..+++++|.|.+++.++.|+.+|.|.-=+-...+... ......|.+.|+.+.++|-....++|++ |.++++|.
T Consensus 348 ~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs 426 (555)
T KOG1587|consen 348 VGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWS 426 (555)
T ss_pred cceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEecc
Confidence 3488999999999999999999998873332211111 1123478899999999997777777777 99999999
Q ss_pred CCCCCCCcccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCeEEEEEeC
Q 035500 512 LNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTE--KPLQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~~I~sV~fsP 587 (606)
-... ..|+..+..+ ..|++++|+|.. ..|+++..||.+.+||+... .++.... .+....+.+.|++
T Consensus 427 ~~~~---------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-~~~~~l~~~~~s~ 496 (555)
T KOG1587|consen 427 EDVI---------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-VCSPALTRVRWSP 496 (555)
T ss_pred ccCC---------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc-ccccccceeecCC
Confidence 7732 3466666654 449999999997 48888888999999999964 5566666 3567788899999
Q ss_pred CCCeEEEEEeCCCeEEE
Q 035500 588 HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIRc 604 (606)
.|+ +++.|...|.++.
T Consensus 497 ~g~-~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 497 NGK-LLAVGDANGTTHI 512 (555)
T ss_pred CCc-EEEEecCCCcEEE
Confidence 888 6899999997764
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=116.59 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=112.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE-EEEeccCCCCC--EEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA-CYIPSIGGTNS--VLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v-~~~~~~gH~~~--V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|+++.-+-..|+.+|+|..||.||+||.+..... .......|... |..+.+.+.+-..|+|||.||.|++||++...
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 5555544456899999999999999997753221 11123477766 99999998665679999999999999999841
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc------CCCCCCeEEEEEeCCCC
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT------DMHREPINVAKFSHHSP 590 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~------~gH~~~I~sV~fsP~g~ 590 (606)
. .+.. .-+..++..+.++++..|++..++|+|+. +.|+||++...+. ..+. ....+.+.|++|||...
T Consensus 1291 ~-e~~~---~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1291 K-ETFL---TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred c-cccc---eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchhH
Confidence 1 1100 01112222345999999999999999999 9999999974332 2221 12346789999999977
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
++|+|+.|.+|-+
T Consensus 1365 -llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1365 -LLAAGSADSTVSI 1377 (1387)
T ss_pred -hhhhccCCceEEE
Confidence 6888999988753
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-08 Score=115.41 Aligned_cols=150 Identities=15% Similarity=0.268 Sum_probs=112.6
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccc
Q 035500 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADA 522 (606)
Q Consensus 443 lafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l 522 (606)
++|..+.|.+ .++|.-..|||||......+..++. +....|+++.-+-..++.+++|-.||.|++||.+....
T Consensus 1171 ~dWqQ~~G~L-l~tGd~r~IRIWDa~~E~~~~diP~-~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~----- 1243 (1387)
T KOG1517|consen 1171 VDWQQQSGHL-LVTGDVRSIRIWDAHKEQVVADIPY-GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP----- 1243 (1387)
T ss_pred eehhhhCCeE-EecCCeeEEEEEecccceeEeeccc-CCCccceeecccccCCceEEEeecCCceEEeecccCCc-----
Confidence 5788766644 4555589999999998777776654 45667888877655678999999999999999998643
Q ss_pred cCCcceEEeecC-CC--eEEEEEccCC-CEEEEEeCCCcEEEEECCCCce--eEEEcCCCC---CCeEEEEEeCCCCeEE
Q 035500 523 RGNSSVATYYDF-EQ--LTSVHVNSTD-DQFLASGYSKNVALYDINTEKP--LQLFTDMHR---EPINVAKFSHHSPLCL 593 (606)
Q Consensus 523 ~~~~~i~t~~~~-~~--V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~--v~~l~~gH~---~~I~sV~fsP~g~~LL 593 (606)
...+..++.| .. |..+++.+.| ..+++|+.||.|++||+|.... ..... .|. +.++++..|++.+ ++
T Consensus 1244 --ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv-~~~~yGs~lTal~VH~hap-ii 1319 (1387)
T KOG1517|consen 1244 --DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV-AHWEYGSALTALTVHEHAP-II 1319 (1387)
T ss_pred --cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee-eccccCccceeeeeccCCC-ee
Confidence 3456666633 33 8999999987 4699999999999999998422 22222 232 3599999999988 78
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
|+|+. +.|++
T Consensus 1320 AsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1320 ASGSA-QLIKI 1329 (1387)
T ss_pred eecCc-ceEEE
Confidence 99987 66654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-09 Score=109.17 Aligned_cols=117 Identities=18% Similarity=0.241 Sum_probs=95.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC--------C------CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE--------N------GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG 505 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~--------t------g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg 505 (606)
|+++.|+| +|+++|+|+++|+|.+|-.. + ...+....+.+|...|+.++|+| ++..+++|+.|.
T Consensus 68 VN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dn 145 (434)
T KOG1009|consen 68 VNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDN 145 (434)
T ss_pred eEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccc
Confidence 67788999 99999999999999999865 2 11223334568999999999999 678999999999
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP 568 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~ 568 (606)
++++||+..+ .....+.. ..-|..++|.|.++++++-|.|...+.+++...+.
T Consensus 146 s~~l~Dv~~G----------~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 146 SVRLWDVHAG----------QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred eEEEEEeccc----------eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 9999999984 34555554 45599999999999999999999888877765443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.2e-08 Score=101.26 Aligned_cols=149 Identities=14% Similarity=0.167 Sum_probs=111.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC----CceE--------EEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCe
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN----GNVA--------CYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGC 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t----g~~v--------~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~Dgt 506 (606)
|+|++|-|..+.-++.|+..| |.||.... ++.+ ..++..|| ..|++++|.+ ++..++++| .|..
T Consensus 143 vtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsss 219 (445)
T KOG2139|consen 143 VTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSS 219 (445)
T ss_pred eeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcce
Confidence 889999998888999999888 89998542 1211 12233355 6899999998 566777776 5779
Q ss_pred EEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEE
Q 035500 507 VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK-PLQLFTDMHREPINVAKF 585 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~f 585 (606)
|.|||..++. ..|+. ..+-+.+.-+.|+|++.++++++-|+..++|...... ..+-.. -++.|....|
T Consensus 220 i~iWdpdtg~--------~~pL~-~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l--gsgrvqtacW 288 (445)
T KOG2139|consen 220 IMIWDPDTGQ--------KIPLI-PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL--GSGRVQTACW 288 (445)
T ss_pred EEEEcCCCCC--------ccccc-ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec--cCCceeeeee
Confidence 9999999853 22332 3455668889999999999999999999999655432 222222 2469999999
Q ss_pred eCCCCeEEEEEeCCCeE
Q 035500 586 SHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtI 602 (606)
+|.|.+++.+++...++
T Consensus 289 spcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 289 SPCGSFLLFACSGSPRL 305 (445)
T ss_pred cCCCCEEEEEEcCCceE
Confidence 99999999888776544
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-09 Score=121.82 Aligned_cols=144 Identities=12% Similarity=0.146 Sum_probs=109.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|..|.. .|.++++|+.|..|+||.++++.+..... ||.+.++.++.+. +...++++|.|..|++|-+..
T Consensus 193 Vyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~r--Ghs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~----- 263 (1113)
T KOG0644|consen 193 VYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCR--GHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD----- 263 (1113)
T ss_pred eeeeeecc-ccceEeecCccceeeeeeccchhhhccCC--CCccccchhccch-hhhhhhhcccCceEEEEecCC-----
Confidence 77888988 99999999999999999999999887655 9999999999986 556799999999999999998
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeE---EEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQ---LFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~---~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
..|+..+.+| ++|++|+|+|-. +++.||++++||.+-...+. -....-..-+-++.|-..+.. ++|
T Consensus 264 -----~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~-f~T 333 (1113)
T KOG0644|consen 264 -----GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR-FLT 333 (1113)
T ss_pred -----CchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc-ccc
Confidence 4577777755 679999999975 88999999999999221111 011011234455555555543 566
Q ss_pred EeCCCeE
Q 035500 596 LHLTTMS 602 (606)
Q Consensus 596 gS~DgtI 602 (606)
|+.|+..
T Consensus 334 gs~d~ea 340 (1113)
T KOG0644|consen 334 GSRDGEA 340 (1113)
T ss_pred ccCCccc
Confidence 6666654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6e-09 Score=112.57 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=98.1
Q ss_pred eccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCC-eEEEEEccCC--CEEEEE
Q 035500 477 PSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQ-LTSVHVNSTD--DQFLAS 552 (606)
Q Consensus 477 ~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~-V~sV~~sp~g--~~LaSg 552 (606)
++.||.+-|.++.|+. ++.+|+|||+|-.+.|||.-. .+++..+. +|.+ |.++.|-|.. .+++||
T Consensus 45 eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFE----------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred hhccccceecceeecC-CCCEEeecCCcceEEeecchh----------cceeeeeecccccceeEEeeeccCCCeEEEec
Confidence 4569999999999997 789999999999999999886 44566555 4444 9999999974 589999
Q ss_pred eCCCcEEEEECCC----------CceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 553 GYSKNVALYDINT----------EKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 553 s~Dg~I~IWDlrt----------~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
..|..|+++|+.. .++.+.+. .|...|..++-.|++++.|-++|+||+||
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtir 173 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIR 173 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCccee
Confidence 9999999999994 23455566 69999999999999999999999999997
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.3e-08 Score=112.76 Aligned_cols=150 Identities=16% Similarity=0.233 Sum_probs=109.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC--Cc---eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN--GN---VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t--g~---~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
+..++.++.++.+++|||.||+||+||... |. .........-.+.+..+...+ ++..+|.++.||.|.+.++..
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCCCeEEEEEccc
Confidence 446778776879999999999999999753 11 111112222456788888887 678899999999999999987
Q ss_pred CCCCc--------ccc---------------cCC---------cceEEe-----------e---cCCCeEEEEEccCCCE
Q 035500 515 IPPKV--------ADA---------------RGN---------SSVATY-----------Y---DFEQLTSVHVNSTDDQ 548 (606)
Q Consensus 515 ~~~~~--------~~l---------------~~~---------~~i~t~-----------~---~~~~V~sV~~sp~g~~ 548 (606)
..... ... .+. ..+..+ + .|+.|++++.+|.+++
T Consensus 1130 ~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~W 1209 (1431)
T KOG1240|consen 1130 YNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNW 1209 (1431)
T ss_pred cccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceE
Confidence 21100 000 000 001111 1 2566999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 549 FLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 549 LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
+++|+..|.+.+||+|-+.++..+..+|..+|+.+..+|..+
T Consensus 1210 lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1210 LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC
Confidence 999999999999999999999988888889999999887655
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=104.21 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=86.1
Q ss_pred EEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 035500 485 VLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDI 563 (606)
Q Consensus 485 V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDl 563 (606)
..++.|++ .+.+||.|..||.|-+||+.+ ...-+.+.. -.+|++++|+++|..++|+|.|..|.+||+
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T----------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDT----------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccc----------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 77899998 779999999999999999998 334445554 467999999999999999999999999999
Q ss_pred CCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 564 NTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 564 rt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..|.+++.+. ..++|+.+.|+|.....++++-
T Consensus 95 ~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~ 126 (405)
T KOG1273|consen 95 LKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATI 126 (405)
T ss_pred cCCCceeEEE--ccCccceeeeccccCCeEEEEE
Confidence 9999999888 4799999999998776555443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.9e-07 Score=96.15 Aligned_cols=156 Identities=11% Similarity=0.113 Sum_probs=102.6
Q ss_pred eeEEEEcCCCCCEEEEEe-CCCcEEEEECC-CCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGT-LDGEVIVINHE-NGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-~DGtVrIWDi~-tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~~ 516 (606)
+..++++| +++++++++ .++.|.+|++. ++.... .......+....++|+| +++.+++++ .++.|.+|++....
T Consensus 37 ~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~-~~~~~~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 37 VQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTF-AAESPLPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEE-eeeecCCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCC
Confidence 56788999 888887664 58899999986 344321 11112334567899998 556666665 48899999997532
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeE-----EEcCCCCCCeEEEEEeCCCC
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEKPLQ-----LFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k~v~-----~l~~gH~~~I~sV~fsP~g~ 590 (606)
.. ...+....+......++++|++++++++ ..++.|.+||+.+...+. ............+.|+|+++
T Consensus 114 ~~------~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~ 187 (330)
T PRK11028 114 IP------VAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQ 187 (330)
T ss_pred CC------CCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCC
Confidence 11 1122333344456788899999877555 466999999998632221 11111224467899999999
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
+++++...+++|++
T Consensus 188 ~lyv~~~~~~~v~v 201 (330)
T PRK11028 188 YAYCVNELNSSVDV 201 (330)
T ss_pred EEEEEecCCCEEEE
Confidence 88777776777764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.5e-09 Score=110.69 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=128.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|..+.|+. .|..+++||.|.+|.+||+..++....+. .||...|..-.|.|.. ...+++++.||.+++=.+...+..
T Consensus 145 VntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 145 VNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred cceeeecc-cCceeeccCccceEEeehhhccCcccccc-cccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 78889998 99999999999999999999988877765 3999999999998854 356999999999998776653221
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEE--cCCCCC---CeEEEEEeCCCCeE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLF--TDMHRE---PINVAKFSHHSPLC 592 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l--~~gH~~---~I~sV~fsP~g~~L 592 (606)
....+...|+++|..++.-|+. ..|.|+|.|+.+.-.|++.+.+...+ ...+.. ..++++.+|...+.
T Consensus 223 ------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 223 ------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 2234556688999999999997 58999999999999999987663222 223444 67899999999999
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+|+|+.|..+|.
T Consensus 297 faVgG~dqf~Rv 308 (559)
T KOG1334|consen 297 FAVGGSDQFARV 308 (559)
T ss_pred cccCChhhhhhh
Confidence 999999988774
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.3e-08 Score=104.56 Aligned_cols=138 Identities=14% Similarity=0.194 Sum_probs=119.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
+...+|-|...|.|.+|+...|+....+..-+|.+.|.++.|+. +-..|.|++.|+.+..|+... ...+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~----------~~~~ 137 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE----------KVII 137 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEeccc----------ceee
Confidence 56688899999999999999999988888779999999999985 667899999999999999998 4556
Q ss_pred EEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC-----CCeEEEEEeCCC
Q 035500 529 ATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH-----SPLCLLLLHLTT 600 (606)
Q Consensus 529 ~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~-----g~~LLaTgS~Dg 600 (606)
+.+... ..+.+++.+|+|..++++| +.|++||+++++.+..|+ ||.++|+++.|--. |.+++.+...+.
T Consensus 138 ~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 138 RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeecccccc
Confidence 677754 4499999999999999988 679999999999999999 89999999999876 777776655443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-09 Score=110.64 Aligned_cols=143 Identities=16% Similarity=0.218 Sum_probs=114.7
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+|..+.|-| .--+||+++..|-++.-|+.+|+.+..+. ...+.+..++-+|.+ ..+-.|...|+|.+|....
T Consensus 211 ~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~--t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~s---- 282 (545)
T KOG1272|consen 211 RVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIR--TGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNS---- 282 (545)
T ss_pred chhhhcccc-hhheeeecccCCceEEEeechhhhhHHHH--ccCCccchhhcCCcc-ceEEEcCCCceEEecCCCC----
Confidence 467788999 66799999999999999999999988665 456678888888854 6788999999999999888
Q ss_pred cccccCCcceE-EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVA-TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~-t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
+.|+. .+.|.++|.+|+++++|.++||+|.|..++|||+|+-..+.+... ..+...++||..| ++|.|-
T Consensus 283 ------kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~ 352 (545)
T KOG1272|consen 283 ------KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSY 352 (545)
T ss_pred ------cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCcccccccccc--ceeeec
Confidence 34444 555788999999999999999999999999999998776665552 3456678887655 455444
Q ss_pred CC
Q 035500 598 LT 599 (606)
Q Consensus 598 ~D 599 (606)
+|
T Consensus 353 G~ 354 (545)
T KOG1272|consen 353 GD 354 (545)
T ss_pred CC
Confidence 33
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-07 Score=102.81 Aligned_cols=145 Identities=12% Similarity=0.149 Sum_probs=92.9
Q ss_pred eeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE-ECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG-SDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg-S~DgtIklWDl~~~ 515 (606)
+.+.+|+| +++.+|.++.+ .+|++||+.+++........+| ...++|+| ++..|+.+ +.+|.+.||.+...
T Consensus 206 v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 206 LMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-DGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred cccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-CCCEEEEEEecCCcEEEEEEECC
Confidence 66788999 99999988754 3699999988765433223344 34689999 55666655 57887777654321
Q ss_pred CCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASG-YSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
. .. ...+. +...+.+..|+|+|+.++.++ .++...||++... .....+. +.. ....|+|+|.++
T Consensus 281 ~--------~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~--~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 281 G--------GT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG--GRG--YSAQISADGKTL 347 (429)
T ss_pred C--------CC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec--CCC--CCccCCCCCCEE
Confidence 1 11 22233 344578899999998766554 5788888877542 2222222 333 457899999975
Q ss_pred EEEEeCCCeEE
Q 035500 593 LLLLHLTTMSR 603 (606)
Q Consensus 593 LaTgS~DgtIR 603 (606)
+++ +.+++++
T Consensus 348 a~~-~~~~i~~ 357 (429)
T PRK01742 348 VMI-NGDNVVK 357 (429)
T ss_pred EEE-cCCCEEE
Confidence 444 4465544
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.9e-08 Score=103.11 Aligned_cols=133 Identities=16% Similarity=0.170 Sum_probs=96.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+|++|.|...+.+.+.+ |.+.|=.+.-... .++...|++-|.++.|++ ..++++|||+|-..++||-...
T Consensus 148 v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k--~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~---- 218 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQG--GHISIKPLAANSK--IIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGA---- 218 (737)
T ss_pred eEEEEECCCCCceEEecC--CeEEEeecccccc--eeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCc----
Confidence 889999995555555444 3355544443222 334569999999999998 4589999999999999998872
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
....+-.|..+|++|+|+|+ ..++.+|. ++++ +..+..+.|..++|+|+|.. ++.|...
T Consensus 219 ------~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ-~a~gt~~ 277 (737)
T KOG1524|consen 219 ------NLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGTQ-ATCGTST 277 (737)
T ss_pred ------ccccCChhccceeeeeeccc-cceeeeee-eeee------------ecCCCccceEEEEEcCCCce-eeccccC
Confidence 22223346788999999999 77777775 3444 44456788999999999996 5666655
Q ss_pred CeE
Q 035500 600 TMS 602 (606)
Q Consensus 600 gtI 602 (606)
|.+
T Consensus 278 G~v 280 (737)
T KOG1524|consen 278 GQL 280 (737)
T ss_pred ceE
Confidence 544
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=95.82 Aligned_cols=139 Identities=10% Similarity=0.059 Sum_probs=110.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
..++.|++ .+..++++-.+|.+.+-+.............+|.-+++-..|+..+++.+++||+|+.+..||++.++
T Consensus 124 ~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--- 199 (339)
T KOG0280|consen 124 ALSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--- 199 (339)
T ss_pred eeEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---
Confidence 45788999 77789999999999977665555555444569999999999998888999999999999999999632
Q ss_pred ccccCCcceE--EeecCCCeEEEEEccC-CCEEEEEeCCCcEEEEECC-CCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 520 ADARGNSSVA--TYYDFEQLTSVHVNST-DDQFLASGYSKNVALYDIN-TEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 520 ~~l~~~~~i~--t~~~~~~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlr-t~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
..+. ...|+..|.+|.-+|. +.++++|++|-.|++||.| .++++..-. -.+.|+.++++|.-.
T Consensus 200 ------~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 200 ------TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIF 266 (339)
T ss_pred ------ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhh
Confidence 2222 2225677999988876 4699999999999999999 577776555 358999999998643
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.9e-08 Score=103.63 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=115.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEecc--CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc----c--
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSI--GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV----A-- 520 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~--gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~----~-- 520 (606)
.+--+..|-.-|.|.+.|....+..+.+... -.+..|+++.|-|.++.+++.+-.+|.+.++|........ .
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 5666778888899999887653322222211 2257899999999888899999999999999875432110 0
Q ss_pred ------------cccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeC
Q 035500 521 ------------DARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 521 ------------~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP 587 (606)
......|+..+. ....|+..+|+|+|.++|+.|.||.+||+|..+.+.+-.++ .--+...|++|+|
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSP 342 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSP 342 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcC
Confidence 001134555555 34679999999999999999999999999999988877776 3558899999999
Q ss_pred CCCeEEEEEeCCCeEE
Q 035500 588 HSPLCLLLLHLTTMSR 603 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIR 603 (606)
||++ ++||++|-.|.
T Consensus 343 DGKy-IvtGGEDDLVt 357 (636)
T KOG2394|consen 343 DGKY-IVTGGEDDLVT 357 (636)
T ss_pred CccE-EEecCCcceEE
Confidence 9996 78999997765
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=109.67 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=116.3
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccc
Q 035500 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADA 522 (606)
Q Consensus 443 lafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l 522 (606)
+.+++ +.=++++|+.-|.|.+|+... ..... ...||.+.+..+.|+. ++++++|+|+|.++++|++.+.+.
T Consensus 139 ~g~s~-~~~~i~~gsv~~~iivW~~~~-dn~p~-~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~----- 209 (967)
T KOG0974|consen 139 IGDSA-EELYIASGSVFGEIIVWKPHE-DNKPI-RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREV----- 209 (967)
T ss_pred EeccC-cEEEEEeccccccEEEEeccc-cCCcc-eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccc-----
Confidence 34566 667999999999999999872 22222 3559999999999996 789999999999999999998532
Q ss_pred cCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC-CCeEEEEEeCCCCeEEEEEeCCCe
Q 035500 523 RGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHR-EPINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 523 ~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~-~~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
....-|.|...|+.+.++|. .++|+|.|-+.++|+.+ ++.+.++. +|. ..|+.++..+... +.+|++.|+.
T Consensus 210 ---~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~-~h~g~~iw~~~~~~~~~-~~vT~g~Ds~ 281 (967)
T KOG0974|consen 210 ---LGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYD-EHSGKGIWKIAVPIGVI-IKVTGGNDST 281 (967)
T ss_pred ---cCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhh-hhhhcceeEEEEcCCce-EEEeeccCcc
Confidence 12345666677999999987 99999999999999665 44444676 565 5789999887765 6899999999
Q ss_pred EEEc
Q 035500 602 SRCG 605 (606)
Q Consensus 602 IRc~ 605 (606)
+|..
T Consensus 282 lk~~ 285 (967)
T KOG0974|consen 282 LKLW 285 (967)
T ss_pred hhhh
Confidence 8864
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.6e-07 Score=98.53 Aligned_cols=142 Identities=12% Similarity=0.081 Sum_probs=98.0
Q ss_pred eeEEEEcCCCCCEEEEEeC---CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe--EEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL---DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC--VRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~---DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt--IklWDl~~ 514 (606)
+.+.+|+| ||+.|+..+. +..|.+||+.+++... + ..+.+.+...+|+|++...+++.+.++. |.+||+.+
T Consensus 204 v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l--~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 279 (435)
T PRK05137 204 VLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQREL-V--GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS 279 (435)
T ss_pred eEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEE-e--ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence 67788999 8998888764 4689999999887643 2 2456677889999954344567777776 66667766
Q ss_pred CCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeC-C--CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 515 IPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGY-S--KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~-D--g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
+. ...+.. ........|+|+|+.++.++. + ..|.+||+..++..+... +...+....|+|+|.
T Consensus 280 ~~-----------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~--~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 280 GT-----------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF--GGGRYSTPVWSPRGD 346 (435)
T ss_pred Cc-----------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec--CCCcccCeEECCCCC
Confidence 31 222332 233567899999998776664 3 368888987765543332 345667789999999
Q ss_pred eEEEEEeC
Q 035500 591 LCLLLLHL 598 (606)
Q Consensus 591 ~LLaTgS~ 598 (606)
+++.+...
T Consensus 347 ~ia~~~~~ 354 (435)
T PRK05137 347 LIAFTKQG 354 (435)
T ss_pred EEEEEEcC
Confidence 87665543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-07 Score=101.76 Aligned_cols=163 Identities=18% Similarity=0.217 Sum_probs=122.7
Q ss_pred cccCCccceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc----CCCC-----CE
Q 035500 415 SSAWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI----GGTN-----SV 485 (606)
Q Consensus 415 ~~~~~~i~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~----gH~~-----~V 485 (606)
.-.+.|...+.+.+ |. +.++.+++ ...+||+|+.||.|..||..+...+..+... .|.+ .|
T Consensus 162 LEqGrfL~P~~~~~-----~~----lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~sv 231 (703)
T KOG2321|consen 162 LEQGRFLNPFETDS-----GE----LNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSV 231 (703)
T ss_pred cccccccccccccc-----cc----ceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcc
Confidence 34566666665321 22 67888999 5569999999999999999887666655432 2333 49
Q ss_pred EEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec--CCCeEEEEEccCC--CEEEEEeCCCcEEEE
Q 035500 486 LGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD--FEQLTSVHVNSTD--DQFLASGYSKNVALY 561 (606)
Q Consensus 486 ~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~--~~~V~sV~~sp~g--~~LaSgs~Dg~I~IW 561 (606)
+++.|.. ++-.++.|+.+|.+.|||++. +.|+..-.| ..+|..+.|.+.+ +.++|.. ...++||
T Consensus 232 Tal~F~d-~gL~~aVGts~G~v~iyDLRa----------~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiW 299 (703)
T KOG2321|consen 232 TALKFRD-DGLHVAVGTSTGSVLIYDLRA----------SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIW 299 (703)
T ss_pred eEEEecC-CceeEEeeccCCcEEEEEccc----------CCceeecccCCccceeeecccccCCCceEEecc-hHHhhhc
Confidence 9999985 577899999999999999999 556666665 4569999998874 4555553 4789999
Q ss_pred ECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 562 DINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 562 Dlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
|-.+|++...++. +..++.+++-|++. ++.+|-.+..+
T Consensus 300 d~~~Gk~~asiEp--t~~lND~C~~p~sG-m~f~Ane~~~m 337 (703)
T KOG2321|consen 300 DECTGKPMASIEP--TSDLNDFCFVPGSG-MFFTANESSKM 337 (703)
T ss_pred ccccCCceeeccc--cCCcCceeeecCCc-eEEEecCCCcc
Confidence 9999999988883 56699999999988 56666665543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.3e-07 Score=93.66 Aligned_cols=160 Identities=10% Similarity=0.033 Sum_probs=101.1
Q ss_pred eeEEEEcCCCCCEEEEEe-CCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGT-LDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~ 516 (606)
+..++++| +++++++++ .++.|.+|++.+ +..........+.....+++++|+ ++++ ++...++.|.+||+....
T Consensus 82 p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~-g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 82 PTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPD-NRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred ceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCC-CCEEEEeeCCCCEEEEEEECCCC
Confidence 55788999 888777776 489999999864 322111111123345678889995 4555 566677999999997632
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCC--Cc--eeEEEcC--C---CCCCeEEEEEe
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY-SKNVALYDINT--EK--PLQLFTD--M---HREPINVAKFS 586 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt--~k--~v~~l~~--g---H~~~I~sV~fs 586 (606)
.. ... ...............+.|+|++++++++.. +++|.+||+.. ++ .+..+.. . +......+.|+
T Consensus 160 ~l-~~~--~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 160 HL-VAQ--EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred cc-ccc--CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence 10 000 000111122334678899999998887765 89999999983 32 2333321 0 11223468899
Q ss_pred CCCCeEEEEEeCCCeEEE
Q 035500 587 HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIRc 604 (606)
|++++++++...+++|.+
T Consensus 237 pdg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 237 PDGRHLYACDRTASLISV 254 (330)
T ss_pred CCCCEEEEecCCCCeEEE
Confidence 999988877666777654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-08 Score=115.22 Aligned_cols=110 Identities=16% Similarity=0.278 Sum_probs=98.0
Q ss_pred ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCC
Q 035500 478 SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSK 556 (606)
Q Consensus 478 ~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg 556 (606)
+.||..+|+|+.|.. .+.++++|+.|.-+|||...+ ..+..+..+|.. |+.++.+...-+++++|.|.
T Consensus 186 LlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et----------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~ 254 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMET----------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDK 254 (1113)
T ss_pred HHhhhhheeeeeecc-ccceEeecCccceeeeeeccc----------hhhhccCCCCccccchhccchhhhhhhhcccCc
Confidence 459999999999996 678999999999999999777 457777887655 99999988888999999999
Q ss_pred cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 557 NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 557 ~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|++|-++.+.++.++. ||++.|++++|+|-. +++.||++|.
T Consensus 255 vIrvWrl~~~~pvsvLr-ghtgavtaiafsP~~-----sss~dgt~~~ 296 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVSVLR-GHTGAVTAIAFSPRA-----SSSDDGTCRI 296 (1113)
T ss_pred eEEEEecCCCchHHHHh-ccccceeeeccCccc-----cCCCCCceEe
Confidence 99999999999999999 899999999999864 6788998875
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-06 Score=94.94 Aligned_cols=144 Identities=16% Similarity=0.061 Sum_probs=94.5
Q ss_pred eeEEEEcCCCCCEEEEEe---CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEE-EEECCC--eEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGT---LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLV-AGSDSG--CVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs---~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~La-SgS~Dg--tIklWDl~ 513 (606)
+.+.+|+| ||+.+|..+ .+..|.+||+.+|+........+ .+...+|+|+ +..|+ +.+.+| .|.+||+.
T Consensus 201 ~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~~SPD-G~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 201 LMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred eeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeEECCC-CCEEEEEEcCCCCcEEEEEECC
Confidence 56788999 999888754 34579999998886544332223 3456899995 45554 445555 58888987
Q ss_pred CCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC-Cc--EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 514 HIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-KN--VALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D-g~--I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
++. ......+...+....|+|+|+.++.++.+ +. |..+|+.+++.. .+. .+........|+|+|.
T Consensus 276 tg~----------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 276 SGQ----------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT-WEGSQNQDADVSSDGK 343 (429)
T ss_pred CCC----------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee-cCCCCccCEEECCCCC
Confidence 632 22222234457889999999988776654 44 445577666543 333 2344566789999999
Q ss_pred eEEEEEeCCC
Q 035500 591 LCLLLLHLTT 600 (606)
Q Consensus 591 ~LLaTgS~Dg 600 (606)
+++.++..++
T Consensus 344 ~Ia~~~~~~g 353 (429)
T PRK03629 344 FMVMVSSNGG 353 (429)
T ss_pred EEEEEEccCC
Confidence 8766665443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-06 Score=96.70 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=112.4
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCC----CEEEEEECCCeEEEEeCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYP----SKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~----~~LaSgS~DgtIklWDl~ 513 (606)
.|+.+++|.. ||+++|.|-.||+|.|-+......+..-.--|..++|++++|+|..+ ..++......|+.++.+.
T Consensus 133 ~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 133 SRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred eeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 4588899998 99999999999999999754333332222235678999999998542 345566666666666655
Q ss_pred CCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 514 HIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
...-. + -+++ .-.-.++++-+.|+++..||.|+.+.+| .|.|-.+-++. .....|++|+..|++++ +
T Consensus 212 G~~Ig------k--~r~L--~FdP~CisYf~NGEy~LiGGsdk~L~~f-TR~GvrLGTvg-~~D~WIWtV~~~PNsQ~-v 278 (1081)
T KOG1538|consen 212 GKQIG------K--DRAL--NFDPCCISYFTNGEYILLGGSDKQLSLF-TRDGVRLGTVG-EQDSWIWTVQAKPNSQY-V 278 (1081)
T ss_pred ceeec------c--cccC--CCCchhheeccCCcEEEEccCCCceEEE-eecCeEEeecc-ccceeEEEEEEccCCce-E
Confidence 42100 0 0001 1124678889999999999999999999 56676666766 36789999999999996 8
Q ss_pred EEEeCCCeEEEc
Q 035500 594 LLLHLTTMSRCG 605 (606)
Q Consensus 594 aTgS~DgtIRc~ 605 (606)
+.|..||+|-|.
T Consensus 279 ~~GCqDGTiACy 290 (1081)
T KOG1538|consen 279 VVGCQDGTIACY 290 (1081)
T ss_pred EEEEccCeeehh
Confidence 899999999884
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=93.99 Aligned_cols=144 Identities=10% Similarity=0.043 Sum_probs=96.4
Q ss_pred eeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC--eEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG--CVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg--tIklWDl~~ 514 (606)
+.+.+|+| +++++|.++.+ ..|++||+.+++..... .+.+.+.+.+|+|++...+++.+.++ .|.+||+.+
T Consensus 192 ~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 192 ILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVA---SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred eecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 55677999 99999987754 48999999988654322 34556778999995433445666555 588888876
Q ss_pred CCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCC-C--cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 515 IPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYS-K--NVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~D-g--~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
.. ...+. +........|+|+|+.++.++.. + .|.+||+.+++... +. .+...+....|+|++.
T Consensus 268 ~~-----------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~-~~~~~~~~~~~spdg~ 334 (417)
T TIGR02800 268 KQ-----------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT-FRGGYNASPSWSPDGD 334 (417)
T ss_pred CC-----------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee-cCCCCccCeEECCCCC
Confidence 32 12222 22334567899999887766543 3 68888888776543 33 2456677889999999
Q ss_pred eEEEEEeCCC
Q 035500 591 LCLLLLHLTT 600 (606)
Q Consensus 591 ~LLaTgS~Dg 600 (606)
+++.++...+
T Consensus 335 ~i~~~~~~~~ 344 (417)
T TIGR02800 335 LIAFVHREGG 344 (417)
T ss_pred EEEEEEccCC
Confidence 8666655443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-06 Score=97.05 Aligned_cols=141 Identities=11% Similarity=0.175 Sum_probs=93.2
Q ss_pred eEEEEcCCCCCEEEEEe-CCCcEEEE--ECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEE-EEECCCeEEEEeCCCCC
Q 035500 441 RQFEYNPSNPSLMAFGT-LDGEVIVI--NHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLV-AGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs-~DGtVrIW--Di~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~La-SgS~DgtIklWDl~~~~ 516 (606)
...+|+| |++.|+.++ .+|.+.|| |..++.... + ..|...+....|+|+ +..++ ++..+|...+|++....
T Consensus 251 ~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~~~-l--t~~~~~~~~~~wSpD-G~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 251 GAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGTPSQ-L--TSGAGNNTEPSWSPD-GQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred CceeECC-CCCEEEEEEecCCcEEEEEEECCCCCeEe-e--ccCCCCcCCEEECCC-CCEEEEEECCCCCceEEEEECCC
Confidence 3578999 998888764 68876665 666665432 2 356667889999995 56554 44568899999876532
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
. ....+.+.. ...+|+|+|+.++.++.++ +..||+.+++...... .+ ....+.|+|+|..+ +.+
T Consensus 326 ~---------~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~i-~~~ 389 (429)
T PRK01742 326 G---------GASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF--LDESPSISPNGIMI-IYS 389 (429)
T ss_pred C---------CeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC--CCCCceECCCCCEE-EEE
Confidence 1 111222222 4578999999998887765 5569999887653333 22 23568899999964 555
Q ss_pred eCCCeE
Q 035500 597 HLTTMS 602 (606)
Q Consensus 597 S~DgtI 602 (606)
+.++.+
T Consensus 390 s~~g~~ 395 (429)
T PRK01742 390 STQGLG 395 (429)
T ss_pred EcCCCc
Confidence 556544
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-08 Score=98.90 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=59.6
Q ss_pred hccccCcccchh----hhcccchhhhhccCCCCCCCcceecccccC--CCCCCCCcccccc-cccchhhh
Q 035500 245 KFRDADEVELPK----YLRTMNLMELSSCLSPNLNGHAEMLDEVND--SNEFPGGAHKQDL-MDANVKLK 307 (606)
Q Consensus 245 ~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~l~~v~L~ 307 (606)
++||||+|||+| ++++||.++||.||++|||||.+|.+.|.+ ||...++|++|.| +++|+.-.
T Consensus 40 ~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred cccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh
Confidence 899999999999 999999999999999999999999999999 8899999999999 88888543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-06 Score=94.87 Aligned_cols=144 Identities=8% Similarity=-0.016 Sum_probs=95.6
Q ss_pred eeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC--eEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG--CVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg--tIklWDl~~ 514 (606)
+.+.+|+| +++.++.++.+ ..|++||+.+++..... .+.+......|+|++...+++.+.+| .|.+||+.+
T Consensus 206 v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~ 281 (433)
T PRK04922 206 ILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS 281 (433)
T ss_pred cccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC
Confidence 55678999 99999987743 46999999887764322 33444567899995444445667666 588899877
Q ss_pred CCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeC-CCc--EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 515 IPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGY-SKN--VALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~-Dg~--I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
+. +..+..+ ......+|+|+|+.++.++. ++. |.++|+.+++..+... +.......+|+|+|.
T Consensus 282 g~-----------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 282 RQ-----------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF--QGNYNARASVSPDGK 348 (433)
T ss_pred CC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec--CCCCccCEEECCCCC
Confidence 32 2222222 33467899999998877664 444 6777777766533322 233445789999999
Q ss_pred eEEEEEeCCC
Q 035500 591 LCLLLLHLTT 600 (606)
Q Consensus 591 ~LLaTgS~Dg 600 (606)
+++++...++
T Consensus 349 ~Ia~~~~~~~ 358 (433)
T PRK04922 349 KIAMVHGSGG 358 (433)
T ss_pred EEEEEECCCC
Confidence 8776655443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5e-07 Score=91.97 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=111.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+...+|+..+++++.+||.||.+.-||++. ++.+.. ...-|+..|.+|.-+|..+.++++|+.|..|++||.+..
T Consensus 168 ~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~-n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm--- 243 (339)
T KOG0280|consen 168 AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH-NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM--- 243 (339)
T ss_pred eeeeecccCCCceEEecCCCceEEEEEecCCcceeee-cceeeecceEEEecCCCCCceEEEeccccceeeeehhcc---
Confidence 667788888999999999999999999983 333332 234788999999999888899999999999999999975
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCc-----eeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEK-----PLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k-----~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.+|+..-...+.|+.+.++|.-. .+..+..-+-.+|-+...+. ...... .|.+-++.-.|+.... +
T Consensus 244 ------~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~-~hdSl~YG~DWd~~~~-~ 315 (339)
T KOG0280|consen 244 ------GKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK-IHDSLCYGGDWDSKDS-F 315 (339)
T ss_pred ------cCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc-cccceeeccccccccc-e
Confidence 34554444457799999999753 44444444556777776542 223334 6888888888865534 5
Q ss_pred EEEEe-CCCeEE
Q 035500 593 LLLLH-LTTMSR 603 (606)
Q Consensus 593 LaTgS-~DgtIR 603 (606)
+|||| .|+.+|
T Consensus 316 lATCsFYDk~~~ 327 (339)
T KOG0280|consen 316 LATCSFYDKKIR 327 (339)
T ss_pred eeeeecccccee
Confidence 77765 566655
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.5e-07 Score=98.73 Aligned_cols=151 Identities=19% Similarity=0.242 Sum_probs=122.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec--------------------------cC----------CCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS--------------------------IG----------GTN 483 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~--------------------------~g----------H~~ 483 (606)
+..+.|+. +|..++.|+.-|-|--+|+.+++....+.. .+ ...
T Consensus 132 PY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~ 210 (545)
T KOG1272|consen 132 PYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHI 210 (545)
T ss_pred CeeeeecC-CccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcC
Confidence 34567887 999999999999999999998877554331 01 124
Q ss_pred CEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 035500 484 SVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYD 562 (606)
Q Consensus 484 ~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWD 562 (606)
.|..+.|.| ..-+|+++|..|.++.-|+..++ .+..+. +.+.+..++.+|-...+-+|...|+|.+|.
T Consensus 211 ~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gk----------lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 211 RVARLEFLP-YHFLLVAASEAGFLKYQDVSTGK----------LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred chhhhcccc-hhheeeecccCCceEEEeechhh----------hhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence 566778888 55778999999999999999853 344444 345678888899999999999999999999
Q ss_pred CCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 563 INTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 563 lrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
....+++..+. .|.++|.+++++++|.+ +||+|.|..+++
T Consensus 280 P~skePLvKiL-cH~g~V~siAv~~~G~Y-MaTtG~Dr~~kI 319 (545)
T KOG1272|consen 280 PNSKEPLVKIL-CHRGPVSSIAVDRGGRY-MATTGLDRKVKI 319 (545)
T ss_pred CCCcchHHHHH-hcCCCcceEEECCCCcE-EeecccccceeE
Confidence 99999987777 69999999999999996 889999998875
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.3e-06 Score=92.00 Aligned_cols=146 Identities=11% Similarity=0.077 Sum_probs=93.2
Q ss_pred eeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
+.+.+|+| +++.++.++.+ ..|.+||+.+++..... ...+.+...+|+|++...+++.+.+|...+|.++...
T Consensus 198 v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 273 (427)
T PRK02889 198 IISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG 273 (427)
T ss_pred cccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 56778999 99999887753 45999999988765432 2334567889999543344577889988888765421
Q ss_pred CCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeC-CCcEEEEEC--CCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 517 PKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGY-SKNVALYDI--NTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDl--rt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
. ....+.. ........|+|+|+.++.++. ++...+|.+ .+++...... +.......+|+|+|.++
T Consensus 274 --------~-~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 274 --------S-GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--TGSYNTSPRISPDGKLL 342 (427)
T ss_pred --------C-CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--CCCCcCceEECCCCCEE
Confidence 1 1222332 223567789999997776654 466666654 4444332222 22334467899999987
Q ss_pred EEEEeCCC
Q 035500 593 LLLLHLTT 600 (606)
Q Consensus 593 LaTgS~Dg 600 (606)
+.++..++
T Consensus 343 a~~s~~~g 350 (427)
T PRK02889 343 AYISRVGG 350 (427)
T ss_pred EEEEccCC
Confidence 66554443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-06 Score=90.64 Aligned_cols=160 Identities=11% Similarity=0.055 Sum_probs=113.6
Q ss_pred ceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE
Q 035500 422 HPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG 501 (606)
Q Consensus 422 ~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg 501 (606)
..+.+.+|.|... +-|++|+. ...++.+|+.+|+|..-|+++.+.+..+.-....+.|+.+..+|. .+.|++.
T Consensus 95 KPI~~~~~~H~SN-----IF~L~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~ 167 (609)
T KOG4227|consen 95 KPIGVMEHPHRSN-----IFSLEFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVV 167 (609)
T ss_pred CCceeccCccccc-----eEEEEEcc-CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC-CceEEEE
Confidence 3344445554333 66899998 667999999999999999999887766544445669999999995 6899999
Q ss_pred ECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCce-eEEEc--CCC-
Q 035500 502 SDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKP-LQLFT--DMH- 576 (606)
Q Consensus 502 S~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~-v~~l~--~gH- 576 (606)
+.+|.|.+||.+..... ..++..-.......++-|||.. .++++.+..+-+.+||+|.... +.... .+-
T Consensus 168 t~~~~V~~~D~Rd~~~~------~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~ 241 (609)
T KOG4227|consen 168 TRAKLVSFIDNRDRQNP------ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLP 241 (609)
T ss_pred ecCceEEEEeccCCCCC------CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCc
Confidence 99999999999984211 1233333345557889999987 5888888889999999997533 21111 011
Q ss_pred --CCCeEEEEEeCCCCeEEE
Q 035500 577 --REPINVAKFSHHSPLCLL 594 (606)
Q Consensus 577 --~~~I~sV~fsP~g~~LLa 594 (606)
...-..+.|+|.|..+++
T Consensus 242 ~~~~~~M~~~~~~~G~Q~ms 261 (609)
T KOG4227|consen 242 QENTEWMGSLWSPSGNQFMS 261 (609)
T ss_pred ccchhhhheeeCCCCCeehh
Confidence 112346778888876554
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-06 Score=87.10 Aligned_cols=149 Identities=12% Similarity=0.111 Sum_probs=98.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.-+.|....-.++.....|+.|.+|++...+..-.+. ....++..++|+|++...|.+...|-.|.+|.+.+.+
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId--eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--- 125 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID--EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--- 125 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEec--cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce---
Confidence 44567887455566677889999999998766554444 5567899999999665678888899999999998732
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeC-C-----------------------------------CcEEEEE
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGY-S-----------------------------------KNVALYD 562 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~-D-----------------------------------g~I~IWD 562 (606)
.. .+.+ +..+..++|||+|++.+..+. | ..+.+||
T Consensus 126 -------~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd 197 (447)
T KOG4497|consen 126 -------GY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD 197 (447)
T ss_pred -------eE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec
Confidence 11 1222 233455666666655544432 1 1223344
Q ss_pred CCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 563 INTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 563 lrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
---.-.+...+ -.-.+..+.|+|.++ +++.|+.|+++|.
T Consensus 198 ~~Leykv~aYe--~~lG~k~v~wsP~~q-flavGsyD~~lrv 236 (447)
T KOG4497|consen 198 NVLEYKVYAYE--RGLGLKFVEWSPCNQ-FLAVGSYDQMLRV 236 (447)
T ss_pred chhhheeeeee--eccceeEEEeccccc-eEEeeccchhhhh
Confidence 32222222222 235788999999988 5899999999986
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.9e-06 Score=88.72 Aligned_cols=110 Identities=15% Similarity=0.269 Sum_probs=88.5
Q ss_pred EEEcCC-CCCEEEEE--eCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe-EEEEeCCCCCCC
Q 035500 443 FEYNPS-NPSLMAFG--TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC-VRLFDLNHIPPK 518 (606)
Q Consensus 443 lafsP~-dg~~LaSG--s~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt-IklWDl~~~~~~ 518 (606)
+|++|+ ...++|-- ...|.|.|||..+-+.+.++. .|++++-+++|++ +|.++||+|+-|+ |||+.+..+
T Consensus 133 ~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G--- 206 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN--AHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEG--- 206 (391)
T ss_pred EeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE--ecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCc---
Confidence 355552 34477653 246999999999888888776 9999999999998 7899999999996 579999874
Q ss_pred cccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 519 VADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
..+..|+.. ..|.+++|+|++.+++++|..++|.++-+..
T Consensus 207 -------~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 207 -------QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred -------cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 345566632 3389999999999999999999999998774
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-07 Score=92.48 Aligned_cols=112 Identities=11% Similarity=0.110 Sum_probs=87.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.++.|.+ .-+.-++|+.+..+..|.+.. +.+.......-..-.|.++..-| ++..+||+|.|+.|++|..++
T Consensus 208 vlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrt--- 282 (323)
T KOG0322|consen 208 VLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRT--- 282 (323)
T ss_pred ceeeeech-hhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEecc---
Confidence 78899988 455667888888899998753 33221111111223578888888 668999999999999999999
Q ss_pred CcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 035500 518 KVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDI 563 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDl 563 (606)
..|+..+.. ...|++++|+|+.+++|++|.|++|.+|++
T Consensus 283 -------l~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 283 -------LNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -------CCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 457777774 456999999999999999999999999986
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.2e-06 Score=95.30 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=111.3
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE--EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC--YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~--~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
.++.+++ .+.+.+....++ +.+|+.+++.... .-....|.-.+++.+++| +++++++|-.||.|.+|.--....
T Consensus 164 ~~I~~~~-~ge~~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~- 239 (792)
T KOG1963|consen 164 KSIVDNN-SGEFKGIVHMCK-IHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSD- 239 (792)
T ss_pred ccEEEcC-CceEEEEEEeee-EEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEecccccc-
Confidence 4566777 776666666554 8899887754211 111235777789999999 789999999999999997544111
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.......+. |+..|++++|+++|.++.|||..+.+-.|.+.+++. +-++ --.++|..+.++|++.. .+...
T Consensus 240 -----~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP-RLgs~I~~i~vS~ds~~-~sl~~ 311 (792)
T KOG1963|consen 240 -----DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP-RLGSPILHIVVSPDSDL-YSLVL 311 (792)
T ss_pred -----ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-cccc-ccCCeeEEEEEcCCCCe-EEEEe
Confidence 022344455 678899999999999999999999999999999983 3334 34689999999999985 66666
Q ss_pred CCCeEE
Q 035500 598 LTTMSR 603 (606)
Q Consensus 598 ~DgtIR 603 (606)
.|..|.
T Consensus 312 ~DNqI~ 317 (792)
T KOG1963|consen 312 EDNQIH 317 (792)
T ss_pred cCceEE
Confidence 676654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=94.51 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=104.4
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q 035500 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVA 520 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~ 520 (606)
+.++++.....++..| ....|+-++++.|+.+..+. ...+.++.+..++ -..+|++|+.||.|-.||.+.... ..
T Consensus 137 RDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~--~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksr-v~ 211 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFE--TDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSR-VG 211 (703)
T ss_pred ccccccCCCccEEEee-cCcceEEEEccccccccccc--cccccceeeeecC-ccceEEecccCceEEEecchhhhh-he
Confidence 4567776455555544 45568999999999988776 3447899999988 457899999999999999987321 11
Q ss_pred cccCCcceEEeec---CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 521 DARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 521 ~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
.+.....+....+ ...|+++.|+-+|=.++.|+.+|.+.|||+|+.+++..-.++..-+|..+.|.+.
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 1110011111111 1239999999888899999999999999999999987777566778999999776
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.4e-06 Score=97.46 Aligned_cols=140 Identities=11% Similarity=0.071 Sum_probs=110.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEE-----EEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccccc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVL-----GLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~-----~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~ 523 (606)
+...++.++.+..+-+||...+...... .+...+. .+.+++ ++-++++|+.-+.|.+|+....
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i---~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~d-------- 165 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKI---QSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHED-------- 165 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhc---CCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEecccc--------
Confidence 4568888999999999998876665433 3332222 111232 3457999999999999999853
Q ss_pred CCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 524 GNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 524 ~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
..+++...|.+.+.++.|+-+|.+++|.|+|+++++|++.+++......++|+.+|+.+.|.|. .++|++.|.+.|
T Consensus 166 -n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcr 241 (967)
T KOG0974|consen 166 -NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCR 241 (967)
T ss_pred -CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEE
Confidence 3455556677889999999999999999999999999999998877555589999999999998 489999999988
Q ss_pred E
Q 035500 604 C 604 (606)
Q Consensus 604 c 604 (606)
+
T Consensus 242 v 242 (967)
T KOG0974|consen 242 V 242 (967)
T ss_pred E
Confidence 6
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.6e-06 Score=95.79 Aligned_cols=115 Identities=15% Similarity=0.116 Sum_probs=92.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
.+++++|| +++++|+|..||+|.+|.--. +.....-.++-|..+|.+++|++ ++.+|+|||..|.+-+|.+.++++
T Consensus 208 ~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~k 285 (792)
T KOG1963|consen 208 ITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGKK 285 (792)
T ss_pred ceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCCc
Confidence 57889999 999999999999999997432 33333333568999999999998 678999999999999999998532
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE 566 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~ 566 (606)
..--+-..+|..+.++|++++.+....|+.|.+-...+.
T Consensus 286 ----------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 286 ----------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred ----------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 111123577999999999999999999999999866543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.6e-07 Score=100.37 Aligned_cols=154 Identities=15% Similarity=0.191 Sum_probs=118.0
Q ss_pred eeEEEEcCC-CCCEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPS-NPSLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~-dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|-.++|+|+ -..+-++......-.||++.. ...+ .+.++||..+|+++.|+|+.+..+++++.|..+..||+++.
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI-ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp- 147 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI-EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP- 147 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccce-EEEEecCccceeccccCCCCCcceeeccccccceeeeccCC-
Confidence 445678762 223444444555567899653 2333 44567999999999999999999999999999999999995
Q ss_pred CCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 517 PKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
..|+..+.. +.....|+|+-....+.+.+..+.|++||.|.| .++..++ +|...|+.+.|+..-...+.
T Consensus 148 --------~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~~~s~~~ 218 (1081)
T KOG0309|consen 148 --------HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRFKYSEIM 218 (1081)
T ss_pred --------CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEec-ccceeeehHHHhhhhhhhhc
Confidence 456666654 566889999988766666666788999999987 4567777 79999999999876655688
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+++.|++|+.
T Consensus 219 s~~~d~tvkf 228 (1081)
T KOG0309|consen 219 SSSNDGTVKF 228 (1081)
T ss_pred ccCCCCceee
Confidence 9999999874
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-05 Score=88.20 Aligned_cols=146 Identities=8% Similarity=-0.012 Sum_probs=92.0
Q ss_pred eeEEEEcCCCCCEEEEEeCC-C--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe--EEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD-G--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC--VRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D-G--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt--IklWDl~~ 514 (606)
+.+..|+| ||+.++..+.+ | .|.+||+.+++....... .+.....+|+|++...+++.+.+|. |.+||+.+
T Consensus 220 ~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t 295 (448)
T PRK04792 220 LMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT 295 (448)
T ss_pred ccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence 45678999 89988876543 3 588899988775432222 2234578999954434456677776 66667765
Q ss_pred CCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeC-C--CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 515 IPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGY-S--KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~-D--g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
+. ...+. +.......+|+|+|+.++..+. + ..|.++|+.+++.......+ ......+|+|+|.
T Consensus 296 g~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~~~~~~~SpDG~ 362 (448)
T PRK04792 296 KA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQNLGGSITPDGR 362 (448)
T ss_pred CC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--CCCcCeeECCCCC
Confidence 31 12222 2234567899999987765553 3 35777788877654432212 2234578999999
Q ss_pred eEEEEEeCCCeE
Q 035500 591 LCLLLLHLTTMS 602 (606)
Q Consensus 591 ~LLaTgS~DgtI 602 (606)
+++.++..++..
T Consensus 363 ~l~~~~~~~g~~ 374 (448)
T PRK04792 363 SMIMVNRTNGKF 374 (448)
T ss_pred EEEEEEecCCce
Confidence 877766655543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.8e-07 Score=98.64 Aligned_cols=226 Identities=15% Similarity=0.193 Sum_probs=160.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc----cccccccccEEecccCCCcccccc-cccccCccc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN----MVGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYL 174 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l 174 (606)
.|||+|-|++..-+.-+....++.=..|..||||.|-|.+.+ .+..|++|+.|||+ .|++.++.+ .--..+|.|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls-~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLS-SNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccc-cccccCCccccchhhhhhh
Confidence 489999999977777776678888889999999999988865 56789999999999 999988854 233489999
Q ss_pred cEEEcccccccchhhhhHHhhc-CCchhhhhhceecccCCCCCcccCCcccccCCCCCC-cCCCchhhHHHhhccccC--
Q 035500 175 MCLSMCETRIVNLWTTTAAISK-LPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADD-RVKDNEDQIVCKKFRDAD-- 250 (606)
Q Consensus 175 ~~l~~~~~~~~~l~~~~~~l~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 250 (606)
++|++..+.++ |.++.-+-+ +|+|.+|-++. |+ -+..+..-.+-++++..|
T Consensus 200 K~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~-----------------------N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 200 KQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEA-----------------------NEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred heEEeccCCCC--HHHHHHHHHhCCcHHHhhhhc-----------------------ccccceecchhhhhhHHhhcccc
Confidence 99999999999 999988766 99999998554 11 011111111223444433
Q ss_pred ---cccchh--hhcccchhhhhccCCCCCCCcceecccccC--------CCCCCCCcccccc-c---ccch----hhhhh
Q 035500 251 ---EVELPK--YLRTMNLMELSSCLSPNLNGHAEMLDEVND--------SNEFPGGAHKQDL-M---DANV----KLKKY 309 (606)
Q Consensus 251 ---~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~---l~~v----~L~~~ 309 (606)
=|||.+ +.+.||-|+ .|.+..+|+--|.+-=.. |.+..+....|++ + +..+ +|+ +
T Consensus 255 ~N~li~~~~~~~~~~l~~L~---~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk-~ 330 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVGTLPGLN---QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK-H 330 (505)
T ss_pred CCcccccccccccccccchh---hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh-h
Confidence 244442 444444444 444666777666543331 5577777777776 3 3333 566 7
Q ss_pred hccCCCCcccchh-hHHHHHhhCCCceeccCCCCCcchHHHHHHHhh
Q 035500 310 ISHHPSPICFEKH-YREYMIASLPQLEVLDNLPIGRLDREIAKSVFA 355 (606)
Q Consensus 310 l~~~~npi~~~~~-YReyvI~~Lp~LkvLD~~~i~~~eRe~A~~ifS 355 (606)
+.-..|++..++. -+.-|||++++|..|....+...+|-.|.-.|-
T Consensus 331 l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~ 377 (505)
T KOG3207|consen 331 LRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRDAELYYL 377 (505)
T ss_pred hhcccccccccccceeEEeeeehhhhhhhcccccChHHhhhhhhhHH
Confidence 7777888885554 345599999999999999999999988875544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-05 Score=87.17 Aligned_cols=138 Identities=16% Similarity=0.236 Sum_probs=89.3
Q ss_pred eEEEEcCCCCCEEEEE-eCCC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEe--CCC
Q 035500 441 RQFEYNPSNPSLMAFG-TLDG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFD--LNH 514 (606)
Q Consensus 441 ~slafsP~dg~~LaSG-s~DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWD--l~~ 514 (606)
...+|+| ||+.|+.. +.+| .|++||+.+++.... ..+...+....|+| +++.|+.++. ++...+|. +.+
T Consensus 246 ~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~l---t~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 246 GAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQV---TDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred CCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEc---cCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCC
Confidence 3568999 88888765 4455 588999988776542 24445678899999 5566665554 45556664 443
Q ss_pred CCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 515 IPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
+. ...+. .........|+|+|+.++..+.+ ..|.+||+.+++.. .+...+ ......|+|+|.
T Consensus 321 g~-----------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~p~~SpDG~ 386 (429)
T PRK03629 321 GA-----------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTF--LDETPSIAPNGT 386 (429)
T ss_pred CC-----------eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCC--CCCCceECCCCC
Confidence 21 12222 22335678899999988776543 45889999888653 333222 234678999999
Q ss_pred eEEEEEe
Q 035500 591 LCLLLLH 597 (606)
Q Consensus 591 ~LLaTgS 597 (606)
+++.++.
T Consensus 387 ~i~~~s~ 393 (429)
T PRK03629 387 MVIYSSS 393 (429)
T ss_pred EEEEEEc
Confidence 7655544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-05 Score=87.62 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=91.0
Q ss_pred eEEEEcCCCCCEEE-EEeCCC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCe--EEEEeCCC
Q 035500 441 RQFEYNPSNPSLMA-FGTLDG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGC--VRLFDLNH 514 (606)
Q Consensus 441 ~slafsP~dg~~La-SGs~DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~Dgt--IklWDl~~ 514 (606)
.+.+|+| +++.++ +.+.+| .|++||+.++.... ...|.......+|+| ++..++.++ .+|. |.++|+..
T Consensus 251 ~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~---lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 251 GAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQLTR---LTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred cCceECC-CCCEEEEEEeCCCCceEEEEECCCCCeEE---CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence 4578999 887765 455555 59999998877543 224555567789999 556666555 4555 44455544
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
+. ....++. .......+|+|+|+.++..+.+ ..|.+||+.+++.. .+. +........|+|+|.+
T Consensus 326 g~---------~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~ 392 (433)
T PRK04922 326 GS---------AERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSM 392 (433)
T ss_pred CC---------eEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCE
Confidence 21 1111222 2234568999999988776543 26999999888764 333 2234456799999998
Q ss_pred EEEEEeCCC
Q 035500 592 CLLLLHLTT 600 (606)
Q Consensus 592 LLaTgS~Dg 600 (606)
++.++...+
T Consensus 393 i~~~s~~~g 401 (433)
T PRK04922 393 VLYATREGG 401 (433)
T ss_pred EEEEEecCC
Confidence 776655433
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.1e-05 Score=84.98 Aligned_cols=143 Identities=11% Similarity=0.071 Sum_probs=92.9
Q ss_pred eeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCC--eEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSG--CVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~Dg--tIklWDl~ 513 (606)
+.+..|+| +|+.|+..+.+ ..|.+||+.+++..... ...+.+....|+|+ +..+ ++.+.+| .|.+||+.
T Consensus 201 ~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---~~~g~~~~~~~SpD-G~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 201 ILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---NFEGLNGAPAWSPD-GSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred eeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---CCCCCcCCeEECCC-CCEEEEEEccCCCceEEEEECC
Confidence 56778999 89988877644 36899999988765422 22334557899995 4555 4666666 57777887
Q ss_pred CCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeC-C--CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGY-S--KNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~-D--g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
++. ...+. +........|+|+|+.++..+. + ..|.+||+.+++..+....+ .......|+|+|
T Consensus 276 ~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg 342 (430)
T PRK00178 276 SRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG--NYNARPRLSADG 342 (430)
T ss_pred CCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CCccceEECCCC
Confidence 632 11222 2233566789999987665553 3 35778888887754332212 233457899999
Q ss_pred CeEEEEEeCCC
Q 035500 590 PLCLLLLHLTT 600 (606)
Q Consensus 590 ~~LLaTgS~Dg 600 (606)
.+++.+...++
T Consensus 343 ~~i~~~~~~~~ 353 (430)
T PRK00178 343 KTLVMVHRQDG 353 (430)
T ss_pred CEEEEEEccCC
Confidence 98777665554
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.7e-06 Score=87.06 Aligned_cols=135 Identities=15% Similarity=0.116 Sum_probs=105.3
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCC-ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENG-NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg-~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
++.+.|-| .....+|+++.-|.||+||...+ +++..+.+. ..+++++.-.| .++.+++|-.-|.+..+|.+.++
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~--E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~k- 280 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL--ENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGK- 280 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc--cCcceeeeecC-CCcEEEEecccchhheecccCce-
Confidence 55667876 12789999999999999998864 566666643 45689999888 67899999999999999999852
Q ss_pred CcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 518 KVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
-....+++ .+.|.+|+.||.+.+++++|-|+.|||+|+.+.+++...- -...++++-+.++
T Consensus 281 --------l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY--vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 281 --------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY--VKSRLTFILLRDD 342 (412)
T ss_pred --------eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh--hhccccEEEecCC
Confidence 23334554 5679999999999999999999999999999976654333 2456777777554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-05 Score=87.24 Aligned_cols=146 Identities=10% Similarity=0.051 Sum_probs=93.1
Q ss_pred eeEEEEcCCCCCEEE-EEeCCCcEEEEEC--CCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMA-FGTLDGEVIVINH--ENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~La-SGs~DGtVrIWDi--~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~ 515 (606)
+...+|+| |++.++ +.+.+|...||.+ .++.. .. +..|.+......|+| ++..++..+ .+|...+|.+...
T Consensus 242 ~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~--lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 242 NSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSGL-RR--LTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred ccceEECC-CCCEEEEEEccCCCceEEEEECCCCCc-EE--CCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECC
Confidence 44678999 888776 5677888777764 44443 22 224555566788999 556665544 4577788876532
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC---cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK---NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg---~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.. .....++.+ ......+|+|+|++++..+.++ .|.+||+.+++...... + .......|+|+|..+
T Consensus 317 ~g-------~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~--~~~~~p~~spdg~~l 385 (427)
T PRK02889 317 GG-------AAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T--TRDESPSFAPNGRYI 385 (427)
T ss_pred CC-------ceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C--CCccCceECCCCCEE
Confidence 11 111112222 2244678999999988776554 69999999887543322 2 334678999999987
Q ss_pred EEEEeCCCe
Q 035500 593 LLLLHLTTM 601 (606)
Q Consensus 593 LaTgS~Dgt 601 (606)
+.++..++.
T Consensus 386 ~~~~~~~g~ 394 (427)
T PRK02889 386 LYATQQGGR 394 (427)
T ss_pred EEEEecCCC
Confidence 777655543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-06 Score=88.81 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=104.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|-+++|+- .++++..|..+|.|.+.|++.+.. ........|.++|+++......+.+|.+.+.+|+|++||.+..+.
T Consensus 255 VfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 255 VFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred HHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc
Confidence 55667776 678999999999999999876411 111122378999999987654667899999999999999998542
Q ss_pred CcccccCCcceEEeecCCC---eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC---CCCCeEEEEEe
Q 035500 518 KVADARGNSSVATYYDFEQ---LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM---HREPINVAKFS 586 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~---V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g---H~~~I~sV~fs 586 (606)
+..+.++.+|.. -.-+..++....++++|+|...+||.++.|..+.+++.. ....+.+++|.
T Consensus 334 -------~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 334 -------KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred -------ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 445888887633 233456777789999999999999999999998887742 12356677765
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.3e-05 Score=78.17 Aligned_cols=111 Identities=14% Similarity=0.212 Sum_probs=85.5
Q ss_pred EcC-CCCCEEEE-EeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe-EEEEeCCCCCCCccc
Q 035500 445 YNP-SNPSLMAF-GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC-VRLFDLNHIPPKVAD 521 (606)
Q Consensus 445 fsP-~dg~~LaS-Gs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt-IklWDl~~~~~~~~~ 521 (606)
..| .+..+||. |-.-|.|+|-|+...+........+|.+.|.+++.+. .+.++||+|..|| |||||..++
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g------ 214 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDG------ 214 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCC------
Confidence 444 23345554 5567999999987655532223349999999999996 6789999999996 689999984
Q ss_pred ccCCcceEEeec---CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 035500 522 ARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE 566 (606)
Q Consensus 522 l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~ 566 (606)
..+..++. +..|.+|+|+|++.++|++|+-|++.|+.++..
T Consensus 215 ----~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 215 ----TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ----cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 45666653 445999999999999999999999999988853
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.7e-06 Score=88.33 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=82.0
Q ss_pred EEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 486 LGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 486 ~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
..++|+. ++..+++|+.||++|+|+..... .-.....|+..|.+++|+|+|+++++-|.| ..++||.++
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~---------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSML---------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcch---------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 6788887 67899999999999999977642 122233478889999999999999999999 999999998
Q ss_pred CceeEEEc----------------------------CC------------C-------------CCCeEEEEEeCCCCeE
Q 035500 566 EKPLQLFT----------------------------DM------------H-------------REPINVAKFSHHSPLC 592 (606)
Q Consensus 566 ~k~v~~l~----------------------------~g------------H-------------~~~I~sV~fsP~g~~L 592 (606)
+..+.... .. | ...|.+++.+++|+ +
T Consensus 217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f 295 (398)
T KOG0771|consen 217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-F 295 (398)
T ss_pred CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-E
Confidence 82211100 00 1 23688999999998 4
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+|.|+.||.|-+
T Consensus 296 ~AlGT~dGsVai 307 (398)
T KOG0771|consen 296 LALGTMDGSVAI 307 (398)
T ss_pred EEEeccCCcEEE
Confidence 889999998765
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.7e-05 Score=83.96 Aligned_cols=125 Identities=12% Similarity=0.071 Sum_probs=85.8
Q ss_pred CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC---CCeEEEEeCCCCCCCcccccCCcceEEeecCCC
Q 035500 460 GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD---SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQ 536 (606)
Q Consensus 460 GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~---DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~ 536 (606)
..|.+||...+.. ..+. .|...+...+|+| ++..|+..+. +..|.+||+.++. ....-.....
T Consensus 182 ~~l~~~d~dg~~~-~~lt--~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~----------~~~l~~~~g~ 247 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLT--DGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQ----------RELVGNFPGM 247 (435)
T ss_pred eEEEEECCCCCCc-EEEe--cCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCc----------EEEeecCCCc
Confidence 4788899864443 3333 6778899999999 5677776653 4689999998742 1111123445
Q ss_pred eEEEEEccCCCEEE-EEeCCCc--EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 537 LTSVHVNSTDDQFL-ASGYSKN--VALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 537 V~sV~~sp~g~~La-Sgs~Dg~--I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
+...+|+|+|+.++ +.+.++. |.+||+.+++.. .+. .+........|+|+|.+++.++..++
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g 312 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLT-DSPAIDTSPSYSPDGSQIVFESDRSG 312 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-Ecc-CCCCccCceeEcCCCCEEEEEECCCC
Confidence 67889999998664 5565554 777899887654 344 35566778999999998766654444
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.4e-06 Score=90.74 Aligned_cols=163 Identities=13% Similarity=0.188 Sum_probs=123.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCC----CEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTN----SVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~----~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
|.-++.-|.++.-+.+++.|+.|.=+|+.++.....+....++. ..+.++..|.+...+++|+.|..+++||.+..
T Consensus 235 vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~ 314 (559)
T KOG1334|consen 235 VHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI 314 (559)
T ss_pred cceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence 66778888888999999999999999998877665554444433 36688899988889999999999999998753
Q ss_pred CCCc-cc-----------------c-----------------------------cCC---------cceE-EeecC---C
Q 035500 516 PPKV-AD-----------------A-----------------------------RGN---------SSVA-TYYDF---E 535 (606)
Q Consensus 516 ~~~~-~~-----------------l-----------------------------~~~---------~~i~-t~~~~---~ 535 (606)
.... +. + .+. ..+. .+++| .
T Consensus 315 ~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~ 394 (559)
T KOG1334|consen 315 DKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSR 394 (559)
T ss_pred hhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccc
Confidence 2210 00 0 000 1111 24443 1
Q ss_pred CeEEEEE-ccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 536 QLTSVHV-NSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 536 ~V~sV~~-sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|..|-| -|..++++|||+-|.|.|||-.+++.++.++ |-..-|+|+.=+|.-+ +||++|-|.-||+
T Consensus 395 TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me-gDr~VVNCLEpHP~~P-vLAsSGid~DVKI 462 (559)
T KOG1334|consen 395 TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME-GDRHVVNCLEPHPHLP-VLASSGIDHDVKI 462 (559)
T ss_pred ccceeeeccCccceEEecCccceEEEEecchhHHHHHhh-cccceEeccCCCCCCc-hhhccCCccceee
Confidence 2666654 5778899999999999999999999999888 6666999999999999 7999999998875
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-05 Score=83.42 Aligned_cols=152 Identities=12% Similarity=0.074 Sum_probs=104.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-EEEEeccCCCCCEEEEEEeeCCCC--EEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-ACYIPSIGGTNSVLGLCWLKKYPS--KLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~~~gH~~~V~~L~fsp~~~~--~LaSgS~DgtIklWDl~~~~ 516 (606)
+.-+..+| ++.++|.+..+....+++...... ........-...-+.+.|...... ..-.+++...+.+|....+
T Consensus 65 ~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 65 PALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred ccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 33445777 899999999999988888654332 111111122223344444432222 2233455666666666542
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
.+...+.|-+-+.+|+|+|++++++++..|..|++--....-.+..|..||+.-|..++.-++. .+++|
T Consensus 143 ---------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~ 211 (390)
T KOG3914|consen 143 ---------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSG 211 (390)
T ss_pred ---------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeec
Confidence 2333445556699999999999999999999999977776677788888999999999998765 48899
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
|+|+++|.
T Consensus 212 sGD~tlr~ 219 (390)
T KOG3914|consen 212 SGDKTLRL 219 (390)
T ss_pred CCCCcEEE
Confidence 99999984
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-06 Score=67.98 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=45.8
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccc
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRI 184 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 184 (606)
++|+|++|+|+.+. .+..+++|++|+|. +|.|+.++.+.|..||+|+.|.|.+|+|
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46888888888887 56778888888888 8888888888888888888888888865
|
... |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0001 Score=79.83 Aligned_cols=131 Identities=20% Similarity=0.224 Sum_probs=91.8
Q ss_pred CEE-EEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 451 SLM-AFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 451 ~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+++ ++-..+|.|.|.|..+.+.+..+.. + ...-..+.|+| ++++++.++.||.|.++|+.+ .+.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~-~-~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~----------~~~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPT-G-GAPHAGLKFSP-DGRYLYVANRDGTVSVIDLAT----------GKVVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE--S-TTEEEEEE-TT--SSEEEEEETTSEEEEEETTS----------SSEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcC-C-CCceeEEEecC-CCCEEEEEcCCCeEEEEECCc----------ccEEE
Confidence 344 4556789999999999999888763 2 22234567887 678899999999999999998 45677
Q ss_pred EeecCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeEEEcCC------CCCCeEEEEEeCCCCeEEE
Q 035500 530 TYYDFEQLTSVHVNSTDDQFLASG-YSKNVALYDINTEKPLQLFTDM------HREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 530 t~~~~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k~v~~l~~g------H~~~I~sV~fsP~g~~LLa 594 (606)
+........+++++++|++++++. ..+.+.++|.++.++++.++.+ ...++..+..+|.++..++
T Consensus 73 ~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 73 TIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp EEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred EEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence 777777788999999999888776 5799999999999998887632 2346778888888875333
|
... |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.1e-07 Score=100.12 Aligned_cols=138 Identities=22% Similarity=0.238 Sum_probs=100.7
Q ss_pred cceEEEccCcccc---chHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCcccc
Q 035500 101 KLRVVDLSNITLR---NDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLM 175 (606)
Q Consensus 101 ~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~ 175 (606)
+|+.+||+.|... .|.|. .+| .=++|||++|+|..|. -+-.+.+|++|+|. -|+|+.|+|+-|-||.+|+
T Consensus 294 ~L~~L~lS~NaI~rih~d~Ws-ftq---kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs-~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWS-FTQ---KLKELDLSSNRITRLDEGSFRVLSQLEELNLS-HNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred hhhhhccchhhhheeecchhh-hcc---cceeEeccccccccCChhHHHHHHHhhhhccc-ccchHHHHhhHHHHhhhhh
Confidence 5667777765322 22221 111 2367999999999997 56689999999999 9999999999999999999
Q ss_pred EEEcccccccchhhhhHHh-hcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccc
Q 035500 176 CLSMCETRIVNLWTTTAAI-SKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVEL 254 (606)
Q Consensus 176 ~l~~~~~~~~~l~~~~~~l-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (606)
+|.+-.|+++---.+.|+. ..||+|++|+|++=. =-++...+|.-
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq----------------------------lk~I~krAfsg------ 414 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ----------------------------LKSIPKRAFSG------ 414 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCce----------------------------eeecchhhhcc------
Confidence 9999999998444455554 459999999988611 01111223332
Q ss_pred hhhhcccchhhhhccCCCCCCCcceecccccC
Q 035500 255 PKYLRTMNLMELSSCLSPNLNGHAEMLDEVND 286 (606)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 286 (606)
++-|..|++++|-|+-|+++-=+
T Consensus 415 ---------l~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 415 ---------LEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred ---------CcccceecCCCCcceeecccccc
Confidence 36788899999999999976544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=82.30 Aligned_cols=140 Identities=13% Similarity=0.185 Sum_probs=102.3
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccc
Q 035500 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADA 522 (606)
Q Consensus 443 lafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l 522 (606)
..||| +|+++|+.+.- .+-|-|.++-+....+.. -+.|.-+.|..+....+.....|+.|.+|++...
T Consensus 14 c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~qlf~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp------- 81 (447)
T KOG4497|consen 14 CSFSP-CGNYIASLSRY-RLVIRDSETLQLHQLFLC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP------- 81 (447)
T ss_pred eeECC-CCCeeeeeeee-EEEEeccchhhHHHHHHH---HHHhhheeeeccceeeeeeeeccceEEEEEeecc-------
Confidence 35999 99999999876 678888887665544332 3457788998766566777889999999999873
Q ss_pred cCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 523 RGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 523 ~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.-....+ +..++.+++|+|+|+ ++.++.-|-.|.+|.+.+.+....-. -+..+..++|+|+|++.....-.|
T Consensus 82 ---ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 82 ---EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ---eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeeccc
Confidence 2223333 456699999999995 66677778999999999877654322 234568899999999744333333
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.6e-05 Score=82.38 Aligned_cols=146 Identities=15% Similarity=0.146 Sum_probs=89.1
Q ss_pred EEEEcCCCCCEEEEEeC-----CCcEEEEECCCC---ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeC
Q 035500 442 QFEYNPSNPSLMAFGTL-----DGEVIVINHENG---NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDL 512 (606)
Q Consensus 442 slafsP~dg~~LaSGs~-----DGtVrIWDi~tg---~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl 512 (606)
..+|+| ||+.||..+. |..+.+|+...+ ....... ++.+.....+|+| ++..|+..+ .+|...+|.+
T Consensus 235 ~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~--~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 235 MPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN--EAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred ceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec--CCCCCcCCeEECC-CCCEEEEEECCCCCceEEEE
Confidence 457999 9988887553 223444776653 2222211 2223346789999 456555444 5776667754
Q ss_pred CCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 513 NHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
..... ......+. +...+....|+|+|+.++..+.+ ..|.+||+.+++...... ....+....|+|+
T Consensus 311 ~~~~~-------g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpD 381 (428)
T PRK01029 311 QIDPE-------GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAID 381 (428)
T ss_pred ECccc-------ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCC
Confidence 32110 01122222 23456788999999988766543 469999999887644332 2345678999999
Q ss_pred CCeEEEEEeCCC
Q 035500 589 SPLCLLLLHLTT 600 (606)
Q Consensus 589 g~~LLaTgS~Dg 600 (606)
|.+++.++..++
T Consensus 382 G~~L~f~~~~~g 393 (428)
T PRK01029 382 SLHLVYSAGNSN 393 (428)
T ss_pred CCEEEEEECCCC
Confidence 998777665443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0001 Score=80.05 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=92.4
Q ss_pred eeEEEEcCCCCCEEE-EEeCCC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CC--eEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMA-FGTLDG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SG--CVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~La-SGs~DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-Dg--tIklWDl~ 513 (606)
+.+.+|+| +++.++ +.+.+| .|++||+.++..... ..+........|+| ++..++.++. ++ .|.+||+.
T Consensus 236 ~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 236 NGAPAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQLTRL---TNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred ccceEECC-CCCEEEEEECCCCCccEEEEECCCCCEEEC---CCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECC
Confidence 44678999 887665 444444 588899887765432 24444455678998 5566665543 44 46666766
Q ss_pred CCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCC---cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSK---NVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg---~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
+. . ...+. +...+....|+|+|++++.++.++ .|.+||+.++... .+.. ........|+|++
T Consensus 311 ~~----------~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~--~~~~~~p~~spdg 376 (417)
T TIGR02800 311 GG----------E-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD--TGLDESPSFAPNG 376 (417)
T ss_pred CC----------C-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC--CCCCCCceECCCC
Confidence 52 1 12222 334467788999999888887765 7999999886543 3331 1233456899999
Q ss_pred CeEEEEEeCCCe
Q 035500 590 PLCLLLLHLTTM 601 (606)
Q Consensus 590 ~~LLaTgS~Dgt 601 (606)
.+++++...++.
T Consensus 377 ~~l~~~~~~~~~ 388 (417)
T TIGR02800 377 RMILYATTRGGR 388 (417)
T ss_pred CEEEEEEeCCCc
Confidence 987776665543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=90.52 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=114.8
Q ss_pred cCCccceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCC
Q 035500 417 AWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPS 496 (606)
Q Consensus 417 ~~~~i~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~ 496 (606)
+.+-...+++..|+|..+ ++.+.|+|+.+..+|+++.|-.|..||+.+-..-. .....-......++|+..++.
T Consensus 99 A~ss~~aIef~lhghsra-----itd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~-ys~~~w~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRA-----ITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF-YSTSSWRSAASQVKWNYKDPN 172 (1081)
T ss_pred hcCCccceEEEEecCccc-----eeccccCCCCCcceeeccccccceeeeccCCCcce-eeeecccccCceeeecccCcc
Confidence 344445566666776555 56788999999999999999999999998633221 122244456788999976666
Q ss_pred EEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCce--eEEE
Q 035500 497 KLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKP--LQLF 572 (606)
Q Consensus 497 ~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~--v~~l 572 (606)
.++ .+....|.+||.+.+ ..|+.+++++ ..|+++.|+... ..+.+++.||+|++||...... -+..
T Consensus 173 vla-sshg~~i~vwd~r~g---------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v 242 (1081)
T KOG0309|consen 173 VLA-SSHGNDIFVWDLRKG---------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV 242 (1081)
T ss_pred hhh-hccCCceEEEeccCC---------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec
Confidence 554 456678999999996 4577777765 448999998764 5888999999999999986543 3333
Q ss_pred cCCCCCCeEEEEEeCCCCe
Q 035500 573 TDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g~~ 591 (606)
. ...+|+--++-|-|.-
T Consensus 243 t--t~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 243 T--TNFPIWRGRYLPFGEG 259 (1081)
T ss_pred c--ccCcceeccccccCce
Confidence 3 4677888888887754
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-05 Score=83.51 Aligned_cols=123 Identities=15% Similarity=0.268 Sum_probs=93.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+++++|.| ...++.+|..|..|.+||+.-++-+ .....+|.+.|..++..+ -...+.|++.||.|-+|+++......
T Consensus 200 ~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~-~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~~r~et 276 (404)
T KOG1409|consen 200 VTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGT-AYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNVKRVET 276 (404)
T ss_pred eEEEEEcC-CCcEEEeccccCceEEEeccCCcce-eeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEeccceeecC
Confidence 88999999 7779999999999999999754444 345669999999998876 45789999999999999987542211
Q ss_pred ccc------------------------------------------------------------------------cCCcc
Q 035500 520 ADA------------------------------------------------------------------------RGNSS 527 (606)
Q Consensus 520 ~~l------------------------------------------------------------------------~~~~~ 527 (606)
..+ ....|
T Consensus 277 pewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~ 356 (404)
T KOG1409|consen 277 PEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTP 356 (404)
T ss_pred ccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCc
Confidence 000 01123
Q ss_pred eEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 528 VATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 528 i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
+.++. .+..|+.+++..+-.+++|+|.|+.|+|||++.
T Consensus 357 LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 357 LAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 33333 356688998877778999999999999999874
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.8e-05 Score=79.94 Aligned_cols=162 Identities=16% Similarity=0.250 Sum_probs=111.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-----eEEEEec----------cCCCCCEEEEEEeeC-CCCEEEEEEC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-----VACYIPS----------IGGTNSVLGLCWLKK-YPSKLVAGSD 503 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-----~v~~~~~----------~gH~~~V~~L~fsp~-~~~~LaSgS~ 503 (606)
+.++.|.- .|.+||+|..+|+|-+|.-+... ....++. ..-...|..+.|.++ +...++..+.
T Consensus 28 is~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 28 ISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred eeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 67888998 99999999999999999754322 1122210 012356889999764 3446777889
Q ss_pred CCeEEEEeCCCCCCCc--------------ccc-----------cCCcceEEeec-C-CCeEEEEEccCCCEEEEEeCCC
Q 035500 504 SGCVRLFDLNHIPPKV--------------ADA-----------RGNSSVATYYD-F-EQLTSVHVNSTDDQFLASGYSK 556 (606)
Q Consensus 504 DgtIklWDl~~~~~~~--------------~~l-----------~~~~~i~t~~~-~-~~V~sV~~sp~g~~LaSgs~Dg 556 (606)
|.+|++|.++...... +.+ ....|.+.+.+ | .-|++|+++.+++.++|+. |=
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dL 185 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DL 185 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ce
Confidence 9999999987532211 000 00123344443 2 3399999999999988874 58
Q ss_pred cEEEEECCCCce---eEEEcCCC-----CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 557 NVALYDINTEKP---LQLFTDMH-----REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 557 ~I~IWDlrt~k~---v~~l~~gH-----~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|.+|.++-... +..++ +| +.-|++..|+|..-.+|+-+|..|+||.
T Consensus 186 RINLWnlei~d~sFnIVDIK-P~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIK-PANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred eeeeccccccCCceeEEEcc-ccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 899999884322 22222 22 3568999999999999999999999985
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.1e-05 Score=82.44 Aligned_cols=143 Identities=14% Similarity=0.156 Sum_probs=108.8
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCC-CCCEEEEEEe------e-------------CCCCEEEEEECCCe
Q 035500 447 PSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGG-TNSVLGLCWL------K-------------KYPSKLVAGSDSGC 506 (606)
Q Consensus 447 P~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH-~~~V~~L~fs------p-------------~~~~~LaSgS~Dgt 506 (606)
|.-..++|..+.||.+||||..+++....+.-..| .+...+..|. | .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 33667999999999999999998887665543333 3455666664 1 12345788889999
Q ss_pred EEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 507 VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
|.++++..++- ...+.+-.|.+.|+++.|+.+-..|.|++.|+.+-.|+...++..+.+. +-+..+.+++.+
T Consensus 82 v~~ys~~~g~i-------t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is 153 (541)
T KOG4547|consen 82 VLLYSVAGGEI-------TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCIS 153 (541)
T ss_pred EEEEEecCCeE-------EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEc
Confidence 99999988531 1111122355679999999888999999999999999999999999988 678899999999
Q ss_pred CCCCeEEEEEeC
Q 035500 587 HHSPLCLLLLHL 598 (606)
Q Consensus 587 P~g~~LLaTgS~ 598 (606)
|+|. ++++||.
T Consensus 154 ~D~~-~l~~as~ 164 (541)
T KOG4547|consen 154 PDGK-ILLTASR 164 (541)
T ss_pred CCCC-EEEeccc
Confidence 9987 5666654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.2e-05 Score=83.65 Aligned_cols=153 Identities=15% Similarity=0.197 Sum_probs=111.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
...++|+-....+-++.+.+-.|-+-|+++|-... + ..++.|.++.|.. .+.++..|.++|.|...|++....
T Consensus 214 a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs-f---~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnq-- 286 (425)
T KOG2695|consen 214 AWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-F---QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQ-- 286 (425)
T ss_pred chhhhhhhccceeeecccccceeEEEEeecccccc-c---ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeeccc--
Confidence 33456765333344566777789999998865432 2 3456799999985 568999999999999999998422
Q ss_pred ccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCce---eEEEcCCCCCCeEE--EEEeCCCCeEE
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKP---LQLFTDMHREPINV--AKFSHHSPLCL 593 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~---v~~l~~gH~~~I~s--V~fsP~g~~LL 593 (606)
....+...+-|.++|++++.-. +++.+++++.+|+|++||.|.-+. ++..+ ||-+.-.- +..++.... +
T Consensus 287 ---G~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN~~a~l~~~v~~eeg~-I 361 (425)
T KOG2695|consen 287 ---GNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVNLSAYLPAHVKEEEGS-I 361 (425)
T ss_pred ---CCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-cccccccccccccccccce-E
Confidence 1145677888899999998776 578999999999999999997666 88888 78544333 333455554 5
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++++.|...|+
T Consensus 362 ~s~GdDcytRi 372 (425)
T KOG2695|consen 362 FSVGDDCYTRI 372 (425)
T ss_pred EEccCeeEEEE
Confidence 66888987764
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.8e-05 Score=56.51 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=32.9
Q ss_pred ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 471 NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 471 ~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
+++..+. +|.+.|.+++|+| ++..|+||+.|++|++||
T Consensus 2 ~~~~~~~--~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFR--GHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE--SSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEc--CCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 3445444 9999999999999 578999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00025 Score=77.79 Aligned_cols=144 Identities=13% Similarity=0.114 Sum_probs=89.2
Q ss_pred eeEEEEcCCCCCEEE-EEeCCC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCC--eEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMA-FGTLDG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSG--CVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~La-SGs~DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~Dg--tIklWDl~ 513 (606)
+...+|+| +|+.++ +.+.+| .|++||..++.... +..+........|+|+ +..++..+ .+| .|.+||+.
T Consensus 245 ~~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~---lt~~~~~~~~~~~spD-g~~i~f~s~~~g~~~iy~~d~~ 319 (430)
T PRK00178 245 NGAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQLSR---VTNHPAIDTEPFWGKD-GRTLYFTSDRGGKPQIYKVNVN 319 (430)
T ss_pred cCCeEECC-CCCEEEEEEccCCCceEEEEECCCCCeEE---cccCCCCcCCeEECCC-CCEEEEEECCCCCceEEEEECC
Confidence 34578999 888777 444555 68888998876543 2245555667889995 45554444 444 46666765
Q ss_pred CCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC-C--cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 514 HIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-K--NVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D-g--~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
++.. ...++. ........|+|+|+.++..+.+ + .|.+||+.+++.. .+... .......|+|+|.
T Consensus 320 ~g~~---------~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~--~~~~~p~~spdg~ 386 (430)
T PRK00178 320 GGRA---------ERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT--SLDESPSVAPNGT 386 (430)
T ss_pred CCCE---------EEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC--CCCCCceECCCCC
Confidence 5321 111221 1223457899999988776643 3 5888999887653 33312 1223568999999
Q ss_pred eEEEEEeCCCe
Q 035500 591 LCLLLLHLTTM 601 (606)
Q Consensus 591 ~LLaTgS~Dgt 601 (606)
+++.++..++.
T Consensus 387 ~i~~~~~~~g~ 397 (430)
T PRK00178 387 MLIYATRQQGR 397 (430)
T ss_pred EEEEEEecCCc
Confidence 88777765554
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00047 Score=74.68 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=96.9
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE-ECCCeEEEEeCCCCCCCcc
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG-SDSGCVRLFDLNHIPPKVA 520 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg-S~DgtIklWDl~~~~~~~~ 520 (606)
.+.++| |++++++++.||.|.++|+.+++.+..++. | ....++++++ ++++++++ -.++++.++|.++.
T Consensus 41 ~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G--~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tl----- 110 (369)
T PF02239_consen 41 GLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKV-G--GNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETL----- 110 (369)
T ss_dssp EEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE--S--SEEEEEEE---TTTEEEEEEEETTEEEEEETTT------
T ss_pred EEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEec-C--CCcceEEEcC-CCCEEEEEecCCCceeEeccccc-----
Confidence 356899 999999999999999999999999888764 3 3478899998 56776655 57999999999883
Q ss_pred cccCCcceEEeec--------CCCeEEEEEccCCCEEEEEeCC-CcEEEEECCCCcee--EEEcCCCCCCeEEEEEeCCC
Q 035500 521 DARGNSSVATYYD--------FEQLTSVHVNSTDDQFLASGYS-KNVALYDINTEKPL--QLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 521 ~l~~~~~i~t~~~--------~~~V~sV~~sp~g~~LaSgs~D-g~I~IWDlrt~k~v--~~l~~gH~~~I~sV~fsP~g 589 (606)
+++..... ...+.+|.-+|....++..-.| +.|-+-|....+.+ ..+. .........|+|++
T Consensus 111 -----e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 111 -----EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFDPDG 183 (369)
T ss_dssp ------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTS
T ss_pred -----cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec--ccccccccccCccc
Confidence 34544432 1347788888888866666555 88888898876543 3333 34667789999999
Q ss_pred CeEEEEEeCCC
Q 035500 590 PLCLLLLHLTT 600 (606)
Q Consensus 590 ~~LLaTgS~Dg 600 (606)
++++++...+.
T Consensus 184 ry~~va~~~sn 194 (369)
T PF02239_consen 184 RYFLVAANGSN 194 (369)
T ss_dssp SEEEEEEGGGT
T ss_pred ceeeecccccc
Confidence 98777654433
|
... |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.3e-06 Score=79.96 Aligned_cols=110 Identities=26% Similarity=0.263 Sum_probs=55.1
Q ss_pred HHHHhh---ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc-cc-cccccccEEecccCCCcccccc-cc
Q 035500 94 LMHAID---QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MV-GRFMHLNTLSLDFCSSLASLHE-DC 167 (606)
Q Consensus 94 ~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~l~tl~l~~~~~~~~~~~-~~ 167 (606)
-|+.++ .+|+++||++|. ...+..|.. =..=++|+|++|+|..+. .+ ..|++|++|.|. +|.|+.+.+ ..
T Consensus 33 ~Ie~L~~~l~~L~~L~Ls~N~--I~~l~~l~~-L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~-~N~I~~l~~l~~ 108 (175)
T PF14580_consen 33 TIENLGATLDKLEVLDLSNNQ--ITKLEGLPG-LPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS-NNKISDLNELEP 108 (175)
T ss_dssp ---S--TT-TT--EEE-TTS----S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-T-TS---SCCCCGG
T ss_pred cccchhhhhcCCCEEECCCCC--CccccCccC-hhhhhhcccCCCCCCccccchHHhCCcCCEEECc-CCcCCChHHhHH
Confidence 344444 378999999954 444554433 122367999999999995 34 469999999999 999999977 67
Q ss_pred cccCccccEEEcccccccchhh-hhHHhhcCCchhhhhhce
Q 035500 168 FSCMPYLMCLSMCETRIVNLWT-TTAAISKLPYLMELRFQM 207 (606)
Q Consensus 168 ~~~~p~l~~l~~~~~~~~~l~~-~~~~l~~~~~l~~l~~~~ 207 (606)
.+.+|+|+.|+|.+|-|++.=. -.--+.++|+|+.|.++.
T Consensus 109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 8899999999999999987622 123578899999998666
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00043 Score=84.37 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=108.9
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe------ccCC------CCCEEEEEEeeCCCCEEEEEECCCe
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP------SIGG------TNSVLGLCWLKKYPSKLVAGSDSGC 506 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~------~~gH------~~~V~~L~fsp~~~~~LaSgS~Dgt 506 (606)
.+..++++|.++.+.++.+.+++|++||..++....... ..++ -....+++|+|++..++++-+.++.
T Consensus 684 ~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 684 SPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 366789999677788888889999999998765432110 0011 1245679999955446777788899
Q ss_pred EEEEeCCCCCCCcccccC---CcceEEeec---------CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 035500 507 VRLFDLNHIPPKVADARG---NSSVATYYD---------FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~---~~~i~t~~~---------~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~ 574 (606)
|++||+.++......... ......+.. ...-.+++++++|+++++-+.++.|++||..++........
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 999998864311000000 000001100 01135889999999999999999999999988765433321
Q ss_pred C------------CCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 575 M------------HREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 575 g------------H~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+ +-.....++++++|. ++++.+.++.||.
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irv 884 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRY 884 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEE
Confidence 1 223567899999996 7888888888875
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.4e-05 Score=82.67 Aligned_cols=103 Identities=12% Similarity=0.169 Sum_probs=76.6
Q ss_pred EeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee--c
Q 035500 456 GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY--D 533 (606)
Q Consensus 456 Gs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~--~ 533 (606)
++....+.+|....+.... ..||-+.++.++|+| ++..++++-.|..|++-..... .-+.+|- |
T Consensus 128 agD~~~~di~s~~~~~~~~---~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~----------f~IesfclGH 193 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRCEP---ILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPAT----------FVIESFCLGH 193 (390)
T ss_pred cCCceeeeeecccccCcch---hhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcc----------cchhhhcccc
Confidence 4455666667666555554 349999999999999 5689999999999998665542 2233333 4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 534 FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 534 ~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
..-|..++.-+ +..++|||.|+++++||+++|+.+.++.
T Consensus 194 ~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 194 KEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred Hhheeeeeecc-CceeeecCCCCcEEEEecccCCcccccc
Confidence 45588888764 4568999999999999999998876655
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00039 Score=70.55 Aligned_cols=148 Identities=11% Similarity=0.065 Sum_probs=102.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++++| ++.++++.+....|..|.+.. ++...........+.-.+..|+. +...+|+++.||++.|||++.....
T Consensus 161 ~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccc
Confidence 56789999 999999999999999999865 33332222334455678889986 6688999999999999999986432
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCCceeEEEcC------CC-CCCeEEEEEeCCC
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTD--DQFLASGYSKNVALYDINTEKPLQLFTD------MH-REPINVAKFSHHS 589 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g--~~LaSgs~Dg~I~IWDlrt~k~v~~l~~------gH-~~~I~sV~fsP~g 589 (606)
..... -..-.|.+++..+.|++.| .++.-+-.-+.+.+-|+|+.+-.+.+.. .| +..|....|+.++
T Consensus 239 m~~~s----strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 239 MAEIS----STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred hhhhc----ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 11110 0111256779999999877 3555554558899999999865433321 12 2347777787776
Q ss_pred CeEE
Q 035500 590 PLCL 593 (606)
Q Consensus 590 ~~LL 593 (606)
..+.
T Consensus 315 ~s~~ 318 (344)
T KOG4532|consen 315 ESND 318 (344)
T ss_pred cccc
Confidence 6544
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.8e-05 Score=79.67 Aligned_cols=120 Identities=15% Similarity=0.143 Sum_probs=85.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC--
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP-- 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~-- 517 (606)
|.+++-||...++++.|+.||.+-+||++...... -.+..|+.+++.+-|+|.++..|+++|.||.+-.||..+...
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i 260 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSI 260 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchH-HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEe
Confidence 67888999888899999999999999998764322 224589999999999999999999999999999999885211
Q ss_pred -----CcccccCCcceEE-ee--c-----CCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 035500 518 -----KVADARGNSSVAT-YY--D-----FEQLTSVHVNSTDDQFLASGYSKNVALYD 562 (606)
Q Consensus 518 -----~~~~l~~~~~i~t-~~--~-----~~~V~sV~~sp~g~~LaSgs~Dg~I~IWD 562 (606)
..+.|....+++. ++ . ...|++... .|..+++|++-+.|++++
T Consensus 261 ~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 261 SNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 1222322223322 11 0 112333333 377888888878887764
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00035 Score=77.55 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=84.2
Q ss_pred eeEEEEcCCCCCEEEEE----eCCCcEE----EEECCCCceEE-EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFG----TLDGEVI----VINHENGNVAC-YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSG----s~DGtVr----IWDi~tg~~v~-~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
+.++.||-.++..+.+. +.+|.+. +|+...++... .+......+.|.+.+++| ...+++.|..||+|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEE
Confidence 55677887677777663 3455543 56665443321 233347788999999999 67899999999999999
Q ss_pred eCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 035500 511 DLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE 566 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~ 566 (606)
|..... ....+..-..+.++|||+|..|++|+.-|.+.+||+.-+
T Consensus 287 D~~~~~-----------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGV-----------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCe-----------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 988731 111123344789999999999999999999999999854
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.9e-06 Score=65.21 Aligned_cols=59 Identities=27% Similarity=0.429 Sum_probs=53.1
Q ss_pred ccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 147 MHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 147 ~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
++|.+|.|. .|+|+.++.+.|..||+|+.|.|.+|+|..+ .-.++..+|+|++|.++.|
T Consensus 1 p~L~~L~l~-~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i--~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLS-NNKLTEIPPDSFSNLPNLETLDLSNNNLTSI--PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEET-SSTESEECTTTTTTGTTESEEEETSSSESEE--ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECC-CCCCCccCHHHHcCCCCCCEeEccCCccCcc--CHHHHcCCCCCCEEeCcCC
Confidence 579999999 7899999999999999999999999999877 3346899999999998875
|
... |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.5e-05 Score=91.13 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=116.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+++.=||.++ +-+||+.||.|++|.+..+..+-.+...|. ..|+.+.|+. .|+.+..+-.||.+.+|....
T Consensus 2211 v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p----- 2282 (2439)
T KOG1064|consen 2211 VRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP----- 2282 (2439)
T ss_pred eeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcc-cCCceeeeccCCceeecccCC-----
Confidence 66778899555 667999999999999999998888776565 8999999996 678888889999999998873
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEe---CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASG---YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs---~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.+..+++.| ....+..|- +..++++| +++.+.+||..-......+...|.+.++++++-|..+ ++.+
T Consensus 2283 ------k~~~s~qchnk~~~Df~Fi--~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llis 2353 (2439)
T KOG1064|consen 2283 ------KPYTSWQCHNKALSDFRFI--GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLIS 2353 (2439)
T ss_pred ------cceeccccCCccccceeee--ehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEe
Confidence 356667644 446777665 36666664 4689999998854333233347999999999999876 7999
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
||.+|-|..
T Consensus 2354 ggr~G~v~l 2362 (2439)
T KOG1064|consen 2354 GGRKGEVCL 2362 (2439)
T ss_pred cCCcCcEEE
Confidence 999998864
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.7e-05 Score=54.31 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=32.5
Q ss_pred ceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 035500 527 SVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYD 562 (606)
Q Consensus 527 ~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWD 562 (606)
++.++.+| .+|++|+|+|++.+|++|+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56777765 6699999999999999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.6e-06 Score=91.46 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=114.1
Q ss_pred HHHHHHHHhhccceEEEccCccccchHHHhhccCCCceeEEEccccchhc-cccccccccccEEecccCCCccccccccc
Q 035500 90 YIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRK-LNMVGRFMHLNTLSLDFCSSLASLHEDCF 168 (606)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~l~tl~l~~~~~~~~~~~~~~ 168 (606)
|.....++-.++++..+.++ ..+.+++ -....|+.++|+.|.|.+ ++-++.|..|+.|+|. +|.|+.+... .
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~-~n~i~~i~~~-l 114 (414)
T KOG0531|consen 42 LLLQLVPSDLEEIDLIFNLD-GSDEDLV----ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLY-DNKIEKIENL-L 114 (414)
T ss_pred cccccccchhhhhcchhccc-cchhhhH----HHhHhHHhhccchhhhhhhhcccccccceeeeecc-ccchhhcccc-h
Confidence 55666777677766666665 2233331 456678889999999999 6679999999999999 9999999654 7
Q ss_pred ccCccccEEEcccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccc
Q 035500 169 SCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRD 248 (606)
Q Consensus 169 ~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (606)
++||+|..|++++|+|..+ ..|.+|+.|++|.+-+..
T Consensus 115 ~~~~~L~~L~ls~N~I~~i----~~l~~l~~L~~L~l~~N~--------------------------------------- 151 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKL----EGLSTLTLLKELNLSGNL--------------------------------------- 151 (414)
T ss_pred hhhhcchheeccccccccc----cchhhccchhhheeccCc---------------------------------------
Confidence 8999999999999999999 778888888888744422
Q ss_pred cCcccchhhhcccchhhhhccCCCCCCCcceeccc-ccC-CCCCCCCccccc
Q 035500 249 ADEVELPKYLRTMNLMELSSCLSPNLNGHAEMLDE-VND-SNEFPGGAHKQD 298 (606)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~ 298 (606)
..++.+|+.+..|+.++++.|++..|-.. ++. .+..++.+.+|.
T Consensus 152 ------i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 152 ------ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ------chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 12566677788999999999999988873 222 344444444443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00028 Score=83.36 Aligned_cols=152 Identities=13% Similarity=0.088 Sum_probs=110.0
Q ss_pred eeEEEEcCCCCC-EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPS-LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~-~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|..-+|....+. .++.+...+.|..||+.+.......+.....+.|++++.+| .+.+++.|+.-|.+-+||++-
T Consensus 1152 v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF---- 1226 (1431)
T KOG1240|consen 1152 VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRF---- 1226 (1431)
T ss_pred EEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeec----
Confidence 555566554555 78889999999999999877777666656678999999999 567999999999999999998
Q ss_pred cccccCCcceEEeec--CCCeEEEEEccCC---CEEEEEe--CCCcEEEEECCCCceeEEEcCC----------------
Q 035500 519 VADARGNSSVATYYD--FEQLTSVHVNSTD---DQFLASG--YSKNVALYDINTEKPLQLFTDM---------------- 575 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~--~~~V~sV~~sp~g---~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~g---------------- 575 (606)
+.++..+.+ +.++..|..+|.. ...+++| ..+-|.+|++.+|....++..+
T Consensus 1227 ------~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~ 1300 (1431)
T KOG1240|consen 1227 ------RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDAR 1300 (1431)
T ss_pred ------CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCC
Confidence 567877775 5668888888763 3444444 4688999999998665554421
Q ss_pred --CCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 576 --HREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 576 --H~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
+.-......+. .+.-++.||+.|..||
T Consensus 1301 kp~~~~~~~~~~~-~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1301 KPDSLAGISCGVC-EKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred CCCcccceeeecc-cCCceeeecCCcccee
Confidence 11112222232 2333678899998887
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00098 Score=74.03 Aligned_cols=143 Identities=12% Similarity=0.109 Sum_probs=86.2
Q ss_pred eEEEEcCCCCCEEEE-EeCCCc--EEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCe--EEEEeCCC
Q 035500 441 RQFEYNPSNPSLMAF-GTLDGE--VIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGC--VRLFDLNH 514 (606)
Q Consensus 441 ~slafsP~dg~~LaS-Gs~DGt--VrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~Dgt--IklWDl~~ 514 (606)
...+|+| +++.++. .+.+|. |.+||+.+++... ...+.......+|+|+ +..+ ++...++. |.++|+.+
T Consensus 265 ~~~~wSP-DG~~La~~~~~~g~~~Iy~~dl~tg~~~~---lt~~~~~~~~p~wSpD-G~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 265 GAPRFSP-DGKKLALVLSKDGQPEIYVVDIATKALTR---ITRHRAIDTEPSWHPD-GKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred CCeeECC-CCCEEEEEEeCCCCeEEEEEECCCCCeEE---CccCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCC
Confidence 3568999 8887765 566775 7777888776543 2244455678899995 4555 44444555 44455554
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC-CC--cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY-SK--NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~-Dg--~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
+. ....++... .....+|+|+|++++..+. ++ .|.++|+.+++... +.... ......|+|+|..
T Consensus 340 g~---------~~~Lt~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~ 406 (448)
T PRK04792 340 GK---------VSRLTFEGE-QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTM 406 (448)
T ss_pred CC---------EEEEecCCC-CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCE
Confidence 21 111122222 2345689999987776654 34 45667888776533 33121 1224579999998
Q ss_pred EEEEEeCCCe
Q 035500 592 CLLLLHLTTM 601 (606)
Q Consensus 592 LLaTgS~Dgt 601 (606)
++.+...++.
T Consensus 407 I~~~~~~~g~ 416 (448)
T PRK04792 407 VIYSTTYQGK 416 (448)
T ss_pred EEEEEecCCc
Confidence 8777766553
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.2e-06 Score=82.27 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=58.5
Q ss_pred cCCCceeEEEccccchhccccccccccccEEecccCC--CcccccccccccCccccEEEcccccccchhhhhHHhhcCCc
Q 035500 122 QVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCS--SLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPY 199 (606)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~--~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~ 199 (606)
-.|-.-+-|.++.....-+-.+|.+++|++|.|. +| ++..==+-.-.+.|+|+.|.+++|+|.-+ .|+..|.+|+.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~ls-dn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELS-DNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhccc-CCcccccccceehhhhCCceeEEeecCCccccc-cccchhhhhcc
Confidence 3344445566777777778889999999999998 77 55542222233449999999999999974 77777777777
Q ss_pred hhhhh
Q 035500 200 LMELR 204 (606)
Q Consensus 200 l~~l~ 204 (606)
|..|.
T Consensus 118 L~~Ld 122 (260)
T KOG2739|consen 118 LKSLD 122 (260)
T ss_pred hhhhh
Confidence 77665
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.4e-05 Score=77.72 Aligned_cols=141 Identities=13% Similarity=0.112 Sum_probs=87.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe------EEEEeCCCCCCCcccc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC------VRLFDLNHIPPKVADA 522 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt------IklWDl~~~~~~~~~l 522 (606)
-++-+++|+.||.+.+++.+.-..+....-..|.+. .+.+... .++ ++.++.=|+ .+.|+++..+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~-~~~-~i~s~~~g~~n~~d~~~a~~~~p~~------ 170 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICR-HGN-SILSGGCGNWNAQDNFYANTLDPIK------ 170 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceee-ccc-EEecCCcceEeeccceeeecccccc------
Confidence 456899999999999999775211110000112111 1122222 122 333333333 3444444311
Q ss_pred cCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 523 RGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 523 ~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
..+........|.+++-||.. +.++.|+.||.+.+||.|+... +..+. +|+.+|+.|.|+|..+.-|.|+++||
T Consensus 171 ---t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~-ahk~~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 171 ---TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK-AHKAEIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred ---cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH-HhhhhhhheeccCCCchheeEecCCC
Confidence 011111123449999999986 5788889999999999998744 44555 89999999999998887788999999
Q ss_pred eE
Q 035500 601 MS 602 (606)
Q Consensus 601 tI 602 (606)
.+
T Consensus 247 sl 248 (319)
T KOG4714|consen 247 SL 248 (319)
T ss_pred cE
Confidence 75
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00023 Score=75.60 Aligned_cols=145 Identities=14% Similarity=0.206 Sum_probs=103.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++.++|+|.+..++..++.+.+|+|.|+++...+..+. .| ..+++.+|.-++...++.|-..|.|.+||++....
T Consensus 196 IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~-- 270 (463)
T KOG1645|consen 196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG-- 270 (463)
T ss_pred hhhhccCccccceeeeeccCceEEEEecccceeeehee--cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc--
Confidence 88999999777799999999999999999988887665 44 78999999987778899999999999999998532
Q ss_pred ccccCCcceEEeec---CCCeEEEE------EccCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYD---FEQLTSVH------VNSTDDQFLASGYSKNVALYDINTE--KPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 520 ~~l~~~~~i~t~~~---~~~V~sV~------~sp~g~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
++..+.. -.+|..|+ ..+.+.+++.++.+ +..|.+... ....+.+.+..+.+.++++++.
T Consensus 271 -------~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~ 341 (463)
T KOG1645|consen 271 -------PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGV 341 (463)
T ss_pred -------hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence 2222221 22333332 23345566666554 567776632 3344444334678888888888
Q ss_pred CCeEEEEEeC
Q 035500 589 SPLCLLLLHL 598 (606)
Q Consensus 589 g~~LLaTgS~ 598 (606)
+.++++|.-.
T Consensus 342 snh~l~tyRs 351 (463)
T KOG1645|consen 342 SNHLLLTYRS 351 (463)
T ss_pred cceEEEEecC
Confidence 8888887655
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.3e-05 Score=91.89 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=105.9
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE---ECCCeEEEEeCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG---SDSGCVRLFDLNHI 515 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg---S~DgtIklWDl~~~ 515 (606)
||+.+.|+- .|+.+..+..||.+-+|.+. .+. ++....|.....++.|-. ..++++ ++++.+.+||-...
T Consensus 2253 ~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk~--~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2253 RVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PKP--YTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred hhhhhhhcc-cCCceeeeccCCceeecccC-Ccc--eeccccCCccccceeeee---hhhhccccCCCCCcccchhcccC
Confidence 456677777 88889999999999999987 233 334458898999999985 456665 46889999997664
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.. ...+. --|.+.++++++-|..++++|||.+|.|++||++..+..+.++. ++ .+..|++
T Consensus 2326 ~~-------~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~--~~~~f~~ 2385 (2439)
T KOG1064|consen 2326 PM-------NSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD--TREYFVT 2385 (2439)
T ss_pred cc-------cceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh--hhheeec
Confidence 32 23333 33566799999999999999999999999999999888877772 33 2335788
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
|+..|.+++
T Consensus 2386 ~ss~g~ikI 2394 (2439)
T KOG1064|consen 2386 GSSEGNIKI 2394 (2439)
T ss_pred cCcccceEE
Confidence 888887764
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0017 Score=71.45 Aligned_cols=120 Identities=16% Similarity=0.277 Sum_probs=84.2
Q ss_pred CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE--EEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCe
Q 035500 460 GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL--VAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQL 537 (606)
Q Consensus 460 GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L--aSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V 537 (606)
.++++.+++ |... .+++ ...++|+++.|+|. +.-+ +-|-.=-.+.|+|++.. ++..+ +.++=
T Consensus 251 q~Lyll~t~-g~s~-~V~L-~k~GPVhdv~W~~s-~~EF~VvyGfMPAkvtifnlr~~-----------~v~df-~egpR 314 (566)
T KOG2315|consen 251 QTLYLLATQ-GESV-SVPL-LKEGPVHDVTWSPS-GREFAVVYGFMPAKVTIFNLRGK-----------PVFDF-PEGPR 314 (566)
T ss_pred ceEEEEEec-CceE-EEec-CCCCCceEEEECCC-CCEEEEEEecccceEEEEcCCCC-----------EeEeC-CCCCc
Confidence 367777776 3322 2233 34789999999994 4444 33445668889998862 33332 34556
Q ss_pred EEEEEccCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 538 TSVHVNSTDDQFLASGYS---KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 538 ~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
+++-|+|.|++++.+|-+ |.+-+||..+.+.+..+.- ..-+-..|+|+|.+++ |++..
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a---~~tt~~eW~PdGe~fl-TATTa 375 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA---ANTTVFEWSPDGEYFL-TATTA 375 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---CCceEEEEcCCCcEEE-EEecc
Confidence 888899999988888765 8999999999888887772 4456689999999855 44433
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00024 Score=74.06 Aligned_cols=160 Identities=16% Similarity=0.227 Sum_probs=108.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCC-----CCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGG-----TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH-----~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
+.++.++. |...+.++ .|-+|.+|+++- .+....+...+| +.-|++..|+|...+.++-.|.-|+|++-|++
T Consensus 167 iNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 167 INSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred eeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 78888988 88777766 578899999864 233333333344 34588899999888889889999999999999
Q ss_pred CCCC--Ccccc---cCCcceEEe-ec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECC-CCceeEEEcCCCC--------
Q 035500 514 HIPP--KVADA---RGNSSVATY-YD-FEQLTSVHVNSTDDQFLASGYSKNVALYDIN-TEKPLQLFTDMHR-------- 577 (606)
Q Consensus 514 ~~~~--~~~~l---~~~~~i~t~-~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr-t~k~v~~l~~gH~-------- 577 (606)
.... ..+.+ +..+.-+.+ .. -..|.++.|++.|+++++-.. -+|++||++ ..+++.+.+ .|.
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~-vh~~lr~kLc~ 322 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP-VHEYLRSKLCS 322 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEe-ehHhHHHHHHH
Confidence 5311 00000 000000111 11 245889999999999998876 799999995 456776666 342
Q ss_pred ----CCe---EEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 578 ----EPI---NVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 578 ----~~I---~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..| ..++|+.++.+ ++|||.....|.
T Consensus 323 lYEnD~IfdKFec~~sg~~~~-v~TGsy~n~frv 355 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSGNDSY-VMTGSYNNVFRV 355 (433)
T ss_pred HhhccchhheeEEEEcCCcce-EecccccceEEE
Confidence 222 46789888875 789998887765
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.62 E-value=2.4e-05 Score=86.55 Aligned_cols=75 Identities=21% Similarity=0.324 Sum_probs=49.4
Q ss_pred eeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 127 CHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
=++||||.|.|..+. -+|.=++|..|+|. +|+||-+.++||..+.+|.+|-+.+|||+-|-- .+...||.|..|.
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~--r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ--RSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeec-cccccccccccccccchheeeecccCcccccCH--HHhhhcchhhhhh
Confidence 355666666665443 55666777777777 777777777777777777777777777776632 3333466666554
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0014 Score=72.41 Aligned_cols=132 Identities=12% Similarity=0.081 Sum_probs=83.7
Q ss_pred eEEEEcCCCCCEEEEEe-CCCcEEEEE--CCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC---CeEEEEeCC
Q 035500 441 RQFEYNPSNPSLMAFGT-LDGEVIVIN--HEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS---GCVRLFDLN 513 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs-~DGtVrIWD--i~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D---gtIklWDl~ 513 (606)
...+|+| ||+.|+..+ .+|...+|. +.. +.....+. .+...+....|+| ++..|+..+.+ ..|.+||+.
T Consensus 284 ~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt--~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 284 GNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT--KKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLA 359 (428)
T ss_pred CCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEec--cCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECC
Confidence 3567999 998887765 467666665 332 22222222 4445677899999 45666655433 368899988
Q ss_pred CCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeC---CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGY---SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~---Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
++. ...+. ....+....|+|+|+.++..+. ...|.+||+..++...... ..+.+...+|+|..
T Consensus 360 ~g~-----------~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~--~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 360 TGR-----------DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI--GSGEKRFPSWGAFP 426 (428)
T ss_pred CCC-----------eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CCCcccCceecCCC
Confidence 742 11222 2234677899999987664432 3578899998877655444 34567778888754
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00029 Score=77.00 Aligned_cols=148 Identities=11% Similarity=0.029 Sum_probs=94.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-Cc----eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GN----VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~----~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
|+.++--. +.+-+++++.|++|++|.++. |. ..-.+....|+.+|.++-|.. +-+.++ |-||-|.+||.--
T Consensus 738 iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~--ScD~giHlWDPFi 813 (1034)
T KOG4190|consen 738 IRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIA--SCDGGIHLWDPFI 813 (1034)
T ss_pred hHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceee--eccCcceeecccc
Confidence 44433333 667888999999999999754 21 122344558999999999986 435555 4589999999765
Q ss_pred CCCCcccccCCcceEEe---ecCCCeEEEEEccC--CCEEEEE-eCCCcEEEEECCCCceeEEEcC----CCCCCeEEEE
Q 035500 515 IPPKVADARGNSSVATY---YDFEQLTSVHVNST--DDQFLAS-GYSKNVALYDINTEKPLQLFTD----MHREPINVAK 584 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~---~~~~~V~sV~~sp~--g~~LaSg-s~Dg~I~IWDlrt~k~v~~l~~----gH~~~I~sV~ 584 (606)
+. ++... ..++.+..|..-|. ..++++| +...+|+++|.|.++-+.+++. +-...+.+++
T Consensus 814 gr----------~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 814 GR----------LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cc----------hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 32 22111 12333333333333 3455555 7789999999998876555542 2345688999
Q ss_pred EeCCCCeEEEEEeCCCeE
Q 035500 585 FSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 585 fsP~g~~LLaTgS~DgtI 602 (606)
..|.|.++ |.|=..|.|
T Consensus 884 Va~~GN~l-Aa~LSnGci 900 (1034)
T KOG4190|consen 884 VADKGNKL-AAALSNGCI 900 (1034)
T ss_pred eccCcchh-hHHhcCCcE
Confidence 99999874 444444443
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0018 Score=72.07 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=78.3
Q ss_pred EEEEEEeeCCCCEEEEE----ECCCeE----EEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC
Q 035500 485 VLGLCWLKKYPSKLVAG----SDSGCV----RLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK 556 (606)
Q Consensus 485 V~~L~fsp~~~~~LaSg----S~DgtI----klWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg 556 (606)
..++.|+...+..+.|. |.+|.+ ++|++...+. . ...+.++....+|.+.+++|+...++.|+.||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-----q-rvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg 281 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-----Q-RVSVTSIPLPSQVICCARSPSEDKLVLGCEDG 281 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-----e-EEEEEEEecCCcceEEecCcccceEEEEecCC
Confidence 45666665555555553 334432 3455544221 0 23455666788899999999999999999999
Q ss_pred cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 557 NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 557 ~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
.|.+||..++..... + +.-..+.++|||+|. ++++|+.-|.+.|+
T Consensus 282 SiiLyD~~~~~t~~~-k--a~~~P~~iaWHp~ga-i~~V~s~qGelQ~F 326 (545)
T PF11768_consen 282 SIILYDTTRGVTLLA-K--AEFIPTLIAWHPDGA-IFVVGSEQGELQCF 326 (545)
T ss_pred eEEEEEcCCCeeeee-e--ecccceEEEEcCCCc-EEEEEcCCceEEEE
Confidence 999999987744332 2 345678899999998 68899998988774
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.56 E-value=5.6e-05 Score=77.99 Aligned_cols=97 Identities=23% Similarity=0.280 Sum_probs=76.0
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
|-|.++||+.|+ +.-+.+=-.--..-.+||||.|.|+...+...+.+|..|.|. +|-++++. +--.-+-|.++|.+
T Consensus 284 q~LtelDLS~N~--I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS-~N~Ls~~~-Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNL--ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLS-GNLLAECV-GWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccc--hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecc-cchhHhhh-hhHhhhcCEeeeeh
Confidence 567788888743 333433333345567899999999999999999999999999 88888884 45667889999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhh
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
.+|.|..| ..|.||=||+.|.
T Consensus 360 a~N~iE~L----SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 360 AQNKIETL----SGLRKLYSLVNLD 380 (490)
T ss_pred hhhhHhhh----hhhHhhhhheecc
Confidence 99888777 8999999998775
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=1.9e-05 Score=81.38 Aligned_cols=108 Identities=26% Similarity=0.327 Sum_probs=78.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccc--h---h-ccccccccccccEEecccCCCcccc-cccccccCc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATN--I---R-KLNMVGRFMHLNTLSLDFCSSLASL-HEDCFSCMP 172 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~-~l~~~~~~~~l~tl~l~~~~~~~~~-~~~~~~~~p 172 (606)
-|+...|++||++.-=.+.+=|..--+-.++.|..++ + . +.+..-.|+++..+.+. .++|... .|.=|+-+|
T Consensus 146 P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~-e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 146 PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVC-EGPLKTESSEKGSEPFP 224 (418)
T ss_pred hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeee-cCcccchhhcccCCCCC
Confidence 3778888888876654444444444444555554332 1 1 22233369999999999 8888877 345588999
Q ss_pred cccEEEcccccccchhhhhHHhhcCCchhhhhhceec
Q 035500 173 YLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 173 ~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
.+-+|.+..|+|- -|..+.||.++|+|+.||...|+
T Consensus 225 ~~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 225 SLSCLNLGANNID-SWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cchhhhhcccccc-cHHHHHHHcCCchhheeeccCCc
Confidence 9999999999997 79999999999999999966655
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00016 Score=87.25 Aligned_cols=106 Identities=21% Similarity=0.181 Sum_probs=73.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
..||+++|+++.+....-.+++..--+=+.|||++|.+...--.+.+.+|++|+|. +|.++......|..+++|+.|.|
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls-~n~~~~~~p~~~~~l~~L~~L~L 171 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS-NNMLSGEIPNDIGSFSSLKVLDL 171 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECc-CCcccccCChHHhcCCCCCEEEC
Confidence 56888888887765444444444444567788888887654444568888888888 67776554455788888888888
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++... .-.++.+|++|+.|.+..|
T Consensus 172 ~~n~l~~~--~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 172 GGNVLVGK--IPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred ccCccccc--CChhhhhCcCCCeeeccCC
Confidence 88876532 1235677888888876653
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=3.7e-05 Score=78.59 Aligned_cols=44 Identities=30% Similarity=0.505 Sum_probs=38.4
Q ss_pred hhccCCCCcc--cchhhHHHHHhhCCCceeccCCCCCcchHHHHHH
Q 035500 309 YISHHPSPIC--FEKHYREYMIASLPQLEVLDNLPIGRLDREIAKS 352 (606)
Q Consensus 309 ~l~~~~npi~--~~~~YReyvI~~Lp~LkvLD~~~i~~~eRe~A~~ 352 (606)
-+-+..||+| .-.+||..|+-.||.|+-||+.++++.|-+.|.+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr 137 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALR 137 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHh
Confidence 5557889998 5688999999999999999999999988887763
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0075 Score=66.53 Aligned_cols=141 Identities=11% Similarity=0.012 Sum_probs=87.1
Q ss_pred eeEEEEcCCCCCE-EEEEeC---CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC--eEEEEeCC
Q 035500 440 PRQFEYNPSNPSL-MAFGTL---DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG--CVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~-LaSGs~---DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg--tIklWDl~ 513 (606)
...-.|+| +|+. ++..+. +..|.++|+.+++...... ..+.+....|+|++...+++.+.++ .|.++|+.
T Consensus 190 ~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 190 NIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred eEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 34567999 8874 664443 3568999998887655332 3445667889995544555665554 56666766
Q ss_pred CCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeC-C--CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGY-S--KNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~-D--g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
.+. ...+.. ........|+|+|+.++-.+. . ..|.++|+.+++..+....+. ....|+|+|
T Consensus 266 ~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG 330 (419)
T PRK04043 266 TKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYK 330 (419)
T ss_pred CCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCC
Confidence 531 122221 222334579999986665543 2 368888998877644333122 124899999
Q ss_pred CeEEEEEeCC
Q 035500 590 PLCLLLLHLT 599 (606)
Q Consensus 590 ~~LLaTgS~D 599 (606)
++++.++...
T Consensus 331 ~~Ia~~~~~~ 340 (419)
T PRK04043 331 NYIVYSSRET 340 (419)
T ss_pred CEEEEEEcCC
Confidence 9877776543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.002 Score=73.66 Aligned_cols=137 Identities=13% Similarity=0.129 Sum_probs=98.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC----CCCEEEEEECCCeEEEEeCCCCCCCcccccC
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK----YPSKLVAGSDSGCVRLFDLNHIPPKVADARG 524 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~----~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~ 524 (606)
+|.++||||.||+|.|..+-+++....+.+ ..++.+++++|+ ..+.+++||.-| +.++.-+-.+.
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn------- 150 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN------- 150 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------
Confidence 689999999999999999888777665543 457999999985 356799999998 66665332211
Q ss_pred CcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCe------EEEEEeCCCCeEEEEEeC
Q 035500 525 NSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPI------NVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 525 ~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I------~sV~fsP~g~~LLaTgS~ 598 (606)
+.++..-.+.++|.+|.|+ |+++|=++++| |++||..+++.+..++..| ..+ ..+.|.+... ++.|=.
T Consensus 151 k~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~-~~~R~e~fpphl~W~~~~~--LVIGW~ 224 (846)
T KOG2066|consen 151 KDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPS-QSVRPELFPPHLHWQDEDR--LVIGWG 224 (846)
T ss_pred ccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCC-CCCCcccCCCceEecCCCe--EEEecC
Confidence 3344344467889999997 88888887765 7999999998877777555 222 3466766554 445544
Q ss_pred CCeE
Q 035500 599 TTMS 602 (606)
Q Consensus 599 DgtI 602 (606)
|.+-
T Consensus 225 d~v~ 228 (846)
T KOG2066|consen 225 DSVK 228 (846)
T ss_pred CeEE
Confidence 4433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0005 Score=77.24 Aligned_cols=141 Identities=14% Similarity=0.115 Sum_probs=96.4
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE----E---------EEeccCCCCCEEEEEEeeCCCCEEEEEECCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA----C---------YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG 505 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v----~---------~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg 505 (606)
+..|++|+. ..+++|.||.||.++|-.+.+...- . ...+.||.+.|.-+.|+- +..+|.|...+|
T Consensus 16 kL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 16 KLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDTSG 93 (1189)
T ss_pred eEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCCCc
Confidence 477899999 7789999999999999987652211 0 112459999999999996 557888888999
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEE
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAK 584 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~ 584 (606)
.|-+|-+-.+.= . .....-+.++.|.+++|+.+|..++..-.||.|.+=.+...+. -+.++ ......+.
T Consensus 94 lIiVWmlykgsW-----~--EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk---g~~l~hv~ 163 (1189)
T KOG2041|consen 94 LIIVWMLYKGSW-----C--EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK---GQLLAHVL 163 (1189)
T ss_pred eEEEEeeecccH-----H--HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc---hhecccee
Confidence 999999877410 0 0111222355699999999999888888888877665543221 01122 11223477
Q ss_pred EeCCCCe
Q 035500 585 FSHHSPL 591 (606)
Q Consensus 585 fsP~g~~ 591 (606)
|+++...
T Consensus 164 ws~D~~~ 170 (1189)
T KOG2041|consen 164 WSEDLEQ 170 (1189)
T ss_pred ecccHHH
Confidence 8877653
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0025 Score=64.79 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=90.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCCC--CEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGTN--SVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~--~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
-+..++.|+++++.+++.+..... -|.. .+..+.+++ ++.++++.++...|-.|.+..... .-+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~----~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~se--------y~~~ 196 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFA----VHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESE--------YIEN 196 (344)
T ss_pred ceeeccCCcceeEEEEecCcccce----eeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccc--------eeee
Confidence 456778899999999875443322 2222 277888998 678999999999999999876321 1112
Q ss_pred Eee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-e----EEEcCCCCCCeEEEEEeCCCC
Q 035500 530 TYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-L----QLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 530 t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v----~~l~~gH~~~I~sV~fsP~g~ 590 (606)
+.. ..+.-.+.+|+..+..||+++.||++.|||+|.... . .+-+ .|.+++..+.|+|.|.
T Consensus 197 ~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp-~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRP-HHNGAFRVCRFSLYGL 263 (344)
T ss_pred eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCC-CCCCceEEEEecCCCc
Confidence 122 233457788999999999999999999999996433 2 2233 4899999999998765
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.016 Score=58.48 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=101.5
Q ss_pred eceeEEEEcCCCCCEEEEEeCC--------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLD--------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~D--------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
.++..+++.| +|++.++.... |.|..++.. ++...... .-....+|+|+|++..++++-+..+.|..
T Consensus 86 ~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---~~~~pNGi~~s~dg~~lyv~ds~~~~i~~ 160 (246)
T PF08450_consen 86 NRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---GLGFPNGIAFSPDGKTLYVADSFNGRIWR 160 (246)
T ss_dssp EEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---EESSEEEEEEETTSSEEEEEETTTTEEEE
T ss_pred CCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec---CcccccceEECCcchheeecccccceeEE
Confidence 4588999999 89888776654 568888877 55443332 23457899999954334567788889998
Q ss_pred EeCCCCCCCcccccCCcceEEeecCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe-C
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFE-QLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS-H 587 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~-~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs-P 587 (606)
+++....... .....+..+.... ..-.+++..+|+++++....+.|.++|.+ |+.+..+..+ ...+++++|. |
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~ 235 (246)
T PF08450_consen 161 FDLDADGGEL---SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGP 235 (246)
T ss_dssp EEEETTTCCE---EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEEST
T ss_pred Eeccccccce---eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECC
Confidence 8887532100 0011111222222 36789999999998888888999999998 8888877754 4589999994 7
Q ss_pred CCCeEEEEEe
Q 035500 588 HSPLCLLLLH 597 (606)
Q Consensus 588 ~g~~LLaTgS 597 (606)
+...|++|.+
T Consensus 236 ~~~~L~vTta 245 (246)
T PF08450_consen 236 DGKTLYVTTA 245 (246)
T ss_dssp TSSEEEEEEB
T ss_pred CCCEEEEEeC
Confidence 7788888875
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00038 Score=73.95 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=77.6
Q ss_pred EEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEE
Q 035500 462 VIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVH 541 (606)
Q Consensus 462 VrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~ 541 (606)
|++.+..+.+...... +|...|.+++|+|.+.+++..++.+..|+|.|+++ ...+.++..+.++++++
T Consensus 175 v~~l~~~~fkssq~lp--~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet----------~~~vssy~a~~~~wSC~ 242 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP--GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET----------SCVVSSYIAYNQIWSCC 242 (463)
T ss_pred eEEeccCCcchhhccc--ccchhhhhhccCccccceeeeeccCceEEEEeccc----------ceeeeheeccCCceeee
Confidence 6777766555544333 78889999999998888999999999999999998 45677787788999999
Q ss_pred EccCC-CEEEEEeCCCcEEEEECCCCc
Q 035500 542 VNSTD-DQFLASGYSKNVALYDINTEK 567 (606)
Q Consensus 542 ~sp~g-~~LaSgs~Dg~I~IWDlrt~k 567 (606)
|.-+. +.+.+|-..|.|.+||+|..+
T Consensus 243 wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 243 WDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCCcceeEEeccCceEEEEEccCCC
Confidence 99887 577788888999999999653
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00089 Score=69.15 Aligned_cols=163 Identities=14% Similarity=0.236 Sum_probs=107.8
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEE---EeccCCC------------CCEEEEEEeeC-CCCEEEEEE
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACY---IPSIGGT------------NSVLGLCWLKK-YPSKLVAGS 502 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~---~~~~gH~------------~~V~~L~fsp~-~~~~LaSgS 502 (606)
+++++.|.. .|.++|+|...|+|.+|.-+...-..+ -++.+|. ..|..+.|... +-..++-.+
T Consensus 28 ~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 28 KITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred eeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 377889988 889999999999999998654331111 0122332 45888999653 334577778
Q ss_pred CCCeEEEEeCCCCCCCc-----------ccccC---------------------CcceEEee--cCCCeEEEEEccCCCE
Q 035500 503 DSGCVRLFDLNHIPPKV-----------ADARG---------------------NSSVATYY--DFEQLTSVHVNSTDDQ 548 (606)
Q Consensus 503 ~DgtIklWDl~~~~~~~-----------~~l~~---------------------~~~i~t~~--~~~~V~sV~~sp~g~~ 548 (606)
.|.+|++|.+......+ .++.+ ..|.+.+. |..-+++++++.+.+.
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 89999999987531100 00000 01222221 2333899999988888
Q ss_pred EEEEeCCCcEEEEECCCCce---eEEEcCCC-----CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 549 FLASGYSKNVALYDINTEKP---LQLFTDMH-----REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 549 LaSgs~Dg~I~IWDlrt~k~---v~~l~~gH-----~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++++ +|-.|.+|.+.-... +..++ +| +.-|++..|+|....++.-++..|.|+.
T Consensus 187 ~lSa-DdLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 187 LLSA-DDLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred eeec-cceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 8776 457899998874322 22333 34 3568999999999888998999998874
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.012 Score=62.99 Aligned_cols=159 Identities=13% Similarity=0.131 Sum_probs=99.3
Q ss_pred eeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCc--eEE--EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGT-LDGEVIVINHENGN--VAC--YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-~DGtVrIWDi~tg~--~v~--~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
+.++.|+| +++++++.. ....|++|++.... ... .+.. .....-..++|+|++....+..-.+++|.++++..
T Consensus 146 ~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 146 PHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp EEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence 66888999 888777754 34579999987644 322 2222 34456789999995433446666788999999883
Q ss_pred CCCCcccccCCcceEEe----ecCCCeEEEEEccCCCEEEEEe-CCCcEEEEECC--CCce--eEEEcCCCCCCeEEEEE
Q 035500 515 IPPKVADARGNSSVATY----YDFEQLTSVHVNSTDDQFLASG-YSKNVALYDIN--TEKP--LQLFTDMHREPINVAKF 585 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~----~~~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlr--t~k~--v~~l~~gH~~~I~sV~f 585 (606)
....... ...+.++ .+......|+++|+|++++++. .++.|.+|++. +++. +..+. .....-+.+++
T Consensus 224 ~~g~~~~---~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~ 299 (345)
T PF10282_consen 224 SDGSLTE---IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAF 299 (345)
T ss_dssp TTTEEEE---EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE
T ss_pred cCCceeE---EEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEE
Confidence 2111000 0011111 1123578999999999766664 56889999994 3443 33443 12345789999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|+|.++++++..++.|.+
T Consensus 300 s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp -TTSSEEEEEETTTTEEEE
T ss_pred eCCCCEEEEEecCCCeEEE
Confidence 9999998888877777764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.014 Score=63.39 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=105.5
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC-eEEEEeCCCCCCCccccc
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG-CVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg-tIklWDl~~~~~~~~~l~ 523 (606)
|++.+|+++|..|. |+..|.+...+-.++ .+|.+.|.-..+.. ++..++-|..|| .+-++|..++.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq----v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e------- 393 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ----VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE------- 393 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE----cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-------
Confidence 66678999999885 667787766555544 27888898888876 445788999999 99999999842
Q ss_pred CCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCe
Q 035500 524 GNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 524 ~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
+..+. .-+.|.++..+|+|+.++.+-....+-++|+.++++...-+ ...+-|+...|||+++| +|-+=-+|.
T Consensus 394 ----~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~nsr~-iAYafP~gy 466 (668)
T COG4946 394 ----VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHPNSRW-IAYAFPEGY 466 (668)
T ss_pred ----EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcCCcee-EEEecCcce
Confidence 23333 45669999999999999999888899999999998754333 45678999999999997 554444443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=4.6e-05 Score=84.66 Aligned_cols=149 Identities=17% Similarity=0.262 Sum_probs=102.8
Q ss_pred eeEEEEcCCCCCEEEEEeC----CCcEEEEECCCC--ceEEEEeccC-CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTL----DGEVIVINHENG--NVACYIPSIG-GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~----DGtVrIWDi~tg--~~v~~~~~~g-H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
.++++|++-|.++||+|-. |..+.|||+.++ .+.....+.+ --.....++|.. +..++.+|.....++++|+
T Consensus 105 Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdl 183 (783)
T KOG1008|consen 105 CTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDL 183 (783)
T ss_pred ccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhh
Confidence 6789999988899998853 567899999876 2222222222 334456899984 7788999999999999999
Q ss_pred CCCCCCcccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE-CCCC-ceeEEEc---CCCCCCeEEEEEe
Q 035500 513 NHIPPKVADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYSKNVALYD-INTE-KPLQLFT---DMHREPINVAKFS 586 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWD-lrt~-k~v~~l~---~gH~~~I~sV~fs 586 (606)
+..... ...+ ....+..+.+.| .++++++-. ||.|.+|| .++- ++++.+. ......+..++|.
T Consensus 184 Rqs~~~------~~sv----nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc 252 (783)
T KOG1008|consen 184 RQSLDS------VSSV----NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC 252 (783)
T ss_pred hhhhhh------hhhh----hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence 953211 0011 112366777888 578888776 89999999 4443 3333333 1122349999999
Q ss_pred CCCCeEEEEEeCCC
Q 035500 587 HHSPLCLLLLHLTT 600 (606)
Q Consensus 587 P~g~~LLaTgS~Dg 600 (606)
|..+.++++.+.|.
T Consensus 253 Ptrtglla~l~RdS 266 (783)
T KOG1008|consen 253 PTRTGLLAVLSRDS 266 (783)
T ss_pred cCCcchhhhhccCc
Confidence 99988899988885
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.032 Score=59.01 Aligned_cols=169 Identities=11% Similarity=0.053 Sum_probs=110.6
Q ss_pred ceeeecccccccCceeeceeEEEEcCCCCCEEEEEeC-CCcEEEEECCC-CceEEEEeccCCCCC----------EEEEE
Q 035500 422 HPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTL-DGEVIVINHEN-GNVACYIPSIGGTNS----------VLGLC 489 (606)
Q Consensus 422 ~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~-DGtVrIWDi~t-g~~v~~~~~~gH~~~----------V~~L~ 489 (606)
+.+....+....|.. ...+++++ ++++++++.. -|.|.|+-++. |..........|.++ +....
T Consensus 76 G~Lt~ln~~~~~g~~---p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 76 GRLTFLNRQTLPGSP---PCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred CeEEEeeccccCCCC---CeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 344433344444542 24678999 8888888875 58999999865 666555555567666 88999
Q ss_pred EeeCCCCEEEEEE--CCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCC
Q 035500 490 WLKKYPSKLVAGS--DSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY-SKNVALYDINTE 566 (606)
Q Consensus 490 fsp~~~~~LaSgS--~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt~ 566 (606)
+.| ++++++++. .| .|.+|++..+... ......++....-..|.|||++++.....+ +++|.+|.....
T Consensus 152 ~tP-~~~~l~v~DLG~D-ri~~y~~~dg~L~------~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 152 FTP-DGRYLVVPDLGTD-RIFLYDLDDGKLT------PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred eCC-CCCEEEEeecCCc-eEEEEEcccCccc------cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 999 557777763 45 6889999864321 111112233444688999999998777664 799999999873
Q ss_pred --ce-----eEEEcCC--CCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 567 --KP-----LQLFTDM--HREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 567 --k~-----v~~l~~g--H~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
+. +.+++.. -....-+|..+|+|+++.|+-=....|
T Consensus 224 ~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 224 VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 21 2222221 134567788999999887764443333
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.035 Score=59.38 Aligned_cols=157 Identities=14% Similarity=0.104 Sum_probs=101.9
Q ss_pred eeEEEEcCCCCCEEEEEeC----CCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTL----DGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~----DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl 512 (606)
+..++++| ++++|.+++. +|.|..|.+.. +.....-...........++.+| ++.+++++. .+|+|.++++
T Consensus 39 Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 39 PSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp ECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred CceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEc
Confidence 66789999 8888888876 57999998775 34332212111234566788998 556766665 5999999999
Q ss_pred CCCCCCcccccCCcceEEeec-----------CCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCc--e--eEEEcCCC
Q 035500 513 NHIPPKVADARGNSSVATYYD-----------FEQLTSVHVNSTDDQFLASG-YSKNVALYDINTEK--P--LQLFTDMH 576 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~-----------~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k--~--v~~l~~gH 576 (606)
...... ......+.+ .....++.++|+++++++.. ....|.+|++.... . ...+....
T Consensus 117 ~~~g~l------~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~ 190 (345)
T PF10282_consen 117 DDDGSL------GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP 190 (345)
T ss_dssp CTTSEE------EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred cCCccc------ceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence 874211 111112211 12278999999999777764 33589999998654 3 22333234
Q ss_pred CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 577 REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 577 ~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
...-+.+.|+|++++++++.-.+++|..
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred CCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence 5677899999999999888888877653
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.013 Score=63.77 Aligned_cols=136 Identities=14% Similarity=0.114 Sum_probs=99.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCC-cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG-EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG-tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|+-..+.- +++-++.|..|| .+-|+|..+++..... +.-+.|.++..++ ++.+++.+-....+-+.|+.++..
T Consensus 362 VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e---~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv- 435 (668)
T COG4946 362 VRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIE---KDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV- 435 (668)
T ss_pred eEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEee---CCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe-
Confidence 45455555 667889999999 8999999988765432 5567899999998 667788888888888888888532
Q ss_pred cccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCC----CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 519 VADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYS----KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 519 ~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~D----g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
+... ...-|+...|||++.++|-+--+ ..|++||+..++....-. -...=.+-+|.|++.++
T Consensus 436 ----------~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 436 ----------RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYL 503 (668)
T ss_pred ----------eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCcEE
Confidence 2222 23449999999999999988655 469999999888754433 12333456788888875
Q ss_pred E
Q 035500 593 L 593 (606)
Q Consensus 593 L 593 (606)
.
T Consensus 504 Y 504 (668)
T COG4946 504 Y 504 (668)
T ss_pred E
Confidence 4
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0023 Score=73.09 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=96.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++|++++ +.+++.|+-+|.|++++.... .... ..|... . ..|.+++|||.||+|.|-.+-+.
T Consensus 42 is~~av~---~~~~~~GtH~g~v~~~~~~~~-~~~~---~~~s~~------~-~~Gey~asCS~DGkv~I~sl~~~---- 103 (846)
T KOG2066|consen 42 ISCCAVH---DKFFALGTHRGAVYLTTCQGN-PKTN---FDHSSS------I-LEGEYVASCSDDGKVVIGSLFTD---- 103 (846)
T ss_pred HHHHHhh---cceeeeccccceEEEEecCCc-cccc---cccccc------c-cCCceEEEecCCCcEEEeeccCC----
Confidence 4455664 479999999999999998743 2221 144333 2 46789999999999999888773
Q ss_pred ccccCCcceEEeecCCCeEEEEEccC-----CCEEEEEeCCCcEEEEECCC-CceeE-EEcCCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNST-----DDQFLASGYSKNVALYDINT-EKPLQ-LFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~-----g~~LaSgs~Dg~I~IWDlrt-~k~v~-~l~~gH~~~I~sV~fsP~g~~L 592 (606)
....++..+.++.+|+++|+ .+.|++||.-| +.++.-+- |+... .+. .-.++|.+++|. |. +
T Consensus 104 ------~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-~~eG~I~~i~W~--g~-l 172 (846)
T KOG2066|consen 104 ------DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-EGEGPIHSIKWR--GN-L 172 (846)
T ss_pred ------ccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-cCccceEEEEec--Cc-E
Confidence 34567788899999999998 46999999988 77765442 22211 333 356899999996 33 6
Q ss_pred EEEEeCCCeE
Q 035500 593 LLLLHLTTMS 602 (606)
Q Consensus 593 LaTgS~DgtI 602 (606)
+|=++.+|+-
T Consensus 173 IAWand~Gv~ 182 (846)
T KOG2066|consen 173 IAWANDDGVK 182 (846)
T ss_pred EEEecCCCcE
Confidence 7777777754
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0034 Score=71.47 Aligned_cols=145 Identities=15% Similarity=0.185 Sum_probs=105.8
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-----------CCEEEEEECCCeEEEE
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-----------PSKLVAGSDSGCVRLF 510 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-----------~~~LaSgS~DgtIklW 510 (606)
++.|+| .| ++|-|+. ..|.|-|..+-+.+..++ -|...|+.+.|.|.. .-+++++-..|.|.+|
T Consensus 20 A~Dw~~-~G-LiAygsh-slV~VVDs~s~q~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 20 AADWSP-SG-LIAYGSH-SLVSVVDSRSLQLIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred ccccCc-cc-eEEEecC-ceEEEEehhhhhhhhccc--cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 467888 44 7877775 458899988888877776 788999999998732 1247788889999999
Q ss_pred eCCCCCCCcccccCCcceEEeec-CCCeEEEEEccC---C-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 511 DLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNST---D-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~---g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
|+... ..+.-+.+ .+++.+++|-|. + ..+++-....++-+|+..+|+.+.....+ .....|+.+
T Consensus 95 d~~~~----------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f~~ 163 (1062)
T KOG1912|consen 95 DFVLA----------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEILSCFRV 163 (1062)
T ss_pred Eehhh----------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-Ccceeeeee
Confidence 99884 22334444 456888888764 3 46777777789999999999999888854 367778999
Q ss_pred eCCCCeEEEEEeCCCeE
Q 035500 586 SHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtI 602 (606)
.|.+..-+..-+..|.+
T Consensus 164 DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 164 DPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred CCCCcceEEEEccCceE
Confidence 99765445444444443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.018 Score=62.04 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=73.5
Q ss_pred CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE---------CCCeEEEEeCCCCCCCcccccCCcceEE
Q 035500 460 GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS---------DSGCVRLFDLNHIPPKVADARGNSSVAT 530 (606)
Q Consensus 460 GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS---------~DgtIklWDl~~~~~~~~~l~~~~~i~t 530 (606)
++|.|.|..+++.+..+.. |.... .+ ++|++....++.+ .+..|.+||..+.+ .+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~-G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~----------~~~~ 92 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG-GFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL----------PIAD 92 (352)
T ss_pred ceEEEEECCCCEEEEEEEc-cCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc----------EEeE
Confidence 8999999999999888773 33222 34 8885544555556 68999999999843 3433
Q ss_pred eec--------CCCeEEEEEccCCCEEEEEe-C-CCcEEEEECCCCceeEEEcC
Q 035500 531 YYD--------FEQLTSVHVNSTDDQFLASG-Y-SKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 531 ~~~--------~~~V~sV~~sp~g~~LaSgs-~-Dg~I~IWDlrt~k~v~~l~~ 574 (606)
+.. ...-...+++|+|++++... . +..|.+.|+.+++.+.++.-
T Consensus 93 i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 93 IELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred EccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 332 11234678899999888665 3 79999999999999888873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0028 Score=73.31 Aligned_cols=140 Identities=12% Similarity=0.103 Sum_probs=103.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC---------CCeEEEEeCCCCCCC
Q 035500 448 SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD---------SGCVRLFDLNHIPPK 518 (606)
Q Consensus 448 ~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~---------DgtIklWDl~~~~~~ 518 (606)
.++.++.+|...|+|.+-|.++.+.+.++. .|.+.|.++... +++|+|||. |..|+|||++....
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~--aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra- 258 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFD--AHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA- 258 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeee--ccccceeeeecc---CCeEEEeecccccccccccchhhhhhhhhhhc-
Confidence 477899999999999999999999988776 999999887654 478999874 66889999998643
Q ss_pred cccccCCcceEEeecCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCC-Cce---eEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNST-DDQFLASGYSKNVALYDINT-EKP---LQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlrt-~k~---v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
-.|+ ..+..-.-+.|+|. ...++.++..|...+-|..+ +++ +..+. ...+.+....+++.+. .+
T Consensus 259 ------l~PI---~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~-al 327 (1118)
T KOG1275|consen 259 ------LSPI---QFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN-PNGSGISAFDISSNGD-AL 327 (1118)
T ss_pred ------cCCc---ccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEc-cCCCcceeEEecCCCc-eE
Confidence 1222 11111245678887 46888888889999999432 222 23333 4566799999999998 58
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
|-|..+|.|..
T Consensus 328 afgd~~g~v~~ 338 (1118)
T KOG1275|consen 328 AFGDHEGHVNL 338 (1118)
T ss_pred EEecccCcEee
Confidence 88888887753
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00026 Score=77.65 Aligned_cols=125 Identities=22% Similarity=0.244 Sum_probs=70.8
Q ss_pred eEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHH--hhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAA--ISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~--l~~~~~l~~l~~ 205 (606)
++|||++|+|.+++.+..+..|+.|++. .|.|+.+.. |+.+++|..|.+..|+|..+ .- +..+.+|.+|..
T Consensus 121 ~~L~ls~N~I~~i~~l~~l~~L~~L~l~-~N~i~~~~~--~~~l~~L~~l~l~~n~i~~i----e~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 121 QVLDLSFNKITKLEGLSTLTLLKELNLS-GNLISDISG--LESLKSLKLLDLSYNRIVDI----ENDELSELISLEELDL 193 (414)
T ss_pred hheeccccccccccchhhccchhhheec-cCcchhccC--CccchhhhcccCCcchhhhh----hhhhhhhccchHHHhc
Confidence 4566666666666666666666666666 666666654 55666666666666666655 44 466666666651
Q ss_pred ceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchh----hhcccchhhh--hccCCCCCCCcce
Q 035500 206 QMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPK----YLRTMNLMEL--SSCLSPNLNGHAE 279 (606)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--l~~~~~~~~~~~~ 279 (606)
-+ ..-..++.-+-...+ -..+..+ ++++.+.+.. |+.+++..|++-+
T Consensus 194 ~~------------------------n~i~~i~~~~~~~~l---~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 194 GG------------------------NSIREIEGLDLLKKL---VLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred cC------------------------CchhcccchHHHHHH---HHhhcccccceeccCcccchhHHHHHHhcccCcccc
Confidence 11 000001100000000 0112222 7777777777 8888899999988
Q ss_pred ecccccC
Q 035500 280 MLDEVND 286 (606)
Q Consensus 280 ~~~~~~~ 286 (606)
+.++++.
T Consensus 247 ~~~~~~~ 253 (414)
T KOG0531|consen 247 SPEGLEN 253 (414)
T ss_pred ccccccc
Confidence 8644444
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0081 Score=63.02 Aligned_cols=160 Identities=10% Similarity=0.125 Sum_probs=114.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC-CC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH-IP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~-~~ 516 (606)
++++++++ +...|+.|-.+|+|.=+-... .+....-....|...|..+.|+. .+.++++++.|..+. |.... +.
T Consensus 71 ~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~-~hc~e~~~ 147 (404)
T KOG1409|consen 71 CSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFA-WHCTESGN 147 (404)
T ss_pred ceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceE-EEeeccCC
Confidence 77889998 888999999999998887543 12111112347899999999985 668899999998764 54332 21
Q ss_pred CCc--------ccc-----------------------cCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 035500 517 PKV--------ADA-----------------------RGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDIN 564 (606)
Q Consensus 517 ~~~--------~~l-----------------------~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr 564 (606)
... +.+ ..-.++.++.++ ..+.+.+|.|....+++|..|..+.+||+-
T Consensus 148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 100 000 112345566654 569999999999999999999999999998
Q ss_pred CCcee-EEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 565 TEKPL-QLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 565 t~k~v-~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
-.+-+ .++. +|...|..+..-+.-. .+.+++.||.|-|
T Consensus 228 g~~g~~~el~-gh~~kV~~l~~~~~t~-~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 228 GRKGTAYELQ-GHNDKVQALSYAQHTR-QLISCGEDGGIVV 266 (404)
T ss_pred CCcceeeeec-cchhhhhhhhhhhhhe-eeeeccCCCeEEE
Confidence 65554 4444 8999999988877655 4778888987764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.015 Score=64.23 Aligned_cols=142 Identities=10% Similarity=0.060 Sum_probs=83.0
Q ss_pred eEEEEcCCCCCEEEEE-eCC--CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC--eEEEEeCCCC
Q 035500 441 RQFEYNPSNPSLMAFG-TLD--GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG--CVRLFDLNHI 515 (606)
Q Consensus 441 ~slafsP~dg~~LaSG-s~D--GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg--tIklWDl~~~ 515 (606)
....|+| ||+.++.. +.+ ..|.++|..++.... +. .+........|+|++...+++....+ .|.+.|+.++
T Consensus 236 ~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT--~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 236 VVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-IT--NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred EeeEECC-CCCEEEEEEccCCCcEEEEEECCCCcEEE-cc--cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3457999 88766654 333 567777887776543 22 33333345679995444444444444 4666666653
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC---------CcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS---------KNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D---------g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
.. ...++.+.. ...|+|+|+.++..+.. ..|.+.|+.++... .+..+ .......|+
T Consensus 312 ~~---------~rlt~~g~~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~--~~~~~p~~S 376 (419)
T PRK04043 312 SV---------EQVVFHGKN---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN--GVNQFPRFS 376 (419)
T ss_pred Ce---------EeCccCCCc---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC--CCcCCeEEC
Confidence 21 011222221 24899999977766543 36888898887653 34322 223358899
Q ss_pred CCCCeEEEEEeCCCe
Q 035500 587 HHSPLCLLLLHLTTM 601 (606)
Q Consensus 587 P~g~~LLaTgS~Dgt 601 (606)
|+|..++.+....+.
T Consensus 377 PDG~~I~f~~~~~~~ 391 (419)
T PRK04043 377 SDGGSIMFIKYLGNQ 391 (419)
T ss_pred CCCCEEEEEEccCCc
Confidence 999987766554443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00045 Score=51.58 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=33.9
Q ss_pred ccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhc
Q 035500 147 MHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISK 196 (606)
Q Consensus 147 ~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~ 196 (606)
++|++|.|. .|.|+.|+. -++.||+|+.|++.+|+|.++ ++|+|
T Consensus 1 ~~L~~L~l~-~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i----~~l~~ 44 (44)
T PF12799_consen 1 KNLEELDLS-NNQITDLPP-ELSNLPNLETLNLSNNPISDI----SPLSN 44 (44)
T ss_dssp TT-SEEEET-SSS-SSHGG-HGTTCTTSSEEEETSSCCSBE----GGGTT
T ss_pred CcceEEEcc-CCCCcccCc-hHhCCCCCCEEEecCCCCCCC----cCCCC
Confidence 478899999 889999975 388999999999999998876 55543
|
... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.057 Score=55.61 Aligned_cols=155 Identities=16% Similarity=0.291 Sum_probs=97.9
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec----c-CCCCCEEEEEEeeCC-----CCEEEEEECCCeEEEE
Q 035500 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS----I-GGTNSVLGLCWLKKY-----PSKLVAGSDSGCVRLF 510 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~----~-gH~~~V~~L~fsp~~-----~~~LaSgS~DgtIklW 510 (606)
+-++||| |+.++|.+...|+|+|||+.... ...++- . .-..+|.++.|.+.. ...|+.-..+|.++-+
T Consensus 47 Rkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 47 RKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred eEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4678999 99999999999999999987433 222221 0 123567788886432 2347777888888877
Q ss_pred eCCCCCCCcccccCCcceE--Eeec--CCCeEEEEEccCCCEEEEEeCC-C----------cEEEEECCCCcee------
Q 035500 511 DLNHIPPKVADARGNSSVA--TYYD--FEQLTSVHVNSTDDQFLASGYS-K----------NVALYDINTEKPL------ 569 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~--t~~~--~~~V~sV~~sp~g~~LaSgs~D-g----------~I~IWDlrt~k~v------ 569 (606)
-+..+... +..... .+.. ...|+++.++|..++++.||.. . -+.-|-+-++.|-
T Consensus 125 ~vs~gt~q-----~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~ 199 (282)
T PF15492_consen 125 LVSVGTNQ-----GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTS 199 (282)
T ss_pred EEEcccCC-----cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccc
Confidence 76432110 011222 3332 3559999999998877777542 1 2444533332110
Q ss_pred --------------------EEE--cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 570 --------------------QLF--TDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 570 --------------------~~l--~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
..+ .......|..|..+|+|. +||+.+.+|.+-
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~ls 254 (282)
T PF15492_consen 200 SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLS 254 (282)
T ss_pred cCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEE
Confidence 000 112357899999999998 688999998774
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.029 Score=68.82 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=100.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCC------------CCCEEEEEEeeCCCCEEEEEECCCeE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGG------------TNSVLGLCWLKKYPSKLVAGSDSGCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH------------~~~V~~L~fsp~~~~~LaSgS~DgtI 507 (606)
+..+++++.++.+.++-+.+++|++||.. +..+..+...+. -....+++++++++..+++-+..+.|
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 45678988677788888899999999976 444433321111 12357899998443345555667789
Q ss_pred EEEeCCCCCCCcccccCC-cceEEeec--------CCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCceeEEEcC---
Q 035500 508 RLFDLNHIPPKVADARGN-SSVATYYD--------FEQLTSVHVNST-DDQFLASGYSKNVALYDINTEKPLQLFTD--- 574 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~-~~i~t~~~--------~~~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~--- 574 (606)
+.+|..++.. ..+.+. .....+.+ -..-+.|+++|+ +.++++.+.++.|++||..++.....-..
T Consensus 649 r~id~~~~~V--~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETV--RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEecCCCEE--EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 9999876321 000000 00000000 112357999995 56777878889999999987754211110
Q ss_pred ----CC------CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 575 ----MH------REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 575 ----gH------~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++ -...+.++|+|++.+++++.+.++.||.
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv 766 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRA 766 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEE
Confidence 11 1234679999999988888888888875
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00065 Score=74.32 Aligned_cols=124 Identities=9% Similarity=0.093 Sum_probs=83.9
Q ss_pred EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEe
Q 035500 475 YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASG 553 (606)
Q Consensus 475 ~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs 553 (606)
...+.||...|..++-.. +.+.++|+|.|++|++|.++..... .....+..++. |+.+|.++.|-.+-..++++
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~---~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDE---IGTSACQFTYQAHKKPIHDIGFLADLRSIASC- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCc---cccceeeeEhhhccCcccceeeeeccceeeec-
Confidence 334679998888887653 6778999999999999999874321 11244666777 56779999998777777654
Q ss_pred CCCcEEEEECCCCceeEEEcCC-CCCCeEEEEEeCC--CCeEEEEEeCCCeEEE
Q 035500 554 YSKNVALYDINTEKPLQLFTDM-HREPINVAKFSHH--SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 554 ~Dg~I~IWDlrt~k~v~~l~~g-H~~~I~sV~fsP~--g~~LLaTgS~DgtIRc 604 (606)
||.|.+||.-.++++..+.++ ..+.+..++--|. ...++|.++...+|+.
T Consensus 803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl 855 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKL 855 (1034)
T ss_pred -cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhee
Confidence 688999999988886644432 2244444444333 3333444466666654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.04 Score=59.36 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=97.1
Q ss_pred eeEEEEcCCCCCEEEEEe-C-CCcEEEEECCCCceEEEEeccC--------------C--CC-------------CEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGT-L-DGEVIVINHENGNVACYIPSIG--------------G--TN-------------SVLGL 488 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-~-DGtVrIWDi~tg~~v~~~~~~g--------------H--~~-------------~V~~L 488 (606)
...++++| +|++++... . +..|-|.|+.+++.+..+..-+ | ++ .+...
T Consensus 107 ~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~ 185 (352)
T TIGR02658 107 PWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPT 185 (352)
T ss_pred cceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeee
Confidence 44788999 998888776 3 7899999999988877554211 0 00 01111
Q ss_pred E--------------EeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec--------CCCeEEEEEccCC
Q 035500 489 C--------------WLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD--------FEQLTSVHVNSTD 546 (606)
Q Consensus 489 ~--------------fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~--------~~~V~sV~~sp~g 546 (606)
. |.+.++.+++.... |+|.+-|+....... ..++..+.. ...+.-++++|++
T Consensus 186 ~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~-----~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 186 EVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF-----LPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred eeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee-----cceeeeccccccccccCCCcceeEEEcCCC
Confidence 1 12213344433333 888888865432110 112222211 1224459999999
Q ss_pred CEEEEEe----------CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC-eEEEEEeCCCeEE
Q 035500 547 DQFLASG----------YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP-LCLLLLHLTTMSR 603 (606)
Q Consensus 547 ~~LaSgs----------~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~-~LLaTgS~DgtIR 603 (606)
+.++... ..+.|.++|..+++.+..+.- ...+..++++|+++ .++++...++.|.
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEE
Confidence 8666532 225899999999999998884 45899999999999 7777776677654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00026 Score=76.33 Aligned_cols=121 Identities=25% Similarity=0.315 Sum_probs=98.1
Q ss_pred eccCCCcccchhHHHHHHHHhhccceEEEccCc-cccchHHH-hhccCCCceeEEEccccchhccc---cccccccccEE
Q 035500 78 ILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNI-TLRNDNLL-DLCQVGSSCHVLILRATNIRKLN---MVGRFMHLNTL 152 (606)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~l~tl 152 (606)
.++=++|.|.|.-++.++-.+= -|.+++|+.| ..++...+ +..|+ =|.|||++|.+.-+. ..|.|++|..|
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fP-sl~~L~L~~N~~~~~~~~~~~i~~~---L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFP-SLEVLYLEANEIILIKATSTKILQT---LQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCC-cHHHhhhhcccccceecchhhhhhH---HhhccccCCcccccccccccccccchhhh
Confidence 3567899999999999988774 4778899887 33333332 22221 367999999999887 66799999999
Q ss_pred ecccCCCcccccc-cc-----cccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 153 SLDFCSSLASLHE-DC-----FSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 153 ~l~~~~~~~~~~~-~~-----~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
|+. ++.|++|.+ || -.-+|+|+.|.+..|.|. =|..+..|.+|++|+.|+
T Consensus 277 nls-~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 277 NLS-STGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLR 332 (505)
T ss_pred hcc-ccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhh
Confidence 999 999999976 44 345999999999999988 599999999999999999
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0047 Score=68.14 Aligned_cols=136 Identities=13% Similarity=0.033 Sum_probs=94.0
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-----------CCeEEEE
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-----------SGCVRLF 510 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-----------DgtIklW 510 (606)
-+.||| .|.||+|-..-| |.+|-=++-..+..+ .|. .|.-+.|+| +..+|+|-|. -..+.||
T Consensus 215 yv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r~~RF---~Hp-~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 215 YVRWSP-KGTYLVTFHKQG-IALWGGESFDRIQRF---YHP-GVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eEEecC-CceEEEEEeccc-eeeecCccHHHHHhc---cCC-CceeeecCC-ccceEEEecCCccccCcccCCCceEEEE
Confidence 467999 999999999988 889975554444333 454 688899999 7789998753 2578999
Q ss_pred eCCCCCCCcccccCCcceEEeecCCCe-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 511 DLNHIPPKVADARGNSSVATYYDFEQL-TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~~~~V-~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
|+.++.. ......++....+ .-..||.++.++|--.. ..|.||+..+-.++..-. ..-+.|....|+|.+
T Consensus 288 DI~tG~l-------krsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-lki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 288 DIATGLL-------KRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-LKISGIRDFSWSPTS 358 (698)
T ss_pred Eccccch-------hcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-cCCccccCcccCCCc
Confidence 9999642 1222222333333 34689999999987776 679999887644432222 235678888899987
Q ss_pred CeEEE
Q 035500 590 PLCLL 594 (606)
Q Consensus 590 ~~LLa 594 (606)
. ++|
T Consensus 359 ~-llA 362 (698)
T KOG2314|consen 359 N-LLA 362 (698)
T ss_pred c-eEE
Confidence 6 454
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0016 Score=67.73 Aligned_cols=107 Identities=20% Similarity=0.141 Sum_probs=64.4
Q ss_pred hccceEEEccCccccc---hHHHhhccCCCceeEEEccccchhcc------cccccc-ccccEEecccCCCcc-----cc
Q 035500 99 DQKLRVVDLSNITLRN---DNLLDLCQVGSSCHVLILRATNIRKL------NMVGRF-MHLNTLSLDFCSSLA-----SL 163 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~-~~l~tl~l~~~~~~~-----~~ 163 (606)
+.+|+.++|+++.+.. ..+..+.+. ..-+.|+|+.|++..- ..++.+ .+|..|.|. .+.++ .+
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~-~n~l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG-RNRLEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC-CCcCCchHHHHH
Confidence 5677777777777753 334444444 5577777777776521 123455 677777777 55565 22
Q ss_pred cccccccCccccEEEcccccccch-hh-hhHHhhcCCchhhhhhcee
Q 035500 164 HEDCFSCMPYLMCLSMCETRIVNL-WT-TTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 164 ~~~~~~~~p~l~~l~~~~~~~~~l-~~-~~~~l~~~~~l~~l~~~~~ 208 (606)
. ..|..+++|+.|.|.+|.+..- .. -.+++.++++|++|.+.+|
T Consensus 158 ~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 158 A-KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred H-HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 2 3466667778888777776631 11 1235566677777776554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.085 Score=53.24 Aligned_cols=144 Identities=14% Similarity=0.141 Sum_probs=95.8
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccc
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVAD 521 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~ 521 (606)
+..|.+.++.++++--..++|..|+..++.... +... ...++++...+ ..++.+..++ +.++|..++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~----~~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~----- 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP----GPNGMAFDRPD-GRLYVADSGG-IAVVDPDTGK----- 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS----SEEEEEEECTT-SEEEEEETTC-EEEEETTTTE-----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC----CCceEEEEccC-CEEEEEEcCc-eEEEecCCCc-----
Confidence 456998777788887789999999998876543 3321 27788888424 5666666655 4555887742
Q ss_pred ccCCcceEEee-c---CCCeEEEEEccCCCEEEEEeCC--------CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 522 ARGNSSVATYY-D---FEQLTSVHVNSTDDQFLASGYS--------KNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 522 l~~~~~i~t~~-~---~~~V~sV~~sp~g~~LaSgs~D--------g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
...+.... . ....+++++.|+|++.++.... |.|..++.. ++...... .-...+.++|+|++
T Consensus 72 ---~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 72 ---VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDG 145 (246)
T ss_dssp ---EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTS
T ss_pred ---EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcc
Confidence 12233332 1 2338899999999988877654 457778877 55444443 34667899999999
Q ss_pred CeEEEEEeCCCeEE
Q 035500 590 PLCLLLLHLTTMSR 603 (606)
Q Consensus 590 ~~LLaTgS~DgtIR 603 (606)
+.++++-+..+.|.
T Consensus 146 ~~lyv~ds~~~~i~ 159 (246)
T PF08450_consen 146 KTLYVADSFNGRIW 159 (246)
T ss_dssp SEEEEEETTTTEEE
T ss_pred hheeecccccceeE
Confidence 98888877766553
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00078 Score=81.46 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=62.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhc-c-ccccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRK-L-NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l-~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+||.++|+++.+-...- .-.- ..=++|+|++|++.. + +.++.+.+|.+|+|. .|.++..-.+.|..|++|+.|
T Consensus 118 ~~L~~L~Ls~n~l~~~~p-~~~l--~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIP-RGSI--PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG-GNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred CCCCEEECcCCccccccC-cccc--CCCCEEECcCCcccccCChHHhcCCCCCEEECc-cCcccccCChhhhhCcCCCee
Confidence 578888888876531100 0011 123568888887752 2 246677788888887 566655444557778888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+.+|++... .-..+.++++|++|.+..
T Consensus 194 ~L~~n~l~~~--~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 194 TLASNQLVGQ--IPRELGQMKSLKWIYLGY 221 (968)
T ss_pred eccCCCCcCc--CChHHcCcCCccEEECcC
Confidence 8877766432 124566677777776554
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00058 Score=78.32 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=98.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC-eEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG-CVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg-tIklWDl~~~~~~ 518 (606)
-+|++|+- +.++++.|+..|.|++|++.+|....... +|.++|+.+.-+.+++..|.+++... -..+|+....
T Consensus 1104 fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~n--cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--- 1177 (1516)
T KOG1832|consen 1104 FTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVN--CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--- 1177 (1516)
T ss_pred eeeEEeec-CCceEEeeeccceEEEEEccCcccccccc--ccccccccccccCCcceeeeeccccCchHHHhccccc---
Confidence 56889998 88999999999999999999999887655 99999999998875544555555544 5679998873
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC---CCCCeEEEEEeCCCCeEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM---HREPINVAKFSHHSPLCL 593 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g---H~~~I~sV~fsP~g~~LL 593 (606)
..+..+|... .++.|+.....=+.|..-..+.+||+.++.++.++-.+ ..-.=+++.|+|....+|
T Consensus 1178 ------~~~~Hsf~ed---~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1178 ------GGPRHSFDED---KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ------cCcccccccc---ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 3345555443 45667655433333444456889999999886653211 122236788999887544
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.014 Score=68.54 Aligned_cols=147 Identities=11% Similarity=0.095 Sum_probs=96.8
Q ss_pred EcCCCCCEEEEE-eCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEee----CCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 445 YNPSNPSLMAFG-TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLK----KYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 445 fsP~dg~~LaSG-s~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp----~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
.+-++.+.|... .....++-.|++.|+.+..+.. ....+|..++-.. ..+..-+.|-.+..+..||.|......
T Consensus 488 L~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~-~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 488 LHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKV-HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred hhccccceEeecCCCCCceEEEecCCCcEEEEeec-CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 344455555554 3457899999999999998874 2234466665321 123445667788899999999742100
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
. ......+..+....+++-. .+.++|.||.+|.||+||--..+.-..++ +-..+|..|..+.+|.|+||||-.
T Consensus 567 --v--~~~~k~Y~~~~~Fs~~aTt-~~G~iavgs~~G~IRLyd~~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 567 --V--DSQSKQYSSKNNFSCFATT-EDGYIAVGSNKGDIRLYDRLGKRAKTALP-GLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred --e--eccccccccCCCceEEEec-CCceEEEEeCCCcEEeecccchhhhhcCC-CCCCCeeEEEecCCCcEEEEeecc
Confidence 0 0011233344556777554 34689999999999999943333344455 667999999999999999998753
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.022 Score=61.21 Aligned_cols=134 Identities=12% Similarity=0.005 Sum_probs=87.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
++.+.+++.+|.++.||.++|+.+....... ...... .+..++.++.||.+..+|..+++. +-
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~----------~W 303 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPAV---DDNRLYVTDADGVVVALDRRSGSE----------LW 303 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCceE---eCCEEEEECCCCeEEEEECCCCcE----------EE
Confidence 4578888899999999999998877554211 112222 236788888999999999987421 11
Q ss_pred Ee-ecCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 530 TY-YDFE-QLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 530 t~-~~~~-~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
.. .... ...+... .++.+++++.+|.+.++|..+++.+..++ .+...+..--.-.++ . +..++.||.+-|.
T Consensus 304 ~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~-~~~~~~~~sp~~~~~-~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 304 KNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK-TDGSGIASPPVVVGD-G-LLVQTRDGDLYAF 376 (377)
T ss_pred ccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE-cCCCccccCCEEECC-E-EEEEeCCceEEEe
Confidence 11 1011 1122112 36789999999999999999999998887 344443332222233 3 5578889988764
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.026 Score=62.52 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=94.7
Q ss_pred eeEEEEcCC-CCCEEEE-----EeCCCcEEEEECCCCceEEEEecc-CCCCCEEEEEEeeCCCCEEEEEE--CCC-----
Q 035500 440 PRQFEYNPS-NPSLMAF-----GTLDGEVIVINHENGNVACYIPSI-GGTNSVLGLCWLKKYPSKLVAGS--DSG----- 505 (606)
Q Consensus 440 V~slafsP~-dg~~LaS-----Gs~DGtVrIWDi~tg~~v~~~~~~-gH~~~V~~L~fsp~~~~~LaSgS--~Dg----- 505 (606)
+..+++||. ....+|+ +|.=+.||||-......-..+... --...-..+.|++.+..+|+-++ -|.
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SY 247 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASY 247 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccc
Confidence 677889984 4556665 566678999987632221111100 01112335678876555554443 232
Q ss_pred ----eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCC
Q 035500 506 ----CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREP 579 (606)
Q Consensus 506 ----tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~ 579 (606)
++++.+++. ..+...+...++|.++.|+|++.-|+..- .=.++.|+|++ ++++..+. .++
T Consensus 248 YGEq~Lyll~t~g----------~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---egp 313 (566)
T KOG2315|consen 248 YGEQTLYLLATQG----------ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EGP 313 (566)
T ss_pred cccceEEEEEecC----------ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CCC
Confidence 566666663 44566777789999999999998666553 34789999997 77888887 467
Q ss_pred eEEEEEeCCCCeEEEEEeCC
Q 035500 580 INVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~D 599 (606)
=+++-|||.|.. ++-+|.+
T Consensus 314 RN~~~fnp~g~i-i~lAGFG 332 (566)
T KOG2315|consen 314 RNTAFFNPHGNI-ILLAGFG 332 (566)
T ss_pred ccceEECCCCCE-EEEeecC
Confidence 788999999986 4455544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.02 Score=69.13 Aligned_cols=145 Identities=16% Similarity=0.157 Sum_probs=95.9
Q ss_pred EEEEcCCCCCEEEEEeC---C---CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC---CCeEEEEeC
Q 035500 442 QFEYNPSNPSLMAFGTL---D---GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD---SGCVRLFDL 512 (606)
Q Consensus 442 slafsP~dg~~LaSGs~---D---GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~---DgtIklWDl 512 (606)
.++|-. ||.++|+.+. . +.+|||+-+ |....+.+ .-.+--.+++|-| .++++|+... ...|.+|.-
T Consensus 214 ~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE--~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 214 RISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE--PVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred EEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc--cCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence 477988 9999999875 2 589999977 66554433 3333445789999 6788888764 345666664
Q ss_pred CCCCCCcccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeEEEcCCCCCCeEEEEEeC
Q 035500 513 NHIPPKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK--PLQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k--~v~~l~~gH~~~I~sV~fsP 587 (606)
+.... .-..+. ....|..++|++++..+|..-.|. |.+|-..+-. .-+++.......+..+.|+|
T Consensus 289 NGLrh---------geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 289 NGLRH---------GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred CCcEe---------eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 44211 112222 234599999999999999987655 9999876542 22333333345566699999
Q ss_pred CCCeEEEEEeCCCe
Q 035500 588 HSPLCLLLLHLTTM 601 (606)
Q Consensus 588 ~g~~LLaTgS~Dgt 601 (606)
..+.-+...+.++.
T Consensus 359 e~p~~L~v~t~~g~ 372 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQ 372 (928)
T ss_pred CCCCEEEEEecCCc
Confidence 88876666666443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00048 Score=77.02 Aligned_cols=98 Identities=19% Similarity=0.287 Sum_probs=75.6
Q ss_pred cceEEEccCccccchHHH-hhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEE
Q 035500 101 KLRVVDLSNITLRNDNLL-DLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
.||.|++|||.+...-+- |+++- -.--+||||.|+++... ...+-.++-.|||+ .|+|.+|+-..|-.+--|-.|.
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l-~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS-~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRL-KDLTILDLSHNQLREVPTNLEYAKNSIVLNLS-YNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhHHHhhhccccccCCCCchhccc-ccceeeecchhhhhhcchhhhhhcCcEEEEcc-cCccccCCchHHHhhHhHhhhc
Confidence 467788999888765544 33332 23457999999999876 55677889999999 8999999999999999999999
Q ss_pred cccccccchhhhhHHhhcCCch
Q 035500 179 MCETRIVNLWTTTAAISKLPYL 200 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l 200 (606)
+.+||+.-|--.+.-|+.|.+|
T Consensus 157 LS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 157 LSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccchhhhcCHHHHHHhhhhhh
Confidence 9999988776666555554444
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0034 Score=73.95 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=66.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|.+|.+.. +..- -....+.|+|++|++..+... -+..|++|+|+ +|+|+.++...+ ++|+.|.+
T Consensus 220 ~nL~~L~Ls~N~Lts--LP~~--l~~~L~~L~Ls~N~L~~LP~~-l~s~L~~L~Ls-~N~L~~LP~~l~---~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLTS--IPAT--LPDTIQEMELSINRITELPER-LPSALQSLDLF-HNKISCLPENLP---EELRYLSV 290 (754)
T ss_pred cCCCEEECCCCcccc--CChh--hhccccEEECcCCccCcCChh-HhCCCCEEECc-CCccCccccccC---CCCcEEEC
Confidence 489999999976642 2211 123578899999999877521 23579999999 899999987543 68999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+-.. + .++|.+|.+..
T Consensus 291 s~N~Lt~LP~~---l--p~sL~~L~Ls~ 313 (754)
T PRK15370 291 YDNSIRTLPAH---L--PSGITHLNVQS 313 (754)
T ss_pred CCCccccCccc---c--hhhHHHHHhcC
Confidence 99988765211 1 13677777554
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00034 Score=79.47 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=50.5
Q ss_pred eeEEEccccchhccccccccccccEEecccCCCcccccc-cccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 127 CHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
=+.||||.|.+.|.-++-.+++||+|.|.|| .++-++- .--+| +|..|.+-||-+..| ..+-+|.+|.-|.
T Consensus 189 le~LnLshNk~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc--~L~~L~lrnN~l~tL----~gie~LksL~~LD 260 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKVDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGC--KLQLLNLRNNALTTL----RGIENLKSLYGLD 260 (1096)
T ss_pred hhhhccchhhhhhhHHHHhcccccccccccc-hhccccccchhhh--hheeeeecccHHHhh----hhHHhhhhhhccc
Confidence 4668999999999998889999999999964 4444432 11222 277888877755444 8888888888775
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.092 Score=47.14 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=68.3
Q ss_pred eeEEEEcCCCC---CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNP---SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg---~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|+++++...++ +.|++||.|..||||+-+ ..+..+. -.+.|.+++-.. +..|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~---e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT---ETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe---cccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--
Confidence 55666665333 689999999999999855 4444433 345788888764 37899999999999997643
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccC---C-CEEEEEeCCCcEE
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNST---D-DQFLASGYSKNVA 559 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~---g-~~LaSgs~Dg~I~ 559 (606)
..++ .+.+..+.++++..- | .-+++|-.+|.|-
T Consensus 73 ---------RlWR-iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 ---------RLWR-IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---------eeee-eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1111 223444666655432 3 3788998888764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.042 Score=61.03 Aligned_cols=133 Identities=14% Similarity=0.242 Sum_probs=78.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE-eCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF-DLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW-Dl~~~~~~ 518 (606)
++.+.++| ++++++. +.||.-.|+.....+.... +.....+|.+ .+.+|.-...++|+++ ++..
T Consensus 35 p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~~-------G~g~~~vw~~--~n~yAv~~~~~~I~I~kn~~~---- 99 (443)
T PF04053_consen 35 PQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKAF-------GSGLSFVWSS--RNRYAVLESSSTIKIYKNFKN---- 99 (443)
T ss_dssp -SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEEE-------EE-SEEEE-T--SSEEEEE-TTS-EEEEETTEE----
T ss_pred CeeEEECC-CCCEEEE-EcCCEEEEEEccCCccccc-------CceeEEEEec--CccEEEEECCCeEEEEEcCcc----
Confidence 78899999 8888888 5688888888544443322 2356788986 3567887778999996 3332
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.....+.....+..| |- |.+++..+.+ .|.+||..+++.++.+.. .+|..|.|++++.+ +|-.+.
T Consensus 100 -------~~~k~i~~~~~~~~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~~-val~t~ 164 (443)
T PF04053_consen 100 -------EVVKSIKLPFSVEKI-FG--GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSDDGEL-VALVTK 164 (443)
T ss_dssp --------TT-----SS-EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSE-EEEE-S
T ss_pred -------ccceEEcCCcccceE-Ec--CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEECCCCE-EEEEeC
Confidence 112233333345555 22 7777777664 899999999999999983 34899999999986 455555
Q ss_pred CCeE
Q 035500 599 TTMS 602 (606)
Q Consensus 599 DgtI 602 (606)
|.+.
T Consensus 165 ~~i~ 168 (443)
T PF04053_consen 165 DSIY 168 (443)
T ss_dssp -SEE
T ss_pred CeEE
Confidence 5543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0059 Score=63.44 Aligned_cols=148 Identities=18% Similarity=0.159 Sum_probs=97.8
Q ss_pred cccCCCchhHHHHhhhcCcCccceeeeccCCCcccchhHHHHHHHHhhcc--ceEEEccCccccc--hHHHh---hccCC
Q 035500 52 QLKNADIYPLIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQK--LRVVDLSNITLRN--DNLLD---LCQVG 124 (606)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~--~~~~~---~~~~~ 124 (606)
++.+.|...++.-+.. ++.+++ +.|.+.++.+..+-..+... |+.++++++.++. +.++. .....
T Consensus 9 ~l~~~~~~~~~~~l~~-----L~~l~l---~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 9 LLKTERATELLPKLLC-----LQVLRL---EGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccchHHHHHHHhh-----ccEEee---cCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 4455566555555544 555555 45677777777766665544 9999999998883 43332 23335
Q ss_pred CceeEEEccccchhc--ccccccccc---ccEEecccCCCccccc----ccccccC-ccccEEEcccccccc--hhhhhH
Q 035500 125 SSCHVLILRATNIRK--LNMVGRFMH---LNTLSLDFCSSLASLH----EDCFSCM-PYLMCLSMCETRIVN--LWTTTA 192 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~--l~~~~~~~~---l~tl~l~~~~~~~~~~----~~~~~~~-p~l~~l~~~~~~~~~--l~~~~~ 192 (606)
..=+.|+|+++.+.. -..++.+.+ |+.|+|. +++++.-. ...+..+ |+|+.|.|.+|++.. +=.-..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls-~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLN-NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEee-CCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 577889999999863 223445555 9999999 77777211 1235566 999999999998872 111234
Q ss_pred HhhcCCchhhhhhcee
Q 035500 193 AISKLPYLMELRFQMC 208 (606)
Q Consensus 193 ~l~~~~~l~~l~~~~~ 208 (606)
.+..+++|++|++..|
T Consensus 160 ~~~~~~~L~~L~l~~n 175 (319)
T cd00116 160 ALRANRDLKELNLANN 175 (319)
T ss_pred HHHhCCCcCEEECcCC
Confidence 5667788999987664
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0056 Score=75.77 Aligned_cols=103 Identities=21% Similarity=0.255 Sum_probs=72.4
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
-.+||.+++.++.+. ..-.+.....+ +.|+|+.|++.+|. .+..+++|.+|+|..++.++.++. ++.+|+|+.|
T Consensus 588 p~~Lr~L~~~~~~l~-~lP~~f~~~~L--~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPLR-CMPSNFRPENL--VKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCCC-CCCCcCCccCC--cEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEE
Confidence 357999999885431 11112222233 56999999988884 466789999999998888888875 7788999999
Q ss_pred Eccccc-ccchhhhhHHhhcCCchhhhhhceec
Q 035500 178 SMCETR-IVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 178 ~~~~~~-~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
.|.++. +..+- ..+..|++|+.|.|.+|.
T Consensus 663 ~L~~c~~L~~lp---~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 663 KLSDCSSLVELP---SSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred EecCCCCccccc---hhhhccCCCCEEeCCCCC
Confidence 997753 33332 346678888888888764
|
syringae 6; Provisional |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0092 Score=39.36 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=27.9
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 480 GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 480 gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
.|...|.+++|.+ .+..+++++.|+.+++||
T Consensus 10 ~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 7888999999998 458999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.43 Score=50.65 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=102.2
Q ss_pred eeEEEEcCCCCCEEEEEeCC---CcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---GEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---GtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~ 513 (606)
++-++|+| +.+.|.++..+ |.|--|.+.. |+....-....-..+-..++.++ +++.++++. .-|.|.++-++
T Consensus 42 ptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 42 PTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEEEcc
Confidence 67789999 88888887655 6777766653 55433211111122337888887 567777776 45789999887
Q ss_pred CCCCCcccccCCcceEEeecCCC----------eEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeE----EEcCCCCC
Q 035500 514 HIPPKVADARGNSSVATYYDFEQ----------LTSVHVNSTDDQFLASGY-SKNVALYDINTEKPLQ----LFTDMHRE 578 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~~----------V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt~k~v~----~l~~gH~~ 578 (606)
..... ..++....|..+ +....+.|+++++++..- --.|.+|++..|+... .++ -..
T Consensus 120 ~dG~l------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~--~G~ 191 (346)
T COG2706 120 ADGSL------QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK--PGA 191 (346)
T ss_pred cCCcc------ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC--CCC
Confidence 63221 123333433322 888999999998888753 2478999999775522 222 245
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 579 PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.-+.|.|+|++++..+.+--+++|-+
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEE
Confidence 56789999999988888777777754
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.062 Score=62.34 Aligned_cols=140 Identities=14% Similarity=0.193 Sum_probs=90.3
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe-----EEEEeCCCCCCC
Q 035500 444 EYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC-----VRLFDLNHIPPK 518 (606)
Q Consensus 444 afsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt-----IklWDl~~~~~~ 518 (606)
+|++ .+..+|.|+.+|.|.+.+-. -+....++ .+...+...-|.-.....|+|.+.|+. +++||+......
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fq--a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQ--AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc-ceeeehhe--ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 4777 77899999999998888744 23334444 444443333344334468888887765 899999875432
Q ss_pred cccccCCcce---EEeec-----CCCeEEEEEccCCCEEEEEeCCCcEEEE--ECCCCceeE-EEcCCCCCCeEEEEEeC
Q 035500 519 VADARGNSSV---ATYYD-----FEQLTSVHVNSTDDQFLASGYSKNVALY--DINTEKPLQ-LFTDMHREPINVAKFSH 587 (606)
Q Consensus 519 ~~~l~~~~~i---~t~~~-----~~~V~sV~~sp~g~~LaSgs~Dg~I~IW--Dlrt~k~v~-~l~~gH~~~I~sV~fsP 587 (606)
.. ..++ +.+.+ ..++.++++|.+-..+|.|-.+|.|..+ |+-..+-.+ .....-.++|+.+++..
T Consensus 106 ~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 106 NS----PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred CC----cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 21 1223 22222 3558899999888999999999999988 333222211 11112357999999988
Q ss_pred CCCe
Q 035500 588 HSPL 591 (606)
Q Consensus 588 ~g~~ 591 (606)
++..
T Consensus 182 d~~s 185 (933)
T KOG2114|consen 182 DGKS 185 (933)
T ss_pred CCce
Confidence 8776
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.022 Score=66.17 Aligned_cols=135 Identities=19% Similarity=0.284 Sum_probs=96.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
++..++.|+....+-.+|..+.+....... ..+.|.-++. +++.+.+|...|+|-+-|.++ .+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v--~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s----------~~~i 210 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV--SASGVTIMRY---NNRNLFCGDTRGTVFLRDPNS----------FETI 210 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec--cCCceEEEEe---cCcEEEeecccceEEeecCCc----------Ccee
Confidence 456788888888888999998877665442 1223555554 457899999999999999998 5678
Q ss_pred EEeecC-CCeEEEEEccCCCEEEEEeCC---------CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 529 ATYYDF-EQLTSVHVNSTDDQFLASGYS---------KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 529 ~t~~~~-~~V~sV~~sp~g~~LaSgs~D---------g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.++..| +.|.++.. +|++++|+|.. ..|++||+|+-+.+.-++ -|.++ .-+.|+|.-...++.+|.
T Consensus 211 ht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-~~~~P-~flrf~Psl~t~~~V~S~ 286 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-FPYGP-QFLRFHPSLTTRLAVTSQ 286 (1118)
T ss_pred eeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc-cccCc-hhhhhcccccceEEEEec
Confidence 888865 45777755 59999999874 568999999887765554 23333 456777776666666665
Q ss_pred CCeE
Q 035500 599 TTMS 602 (606)
Q Consensus 599 DgtI 602 (606)
.|..
T Consensus 287 sGq~ 290 (1118)
T KOG1275|consen 287 SGQF 290 (1118)
T ss_pred ccce
Confidence 5543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.1 Score=57.50 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=87.6
Q ss_pred eeEEEEcCC-CCCEEEE-----EeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------C
Q 035500 440 PRQFEYNPS-NPSLMAF-----GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----------D 503 (606)
Q Consensus 440 V~slafsP~-dg~~LaS-----Gs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----------~ 503 (606)
++.++|+|. ++..+|. ++.+++++||.+..+..+.+..+.. -.-..+.|++.+..+++-.- .
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk--~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK--VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe--ecccEEEEecCCceEEEEEEEeeecccceec
Confidence 677889994 4555554 6788999999998777766544322 12346778874433222110 1
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPIN 581 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~ 581 (606)
..++.+++++.. .-++ .....++|.+.+|+|.++.|++.+ .+..+.++|++.. ....++ ...=+
T Consensus 254 esnLyl~~~~e~---------~i~V-~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P---e~~rN 319 (561)
T COG5354 254 ESNLYLLRITER---------SIPV-EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP---EQKRN 319 (561)
T ss_pred cceEEEEeeccc---------ccce-eccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC---Ccccc
Confidence 235667776642 1122 224478899999999998777665 5688999999865 555554 23344
Q ss_pred EEEEeCCCCeEEE
Q 035500 582 VAKFSHHSPLCLL 594 (606)
Q Consensus 582 sV~fsP~g~~LLa 594 (606)
.+-|+|.+.+++.
T Consensus 320 T~~fsp~~r~il~ 332 (561)
T COG5354 320 TIFFSPHERYILF 332 (561)
T ss_pred cccccCcccEEEE
Confidence 5667777776543
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.017 Score=64.79 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=73.4
Q ss_pred CCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeE-EEEEccCCCEEEEEeCCCcEEE
Q 035500 483 NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLT-SVHVNSTDDQFLASGYSKNVAL 560 (606)
Q Consensus 483 ~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~-sV~~sp~g~~LaSgs~Dg~I~I 560 (606)
..+.-+.|+| .-.++|.+..+|.|-+..++. ..+-++. +...++ +++|.|+|+.+|.|-.||+|++
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRL 88 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEE
Confidence 3477788999 557899999999888877774 2344454 334455 9999999999999999999999
Q ss_pred EECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 561 YDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 561 WDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
.|+.++..+..+...-...|.++-|.|.
T Consensus 89 ~Dve~~~~l~~~~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 89 HDVEKGGRLVSFLFSVETDISKGIWDRI 116 (665)
T ss_pred EEccCCCceeccccccccchheeecccc
Confidence 9999998887754335678888888743
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0043 Score=46.30 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=33.0
Q ss_pred eEEEccccchhcccc-ccccccccEEecccCCCcccccc
Q 035500 128 HVLILRATNIRKLNM-VGRFMHLNTLSLDFCSSLASLHE 165 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~-~~~~~~l~tl~l~~~~~~~~~~~ 165 (606)
++|+|++|.|.++.. ++.+++|.+|+|+ +|+|++++.
T Consensus 4 ~~L~l~~N~i~~l~~~l~~l~~L~~L~l~-~N~i~~i~~ 41 (44)
T PF12799_consen 4 EELDLSNNQITDLPPELSNLPNLETLNLS-NNPISDISP 41 (44)
T ss_dssp SEEEETSSS-SSHGGHGTTCTTSSEEEET-SSCCSBEGG
T ss_pred eEEEccCCCCcccCchHhCCCCCCEEEec-CCCCCCCcC
Confidence 579999999999998 9999999999999 889998753
|
... |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0095 Score=70.23 Aligned_cols=83 Identities=24% Similarity=0.299 Sum_probs=42.8
Q ss_pred HHHHHHHh-hccceEEEccCccccchHHHh-hccCCCceeEEEccccchhccccccccccccEEecccCCCccccccccc
Q 035500 91 IMSLMHAI-DQKLRVVDLSNITLRNDNLLD-LCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCF 168 (606)
Q Consensus 91 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~ 168 (606)
|++-|+.- .-+-.++||.++.+.. +-+ +. -.-+.|+|+.|++.+|... .++|.+|+|. +|.|++++.
T Consensus 191 a~~r~~~Cl~~~~~~LdLs~~~Lts--LP~~l~---~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs-~N~LtsLP~--- 259 (788)
T PRK15387 191 VVQKMRACLNNGNAVLNVGESGLTT--LPDCLP---AHITTLVIPDNNLTSLPAL--PPELRTLEVS-GNQLTSLPV--- 259 (788)
T ss_pred HHHHHHHHhcCCCcEEEcCCCCCCc--CCcchh---cCCCEEEccCCcCCCCCCC--CCCCcEEEec-CCccCcccC---
Confidence 45555433 3445667777754431 211 21 1345566666666666543 3566666666 556666643
Q ss_pred ccCccccEEEccccccc
Q 035500 169 SCMPYLMCLSMCETRIV 185 (606)
Q Consensus 169 ~~~p~l~~l~~~~~~~~ 185 (606)
..|+|..|++.+|.+.
T Consensus 260 -lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 260 -LPPGLLELSIFSNPLT 275 (788)
T ss_pred -cccccceeeccCCchh
Confidence 1344444444444443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.011 Score=61.25 Aligned_cols=155 Identities=14% Similarity=0.172 Sum_probs=99.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeccCCC-----CCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-NVACYIPSIGGT-----NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-~~v~~~~~~gH~-----~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
+.++.++. +...+.++ .|-+|.+|+++-- .....+...+|. .-|++..|+|.....+.-.+..|+|++-|++
T Consensus 175 iNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 175 INSISFNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeeeecC-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 77888987 77677665 5788999998642 222233333553 4578889999777777777889999999999
Q ss_pred CCCCCccccc----CCcce--EEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCC--------
Q 035500 514 HIPPKVADAR----GNSSV--ATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE-KPLQLFTDMHR-------- 577 (606)
Q Consensus 514 ~~~~~~~~l~----~~~~i--~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~-------- 577 (606)
....-..... ...++ .-+.. -..|..+.|++.|+++++-+. .+|+|||.+.. .++.+.+ .|.
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~-~h~~l~~~l~d 330 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP-MHCDLMDELND 330 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec-hHHHHHHHHHh
Confidence 5311000000 00000 01111 245889999999999998877 79999999975 5577765 342
Q ss_pred ----CCe---EEEEEeCCCCeEEEEEeCC
Q 035500 578 ----EPI---NVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 578 ----~~I---~sV~fsP~g~~LLaTgS~D 599 (606)
..| ..+.|+.+..+ +.+||..
T Consensus 331 ~YEnDaifdkFeisfSgd~~~-v~sgsy~ 358 (460)
T COG5170 331 VYENDAIFDKFEISFSGDDKH-VLSGSYS 358 (460)
T ss_pred hhhccceeeeEEEEecCCccc-ccccccc
Confidence 233 24667777665 4455543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.013 Score=38.54 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=30.1
Q ss_pred ceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 035500 527 SVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYD 562 (606)
Q Consensus 527 ~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWD 562 (606)
+...+. +...|.+++|++.+..+++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445555 345699999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.015 Score=62.97 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=96.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceE-EEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEeCCCCCCCcccccCCc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVA-CYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFDLNHIPPKVADARGNS 526 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v-~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWDl~~~~~~~~~l~~~~ 526 (606)
-.+++.+|+.||.++.|--..-.-+ -...+..|-+.+.+++.+- ++.++.|++. |..+|++|+...... .
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~Dmi-------n 90 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMI-------N 90 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeeccchh-------h
Confidence 5679999999999999985431111 1223457788888888875 6678888887 999999999874321 1
Q ss_pred ceEEeecCCCeEEEEEccCC--CEEEEEe-CCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 527 SVATYYDFEQLTSVHVNSTD--DQFLASG-YSKNVALYDINTEK-PLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 527 ~i~t~~~~~~V~sV~~sp~g--~~LaSgs-~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
.+....-...+..+ .+|.. ..++.+. .++.+.++|-+..- +..-+...|..+|..+.++|.+.. +++....|+|
T Consensus 91 miKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmV 168 (558)
T KOG0882|consen 91 MIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMV 168 (558)
T ss_pred hcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc-eeecccccee
Confidence 11111112222222 12221 1444443 56999999998654 455566579999999999999884 6677777887
Q ss_pred EE
Q 035500 603 RC 604 (606)
Q Consensus 603 Rc 604 (606)
.+
T Consensus 169 Ey 170 (558)
T KOG0882|consen 169 EY 170 (558)
T ss_pred Ee
Confidence 64
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.014 Score=66.76 Aligned_cols=122 Identities=25% Similarity=0.261 Sum_probs=92.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC----------CCeEEEEeCCCCCCCccc
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD----------SGCVRLFDLNHIPPKVAD 521 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~----------DgtIklWDl~~~~~~~~~ 521 (606)
++|.|+..|+|.|+|+.++.....+. -|++.|.++.|.. + ..|+|.+. -+.+.+-|++++.
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fs--vht~~VkgleW~g-~-sslvSfsys~~n~~sg~vrN~l~vtdLrtGl----- 509 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFS--VHTSLVKGLEWLG-N-SSLVSFSYSHVNSASGGVRNDLVVTDLRTGL----- 509 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhc--ccccceeeeeecc-c-eeEEEeeeccccccccceeeeEEEEEccccc-----
Confidence 78899999999999999988877555 8999999999974 2 34555432 3356677888753
Q ss_pred ccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 522 ARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 522 l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
..+.+..+ ...+|..+..+..+.+++..-.+.-+-+||+++..+++.+.. .-.-|+.+.|+
T Consensus 510 ---sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~-a~P~it~leWs 572 (1062)
T KOG1912|consen 510 ---SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL-ALPLITVLEWS 572 (1062)
T ss_pred ---ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh-cCCcEEEEeec
Confidence 22333333 346799999999999999999999999999998877766552 22338888888
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.029 Score=63.03 Aligned_cols=89 Identities=22% Similarity=0.334 Sum_probs=68.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEE-EEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVL-GLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~-~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.-+.|+| .-.++|.+..+|.|-+.-.. ...+.+++ -|...++ +++|.| ++..++.|=.||+|++-|+.++.
T Consensus 23 i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip--~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~-- 95 (665)
T KOG4640|consen 23 IKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIP--IPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGG-- 95 (665)
T ss_pred eEEEEEcC-ccchhheeccCCcEEEEEec-cceeEecc--CCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCC--
Confidence 56688999 88899999999999998887 56666665 3445566 999999 58999999999999999999853
Q ss_pred cccccCCcceEE--eecCCCeEEEEEc
Q 035500 519 VADARGNSSVAT--YYDFEQLTSVHVN 543 (606)
Q Consensus 519 ~~~l~~~~~i~t--~~~~~~V~sV~~s 543 (606)
.+.. +....+|.++.|.
T Consensus 96 --------~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 96 --------RLVSFLFSVETDISKGIWD 114 (665)
T ss_pred --------ceeccccccccchheeecc
Confidence 2333 3334557777775
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.041 Score=62.48 Aligned_cols=124 Identities=10% Similarity=0.109 Sum_probs=88.5
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc--ccccC---CcceEEeecC-CCeEEEEEccCCCEEEEEe
Q 035500 480 GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV--ADARG---NSSVATYYDF-EQLTSVHVNSTDDQFLASG 553 (606)
Q Consensus 480 gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~--~~l~~---~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs 553 (606)
+......++.|+. ..++++.||.||.+++-.+.+..... +++.. -..-+++.+| ..|.-+.|+...+.+-|+.
T Consensus 12 PnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 3445688999997 67899999999999999887643211 11110 1112355655 5599999999889999999
Q ss_pred CCCcEEEEECCCCceeEEE-cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 554 YSKNVALYDINTEKPLQLF-TDMHREPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 554 ~Dg~I~IWDlrt~k~v~~l-~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
.+|-|.+|=+-.|.=..++ ....++.|.+++|+.+|.. ++..-.||-|..|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVG 142 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVG 142 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEE
Confidence 9999999988877432222 1224678999999999986 5666677766554
|
|
| >smart00446 LRRcap occurring C-terminal to leucine-rich repeats | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0046 Score=40.84 Aligned_cols=22 Identities=50% Similarity=0.718 Sum_probs=19.5
Q ss_pred hhhHHHHHhhCCCceeccCCCC
Q 035500 321 KHYREYMIASLPQLEVLDNLPI 342 (606)
Q Consensus 321 ~~YReyvI~~Lp~LkvLD~~~i 342 (606)
++||+|||..||+|++||....
T Consensus 2 ~~YR~~Vi~~LPqL~~LD~~~~ 23 (26)
T smart00446 2 AHYREKVIRLLPQLRKLDXXXX 23 (26)
T ss_pred ccHHHHHHHHCCccceeccccc
Confidence 6899999999999999997643
|
A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.45 Score=42.80 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=71.7
Q ss_pred EEEEEEee---CCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 035500 485 VLGLCWLK---KYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALY 561 (606)
Q Consensus 485 V~~L~fsp---~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IW 561 (606)
|+++++.. ++...|+.||.|..|++|+-.. .+..+.....|++++-... ..|+.+-.+|+|.+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------IVAEITETDKVTSLCSLGG-GRFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------EEEEEecccceEEEEEcCC-CEEEEEecCCEEEEE
Confidence 56666643 2346799999999999998665 4566667777888866544 789999999999999
Q ss_pred ECCCCceeEEEcCCCCCCeEEEEEe---CCCCeEEEEEeCCCeEEE
Q 035500 562 DINTEKPLQLFTDMHREPINVAKFS---HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 562 Dlrt~k~v~~l~~gH~~~I~sV~fs---P~g~~LLaTgS~DgtIRc 604 (606)
+- .+.+...+ .+..++++++. -+|..-+++|=.+|.|-.
T Consensus 69 ~~--~~RlWRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 69 DR--SQRLWRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eC--cceeeeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 75 33344444 34456666654 344445778888887643
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.0031 Score=70.61 Aligned_cols=156 Identities=13% Similarity=0.174 Sum_probs=98.7
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----CCCeEEEEeCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----DSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----~DgtIklWDl~~ 514 (606)
++|+++.- .+.-+++.|..+|.|-+-.......-......+|....++++|++.+.+.||+|- .|..++|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 55666655 2335899999999999988654222211112378889999999998777777773 467899999988
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
.-. .+. ..+...-.......+++|-.+.+++.+|...+.+.++|+|.... ...+. +..+..+...|-.+..+
T Consensus 139 ~lt--vPk--e~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 139 LLT--VPK--ESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSPNYF 211 (783)
T ss_pred ccC--CCc--cccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCCCce
Confidence 411 000 01111111223466899987788999999999999999994422 22222 34455566777444335
Q ss_pred EEEeCCCeEE
Q 035500 594 LLLHLTTMSR 603 (606)
Q Consensus 594 aTgS~DgtIR 603 (606)
++-+ |+.|.
T Consensus 212 cs~~-dg~iA 220 (783)
T KOG1008|consen 212 CSNS-DGDIA 220 (783)
T ss_pred eccc-cCcee
Confidence 4444 66554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.71 Score=45.61 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=75.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
++..+++++.++.+..||..+|+.+..+...+..... ... .+..++.++.|+.+..+|..+++. ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~--~~~~v~v~~~~~~l~~~d~~tG~~---------~W 100 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVV--DGGRVYVGTSDGSLYALDAKTGKV---------LW 100 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEE--ETTEEEEEETTSEEEEEETTTSCE---------EE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eee--cccccccccceeeeEecccCCcce---------ee
Confidence 4567888899999999999999998877753221112 111 335777788889999999887532 22
Q ss_pred EEeecC----CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 035500 529 ATYYDF----EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 529 ~t~~~~----~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~ 574 (606)
...... ...........++.++.+..++.|..+|+++|+.+...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred eeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 211211 1112222222388889999899999999999999888873
|
... |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.011 Score=69.86 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=7.9
Q ss_pred cccEEEcccccccch
Q 035500 173 YLMCLSMCETRIVNL 187 (606)
Q Consensus 173 ~l~~l~~~~~~~~~l 187 (606)
+|+.|.|.+|++..+
T Consensus 343 ~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 343 GLQELSVSDNQLASL 357 (788)
T ss_pred ccceEecCCCccCCC
Confidence 455555555555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.024 Score=65.40 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=64.7
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
.+-.+.+++.+++||| ..-.+|.|-.-|.+.||...+.+.-... ..|+.+|..+.|++ +++.+.|+..=|.+.+|.
T Consensus 54 r~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~--~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 54 RDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVV--ETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred cccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeeec--cCCCCCceeEEecC-CCCeEEEcCCCceeEEEE
Confidence 3334456789999999 7789999999999999998876554433 38999999999998 678899999999999998
Q ss_pred CC
Q 035500 512 LN 513 (606)
Q Consensus 512 l~ 513 (606)
..
T Consensus 130 ~d 131 (1416)
T KOG3617|consen 130 YD 131 (1416)
T ss_pred ee
Confidence 76
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.056 Score=61.51 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=82.9
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccccc
Q 035500 444 EYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 444 afsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~ 523 (606)
+++. .+.+++.|++-|.+++|+-..+.... .+..+..+.+...+.++ .+.++|.|+..|.|.++-++...+..
T Consensus 40 c~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~---- 112 (726)
T KOG3621|consen 40 CVDA-TEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRD---- 112 (726)
T ss_pred Eeec-CCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCc----
Confidence 3444 67899999999999999987766654 23334455566666676 66788999999999999888732210
Q ss_pred CCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 524 GNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 524 ~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
...+.... |+..|++++|++++..+++|..-|+|..--+.+
T Consensus 113 -~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 -LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred -ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 00111111 456799999999999999999999999887766
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.055 Score=61.55 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=81.8
Q ss_pred CCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 035500 482 TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVAL 560 (606)
Q Consensus 482 ~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~I 560 (606)
...|.--+++. .+.+++-|+.-|.+.++.-..+.. ...... .+..+.....|+...++|.|+..|.|.+
T Consensus 33 ~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~---------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 33 PARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEM---------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred cceEEEEEeec-CCceEEEecccceEEEEecCchhh---------hcccccCccceEEEEEecchhHhhhhhcCCceEEe
Confidence 33455555554 668999999999999998776432 112222 2444667778998999999999999999
Q ss_pred EECCCCce-----eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 561 YDINTEKP-----LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 561 WDlrt~k~-----v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+-+..+.+ +......|+..|++++|++++.. +.+|...|+|.+
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k-~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMK-LYSGDSQGKVVL 150 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccE-EeecCCCceEEE
Confidence 98887544 22222347889999999999986 678888888865
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.35 Score=58.62 Aligned_cols=125 Identities=14% Similarity=0.176 Sum_probs=84.7
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc-CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC----C
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI-GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL----N 513 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~-gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl----~ 513 (606)
+|..++|++ ++.+||..-.|. |.+|-..+...-...... .....+..+.|+|.++..|..++.+|.+..+++ .
T Consensus 306 ~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~ 383 (928)
T PF04762_consen 306 KVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS 383 (928)
T ss_pred eeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE
Confidence 478999999 999999988666 999998764432222221 223345569999988888888888777765443 2
Q ss_pred CCCCC-----------------ccccc---CCcce--EEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 514 HIPPK-----------------VADAR---GNSSV--ATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 514 ~~~~~-----------------~~~l~---~~~~i--~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
..... .+++. -.+|. ..+....+|.+++|++++..+++-..||.+.+|....
T Consensus 384 ~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 384 RSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred ecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 21100 01110 02233 3455678899999999998899999999999998543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.82 Score=47.00 Aligned_cols=157 Identities=15% Similarity=0.215 Sum_probs=93.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++.++|+|.++.++|+....+.|...+. +|+.+..+++.+ .+-.-+|++.. ++.++++--.++.+.+.++.......
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----TT-
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccccc
Confidence 7789999966668888888899988886 488888888766 34678888874 44444444458999999986532211
Q ss_pred ccccCCcceEEee------cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC---CceeE--EE-----cCCCCCCeEEE
Q 035500 520 ADARGNSSVATYY------DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT---EKPLQ--LF-----TDMHREPINVA 583 (606)
Q Consensus 520 ~~l~~~~~i~t~~------~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt---~k~v~--~l-----~~gH~~~I~sV 583 (606)
. ......+. +...+-.++|.|.++.++.+-...-..+|.++. +..+. .. ...+...+.++
T Consensus 101 ~----~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 101 D----RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp -----EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred c----hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence 1 11112222 234489999999988777776665566666653 21111 11 11245668899
Q ss_pred EEeCCCCeEEEEEeCCCeEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIR 603 (606)
+++|...++++-++....+-
T Consensus 177 ~~~p~t~~lliLS~es~~l~ 196 (248)
T PF06977_consen 177 SYDPRTGHLLILSDESRLLL 196 (248)
T ss_dssp EEETTTTEEEEEETTTTEEE
T ss_pred EEcCCCCeEEEEECCCCeEE
Confidence 99999888888887776653
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.019 Score=66.05 Aligned_cols=108 Identities=16% Similarity=0.263 Sum_probs=77.7
Q ss_pred EEEEcCCCCCEEEEEe----CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 442 QFEYNPSNPSLMAFGT----LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 442 slafsP~dg~~LaSGs----~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
-..|||..+ ++|.++ ..|.|.||- ++|++...+...-| +.++||+|. .-.|++|=.-|.+.+|.-.+.+
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e- 92 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTE- 92 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChH-HHHHhhccccceeEEEecCCce-
Confidence 356999555 777766 458888885 44655443322223 567999994 4567788888999999887732
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDIN 564 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr 564 (606)
.......|..+|..+.|+|+|+.++|+..=|.|.+|-..
T Consensus 93 --------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 --------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 122234467779999999999999999999999999665
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.02 Score=66.98 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=51.8
Q ss_pred cccchhccccccccccccEEecccCCCccccc-ccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 133 RATNIRKLNMVGRFMHLNTLSLDFCSSLASLH-EDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 133 ~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~-~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+..-++|.+.. ||.|.+|.+. +..+..-+ ..-+..+|||..|.+.+|+|.|| ..+|.|++|..|-+++
T Consensus 136 s~~W~~kig~~--LPsL~sL~i~-~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 136 SNGWPKKIGTM--LPSLRSLVIS-GRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNLQVLSMRN 204 (699)
T ss_pred hccHHHHHhhh--CcccceEEec-CceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccHHHHhccC
Confidence 45567777755 7888888776 44433221 13366899999999999999999 9999999999998665
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.02 Score=67.59 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=51.2
Q ss_pred HHHHH-HHhhccceEEEccCccccchHHHh-hccCCCceeEEEccccchhccccccccccccEEecccCCCccccccccc
Q 035500 91 IMSLM-HAIDQKLRVVDLSNITLRNDNLLD-LCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCF 168 (606)
Q Consensus 91 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~ 168 (606)
|+..| -....+..+++|.++ +-.-+-. + ...-..|+|++|.|..|.. ..+.+|.+|.|. +|.+++|+...
T Consensus 168 a~~r~~~Cl~~~~~~L~L~~~--~LtsLP~~I---p~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls-~N~LtsLP~~l- 239 (754)
T PRK15370 168 AVQRMRDCLKNNKTELRLKIL--GLTTIPACI---PEQITTLILDNNELKSLPE-NLQGNIKTLYAN-SNQLTSIPATL- 239 (754)
T ss_pred HHHHHHhhcccCceEEEeCCC--CcCcCCccc---ccCCcEEEecCCCCCcCCh-hhccCCCEEECC-CCccccCChhh-
Confidence 33334 345556677777773 2222221 2 2245668888887777653 134577777777 66777776532
Q ss_pred ccCccccEEEcccccccch
Q 035500 169 SCMPYLMCLSMCETRIVNL 187 (606)
Q Consensus 169 ~~~p~l~~l~~~~~~~~~l 187 (606)
.++|+.|.|.+|++..+
T Consensus 240 --~~~L~~L~Ls~N~L~~L 256 (754)
T PRK15370 240 --PDTIQEMELSINRITEL 256 (754)
T ss_pred --hccccEEECcCCccCcC
Confidence 34677777777776655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.16 Score=61.07 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=73.2
Q ss_pred EEEEcCCCCCEEEE-----EeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE---ECCCeEEEEeCC
Q 035500 442 QFEYNPSNPSLMAF-----GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG---SDSGCVRLFDLN 513 (606)
Q Consensus 442 slafsP~dg~~LaS-----Gs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg---S~DgtIklWDl~ 513 (606)
++.|-- ||.++|+ ...-+.|+|||-+ |....+-. ...+.=.+++|-| .+.++++- +.|+.|.++.-+
T Consensus 200 ~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se--~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 200 SISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE--PVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred eEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccC--cccccccceeecC-CCCeEeeeeecCCCCcEEEEecC
Confidence 466877 8889988 3334899999987 55443222 3334456899999 66777775 356678888766
Q ss_pred CCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEE---EeCCCcEEEEECCC
Q 035500 514 HIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLA---SGYSKNVALYDINT 565 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaS---gs~Dg~I~IWDlrt 565 (606)
.-.. ..-...+.- ...|..++|+.++..+|. ......|++|-+.+
T Consensus 275 GL~h-------g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 275 GLRH-------GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred Cccc-------cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 5321 111111222 233899999999998887 44445599997765
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.11 Score=57.69 Aligned_cols=137 Identities=10% Similarity=0.118 Sum_probs=89.6
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC------CCEEEEEECCCeEEEEeCCCCCCCccc
Q 035500 449 NPSLMA-FGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY------PSKLVAGSDSGCVRLFDLNHIPPKVAD 521 (606)
Q Consensus 449 dg~~La-SGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~------~~~LaSgS~DgtIklWDl~~~~~~~~~ 521 (606)
+.++|. +|..-..++=-|++.|+.+...++ |+. |.-+.+.|+. +..-+.|-.|..|.=||.+-...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~--~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~---- 416 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKF--EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK---- 416 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeec--cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc----
Confidence 444444 455556688889999999987774 333 5555555532 11223466788899999986321
Q ss_pred ccCCcceE-----EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 522 ARGNSSVA-----TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 522 l~~~~~i~-----t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
.-+. .+..+....|.+-. .+.+++.||.+|.|++||--..+.-..++ +-..+|..|..+.+|.|+++||
T Consensus 417 ----~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 417 ----NKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALP-GLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred ----ceeeeeeccccccccccceeeec-CCceEEEeecCCcEEeehhhhhhhhhccc-ccCCceeeEEeeccCcEEEEec
Confidence 1121 12223334444332 34689999999999999974334444556 6788999999999999999887
Q ss_pred eC
Q 035500 597 HL 598 (606)
Q Consensus 597 S~ 598 (606)
-.
T Consensus 491 ~t 492 (644)
T KOG2395|consen 491 KT 492 (644)
T ss_pred cc
Confidence 54
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.12 Score=56.21 Aligned_cols=151 Identities=15% Similarity=0.064 Sum_probs=103.5
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCC--C-EE-EEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYP--S-KL-VAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~--~-~L-aSgS~DgtIklWDl~~ 514 (606)
+.+++.+- ++-+++|++. |+.++++|+++-..+..+++..-.+. +.|....+ . .+ ++.-.+|.+.++|-..
T Consensus 56 I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~ 131 (558)
T KOG0882|consen 56 ILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFG 131 (558)
T ss_pred HHhhhccc-cceeEeeccCcccceeEEEeeccchhhhcccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcC
Confidence 45566666 8889999777 99999999988666544443332222 33432122 1 23 3344788999999877
Q ss_pred CCCCcccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------Cce---------eEEEcCCCC
Q 035500 515 IPPKVADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT------EKP---------LQLFTDMHR 577 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt------~k~---------v~~l~~gH~ 577 (606)
.. .+...+. |..+|..+.++|.+..++|....|.|.-|.... .+. +..+.. .+
T Consensus 132 d~---------~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-~K 201 (558)
T KOG0882|consen 132 DF---------CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-AK 201 (558)
T ss_pred Cc---------CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc-cc
Confidence 42 2232333 567899999999999999999999999998773 111 122221 34
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 578 EPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 578 ~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
....++.|+|++.. +++-+.|.+||.+
T Consensus 202 t~pts~Efsp~g~q-istl~~DrkVR~F 228 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQ-ISTLNPDRKVRGF 228 (558)
T ss_pred cCccceEEccccCc-ccccCcccEEEEE
Confidence 66789999999986 7888899999864
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.2 Score=55.73 Aligned_cols=111 Identities=12% Similarity=0.109 Sum_probs=72.6
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEC---CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEE---e
Q 035500 480 GGTNSVLGLCWLKKYPSKLVAGSD---SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLAS---G 553 (606)
Q Consensus 480 gH~~~V~~L~fsp~~~~~LaSgS~---DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSg---s 553 (606)
.-+..|...+|-|. ++.++.-+. -.++.+|.+.+.... ...+..+. +...+.|.|+|.|.+++.+ |
T Consensus 443 elke~vi~FaWEP~-gdkF~vi~g~~~k~tvsfY~~e~~~~~------~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 443 ELKESVIAFAWEPH-GDKFAVISGNTVKNTVSFYAVETNIKK------PSLVKELD-KKFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred ecchheeeeeeccC-CCeEEEEEccccccceeEEEeecCCCc------hhhhhhhc-ccccceEEEcCCCcEEEEEEecc
Confidence 44678999999994 566555432 347888888852210 12233333 3558899999999987766 4
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 554 YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 554 ~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
..|.+.++|+.......+-...| ...+.+.|.|.|+| ++|+|.-.
T Consensus 515 ~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRY-vvT~ss~w 559 (698)
T KOG2314|consen 515 RRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRY-VVTSSSSW 559 (698)
T ss_pred cccceEEEecchhhhhhccCccc-cccccceECCCCCE-EEEeeehh
Confidence 56899999998644332222124 45678999999998 55665443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.005 Score=57.45 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=67.3
Q ss_pred chHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhh
Q 035500 114 NDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTT 191 (606)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~ 191 (606)
-|.++.|+ +|-.=..++|++|.|+|+. ..-+|+-+.||||. +|.|..+++. |..||-|+.|.+..|.+.-+-.-+
T Consensus 43 ~davy~l~-~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi 119 (177)
T KOG4579|consen 43 ADAVYMLS-KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVI 119 (177)
T ss_pred HHHHHHHh-CCceEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHH-HhhhHHhhhcccccCccccchHHH
Confidence 34555555 3444455889999999665 44578889999999 9999999999 999999999999999998887777
Q ss_pred HHhhcCCchh
Q 035500 192 AAISKLPYLM 201 (606)
Q Consensus 192 ~~l~~~~~l~ 201 (606)
+.|-||-+|.
T Consensus 120 ~~L~~l~~Ld 129 (177)
T KOG4579|consen 120 APLIKLDMLD 129 (177)
T ss_pred HHHHhHHHhc
Confidence 7766666554
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.28 Score=54.12 Aligned_cols=145 Identities=9% Similarity=0.064 Sum_probs=93.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCC---------------cEEEEECCCCceEEEEeccCCCCCEE-EEEEeeCCCCEEEEEEC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG---------------EVIVINHENGNVACYIPSIGGTNSVL-GLCWLKKYPSKLVAGSD 503 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG---------------tVrIWDi~tg~~v~~~~~~gH~~~V~-~L~fsp~~~~~LaSgS~ 503 (606)
|+-+.|+| .+.+|.+-+.-+ .+.|||+.+|..+..+.........+ -+.|+. ++.++|-- .
T Consensus 74 V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v 150 (561)
T COG5354 74 VKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-V 150 (561)
T ss_pred ceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-c
Confidence 67788999 999999866544 39999999999998877444443356 678886 44554433 3
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCC--EEE-----EEeCCCcEEEEECCCCceeEEEcCCC
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDD--QFL-----ASGYSKNVALYDINTEKPLQLFTDMH 576 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~--~La-----Sgs~Dg~I~IWDlrt~k~v~~l~~gH 576 (606)
...++++++.. ... ..+...++ ...|..-.|+|.++ .|+ .++..+++++|.+..+..+.+... .
T Consensus 151 ~~sl~i~e~t~-n~~------~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-f 221 (561)
T COG5354 151 GSSLYIHEITD-NIE------EHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-F 221 (561)
T ss_pred cCeEEEEecCC-ccc------cCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-E
Confidence 34689999732 111 11222222 23477778888753 333 246678999999997766544331 2
Q ss_pred CCCeEEEEEeCCCCeEEEEE
Q 035500 577 REPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 577 ~~~I~sV~fsP~g~~LLaTg 596 (606)
.-.=-.+.|++.|.++++-.
T Consensus 222 k~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 222 KVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred eecccEEEEecCCceEEEEE
Confidence 22334688999999877643
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.6 Score=46.06 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=87.3
Q ss_pred CCEEEEEeC----------CCcEEEEECCCC----ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 450 PSLMAFGTL----------DGEVIVINHENG----NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 450 g~~LaSGs~----------DGtVrIWDi~tg----~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
..+++.|+. .|.|.++++... .....+......++|++++-. + +.++.|. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~-~~lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--N-GRLVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--T-TEEEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--C-CEEEEee-cCEEEEEEccCc
Confidence 468888764 299999999874 233333333557889999876 3 3444443 589999999984
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEE--ECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALY--DINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IW--Dlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
.. -.+...+.....+.++... +++++.|..-+.+.++ +....+....-.......++++.|-+++. .+
T Consensus 118 ~~-------l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~ 187 (321)
T PF03178_consen 118 KT-------LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TI 187 (321)
T ss_dssp SS-------EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EE
T ss_pred cc-------chhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EE
Confidence 30 1223334344557777655 7799999888888876 44222232222222456688999987775 67
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
+.+..+|.+.+
T Consensus 188 i~~D~~gnl~~ 198 (321)
T PF03178_consen 188 IVGDKDGNLFV 198 (321)
T ss_dssp EEEETTSEEEE
T ss_pred EEEcCCCeEEE
Confidence 88888887754
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.71 Score=45.61 Aligned_cols=102 Identities=11% Similarity=0.034 Sum_probs=66.0
Q ss_pred CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCe
Q 035500 458 LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQL 537 (606)
Q Consensus 458 ~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V 537 (606)
.+|+|..||..+|+.+.......-.......... .+..+++++.++.+..||..+++ .+-.+.....+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~----------~~W~~~~~~~~ 68 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGK----------VLWRFDLPGPI 68 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSE----------EEEEEECSSCG
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCC----------EEEEeeccccc
Confidence 3789999999999999877652212222222222 34678888999999999998742 22222222221
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 035500 538 TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLF 572 (606)
Q Consensus 538 ~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l 572 (606)
...- ...+..++.++.++.+..+|..+|+.+...
T Consensus 69 ~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 69 SGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp GSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred ccee-eecccccccccceeeeEecccCCcceeeee
Confidence 1111 223566677778889999999999998874
|
... |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.024 Score=61.39 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=41.5
Q ss_pred eEEEccccchhccccccccc--cccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhh-cCCchhhhh
Q 035500 128 HVLILRATNIRKLNMVGRFM--HLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAIS-KLPYLMELR 204 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~~--~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~-~~~~l~~l~ 204 (606)
..|++.+|.|-++.-...+. +|..|.+. .|.|..++ ..-..+|+|..|.+.+|+++.+ .++. +++.|.+|.
T Consensus 119 ~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~-~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l----~~~~~~~~~L~~L~ 192 (394)
T COG4886 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLS-DNKIESLP-SPLRNLPNLKNLDLSFNDLSDL----PKLLSNLSNLNNLD 192 (394)
T ss_pred eEEecCCcccccCccccccchhhccccccc-ccchhhhh-hhhhccccccccccCCchhhhh----hhhhhhhhhhhhee
Confidence 44666666666666544443 56666666 66666653 2245566666666666665555 4444 556666554
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.2 Score=47.71 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=72.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
.++.+++++.+|.|.-+|..+|+.+......+.- ...... .+..++.++.||.+..||..+++. +
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~--~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~----------~ 128 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERL--SGGVGA---DGGLVFVGTEKGEVIALDAEDGKE----------L 128 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc--ccceEE---cCCEEEEEcCCCEEEEEECCCCcE----------e
Confidence 4568889999999999999999998766543311 112222 246788889999999999877431 1
Q ss_pred EEeecCCCeEE-EEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 529 ATYYDFEQLTS-VHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 529 ~t~~~~~~V~s-V~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
-.......+.+ ... .+..++.++.++.+..||.++|+.+..++
T Consensus 129 W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 129 WRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred eeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 11111222211 111 25677778889999999999999877665
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.11 Score=61.60 Aligned_cols=95 Identities=22% Similarity=0.210 Sum_probs=68.2
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC
Q 035500 496 SKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM 575 (606)
Q Consensus 496 ~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g 575 (606)
..++.|+.-|.+-..|.+.+- ......-....+|++++|+.+|.+++.|-.+|.|.+||+.++++.+.+. .
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL--------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e 170 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL--------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-E 170 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc--------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-e
Confidence 468888888989888888731 1111122245779999999999999999999999999999999988877 3
Q ss_pred CCCCeEE---EEEeCCCCeEEEEEeCCC
Q 035500 576 HREPINV---AKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 576 H~~~I~s---V~fsP~g~~LLaTgS~Dg 600 (606)
|..+.+. +.+..++. .+.++...|
T Consensus 171 ~~ap~t~vi~v~~t~~nS-~llt~D~~G 197 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNS-KLLTSDTGG 197 (1206)
T ss_pred cCCccceEEEEEEeCCCc-EEEEccCCC
Confidence 5444433 33444444 466766666
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.013 Score=60.97 Aligned_cols=101 Identities=23% Similarity=0.235 Sum_probs=79.2
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccc-cccccccEEecccCCCcccccccccccCccccEEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMV-GRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
-|+|+++|+-| |.--+.+| |.=.+-+.||||.|-+.++... -++-++.||+|. -|-|.++.- ..-+=.|..|.
T Consensus 307 Pkir~L~lS~N--~i~~v~nL-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La-~N~iE~LSG--L~KLYSLvnLD 380 (490)
T KOG1259|consen 307 PKLRRLILSQN--RIRTVQNL-AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA-QNKIETLSG--LRKLYSLVNLD 380 (490)
T ss_pred cceeEEecccc--ceeeehhh-hhcccceEeecccchhHhhhhhHhhhcCEeeeehh-hhhHhhhhh--hHhhhhheecc
Confidence 58999999984 44444553 2334568899999999998744 489999999999 999988853 44566788999
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhce
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+.+|+|.|| ..+..+-+||.|.-|++-+
T Consensus 381 l~~N~Ie~l-deV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 381 LSSNQIEEL-DEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred ccccchhhH-HHhcccccccHHHHHhhcC
Confidence 999999999 6667778899998887544
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.0091 Score=69.90 Aligned_cols=98 Identities=24% Similarity=0.339 Sum_probs=77.6
Q ss_pred ccceEEEccCc---cccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCcccc
Q 035500 100 QKLRVVDLSNI---TLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLM 175 (606)
Q Consensus 100 ~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~ 175 (606)
.+|||+||..| +|--.++++|.+ =+.|+||+|.+..|. -+-.+.+||||... +|.|.+|+| +...|.|+
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~----LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah-sN~l~~fPe--~~~l~qL~ 455 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEE----LEELNLSGNKLTTLPDTVANLGRLHTLRAH-SNQLLSFPE--LAQLPQLK 455 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHH----hHHHhcccchhhhhhHHHHhhhhhHHHhhc-CCceeechh--hhhcCcce
Confidence 37899999987 455667776654 366999999999988 44578999999999 999999998 99999999
Q ss_pred EEEcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 176 CLSMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 176 ~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
++.+.-|.+.+. |--+++.+ |.|++|.|.
T Consensus 456 ~lDlS~N~L~~~-~l~~~~p~-p~LkyLdlS 484 (1081)
T KOG0618|consen 456 VLDLSCNNLSEV-TLPEALPS-PNLKYLDLS 484 (1081)
T ss_pred EEecccchhhhh-hhhhhCCC-cccceeecc
Confidence 999999999877 33333333 678888743
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.99 Score=54.60 Aligned_cols=147 Identities=10% Similarity=0.078 Sum_probs=91.5
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC----
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH---- 514 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~---- 514 (606)
++.++.|.- +++-++.+..+|.|.+-|.++....-. . .-...|.+.+|+| ++..++-.+.++++.+-+-.-
T Consensus 70 ~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eiv-g--~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLA-DTNSICVITALGDIILVDPETLELEIV-G--NVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred ceEEEEEec-ccceEEEEecCCcEEEEcccccceeee-e--eccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchh
Confidence 377889988 889999999999999999887654321 1 2346799999999 678888888888877644311
Q ss_pred CCCC-----------cccccCCcceEEee----------------------cCCCeEEEEEccCCCEEEEEe-----CCC
Q 035500 515 IPPK-----------VADARGNSSVATYY----------------------DFEQLTSVHVNSTDDQFLASG-----YSK 556 (606)
Q Consensus 515 ~~~~-----------~~~l~~~~~i~t~~----------------------~~~~V~sV~~sp~g~~LaSgs-----~Dg 556 (606)
..+. .-.|. + .-..|+ -++.=++|+|--+|++||+.+ ..+
T Consensus 145 E~~L~~d~~~~sk~v~VGwG-r-keTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWG-R-KETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred ccccccccccccccceeccc-c-cceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 0000 00110 0 000111 111234699999999999843 237
Q ss_pred cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 557 NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 557 ~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
+|++||-+ |..-.+=. ...+-=.+++|-|.|..+.+
T Consensus 223 kirV~drE-g~Lns~se-~~~~l~~~LsWkPsgs~iA~ 258 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSE-PVEGLQHSLSWKPSGSLIAA 258 (1265)
T ss_pred eEEEeccc-chhhcccC-cccccccceeecCCCCeEee
Confidence 99999987 43311111 12233347999998885433
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.003 Score=67.63 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=66.6
Q ss_pred cceEEEccCccccchHHHhhccCCCc--eeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccE
Q 035500 101 KLRVVDLSNITLRNDNLLDLCQVGSS--CHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
|||.+||+. .++.|+..=...|+. =+.+++++|+|+.|- .++.+-.|.-|.|+ -++|.++.++-|.-||+|.-
T Consensus 92 ~LRrLdLS~--N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN-an~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 92 RLRRLDLSK--NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN-ANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred hhceecccc--cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC-hhhhcchhHHHHHHhhhcch
Confidence 799999998 778888766666665 244666778888885 67788888888888 88888888888888999988
Q ss_pred EEcccccccch
Q 035500 177 LSMCETRIVNL 187 (606)
Q Consensus 177 l~~~~~~~~~l 187 (606)
||+-+|.+.-+
T Consensus 169 LslyDn~~q~i 179 (498)
T KOG4237|consen 169 LSLYDNKIQSI 179 (498)
T ss_pred hcccchhhhhh
Confidence 88888876654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.024 Score=59.10 Aligned_cols=72 Identities=28% Similarity=0.350 Sum_probs=53.9
Q ss_pred EEccccchhccccc----cccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhc-CCchhhhh
Q 035500 130 LILRATNIRKLNMV----GRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISK-LPYLMELR 204 (606)
Q Consensus 130 ~~~~~~~~~~l~~~----~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~-~~~l~~l~ 204 (606)
+||..|.|.+-+-+ ..+++|.||||. ||++.+-=..--.-.-||+.|.+.+|... ||++..+.+ ||.+.||.
T Consensus 76 lDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~~lVLNgT~L~--w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSDIKSLPLPLKNLRVLVLNGTGLS--WTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCccccCcccccceEEEEEcCCCCC--hhhhhhhhhcchhhhhhh
Confidence 55555666555433 368999999999 99988764332234559999999999887 998877665 99999995
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.50 E-value=2.9 Score=44.19 Aligned_cols=135 Identities=12% Similarity=0.190 Sum_probs=91.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcE-EEEECCCCceEEEEe------ccCCCCCEEEEEEeeCCCCEEEEE-----ECCCeE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEV-IVINHENGNVACYIP------SIGGTNSVLGLCWLKKYPSKLVAG-----SDSGCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtV-rIWDi~tg~~v~~~~------~~gH~~~V~~L~fsp~~~~~LaSg-----S~DgtI 507 (606)
...++.+|..+..+|.+-.-|+. .+||..+++....+. +.|| -+|++ ++++|++. +..|.|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~-dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSP-DGRLLYTTENDYETGRGVI 79 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcC-CCCEEEEeccccCCCcEEE
Confidence 34567899888888888887765 589999988876554 2344 36888 56777765 457899
Q ss_pred EEEeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeC------------------CCcEEEEECCCCce
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGY------------------SKNVALYDINTEKP 568 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~------------------Dg~I~IWDlrt~k~ 568 (606)
-|||.... -..+..|..++- -..+.+.|+|+.++.+-. +-.+..-|.++|+.
T Consensus 80 gVyd~~~~---------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l 150 (305)
T PF07433_consen 80 GVYDAARG---------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL 150 (305)
T ss_pred EEEECcCC---------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce
Confidence 99999942 234445553322 456678888865555411 23455567788877
Q ss_pred eEE--Ec-CCCCCCeEEEEEeCCCC
Q 035500 569 LQL--FT-DMHREPINVAKFSHHSP 590 (606)
Q Consensus 569 v~~--l~-~gH~~~I~sV~fsP~g~ 590 (606)
+.. ++ .-|+..|..++++++|.
T Consensus 151 l~q~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 151 LEQVELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred eeeeecCccccccceeeEEecCCCc
Confidence 655 32 13778899999999986
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.0075 Score=67.86 Aligned_cols=55 Identities=29% Similarity=0.380 Sum_probs=43.6
Q ss_pred EEEccccchhcccc-ccccccccEEecccCCCcccccccccccCccccEEEccccccc
Q 035500 129 VLILRATNIRKLNM-VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIV 185 (606)
Q Consensus 129 ~~~~~~~~~~~l~~-~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~ 185 (606)
-||||+|+|.+|+| .|...+|+||||+ -|.+|.++ +|---+|+|++|...+|++.
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlS-rNQLt~LP-~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLS-RNQLTVLP-DAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccc-cchhccch-HHHhhhHHHHHHHhccCccc
Confidence 36888888888885 5678888888888 88888887 67777888888888888654
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.04 Score=66.16 Aligned_cols=101 Identities=24% Similarity=0.238 Sum_probs=77.5
Q ss_pred ccceEEEccCccccchH---HHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCcccc
Q 035500 100 QKLRVVDLSNITLRNDN---LLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLM 175 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~ 175 (606)
++|||.||+.+.=|... +.+|.+=. -|||+.+.|+.|. .+++|+.|.+|||++..++.++ .+....|++|+
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~Lr----yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr 645 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLR----YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLR 645 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhh----cccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhccccc
Confidence 58999999965555444 66666543 5999999999887 7889999999999988888888 56677799999
Q ss_pred EEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 176 CLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 176 ~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+|.+-...+.+==-.+..|-+|..|+.|.+
T Consensus 646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 646 VLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred EEEeeccccccchhhHHhhhcccchhhhee
Confidence 999977763332234466777777777763
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.057 Score=62.63 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=59.5
Q ss_pred eEEEccccchhc-c-ccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRK-L-NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~-l-~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+.|+|++|.+.- + ..++.+.+|++|+|. .|.++..-...|..|++|+.|.+.+|++... --..+.+|++|+.|.+
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls-~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~--iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLS-GNSIRGNIPPSLGSITSLEVLDLSYNSFNGS--IPESLGQLTSLRILNL 497 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCCCEEECC-CCcccCcCChHHhCCCCCCEEECCCCCCCCC--CchHHhcCCCCCEEEC
Confidence 468888887752 2 245678999999999 7888754445689999999999999988742 2245788999999986
Q ss_pred cee
Q 035500 206 QMC 208 (606)
Q Consensus 206 ~~~ 208 (606)
..+
T Consensus 498 s~N 500 (623)
T PLN03150 498 NGN 500 (623)
T ss_pred cCC
Confidence 653
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.072 Score=66.13 Aligned_cols=102 Identities=23% Similarity=0.261 Sum_probs=62.5
Q ss_pred ccceEEEccCccccchHHHhh-ccCCCceeEEEcccc-chhccccccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDL-CQVGSSCHVLILRAT-NIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+.+ .+... .-..+ +.|+|+++ .+..+..++.+++|++|+|..|++++.++. .+..+++|+.|
T Consensus 611 ~~L~~L~L~~s~l~~-L~~~~~~l~~L--k~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L 686 (1153)
T PLN03210 611 ENLVKLQMQGSKLEK-LWDGVHSLTGL--RNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDL 686 (1153)
T ss_pred cCCcEEECcCccccc-cccccccCCCC--CEEECCCCCCcCcCCccccCCcccEEEecCCCCccccch-hhhccCCCCEE
Confidence 467777777755432 11111 01122 45777754 466666666777888888877777777764 36777888888
Q ss_pred Ecccc-cccchhhhhHHhhcCCchhhhhhceec
Q 035500 178 SMCET-RIVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 178 ~~~~~-~~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
.|.++ .+..+- .-..|++|+.|.|++|.
T Consensus 687 ~L~~c~~L~~Lp----~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 687 DMSRCENLEILP----TGINLKSLYRLNLSGCS 715 (1153)
T ss_pred eCCCCCCcCccC----CcCCCCCCCEEeCCCCC
Confidence 88763 344442 22257777777777763
|
syringae 6; Provisional |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=93.77 E-value=1.2 Score=51.20 Aligned_cols=103 Identities=12% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCcEEEEECCC-----CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccc-ccCCcc-eEEe
Q 035500 459 DGEVIVINHEN-----GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVAD-ARGNSS-VATY 531 (606)
Q Consensus 459 DGtVrIWDi~t-----g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~-l~~~~~-i~t~ 531 (606)
+++|.|.|..+ .+.+.++. -....+++.++|++...++++..+.+|.|.|+.+.+..... +..... +...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP---VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP---VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE---CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 45688888877 34444443 23568899999955444566677999999999885321100 000111 1122
Q ss_pred e-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 532 Y-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 532 ~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
. +..+ ...+|.++|+...|---|..|..||+.+
T Consensus 372 evGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 2 2233 4567888888888888999999999986
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.73 E-value=2.2 Score=50.11 Aligned_cols=140 Identities=15% Similarity=0.163 Sum_probs=89.6
Q ss_pred CCCEEEEEeCCCc-----EEEEECCCC---c---eEEEEeccC-----CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 449 NPSLMAFGTLDGE-----VIVINHENG---N---VACYIPSIG-----GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 449 dg~~LaSGs~DGt-----VrIWDi~tg---~---~v~~~~~~g-----H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
..+++++-+.|++ ++|||.+.- . +.......+ ...++..++.+. +-..++.|=.||.|..+.-
T Consensus 76 ~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~G 154 (933)
T KOG2114|consen 76 KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKG 154 (933)
T ss_pred CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcC
Confidence 4467887776654 899998642 1 221112222 345678888886 4577888889999988864
Q ss_pred CCCCCCcccccCCcceEEeecCCCeEEEEEccCCCE--EEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCC
Q 035500 513 NHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQ--FLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~--LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g 589 (606)
.-..... .+-.....++.+|+.+.+..++.. |++.. ..|..|.+....+ ...+. .|...++|..|++..
T Consensus 155 Di~RDrg-----sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt--~~V~~y~l~gr~p~~~~ld-~~G~~lnCss~~~~t 226 (933)
T KOG2114|consen 155 DILRDRG-----SRQDYSHRGKEPITGLALRSDGKSVLFVATT--EQVMLYSLSGRTPSLKVLD-NNGISLNCSSFSDGT 226 (933)
T ss_pred cchhccc-----cceeeeccCCCCceeeEEecCCceeEEEEec--ceeEEEEecCCCcceeeec-cCCccceeeecCCCC
Confidence 4321110 112223446788999999988865 44443 5689999884443 44455 588899999999877
Q ss_pred CeEEEEEe
Q 035500 590 PLCLLLLH 597 (606)
Q Consensus 590 ~~LLaTgS 597 (606)
..++++++
T Consensus 227 ~qfIca~~ 234 (933)
T KOG2114|consen 227 YQFICAGS 234 (933)
T ss_pred ccEEEecC
Confidence 65555544
|
|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.049 Score=60.82 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=33.9
Q ss_pred ccchhhhhhhccCCCCcccchhhH-H---HHHhhCCCceeccCCCCCc
Q 035500 301 DANVKLKKYISHHPSPICFEKHYR-E---YMIASLPQLEVLDNLPIGR 344 (606)
Q Consensus 301 l~~v~L~~~l~~~~npi~~~~~YR-e---yvI~~Lp~LkvLD~~~i~~ 344 (606)
++.+.|+ .+-+++||+|...-+| + +|-...|+|..||+.++..
T Consensus 267 ~k~l~Le-el~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG~ev~~ 313 (585)
T KOG3763|consen 267 LKGLPLE-ELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDGVEVQP 313 (585)
T ss_pred hcCCCHH-HeeecCCccccchhhhHHHHHHHHHhcchheeecCcccCc
Confidence 5566777 8999999999776655 3 4555799999999988765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=93.57 E-value=4.8 Score=41.79 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=88.4
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCC--CceEEEEec-cCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q 035500 444 EYNPSNPSLMAFGTLDGEVIVINHEN--GNVACYIPS-IGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVA 520 (606)
Q Consensus 444 afsP~dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~-~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~ 520 (606)
+.++ +|+++|.- .|..|.|-..+. ...+..... ..-.-.=.-++|+| +...||.+...|+|+++|+.....-.
T Consensus 4 ~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~- 79 (282)
T PF15492_consen 4 ALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFV- 79 (282)
T ss_pred eecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeEE-
Confidence 4455 77766654 466676665443 122222111 11122345799999 67899999999999999998632110
Q ss_pred cccCCcceEEee--cCCCeEEEEEccC------CCEEEEEeCCCcEEEEECCCC-----cee--EEEcCCCCCCeEEEEE
Q 035500 521 DARGNSSVATYY--DFEQLTSVHVNST------DDQFLASGYSKNVALYDINTE-----KPL--QLFTDMHREPINVAKF 585 (606)
Q Consensus 521 ~l~~~~~i~t~~--~~~~V~sV~~sp~------g~~LaSgs~Dg~I~IWDlrt~-----k~v--~~l~~gH~~~I~sV~f 585 (606)
-.+...+. -..+|.++.|-+- ...++.-..+|.++=|-+..+ +.. ..+...+...|+++.|
T Consensus 80 ----I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy 155 (282)
T PF15492_consen 80 ----IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY 155 (282)
T ss_pred ----cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence 01111122 2345677766432 235677778888888876432 222 3333335789999999
Q ss_pred eCCCCeEEEEEeCCC
Q 035500 586 SHHSPLCLLLLHLTT 600 (606)
Q Consensus 586 sP~g~~LLaTgS~Dg 600 (606)
+|...-++++|....
T Consensus 156 ~p~h~LLlVgG~~~~ 170 (282)
T PF15492_consen 156 HPKHRLLLVGGCEQN 170 (282)
T ss_pred cCCCCEEEEeccCCC
Confidence 999886666665544
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.55 E-value=5.4 Score=43.46 Aligned_cols=149 Identities=14% Similarity=0.101 Sum_probs=96.4
Q ss_pred eeEEEEcCCCCCEEEEEeC---CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL---DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~---DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
+..++++| ++..+..+.. +++|.+.|..+++...... .|- .+ .++++.|.+....++-+.+++|.+.|.....
T Consensus 118 P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 118 PVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred CceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence 66789999 6655555544 7999999999988887743 343 23 8999999544355555689999999966632
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeEE-EcCCCCCCeEEEEEeCCCCeE
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKPLQL-FTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~v~~-l~~gH~~~I~sV~fsP~g~~L 592 (606)
... ............-..+.+.|++..+...-.. +.+...|..++..... ...+-. .-..+..+|.|.++
T Consensus 194 v~~-----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~ 267 (381)
T COG3391 194 VVR-----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAA 267 (381)
T ss_pred eec-----cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEE
Confidence 100 0000011222334678899999865555433 6999999998877654 331222 45668889999876
Q ss_pred EEEEeC
Q 035500 593 LLLLHL 598 (606)
Q Consensus 593 LaTgS~ 598 (606)
.+.-+.
T Consensus 268 yv~~~~ 273 (381)
T COG3391 268 YVANSQ 273 (381)
T ss_pred EEEecC
Confidence 665343
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=2.8 Score=45.57 Aligned_cols=134 Identities=7% Similarity=-0.000 Sum_probs=82.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
++.++.++.+|.+..+|..+|+.+..... +. ...+.. .+..++.++.||.+..+|..++.. .|...
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~~---~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~---~W~~~---- 321 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY-GS---VNDFAV---DGGRIYLVDQNDRVYALDTRGGVE---LWSQS---- 321 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC-CC---ccCcEE---ECCEEEEEcCCCeEEEEECCCCcE---EEccc----
Confidence 45677788899999999999988765442 11 112222 235788888999999999887421 11000
Q ss_pred EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE-EEEeCCCCeEEEEEeCCCeEEE
Q 035500 530 TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV-AKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 530 t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s-V~fsP~g~~LLaTgS~DgtIRc 604 (606)
... .....+... .+..++.++.||.+...|..+|+.+...+. ....+.+ -.+ .+.. +..++.||.+-+
T Consensus 322 ~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~-~~~~~~s~P~~--~~~~-l~v~t~~G~l~~ 390 (394)
T PRK11138 322 DLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV-DSSGFLSEPVV--ADDK-LLIQARDGTVYA 390 (394)
T ss_pred ccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-CCCcceeCCEE--ECCE-EEEEeCCceEEE
Confidence 000 111111112 267888899999999999999998877763 2233332 122 2333 556788887765
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.2 Score=49.51 Aligned_cols=144 Identities=9% Similarity=0.045 Sum_probs=85.7
Q ss_pred EEEEcCCCCCEEEEE---eCC-CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 442 QFEYNPSNPSLMAFG---TLD-GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 442 slafsP~dg~~LaSG---s~D-GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
.=+|+| ++..++-. ... ..+.++|+.+++........++ -..-+|+|++...+++...||...||-+.....
T Consensus 197 ~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 197 TPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred ccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 345888 66555443 222 4589999998776655554444 345689997666678888899777775554321
Q ss_pred CcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEe-CCCc--EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 518 KVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASG-YSKN--VALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs-~Dg~--I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
. ...+.+... -..=.|+|+|+.++-.+ ..|. |.++|...+...+.-. +...-..-.|+|+|.+++
T Consensus 273 --------~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--~~~~~~~p~~SpdG~~i~ 341 (425)
T COG0823 273 --------N-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--SGGGNSNPVWSPDGDKIV 341 (425)
T ss_pred --------c-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--cCCCCcCccCCCCCCEEE
Confidence 1 111222211 22556899998666554 4454 6666776665533222 222222778999999877
Q ss_pred EEEeCCC
Q 035500 594 LLLHLTT 600 (606)
Q Consensus 594 aTgS~Dg 600 (606)
..+..+|
T Consensus 342 ~~~~~~g 348 (425)
T COG0823 342 FESSSGG 348 (425)
T ss_pred EEeccCC
Confidence 7664433
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.25 Score=49.65 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcc
Q 035500 449 NPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSS 527 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~ 527 (606)
-+..++.|+.+|.|.+|++.- |.....+. .-...|-+..-.-..+.+..+++.||.|+.|++.-.+ -
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~--s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k----------~ 136 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVC--SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK----------V 136 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhh--cccccceeccccccccceeEEeccCCceeeeccccCc----------e
Confidence 345889999999999999872 22211111 1122333333333345588999999999999987632 1
Q ss_pred eEEeecC--CCeEEEEEccCCCEEEEE--eCCCcEEEEECCC
Q 035500 528 VATYYDF--EQLTSVHVNSTDDQFLAS--GYSKNVALYDINT 565 (606)
Q Consensus 528 i~t~~~~--~~V~sV~~sp~g~~LaSg--s~Dg~I~IWDlrt 565 (606)
+-...++ .++.....+..+..++.+ |.|..++.|++..
T Consensus 137 ~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 137 LGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 1111122 334444444455566666 6666777776653
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.25 Score=37.52 Aligned_cols=32 Identities=38% Similarity=0.506 Sum_probs=27.7
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV 472 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~ 472 (606)
+|.+++|+| ..+++|.|+.||.|.++.+ +++.
T Consensus 13 ~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 13 RVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred cEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 378999999 8889999999999999998 4443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.04 Score=64.79 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=49.8
Q ss_pred EEccccchhc--cccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCC
Q 035500 130 LILRATNIRK--LNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLP 198 (606)
Q Consensus 130 ~~~~~~~~~~--l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~ 198 (606)
|.|.+|++-. ...+-.|.+|..|+|. .|+|++|+.-|+.-++-|+-|.+.+|+.++|-+|+|.+..|.
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLs-yNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLS-YNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLH 433 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeec-ccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhH
Confidence 3444444432 1233367888888888 788888888888888888888888888888888888765533
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.67 E-value=3.4 Score=43.25 Aligned_cols=164 Identities=11% Similarity=0.137 Sum_probs=103.8
Q ss_pred CceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 434 GNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 434 G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
|+... ++++.|+| +.+.+.+......--||=...|+.+.++++.+- ..--+|.|.. ++.+.++-=.++++.++.+.
T Consensus 83 g~~~n-vS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 83 GETAN-VSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIG-GNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccc-ccceeeCC-CcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEec-CCEEEEEehhcceEEEEEEc
Confidence 33334 78899999 667777777777777887778999999887662 2345677774 44556666678888888877
Q ss_pred CCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-e--eEEEcCCC-------CCCeEE
Q 035500 514 HIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK-P--LQLFTDMH-------REPINV 582 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k-~--v~~l~~gH-------~~~I~s 582 (606)
...........+-++....+ ....-.++|.|.+..|..+=+-+=+.||-...+. . +.... .+ -..|..
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~-~~~~~~~~f~~DvSg 237 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL-DPTADRDLFVLDVSG 237 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc-CcccccceEeecccc
Confidence 64321111111112222233 3448899999999877777666666666555432 1 11111 12 234677
Q ss_pred EEEeCCCCeEEEEEeCCCeE
Q 035500 583 AKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~DgtI 602 (606)
+.|++...++++-+.+++.+
T Consensus 238 l~~~~~~~~LLVLS~ESr~l 257 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRL 257 (316)
T ss_pred ceecCCCCcEEEEecCCceE
Confidence 88888877788877777654
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.014 Score=63.91 Aligned_cols=145 Identities=14% Similarity=0.206 Sum_probs=103.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+....|-|.+++ ++.|+.+..|..||-. |+..... .-++....++|..+.+..++.+-..+.+.+||+.+...
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~---n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-- 109 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILEL---NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-- 109 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhh-cceeccc---CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH--
Confidence 445678885555 8888899999999965 3333222 23556788999986666677778889999999987421
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
....+.+..+-.-.+|++....++.|-..|.+.||...+.+.+.... .|..++++++|.+.+. .+.++.|
T Consensus 110 -------qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~--vil~dcd 179 (615)
T KOG2247|consen 110 -------QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDY--VILCDCD 179 (615)
T ss_pred -------HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccce--eeecCcH
Confidence 11122222222226788888888888888999999999887766665 3999999999999875 4556666
Q ss_pred Ce
Q 035500 600 TM 601 (606)
Q Consensus 600 gt 601 (606)
.+
T Consensus 180 ~~ 181 (615)
T KOG2247|consen 180 NT 181 (615)
T ss_pred HH
Confidence 54
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.85 Score=50.82 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=65.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
...+.|.+ .+ .+|+-...++|.|+.--+......++. + ..+..+-. |..|...+. +.|.+||+.+
T Consensus 71 g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~-~--~~~~~If~----G~LL~~~~~-~~i~~yDw~~----- 135 (443)
T PF04053_consen 71 GLSFVWSS-RN-RYAVLESSSTIKIYKNFKNEVVKSIKL-P--FSVEKIFG----GNLLGVKSS-DFICFYDWET----- 135 (443)
T ss_dssp -SEEEE-T-SS-EEEEE-TTS-EEEEETTEE-TT------S--S-EEEEE-----SSSEEEEET-TEEEEE-TTT-----
T ss_pred eeEEEEec-Cc-cEEEEECCCeEEEEEcCccccceEEcC-C--cccceEEc----CcEEEEECC-CCEEEEEhhH-----
Confidence 45678988 44 577777789999974222222222222 1 12333322 355555554 4899999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-----------ceeEEEcCCCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE-----------KPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-----------k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
...++..... +|..|.|++++++++-.+.+ .+.|++.... .....+. .-...|.+..|.-+
T Consensus 136 -----~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 136 -----GKLIRRIDVS-AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED 207 (443)
T ss_dssp -------EEEEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT
T ss_pred -----cceeeEEecC-CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEE-EecceeEEEEEEcC
Confidence 3456666544 38999999999999998864 7777765543 0222222 12467888888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.044 Score=51.32 Aligned_cols=119 Identities=18% Similarity=0.104 Sum_probs=94.6
Q ss_pred CCcccchhHHHHHHHHhhccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCc
Q 035500 82 RPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSL 160 (606)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~ 160 (606)
|+|-|-.-|=.--|-.-|+-|..++|+||.| |+|=..+.+.=..-.+|||+.|+|+.+. -+-..+-|..||+. .|++
T Consensus 35 ssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~-~N~l 112 (177)
T KOG4579|consen 35 SSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR-FNPL 112 (177)
T ss_pred ccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc-cCcc
Confidence 6776653333333445688999999999988 4566777777667788999999999885 35578899999999 7888
Q ss_pred ccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 161 ASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 161 ~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
.-+++-.|. +-+|-.|..-+|.++.+-++ +=-+.+|.|..|+
T Consensus 113 ~~~p~vi~~-L~~l~~Lds~~na~~eid~d-l~~s~~~al~~lg 154 (177)
T KOG4579|consen 113 NAEPRVIAP-LIKLDMLDSPENARAEIDVD-LFYSSLPALIKLG 154 (177)
T ss_pred ccchHHHHH-HHhHHHhcCCCCccccCcHH-HhccccHHHHHhc
Confidence 888877666 88999999999999999776 5557789999887
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=92.41 E-value=3.3 Score=46.99 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=69.3
Q ss_pred CCCCCEEEEEEeeCC---CCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCe--EEEEEccCCCEEEEEeC
Q 035500 480 GGTNSVLGLCWLKKY---PSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQL--TSVHVNSTDDQFLASGY 554 (606)
Q Consensus 480 gH~~~V~~L~fsp~~---~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V--~sV~~sp~g~~LaSgs~ 554 (606)
|.-.-|.++.|.|.. ...+++...-+.|.+|-+-......+.+. ......+...-+| ....|||....++.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l-~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLL-MSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccce-eeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 333459999998842 22466677788999999874221111110 0011111112222 45669999988777665
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 555 SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 555 Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...--+++++.............+.|.|.+|.++|..++++-+
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvG 175 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVG 175 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeC
Confidence 5454567777543322222124689999999999998766544
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=92.18 E-value=14 Score=40.18 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=68.3
Q ss_pred eeEEEEcCCCCCEEEEE-eCCC----cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC----------
Q 035500 440 PRQFEYNPSNPSLMAFG-TLDG----EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS---------- 504 (606)
Q Consensus 440 V~slafsP~dg~~LaSG-s~DG----tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D---------- 504 (606)
+..+.++| +++++|.+ +..| +++|+|+++|+.+... +.. . ....+.|.+++...+++...+
T Consensus 126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~-~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IEN-P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEE-E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccc-c-ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 55678999 88888865 4444 5999999999776522 111 1 122399998544444444322
Q ss_pred CeEEEEeCCCCCCCcccccCCcceEEeecC--CC-eEEEEEccCCCEEEEE-eCC---CcEEEEECCCC
Q 035500 505 GCVRLFDLNHIPPKVADARGNSSVATYYDF--EQ-LTSVHVNSTDDQFLAS-GYS---KNVALYDINTE 566 (606)
Q Consensus 505 gtIklWDl~~~~~~~~~l~~~~~i~t~~~~--~~-V~sV~~sp~g~~LaSg-s~D---g~I~IWDlrt~ 566 (606)
..|..|.+.+.. ......+... .. ...+..++++++++.. +.. ..+.+.|+..+
T Consensus 202 ~~v~~~~~gt~~--------~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQ--------SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-G--------GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCCh--------HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 237777777632 1223455542 22 5688899999865543 332 35788888874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=92.12 E-value=3.2 Score=47.82 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=37.0
Q ss_pred CCcEEEEECCC-----CceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 555 SKNVALYDINT-----EKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 555 Dg~I~IWDlrt-----~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++.|.+.|.++ .+.+..++. ....+.+.++|+|+++++++..+.+|..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVanklS~tVSV 347 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCCCCcEEE
Confidence 35689999988 355666663 4667789999999999999988887753
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.2 Score=58.23 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=59.1
Q ss_pred ceEEEccCccccchHHHhhccCCCceeEEEccccchh-ccc-cccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 102 LRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIR-KLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
++.++|+++.+.-..-.+++. =-.=+.|+|++|.+. .+. .++.+.+|++|+|. +|+++..-.+.|..|++|+.|.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs-~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS-YNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECC-CCCCCCCCchHHhcCCCCCEEEC
Confidence 445566665553222222222 123477999999987 554 57899999999999 78888655567999999999999
Q ss_pred cccccc
Q 035500 180 CETRIV 185 (606)
Q Consensus 180 ~~~~~~ 185 (606)
.+|++.
T Consensus 498 s~N~l~ 503 (623)
T PLN03150 498 NGNSLS 503 (623)
T ss_pred cCCccc
Confidence 999876
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.93 E-value=5.3 Score=42.39 Aligned_cols=155 Identities=13% Similarity=0.143 Sum_probs=93.0
Q ss_pred eceeEEEEcCCCCCEEEEEeC-----------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe
Q 035500 438 VRPRQFEYNPSNPSLMAFGTL-----------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC 506 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~-----------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt 506 (606)
.+.......| +|.+.++... -|.|+.+|. .+..+..+. +|-..-++|+|+|++..++++=+..+.
T Consensus 111 ~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~--~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 111 NRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD--DDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec--CcEEecCceEECCCCCEEEEEeCCCCe
Confidence 4455666788 6766655333 143444443 344444333 444556799999965455555566688
Q ss_pred EEEEeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCC-cEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 507 VRLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSK-NVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg-~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
|.-|++...... .........+.. ...--.++.-.+|.+.+++...| .|..|+.. ++.+..+.. ....+++++
T Consensus 187 i~r~~~d~~~g~---~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l-P~~~~t~~~ 261 (307)
T COG3386 187 IHRYDLDPATGP---IGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL-PVKRPTNPA 261 (307)
T ss_pred EEEEecCcccCc---cCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC-CCCCCccce
Confidence 887777631000 000111122221 23345566677788876555554 99999998 998888874 447888888
Q ss_pred Ee-CCCCeEEEEEeCCCe
Q 035500 585 FS-HHSPLCLLLLHLTTM 601 (606)
Q Consensus 585 fs-P~g~~LLaTgS~Dgt 601 (606)
|- |+...|++|+...+.
T Consensus 262 FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 262 FGGPDLNTLYITSARSGM 279 (307)
T ss_pred EeCCCcCEEEEEecCCCC
Confidence 84 666778888776643
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.92 E-value=10 Score=39.32 Aligned_cols=141 Identities=11% Similarity=0.059 Sum_probs=89.5
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccC
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARG 524 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~ 524 (606)
.-+....+++.|+-.|.+.--|..+|+....-.+ +. .+-+-+.- -++.++-|...|-+.+-+++++.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~--RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs-------- 84 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GV--RIECSAIV--VGDFVVLGCYSGGLYFLCVKTGS-------- 84 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhh-Cc--eeeeeeEE--ECCEEEEEEccCcEEEEEecchh--------
Confidence 3344556888899999999999999998774432 21 23322222 23578899999999999999852
Q ss_pred CcceEEeecCCCeE-EEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCe
Q 035500 525 NSSVATYYDFEQLT-SVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 525 ~~~i~t~~~~~~V~-sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
..-.+..-+.|. .-...+++.++..|+.|++.+..|+++...+...+-+ .+..-+=+.+|....++++......
T Consensus 85 --~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg-G~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 85 --QIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG-GGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred --heeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccC-CceeccceecCCCceEEEEeccceE
Confidence 222333222221 2235678999999999999999999998888776521 1222223445533444544443333
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.075 Score=57.48 Aligned_cols=128 Identities=12% Similarity=0.076 Sum_probs=90.5
Q ss_pred eeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 127 CHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
-.+++|+-|++-.+. -+.++.-|.|..+- ++.+-++..---+.+|+||+|++.+|-...|.+....|.. |++|..
T Consensus 390 Vt~VnfskNqL~elPk~L~~lkelvT~l~l-snn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~---Lq~Lnl 465 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRLVELKELVTDLVL-SNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVR---LQTLNL 465 (565)
T ss_pred eEEEecccchHhhhhhhhHHHHHHHHHHHh-hcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhh---hheecc
Confidence 457899999998886 55677788888777 8888888877788999999999999999988776665554 555531
Q ss_pred ceecccCCCCCcccCCcccccCCCCCCcCCCc----hhhHHHhhc----cccCcccchhhhcccchhhhhccCCCCCCCc
Q 035500 206 QMCLCCKDTGPCRASLDAKNQASGADDRVKDN----EDQIVCKKF----RDADEVELPKYLRTMNLMELSSCLSPNLNGH 277 (606)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 277 (606)
. .+|++-. -++..-||+ .|...+|-+ |..-|++|++|+++||.+
T Consensus 466 S------------------------~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~----~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 466 S------------------------FNRFRMLPECLYELQTLETLLASNNQIGSVDPS----GLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred c------------------------ccccccchHHHhhHHHHHHHHhccccccccChH----HhhhhhhcceeccCCCch
Confidence 1 1111111 111122433 566667666 666789999999999988
Q ss_pred ceecccccC
Q 035500 278 AEMLDEVND 286 (606)
Q Consensus 278 ~~~~~~~~~ 286 (606)
--|-..++.
T Consensus 518 q~IPp~Lgn 526 (565)
T KOG0472|consen 518 QQIPPILGN 526 (565)
T ss_pred hhCChhhcc
Confidence 777766654
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=91.10 E-value=14 Score=37.54 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=78.4
Q ss_pred CCCEEEEEeCCCcEEEEECC-CCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcc
Q 035500 449 NPSLMAFGTLDGEVIVINHE-NGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSS 527 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~-tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~ 527 (606)
.++.++.|+.+| +.+++.. ....... .+...|..+...|. -+.++.-+ |+.+.++++..............+
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i----~~~~~I~ql~vl~~-~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI----LKLSSITQLSVLPE-LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE----eecceEEEEEEecc-cCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 567999999999 9999983 2333332 22334999999884 34555444 599999998874332110000000
Q ss_pred -----eEEeecCCCeEEEE--EccCCCEEEEEeCCCcEEEEECCCC-----ceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 528 -----VATYYDFEQLTSVH--VNSTDDQFLASGYSKNVALYDINTE-----KPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 528 -----i~t~~~~~~V~sV~--~sp~g~~LaSgs~Dg~I~IWDlrt~-----k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.........+...+ -...+.........++|.+|..... +..+++. -...+.+++|.+ .. ++.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~~--~~-i~v 153 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFLG--NK-ICV 153 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEeC--CE-EEE
Confidence 00111122233333 1123333334444468888877653 4556666 358889999983 33 445
Q ss_pred EeCCCe
Q 035500 596 LHLTTM 601 (606)
Q Consensus 596 gS~Dgt 601 (606)
|..++.
T Consensus 154 ~~~~~f 159 (275)
T PF00780_consen 154 GTSKGF 159 (275)
T ss_pred EeCCce
Confidence 544443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.71 Score=35.04 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=29.0
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 035500 534 FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK 567 (606)
Q Consensus 534 ~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k 567 (606)
...|..++|+|..+++|.|+.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 345999999999999999999999999988 443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.92 E-value=6 Score=45.82 Aligned_cols=144 Identities=10% Similarity=-0.025 Sum_probs=73.5
Q ss_pred eeEEEEcCCCCCEEEEEe------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-CeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGT------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-GCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-gtIklWDl 512 (606)
+.+.+++| +++.+|..- .|+.-.+|=...+.....+. .+. ....-.|+| ++..+++.+.. ..+++.+-
T Consensus 352 vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 352 ITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-EGH--SLTRPSWSL-DADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-cCC--CCCCceECC-CCCceEEEecCcceEEEecc
Confidence 66788999 888777665 34444444332222222221 132 377788998 44556555432 12222221
Q ss_pred CCCCC-CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEE---EECCCCce----eEEEcCCCCCCeEEEE
Q 035500 513 NHIPP-KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVAL---YDINTEKP----LQLFTDMHREPINVAK 584 (606)
Q Consensus 513 ~~~~~-~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~I---WDlrt~k~----v~~l~~gH~~~I~sV~ 584 (606)
..... ......+..... .....|.++.|+|+|..++... ++.|.+ -....|.. .+.+..+-...+.++.
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 11000 000000011111 2345699999999998777655 366766 33333431 1223312334468899
Q ss_pred EeCCCCe
Q 035500 585 FSHHSPL 591 (606)
Q Consensus 585 fsP~g~~ 591 (606)
|.+++.-
T Consensus 504 W~~~~~L 510 (591)
T PRK13616 504 WRTGDSL 510 (591)
T ss_pred EecCCEE
Confidence 9998873
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.63 E-value=1 Score=53.88 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=65.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
-+..+|.|++.|.|-..|+... ..+......-.++|++++|+. ++..++.|-.+|-|.+||+..+ +.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~----------k~l 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRA----------KIL 165 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCC----------cce
Confidence 4457899999999999887642 221122223467899999996 7788999999999999999984 344
Q ss_pred EEeec-CCC---eEEEEEccCCCEEEEEeCCCc
Q 035500 529 ATYYD-FEQ---LTSVHVNSTDDQFLASGYSKN 557 (606)
Q Consensus 529 ~t~~~-~~~---V~sV~~sp~g~~LaSgs~Dg~ 557 (606)
+.+.. ..+ |..+.|-.++..+.++..-|.
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 44432 222 444445445556666666564
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=90.20 E-value=14 Score=38.96 Aligned_cols=145 Identities=11% Similarity=0.067 Sum_probs=82.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|++++-- .+ .+++|. ++.|.+|++...+ ....... .....+.++.... ++++.|.....+.++..+...
T Consensus 91 V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~-~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~-- 160 (321)
T PF03178_consen 91 VTAICSF--NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFY-DSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEEN-- 160 (321)
T ss_dssp EEEEEEE--TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTT--
T ss_pred ceEhhhh--CC-EEEEee-cCEEEEEEccCcccchhhhee-cceEEEEEEeccc---cEEEEEEcccCEEEEEEEccC--
Confidence 5555443 34 454444 4889999998777 4443322 2334677777763 488888888888887655421
Q ss_pred cccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-------Cc--e--eEEEcCCCCCCeEEE-
Q 035500 519 VADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT-------EK--P--LQLFTDMHREPINVA- 583 (606)
Q Consensus 519 ~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt-------~k--~--v~~l~~gH~~~I~sV- 583 (606)
..+.... ....++++.+-++++.++.+..+|.+.++.... +. . ...+. ....|+++
T Consensus 161 -------~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~--lg~~v~~~~ 231 (321)
T PF03178_consen 161 -------NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH--LGDIVNSFR 231 (321)
T ss_dssp -------E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE---SS-EEEEE
T ss_pred -------CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE--CCCccceEE
Confidence 1122121 233488888886667999999999999987762 12 2 22333 34677777
Q ss_pred --EEeC--CCCe-----EEEEEeCCCeEE
Q 035500 584 --KFSH--HSPL-----CLLLLHLTTMSR 603 (606)
Q Consensus 584 --~fsP--~g~~-----LLaTgS~DgtIR 603 (606)
++.| .+.. .++-++.+|.|=
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEE
Confidence 5555 2221 355566676654
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=89.92 E-value=4.2 Score=43.01 Aligned_cols=104 Identities=10% Similarity=0.068 Sum_probs=68.5
Q ss_pred CEEEEEEeeCCCCEEEEEECCCeE-EEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC-----Cc
Q 035500 484 SVLGLCWLKKYPSKLVAGSDSGCV-RLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-----KN 557 (606)
Q Consensus 484 ~V~~L~fsp~~~~~LaSgS~DgtI-klWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D-----g~ 557 (606)
...+++.+|..+..++-+-.-|+. .+||.+++..... +. ..+-+.|.+ .-.|+++|+++++.-.| |.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~-~~-a~~gRHFyG-----Hg~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR-LW-APPGRHFYG-----HGVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE-Ec-CCCCCEEec-----CEEEcCCCCEEEEeccccCCCcEE
Confidence 345677788666667777776654 4799988532110 00 111122222 35599999999988444 89
Q ss_pred EEEEECC-CCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 558 VALYDIN-TEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 558 I~IWDlr-t~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
|-+||.+ +-+.+.++. .|.-.-..+.+.|+++.|++.
T Consensus 79 IgVyd~~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFP-SHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EEEEECcCCcEEEeEec-CCCcChhhEEEcCCCCEEEEE
Confidence 9999999 446678888 566666789999999765554
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.58 E-value=2.1 Score=47.53 Aligned_cols=139 Identities=11% Similarity=0.168 Sum_probs=77.9
Q ss_pred EEEcCCCCCEEEE-EeCCCcEEEE--ECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 443 FEYNPSNPSLMAF-GTLDGEVIVI--NHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 443 lafsP~dg~~LaS-Gs~DGtVrIW--Di~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
-+|+| ||+.+|. ...||...|| |..++.... +. .-.+.-..=.|+|++...+++.+..|.-.||-..-...
T Consensus 243 P~fsp-DG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt--~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-- 316 (425)
T COG0823 243 PAFSP-DGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LT--NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-- 316 (425)
T ss_pred ccCCC-CCCEEEEEECCCCCccEEEEcCCCCccee-cc--cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC--
Confidence 36999 7766665 4556665555 555554322 11 11222225678996655566667777666665554221
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC-Cc--EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-KN--VALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D-g~--I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.....++...... .-.|+|+|.+++..+.. |. |.+.|+.++...+.+. +......-.|.|++..++.+
T Consensus 317 -----~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 317 -----QVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred -----ceeEeeccCCCCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEe
Confidence 1112233332222 56689999987776643 44 7777887766555554 33444455666666654443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=89.52 E-value=6.6 Score=45.59 Aligned_cols=112 Identities=9% Similarity=0.060 Sum_probs=72.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCCcccccCCcc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSS 527 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~ 527 (606)
-+...++-+...++.|||...+.......+ ...+.|.++.|... ++..+++.|..+.|.++--....-... .+...+
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~-~p~w~~ 117 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK-GPSWAP 117 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC-Ccccce
Confidence 333444445556789999988775443333 55778999999642 456788899999999987532111100 111334
Q ss_pred eEEee---c-CCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 035500 528 VATYY---D-FEQLTSVHVNSTDDQFLASGYSKNVALYDIN 564 (606)
Q Consensus 528 i~t~~---~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr 564 (606)
+..+. + ..+|.+..|.++|.+++++| +.+.|+|-.
T Consensus 118 i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 118 IRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred eEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 44443 2 35699999999988887666 568888654
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.38 E-value=1.5 Score=52.80 Aligned_cols=132 Identities=10% Similarity=0.043 Sum_probs=87.2
Q ss_pred EeCCCcEEEEECCCCceEE---EEeccC------CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCc
Q 035500 456 GTLDGEVIVINHENGNVAC---YIPSIG------GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNS 526 (606)
Q Consensus 456 Gs~DGtVrIWDi~tg~~v~---~~~~~g------H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~ 526 (606)
.+.+-.|.+||+++-..-. ...+.. ....+.++.|+|.-+...+.+..|+.|++.-+.... .
T Consensus 120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~---------~ 190 (1405)
T KOG3630|consen 120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA---------Q 190 (1405)
T ss_pred ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhh---------h
Confidence 3344477889976522211 111112 223456888999777778889999999998877632 2
Q ss_pred ceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc---CCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 527 SVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT---DMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 527 ~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~---~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.+.++.....+++|+|+|.|..++.|-..|++.-|-..-. ....++ ..-...|.+|.|--...++++-+-
T Consensus 191 ~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n 263 (1405)
T KOG3630|consen 191 NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVVYGN 263 (1405)
T ss_pred hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEEecc
Confidence 3344555566899999999999999999999999976532 222222 112368999999877776655443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=89.32 E-value=30 Score=35.98 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=27.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCC--cEEEEECCCCceEEEEec
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG--EVIVINHENGNVACYIPS 478 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG--tVrIWDi~tg~~v~~~~~ 478 (606)
.-.+.|.. ++.++-+.+.-| .|+.+|..+|+......+
T Consensus 47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l 86 (264)
T PF05096_consen 47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPL 86 (264)
T ss_dssp EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-
T ss_pred CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC
Confidence 44567755 677778877776 788999999988765554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=89.31 E-value=3.9 Score=47.17 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=83.5
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC------CeEEEEeCCCCC
Q 035500 449 NPSLMAFGTLDG------EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS------GCVRLFDLNHIP 516 (606)
Q Consensus 449 dg~~LaSGs~DG------tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D------gtIklWDl~~~~ 516 (606)
.+.+++.||.++ .|..+|..++........ .+.....+++... +...++||.| .++-.||.++.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~- 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-PSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTN- 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-CcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCC-
Confidence 566778888774 678899888765543333 3444456666663 3678889998 35666776663
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC-----cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK-----NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg-----~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
.|....+..+-+....+..+ .|.+.|.||.|| ++-.||.++.+=-..-+ +.......+...-+..
T Consensus 360 ----~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 ----QWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGK 429 (571)
T ss_pred ----ceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECCE
Confidence 23323333333333333333 577888999885 47788888764211111 1123333333334566
Q ss_pred EEEEEeCCCeEE
Q 035500 592 CLLLLHLTTMSR 603 (606)
Q Consensus 592 LLaTgS~DgtIR 603 (606)
+.+.||.|+.-+
T Consensus 430 iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 430 LYIIGGGDGSSN 441 (571)
T ss_pred EEEEcCcCCCcc
Confidence 899999887653
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.94 E-value=22 Score=38.77 Aligned_cols=149 Identities=15% Similarity=0.102 Sum_probs=92.7
Q ss_pred eeEEEEcCCCC-CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNP-SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg-~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+..+.+.| ++ +..++-.....+.+.+... .........+- ..-.++..++.+....++...++.|.+.|....
T Consensus 33 ~~~v~~~~-~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~-~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--- 106 (381)
T COG3391 33 PGGVAVNP-DGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGG-VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN--- 106 (381)
T ss_pred CceeEEcC-ccCEEEEEeecCceeeeccccc-ceeeeeccCCC-ccccceeeCCCCCeEEEecCCCCeEEEEcCccc---
Confidence 34456777 44 3333333333566666552 22222111111 234567777755556666677789999996652
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC---CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY---SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~---Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
....+..-...-..+++.|+++.+..+.. ++++.+.|..+.+.......+- .+ ..++++|+|..++++
T Consensus 107 -------~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~ 177 (381)
T COG3391 107 -------TVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVT 177 (381)
T ss_pred -------ceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEE
Confidence 22333332235678889999976655544 6899999999998887766432 23 889999999988888
Q ss_pred EeCCCeEE
Q 035500 596 LHLTTMSR 603 (606)
Q Consensus 596 gS~DgtIR 603 (606)
-+.++++-
T Consensus 178 ~~~~~~v~ 185 (381)
T COG3391 178 NSDDNTVS 185 (381)
T ss_pred ecCCCeEE
Confidence 87777654
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=88.72 E-value=42 Score=36.99 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=40.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 535 EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 535 ~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
+++..|++||+++++|.-..+|.+.++...-.+...++...-......+.|.-++
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 4588999999999999999999999887776666666653334555667776544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=88.50 E-value=16 Score=39.41 Aligned_cols=149 Identities=10% Similarity=0.057 Sum_probs=80.0
Q ss_pred ceeEEEEcCCCCCEEEEEe-----------CCC-cEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC
Q 035500 439 RPRQFEYNPSNPSLMAFGT-----------LDG-EVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS 504 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs-----------~DG-tVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D 504 (606)
.++.|+|.+ +|++.++-. ..+ .|.+++-.. |+......+...-....+++|.+ ++ .++ ++..
T Consensus 15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 377899999 888777642 223 788886543 33322112223334568899987 44 444 4444
Q ss_pred CeEEEEeCCCCCCCcccccCCcce-EEeec-----CCCeEEEEEccCCCEEEEEeCC-------------------CcEE
Q 035500 505 GCVRLFDLNHIPPKVADARGNSSV-ATYYD-----FEQLTSVHVNSTDDQFLASGYS-------------------KNVA 559 (606)
Q Consensus 505 gtIklWDl~~~~~~~~~l~~~~~i-~t~~~-----~~~V~sV~~sp~g~~LaSgs~D-------------------g~I~ 559 (606)
...++.|........ - ....+ ..+.. +.....+.|.|+|.+.++-+.. +.|.
T Consensus 91 ~i~~~~d~~gdg~ad--~-~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 91 DILFLRDKDGDDKAD--G-EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred eEEEEeCCCCCCCCC--C-ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 433344544321100 0 01111 11221 3447889999999876655521 3455
Q ss_pred EEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 560 LYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 560 IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
-+|..+++. ..+..++ ...+.++|+|+|. ++++-.
T Consensus 168 r~~pdg~~~-e~~a~G~-rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 168 RYNPDGGKL-RVVAHGF-QNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred EEecCCCeE-EEEecCc-CCCccceECCCCC-EEEEcc
Confidence 566655443 3333343 3456899999887 455533
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.45 E-value=6.1 Score=44.24 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=86.6
Q ss_pred EEEcCCCCCEEEE-EeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-------CCEEEEEECCCeEEEEeCCC
Q 035500 443 FEYNPSNPSLMAF-GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-------PSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 443 lafsP~dg~~LaS-Gs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-------~~~LaSgS~DgtIklWDl~~ 514 (606)
+-.+-++.+++.. |+.-..++--|++.|+.+.... -|... -+.|.|.. ...|+--| |..|.=-|.+.
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~--~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~ 546 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWD--LKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRA 546 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEee--cCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccc
Confidence 3345456666655 5555667778899999988776 34433 45666632 23454444 44444446655
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEcc----CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNS----TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp----~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
.. ..+..-..+..++.-.|+. .+.++|.||..|.|++||--..+.-..++ +-...|..|..+.+|.
T Consensus 547 ~g---------NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk 616 (776)
T COG5167 547 RG---------NKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGK 616 (776)
T ss_pred cC---------CceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCc
Confidence 31 1233223233333333333 35699999999999999865444444455 5668899999999999
Q ss_pred eEEEEEe
Q 035500 591 LCLLLLH 597 (606)
Q Consensus 591 ~LLaTgS 597 (606)
+++|||-
T Consensus 617 ~ilaTCk 623 (776)
T COG5167 617 HILATCK 623 (776)
T ss_pred EEEEeec
Confidence 9999874
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=88.30 E-value=4.3 Score=48.27 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=66.7
Q ss_pred CCEEEEEeCCCcEEEEECCCC--ceEEE-EeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCc
Q 035500 450 PSLMAFGTLDGEVIVINHENG--NVACY-IPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNS 526 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg--~~v~~-~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~ 526 (606)
+.....|-.+..+..||.+-. +.+.. ...........|++-. ..+++|.||.+|.||+||--. ..
T Consensus 542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g----------~~ 609 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLG----------KR 609 (794)
T ss_pred CCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccc----------hh
Confidence 345567888888999998753 22221 1111223345555544 457899999999999999332 12
Q ss_pred ceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 035500 527 SVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDI 563 (606)
Q Consensus 527 ~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDl 563 (606)
.-..+.+ ..+|.+|..+.+|.++++.+. ..+.++|.
T Consensus 610 AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 610 AKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred hhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 2233444 688999999999998877765 56777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=88.27 E-value=6.8 Score=45.49 Aligned_cols=87 Identities=15% Similarity=0.260 Sum_probs=56.6
Q ss_pred EEEEEEC-CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEc--cCCCEEEEEeCCCcEEEEECC-----CC--
Q 035500 497 KLVAGSD-SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVN--STDDQFLASGYSKNVALYDIN-----TE-- 566 (606)
Q Consensus 497 ~LaSgS~-DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~s--p~g~~LaSgs~Dg~I~IWDlr-----t~-- 566 (606)
+++.... ..++.|||.+.+. -..-.++..++.|.++.|. |+++.+.+.|..+.|.+|--. ..
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~--------lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGV--------LEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcE--------EEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 4444433 4478999998842 1122344557789999996 457889999999999998542 12
Q ss_pred --ceeEEEcC-CCC-CCeEEEEEeCCCCe
Q 035500 567 --KPLQLFTD-MHR-EPINVAKFSHHSPL 591 (606)
Q Consensus 567 --k~v~~l~~-gH~-~~I~sV~fsP~g~~ 591 (606)
.+++.+.. .|+ .+|.+..|-++|..
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~L 142 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTL 142 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeE
Confidence 12333221 244 68999999999873
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=88.27 E-value=4.6 Score=44.59 Aligned_cols=136 Identities=13% Similarity=0.015 Sum_probs=67.0
Q ss_pred eCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEee--CCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-
Q 035500 457 TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLK--KYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD- 533 (606)
Q Consensus 457 s~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp--~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~- 533 (606)
....++.+||+.+.+.++++.+-........|.|.. ....-++.+....+|-.|--..... |. .+.+.....
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~----W~-a~kVi~ip~~ 293 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE----WA-AEKVIDIPAK 293 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE----EE-EEEEEEE--E
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC----ee-eeEEEECCCc
Confidence 356789999999999999888633233567888854 2222366666666665554322110 11 001111110
Q ss_pred -----------------CCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCc---eeEEEcCC-------C--------C
Q 035500 534 -----------------FEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEK---PLQLFTDM-------H--------R 577 (606)
Q Consensus 534 -----------------~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k---~v~~l~~g-------H--------~ 577 (606)
..-|++|..|.++++|..+ -.+|.|+.||+.... .+-.+..| | .
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 1227999999999866655 568999999998642 22222211 0 1
Q ss_pred CCeEEEEEeCCCCeEEEEEe
Q 035500 578 EPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 578 ~~I~sV~fsP~g~~LLaTgS 597 (606)
+....+..|.+|+.+.+|.|
T Consensus 374 GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp S----EEE-TTSSEEEEE--
T ss_pred CCCCeEEEccCCeEEEEEee
Confidence 23467889999999888876
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=87.82 E-value=7.3 Score=42.83 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=71.6
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE-------------------------EEe----------------
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC-------------------------YIP---------------- 477 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~-------------------------~~~---------------- 477 (606)
.|..+.|.+ +..-+|.|...|.|-||-+...+... .+.
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 377888998 66689999999999998754321110 000
Q ss_pred ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEE-------ee--cCCCeEEEEEcc----
Q 035500 478 SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVAT-------YY--DFEQLTSVHVNS---- 544 (606)
Q Consensus 478 ~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t-------~~--~~~~V~sV~~sp---- 544 (606)
.....++|++++.+ +-..++.|..+|++.|.|+|... -+.. .. ....++++.|..
T Consensus 82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPa----------vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPA----------VIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTE----------EEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCe----------EEeeccccccccccccccCeeEEEEEEEecC
Confidence 12246889999987 45789999999999999998731 1111 11 123377888872
Q ss_pred -CC---CEEEEEeCCCcEEEEECC
Q 035500 545 -TD---DQFLASGYSKNVALYDIN 564 (606)
Q Consensus 545 -~g---~~LaSgs~Dg~I~IWDlr 564 (606)
++ -.++.|...|.+.+|.+-
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEE
T ss_pred CCcccceEEEEEeCCCCEEEEEEe
Confidence 22 378888889999999775
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=87.64 E-value=8.8 Score=41.76 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=62.7
Q ss_pred EEEEEEeeCCCCEE-EEEECCC----eEEEEeCCCCCCCcccccCCcceE-EeecCCCeEEEEEccCCCEEEEEeCC---
Q 035500 485 VLGLCWLKKYPSKL-VAGSDSG----CVRLFDLNHIPPKVADARGNSSVA-TYYDFEQLTSVHVNSTDDQFLASGYS--- 555 (606)
Q Consensus 485 V~~L~fsp~~~~~L-aSgS~Dg----tIklWDl~~~~~~~~~l~~~~~i~-t~~~~~~V~sV~~sp~g~~LaSgs~D--- 555 (606)
+...+++|+ ++++ ++-+..| +++++|+.++. .+. .+.. .....+.|.+++..|+....+
T Consensus 126 ~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~----------~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 126 LGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGK----------FLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTE----------EEEEEEEE-EESEEEEECTTSSEEEEEECSTTT
T ss_pred eeeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCc----------CcCCcccc-cccceEEEeCCCCEEEEEEeCccc
Confidence 335677884 4554 4545555 59999999842 221 1111 112339999998866555433
Q ss_pred --------CcEEEEECCCCce--eEEEcCCCCCC-eEEEEEeCCCCeEEEEEeCCCe
Q 035500 556 --------KNVALYDINTEKP--LQLFTDMHREP-INVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 556 --------g~I~IWDlrt~k~--v~~l~~gH~~~-I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
..|+.|.+.++.. ...++...... ...+..++++++++++.+....
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~ 250 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS 250 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS
T ss_pred ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc
Confidence 2378888887644 35555322233 6688899999998887766554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.35 E-value=0.19 Score=54.39 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=59.6
Q ss_pred EEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEccc-ccccchhhhhHHhhcCCchhhhhh
Q 035500 129 VLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCE-TRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 129 ~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~-~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
.|+|-.|.|+-+. .|+.+++|..|+|. +|.|+-|+++=|..++.|.+|.+-+ |+|..|-. .+..+|.+|+.|-.
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS-~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k--~~F~gL~slqrLll 147 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLS-KNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK--GAFGGLSSLQRLLL 147 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceeccc-ccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh--hHhhhHHHHHHHhc
Confidence 4677788888886 67788888888998 8889999888899999998888888 88888743 45667777777763
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.33 E-value=17 Score=37.16 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=68.4
Q ss_pred EEEEEeeCCCCEEEEEECCCeEEEEeC--CCCCCCcccccCCcceEEeec----CCC-eEEEEEccCCCEEEEEeCCCcE
Q 035500 486 LGLCWLKKYPSKLVAGSDSGCVRLFDL--NHIPPKVADARGNSSVATYYD----FEQ-LTSVHVNSTDDQFLASGYSKNV 558 (606)
Q Consensus 486 ~~L~fsp~~~~~LaSgS~DgtIklWDl--~~~~~~~~~l~~~~~i~t~~~----~~~-V~sV~~sp~g~~LaSgs~Dg~I 558 (606)
.+++|+.+.-...+.-|.+-+|.-||. .++.... +..+..++. ..+ --.+++.-.|+++++.-..++|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-----r~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-----RKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccC-----cceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE
Confidence 478898643334566688889988994 4432110 122222221 111 1233445568888888888999
Q ss_pred EEEECCCCceeEEEcCCCCCCeEEEEEe-CCCCeEEEEEeC
Q 035500 559 ALYDINTEKPLQLFTDMHREPINVAKFS-HHSPLCLLLLHL 598 (606)
Q Consensus 559 ~IWDlrt~k~v~~l~~gH~~~I~sV~fs-P~g~~LLaTgS~ 598 (606)
...|..+|+.+.++.. -+..|++++|- |+-..+.+|+..
T Consensus 236 ~~~dp~tGK~L~eikl-Pt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKL-PTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred EEECCCCCcEEEEEEc-CCCceEEEEecCCCccEEEEEehh
Confidence 9999999999999984 58999999995 332334555543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=87.16 E-value=29 Score=35.49 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=82.7
Q ss_pred eeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe-CCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGT-LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD-LNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD-l~~~~~ 517 (606)
+.+.+++| +++.+|... .++.-.+|-...+....... .+. .+..-.|+++ +...+....+...+++. ...+.
T Consensus 26 ~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~--~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~- 99 (253)
T PF10647_consen 26 VTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGG--SLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGT- 99 (253)
T ss_pred ccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCC--ccccccccCC-CCEEEEEcCCCceEEEEecCCCc-
Confidence 67889999 777776655 23333444433333322221 132 5778889985 45444445555666664 22211
Q ss_pred CcccccCCcceE-EeecC-CCeEEEEEccCCCEEEEEe---CCCcEEEEECCC---C------ceeEEEcCCCCCCeEEE
Q 035500 518 KVADARGNSSVA-TYYDF-EQLTSVHVNSTDDQFLASG---YSKNVALYDINT---E------KPLQLFTDMHREPINVA 583 (606)
Q Consensus 518 ~~~~l~~~~~i~-t~~~~-~~V~sV~~sp~g~~LaSgs---~Dg~I~IWDlrt---~------k~v~~l~~gH~~~I~sV 583 (606)
..++. ..... ..|.++.++|+|..++... .++.|.+--+.. + .+..... .....+..+
T Consensus 100 -------~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v 171 (253)
T PF10647_consen 100 -------GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDV 171 (253)
T ss_pred -------ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceee
Confidence 11111 11111 2799999999998666554 357777765542 2 1122222 234689999
Q ss_pred EEeCCCCeEEEEEeCCC
Q 035500 584 KFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~Dg 600 (606)
.|.+++..++++...+.
T Consensus 172 ~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 172 AWSDDSTLVVLGRSAGG 188 (253)
T ss_pred eecCCCEEEEEeCCCCC
Confidence 99999986555555554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.93 E-value=3.8 Score=47.25 Aligned_cols=142 Identities=14% Similarity=0.081 Sum_probs=77.0
Q ss_pred CCCEEEEEeCCCc-----EEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe------EEEEeCCCCCC
Q 035500 449 NPSLMAFGTLDGE-----VIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC------VRLFDLNHIPP 517 (606)
Q Consensus 449 dg~~LaSGs~DGt-----VrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt------IklWDl~~~~~ 517 (606)
+|.+.|.||.||. |-.||..+.+....-+ ......+......++...+.||.|+. +..||..+.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~-- 454 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN-- 454 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCC---CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC--
Confidence 7778889999975 5667877655433221 22223333333335567788886654 455665552
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC-----cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK-----NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg-----~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.|....+..+-+....+..+ ++.+.+.||.|+ +|..||.++.+-...-. -..+...+.....+..+
T Consensus 455 ---~W~~~~~M~~~R~~~g~a~~----~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~--m~~~rs~~g~~~~~~~l 525 (571)
T KOG4441|consen 455 ---TWTLIAPMNTRRSGFGVAVL----NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP--MTSPRSAVGVVVLGGKL 525 (571)
T ss_pred ---ceeecCCcccccccceEEEE----CCEEEEECCccCCCccceEEEEcCCCCceeEccc--CccccccccEEEECCEE
Confidence 23222222222222222222 467888888775 37789998775433211 12222223333345568
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
++.|+.|+.-++
T Consensus 526 y~vGG~~~~~~l 537 (571)
T KOG4441|consen 526 YAVGGFDGNNNL 537 (571)
T ss_pred EEEecccCcccc
Confidence 999999987554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.84 E-value=0.35 Score=51.49 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=26.7
Q ss_pred cccCccccEEEcccccccchhh--hhHHhhcCCchhhhhhceec
Q 035500 168 FSCMPYLMCLSMCETRIVNLWT--TTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 168 ~~~~p~l~~l~~~~~~~~~l~~--~~~~l~~~~~l~~l~~~~~~ 209 (606)
|...|.|+.|.|.+|-..-.-. -..+|+.+|.|+||+|..|+
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 5566777777777763321100 01356778889999988877
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.68 E-value=17 Score=38.63 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=84.0
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccC
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARG 524 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~ 524 (606)
|.|..+.++.+--..++|.-|+..+++... +. +.+.+.++..-- .+..|+++.. -+.+++......
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~---~p~~~~~~~~~d-~~g~Lv~~~~--g~~~~~~~~~~~------- 97 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRV-FP---SPGGFSSGALID-AGGRLIACEH--GVRLLDPDTGGK------- 97 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE---CCCCcccceeec-CCCeEEEEcc--ccEEEeccCCce-------
Confidence 888555577777788999999998776543 22 223344444432 3455665543 356677654221
Q ss_pred CcceEEee-c--CCCeEEEEEccCCCEEEEEeC------C-----CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 525 NSSVATYY-D--FEQLTSVHVNSTDDQFLASGY------S-----KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 525 ~~~i~t~~-~--~~~V~sV~~sp~g~~LaSgs~------D-----g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
...+.... . ....+.+...|+|.+.++... + |.++-+|. .+..++.+. .|-..-+.++|||+++
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~SpDg~ 175 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSPDGK 175 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECCCCC
Confidence 01111111 1 133678888999987665543 1 44555554 455565555 4556678899999999
Q ss_pred eEEEEEeCCCeE
Q 035500 591 LCLLLLHLTTMS 602 (606)
Q Consensus 591 ~LLaTgS~DgtI 602 (606)
.++++=+..+.|
T Consensus 176 tly~aDT~~~~i 187 (307)
T COG3386 176 TLYVADTPANRI 187 (307)
T ss_pred EEEEEeCCCCeE
Confidence 777766654433
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=86.52 E-value=19 Score=42.42 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=88.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEE------EEec----------------cCCCCCEEEEEEee-CCCCEEEEEECCCe
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVAC------YIPS----------------IGGTNSVLGLCWLK-KYPSKLVAGSDSGC 506 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~------~~~~----------------~gH~~~V~~L~fsp-~~~~~LaSgS~Dgt 506 (606)
.++++.|. .+.|.||+...-.... .+.. ..|. |.-+.... .+...|+.|.+||.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHt--IN~i~v~~lg~~EVLl~c~DdG~ 125 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHT--INFIKVGDLGGEEVLLLCTDDGD 125 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCce--eeEEEecccCCeeEEEEEecCCe
Confidence 45666655 7889999965422211 0000 1222 44443322 23467999999999
Q ss_pred EEEEeCCCCC----------CCcccccCCcceEEeecCCCeEEEEEc--cCCCEEEEEeCCCcEEEEECCCC--ceeEEE
Q 035500 507 VRLFDLNHIP----------PKVADARGNSSVATYYDFEQLTSVHVN--STDDQFLASGYSKNVALYDINTE--KPLQLF 572 (606)
Q Consensus 507 IklWDl~~~~----------~~~~~l~~~~~i~t~~~~~~V~sV~~s--p~g~~LaSgs~Dg~I~IWDlrt~--k~v~~l 572 (606)
|.+|....-- ..........|-..+.....++++++| ...+++|+++....|.+|-.... +....-
T Consensus 126 V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 126 VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 9999763210 000000112345566667789999999 77789999988888888866542 221111
Q ss_pred cCCCCCCeEEEEEeCCC--C---eEEEEEeCCCeEE
Q 035500 573 TDMHREPINVAKFSHHS--P---LCLLLLHLTTMSR 603 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g--~---~LLaTgS~DgtIR 603 (606)
...|...|.+|+|-++. + ..+++++=.|.+-
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~ 241 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVW 241 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEE
Confidence 22366789999998765 1 2466666666543
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=86.10 E-value=13 Score=41.87 Aligned_cols=131 Identities=11% Similarity=0.083 Sum_probs=69.9
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE------------------ECCCeEEEEeCC
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG------------------SDSGCVRLFDLN 513 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg------------------S~DgtIklWDl~ 513 (606)
.++.++.+|.+...|.++|+.+....... ..++..| ..++.+ ..+|.+.-.|..
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE-----QPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec-----cccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 68888999999999999999987654321 1112222 222221 134555555655
Q ss_pred CCCCCcccccCCcc--eEEeecCCCe--EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSS--VATYYDFEQL--TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~--i~t~~~~~~V--~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
+++. .|..... ........+. ..+. -.++.++.++.||.++.+|..+|+.+..++.+..-...-+.+..++
T Consensus 375 tG~~---~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g 449 (488)
T cd00216 375 TGKV---VWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNG 449 (488)
T ss_pred CCcE---eeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCC
Confidence 5321 0100000 0000000111 1121 1467888899999999999999999888774222222224444455
Q ss_pred CeEEEE
Q 035500 590 PLCLLL 595 (606)
Q Consensus 590 ~~LLaT 595 (606)
...+++
T Consensus 450 ~~yv~~ 455 (488)
T cd00216 450 KQYVGV 455 (488)
T ss_pred EEEEEE
Confidence 533433
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=85.41 E-value=2.6 Score=31.41 Aligned_cols=30 Identities=20% Similarity=0.473 Sum_probs=26.8
Q ss_pred eeEEEEcCCCC--CEEEEEeCCCcEEEEECCC
Q 035500 440 PRQFEYNPSNP--SLMAFGTLDGEVIVINHEN 469 (606)
Q Consensus 440 V~slafsP~dg--~~LaSGs~DGtVrIWDi~t 469 (606)
++++.|+|..+ ++||.+-.-|.|.|+|+++
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 78999998666 7999999999999999985
|
It contains a characteristic DLL sequence motif. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.32 E-value=2.3 Score=43.00 Aligned_cols=134 Identities=13% Similarity=0.071 Sum_probs=72.3
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee
Q 035500 453 MAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY 532 (606)
Q Consensus 453 LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~ 532 (606)
+..-+.||.|+=+++...+..-... ..|. +..--+.....++.|+.||.|.+|..+...... -. ...
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse-~~~~----e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~-------d~-~~s 99 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSE-RFID----EGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHS-------DR-VCS 99 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhh-hhhh----cceeecccCceEEeecccceEEEecCCccchHH-------Hh-hhc
Confidence 3344667777777765432211000 0111 111122344679999999999999887421100 00 011
Q ss_pred cCCCe-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC-CCeEEEEEeCCCCeEEEEE--eCCCe
Q 035500 533 DFEQL-TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHR-EPINVAKFSHHSPLCLLLL--HLTTM 601 (606)
Q Consensus 533 ~~~~V-~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~-~~I~sV~fsP~g~~LLaTg--S~Dgt 601 (606)
...+| +.|.--.++.+..+++.||.|+.|.+.-.+.+-... .|. ..+.....+..++. ++.+ |.|..
T Consensus 100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~-i~~a~~S~d~~ 170 (238)
T KOG2444|consen 100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEF-LKIADTSHDRV 170 (238)
T ss_pred ccccceeccccccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCce-EEeeccccchh
Confidence 12232 333333345688889999999999998877766665 466 44444444444442 3444 44443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=85.24 E-value=41 Score=37.38 Aligned_cols=157 Identities=8% Similarity=0.092 Sum_probs=86.0
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCceE--EEEeccCCCCCEEEEEEee---CCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 444 EYNPSNPSLMAFGTLDGEVIVINHENGNVA--CYIPSIGGTNSVLGLCWLK---KYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 444 afsP~dg~~LaSGs~DGtVrIWDi~tg~~v--~~~~~~gH~~~V~~L~fsp---~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
.-++++.+.|++||..|.+|||+...+... ..+--..-..+|.++..-+ ..+...++.=.-..+.+|.+......
T Consensus 31 ~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 31 DNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred cCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 334456789999999999999998653321 1111112346788887642 22223333344556777776432111
Q ss_pred cccccCCcceEEeecC--CCeEEEEEccCC-----CEEEEEeCCCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCC
Q 035500 519 VADARGNSSVATYYDF--EQLTSVHVNSTD-----DQFLASGYSKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSP 590 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~--~~V~sV~~sp~g-----~~LaSgs~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~ 590 (606)
...-..-.....+.|+ .....+++-|-| ..+..-|.||++.+|+-+.---.+.++. -..+ .+.|.|.-.
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPg---Pl~Y~~~tD 187 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPG---PLCYCPRTD 187 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCc---CeEEeecCC
Confidence 0000000112233343 224444443332 5788889999999999775443333331 1223 367777666
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
. |++++.+..+.|
T Consensus 188 s-fvt~sss~~l~~ 200 (418)
T PF14727_consen 188 S-FVTASSSWTLEC 200 (418)
T ss_pred E-EEEecCceeEEE
Confidence 4 777777777765
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.55 E-value=1.8 Score=50.91 Aligned_cols=73 Identities=8% Similarity=0.147 Sum_probs=61.4
Q ss_pred cceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 526 SSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 526 ~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.++++|+.+ ...++++|+-..++++.|+-.|.|++|+..+|....... +|.++|+-+.-+.+|..++.++++.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeecccc
Confidence 456667654 448999999999999999999999999999998887777 8999999999999998766665544
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.55 E-value=0.39 Score=51.91 Aligned_cols=98 Identities=24% Similarity=0.262 Sum_probs=69.1
Q ss_pred ccceEEEccCccccchHHHhhccCC-CceeEEEccccchhcc-ccccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVG-SSCHVLILRATNIRKL-NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l-~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.++...+|.++. ..-+..+.-.= ..=+.|++++|.|+.+ .-.+.+++|..|.+. .|.|+.++.. ..-.|+|+.|
T Consensus 116 ~~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~-~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS-FNDLSDLPKL-LSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcc--cccCccccccchhhcccccccccchhhhhhhhhccccccccccC-Cchhhhhhhh-hhhhhhhhhe
Confidence 467777776633 22222221111 1345699999999999 688899999999999 8999999752 1189999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhh
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
.+.+|++..+-..+ ..+..|.+|.
T Consensus 192 ~ls~N~i~~l~~~~---~~~~~L~~l~ 215 (394)
T COG4886 192 DLSGNKISDLPPEI---ELLSALEELD 215 (394)
T ss_pred eccCCccccCchhh---hhhhhhhhhh
Confidence 99999999993333 2333377776
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=84.41 E-value=0.58 Score=30.41 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.5
Q ss_pred cccccEEecccCCCcccccccccc
Q 035500 146 FMHLNTLSLDFCSSLASLHEDCFS 169 (606)
Q Consensus 146 ~~~l~tl~l~~~~~~~~~~~~~~~ 169 (606)
+.+|++|.|+ +|.|+.|+++.|.
T Consensus 1 L~~L~~L~L~-~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLS-NNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECC-CCcCCcCCHHHcc
Confidence 4678999999 8899999988886
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=84.41 E-value=0.58 Score=30.41 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.5
Q ss_pred cccccEEecccCCCcccccccccc
Q 035500 146 FMHLNTLSLDFCSSLASLHEDCFS 169 (606)
Q Consensus 146 ~~~l~tl~l~~~~~~~~~~~~~~~ 169 (606)
+.+|++|.|+ +|.|+.|+++.|.
T Consensus 1 L~~L~~L~L~-~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLS-NNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECC-CCcCCcCCHHHcc
Confidence 4678999999 8899999988886
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=84.34 E-value=45 Score=36.74 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=84.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC------CCCCEEEEEEee---CCC----CEEEEEECCCe
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG------GTNSVLGLCWLK---KYP----SKLVAGSDSGC 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g------H~~~V~~L~fsp---~~~----~~LaSgS~Dgt 506 (606)
|++++.| +-.++|.|..+|.+.|.|++....+..-.... ....|+++.|.- .++ -.++.|...|.
T Consensus 89 vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~ 166 (395)
T PF08596_consen 89 VTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN 166 (395)
T ss_dssp EEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred EeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence 7888886 55699999999999999998666655433323 345688898862 121 35888999999
Q ss_pred EEEEeCCCCCCCcccccCCcceEE-eecCCCeEEEE-EccC-----------------C---CEEEEEeCCCcEEEEECC
Q 035500 507 VRLFDLNHIPPKVADARGNSSVAT-YYDFEQLTSVH-VNST-----------------D---DQFLASGYSKNVALYDIN 564 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t-~~~~~~V~sV~-~sp~-----------------g---~~LaSgs~Dg~I~IWDlr 564 (606)
+.+|.+.-... ..+. -..... ..+.++|..|. ++.+ + +-++....+..++++..-
T Consensus 167 v~~fkIlp~~~--g~f~-v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~ 243 (395)
T PF08596_consen 167 VLTFKILPSSN--GRFS-VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP 243 (395)
T ss_dssp EEEEEEEE-GG--G-EE-EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred EEEEEEecCCC--CceE-EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence 99998752110 0000 001111 12334444333 2211 1 223333445789999998
Q ss_pred CCceeEEEcCCCCCCeEEEEEe----CCCCeEEEEEeCCCeEEE
Q 035500 565 TEKPLQLFTDMHREPINVAKFS----HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 565 t~k~v~~l~~gH~~~I~sV~fs----P~g~~LLaTgS~DgtIRc 604 (606)
+.+..+.... ..-....+.+- ..+...|++-..+|.|++
T Consensus 244 ~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 244 KSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp ---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred CCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 8776554432 22333344453 224456788888998886
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=83.76 E-value=28 Score=36.20 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=47.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEE-EEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGL-CWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L-~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
-+++++.|...|.+++.+.++|.....+...+ .|.+- ...+ ++..+..|+.|++...-|.++
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~---~vk~~a~~d~-~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE---TVKVRAQCDF-DGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehh---hhccceEEcC-CCceEEEecCCCcEEEecccc
Confidence 56789999999999999999998877665322 12211 2233 567999999999999999988
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=83.53 E-value=17 Score=39.44 Aligned_cols=110 Identities=12% Similarity=0.002 Sum_probs=70.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCC--------E-EEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNS--------V-LGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~--------V-~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
.++.+++++.+|.+.-+|.++|+.+......+.... + .++.. .+..++.++.+|.+.-+|..+++.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~-- 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEV-- 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCC--
Confidence 345788888899999999999999887654331110 0 01111 235677888999999999887532
Q ss_pred ccccCCcceEEeecCCCeEE-EEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 520 ADARGNSSVATYYDFEQLTS-VHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~s-V~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
.. .......+.+ ... .+..++.++.++.+.-+|.++|+.+...+
T Consensus 143 -------~W-~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 143 -------AW-QTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred -------cc-cccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 11 1111111111 111 14567777888999999999999877665
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.30 E-value=0.31 Score=56.36 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=78.8
Q ss_pred ccceEEEccCccccc-hHHHhhccCCCceeEEEccccchhcccccc-ccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRN-DNLLDLCQVGSSCHVLILRATNIRKLNMVG-RFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
+-||-+||+-|-|-+ +|||+|++- +.|||+.|++|++.-++ .=-+|..|+|. ||-++.+.- -+.+-+|.-|
T Consensus 187 ~ale~LnLshNk~~~v~~Lr~l~~L----khLDlsyN~L~~vp~l~~~gc~L~~L~lr-nN~l~tL~g--ie~LksL~~L 259 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVDNLRRLPKL----KHLDLSYNCLRHVPQLSMVGCKLQLLNLR-NNALTTLRG--IENLKSLYGL 259 (1096)
T ss_pred HHhhhhccchhhhhhhHHHHhcccc----cccccccchhccccccchhhhhheeeeec-ccHHHhhhh--HHhhhhhhcc
Confidence 346788999888765 799999864 57999999999988555 22359999999 999999975 7889999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhceec
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
.+..|-+.+- ..+..|.-|.+|++|-+|+=+
T Consensus 260 DlsyNll~~h-seL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 260 DLSYNLLSEH-SELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred chhHhhhhcc-hhhhHHHHHHHHHHHhhcCCc
Confidence 9999988876 333445555666666666544
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.63 E-value=17 Score=41.69 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=68.0
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC------------------
Q 035500 449 NPSLMAFGTLDG-----EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG------------------ 505 (606)
Q Consensus 449 dg~~LaSGs~DG-----tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg------------------ 505 (606)
++.+.+.||.+| +|..||..++.....-+. .+...-.+++.. ++...+.||.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m-p~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM-PIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCC-CcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence 667778888765 478899887655432121 111111122222 445667777653
Q ss_pred -----eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC------CcEEEEECCC-Cc--eeEE
Q 035500 506 -----CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS------KNVALYDINT-EK--PLQL 571 (606)
Q Consensus 506 -----tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D------g~I~IWDlrt-~k--~v~~ 571 (606)
++..||..+. .|....+...-... ...+.+ ++.+.+.||.+ ..+..||.++ .+ .+..
T Consensus 428 ~~~~~~ve~YDP~td-----~W~~v~~m~~~r~~--~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 428 THSSNKVIRYDTVNN-----IWETLPNFWTGTIR--PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred ccccceEEEECCCCC-----eEeecCCCCccccc--CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence 3555665542 11111111111111 111222 46677777754 2467899997 42 2334
Q ss_pred EcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 572 FTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 572 l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
++. .......+.+ +..++++||.|+
T Consensus 499 m~~-~r~~~~~~~~---~~~iyv~Gg~~~ 523 (557)
T PHA02713 499 TES-RLSALHTILH---DNTIMMLHCYES 523 (557)
T ss_pred cCc-ccccceeEEE---CCEEEEEeeecc
Confidence 442 2233333333 456899999887
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=82.40 E-value=27 Score=35.97 Aligned_cols=109 Identities=9% Similarity=0.145 Sum_probs=63.1
Q ss_pred eccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEe--ecCCCeEEEEEccCCCEEEEEeC
Q 035500 477 PSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATY--YDFEQLTSVHVNSTDDQFLASGY 554 (606)
Q Consensus 477 ~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~--~~~~~V~sV~~sp~g~~LaSgs~ 554 (606)
...+-...+.+|+|+|+++.+++.....+.|.-.+... .-++.+ .+....-+|++..++.++++.-.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-----------~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er 84 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-----------KVLRRIPLDGFGDYEGITYLGNGRYVLSEER 84 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-------------EEEEEE-SS-SSEEEEEE-STTEEEEEETT
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-----------CEEEEEeCCCCCCceeEEEECCCEEEEEEcC
Confidence 33355667999999996656666667777777666543 223333 34556888888765656665556
Q ss_pred CCcEEEEECCCCc------eeEEEc--C--CCCCCeEEEEEeCCCCeEEEEE
Q 035500 555 SKNVALYDINTEK------PLQLFT--D--MHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 555 Dg~I~IWDlrt~k------~v~~l~--~--gH~~~I~sV~fsP~g~~LLaTg 596 (606)
++.+.+.++.... .+..+. . .+...+-.++|+|.+..++++-
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 8999999884321 112222 1 1445688999999988777653
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.18 E-value=0.39 Score=46.69 Aligned_cols=66 Identities=23% Similarity=0.315 Sum_probs=50.3
Q ss_pred cccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEccccccc
Q 035500 111 TLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIV 185 (606)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~ 185 (606)
+.++-.+.+| |+|+|++|+|.+|. -+..+++|..||+. -|++.-++.+ |..+|-|+.|.++-|+..
T Consensus 49 ppnia~l~nl-------evln~~nnqie~lp~~issl~klr~lnvg-mnrl~~lprg-fgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 49 PPNIAELKNL-------EVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLNILPRG-FGSFPALEVLDLTYNNLN 115 (264)
T ss_pred CCcHHHhhhh-------hhhhcccchhhhcChhhhhchhhhheecc-hhhhhcCccc-cCCCchhhhhhccccccc
Confidence 4555555554 78888889888887 55678888888888 7777777766 888888888888877655
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=82.13 E-value=0.57 Score=52.89 Aligned_cols=67 Identities=22% Similarity=0.205 Sum_probs=56.1
Q ss_pred EEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCC
Q 035500 130 LILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLP 198 (606)
Q Consensus 130 ~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~ 198 (606)
|||++|++.-|-.---+--|..|++. ||.+++++++.. -.|.|+-|.-..|.|.+|-.-+..|.+|.
T Consensus 126 l~ls~NqlS~lp~~lC~lpLkvli~s-NNkl~~lp~~ig-~~~tl~~ld~s~nei~slpsql~~l~slr 192 (722)
T KOG0532|consen 126 LDLSSNQLSHLPDGLCDLPLKVLIVS-NNKLTSLPEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLR 192 (722)
T ss_pred hhhccchhhcCChhhhcCcceeEEEe-cCccccCCcccc-cchhHHHhhhhhhhhhhchHHhhhHHHHH
Confidence 89999999988765567889999999 999999999988 99999999999999998855444444433
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.05 E-value=0.36 Score=50.13 Aligned_cols=71 Identities=24% Similarity=0.359 Sum_probs=41.7
Q ss_pred cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhceecccCCCCC
Q 035500 142 MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGP 216 (606)
Q Consensus 142 ~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~ 216 (606)
..-+.+-|+.|-|. =|+|+++.. |.-+.+|..|.+-.|.|..| ..++=|..||+|+.|-+--=+||...|+
T Consensus 36 ic~kMp~lEVLsLS-vNkIssL~p--l~rCtrLkElYLRkN~I~sl-dEL~YLknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLS-VNKISSLAP--LQRCTRLKELYLRKNCIESL-DELEYLKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred HHHhcccceeEEee-ccccccchh--HHHHHHHHHHHHHhcccccH-HHHHHHhcCchhhhHhhccCCcccccch
Confidence 33445556666666 666666644 55566666666666666655 4444455566666665555566655554
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=81.85 E-value=35 Score=38.98 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=25.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 035500 545 TDDQFLASGYSKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 545 ~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~ 574 (606)
.+.+++.++.||.++.+|.++|+.+..++.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 356777888899999999999999988874
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.81 E-value=0.79 Score=53.92 Aligned_cols=102 Identities=19% Similarity=0.243 Sum_probs=53.5
Q ss_pred hccceEEEccCcc-ccchHHHhhccCCCceeEEEccccchhcc---ccccccccccEEecccCCCcccccccccccCccc
Q 035500 99 DQKLRVVDLSNIT-LRNDNLLDLCQVGSSCHVLILRATNIRKL---NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYL 174 (606)
Q Consensus 99 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l 174 (606)
.|+||..|+++.. |.++..+..++.=.+=+.|.+++-.+-+- .....|++|..|.+. .+.|+.+ .+=+.++||
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS-~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDIS-GTNISNL--SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecC-CCCccCc--HHHhccccH
Confidence 4555555555432 34444445555444444555554444333 234456666666666 6666665 445556666
Q ss_pred cEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 175 MCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 175 ~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
..|+|++=.+.+ |..+-+|..|..|+-|.
T Consensus 198 q~L~mrnLe~e~-~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 198 QVLSMRNLEFES-YQDLIDLFNLKKLRVLD 226 (699)
T ss_pred HHHhccCCCCCc-hhhHHHHhcccCCCeee
Confidence 666665555553 44445555555555554
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=81.63 E-value=7.6 Score=41.67 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=64.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEE--EEeccC--------CCCCEEEEEEeeCCCCEEEEE--E-----CCCe--EEE
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVAC--YIPSIG--------GTNSVLGLCWLKKYPSKLVAG--S-----DSGC--VRL 509 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~--~~~~~g--------H~~~V~~L~fsp~~~~~LaSg--S-----~Dgt--Ikl 509 (606)
.+..++.-+.+|.|+--|+....... .++... -.+.-.-+++++..+.+++.- + .|+. |-+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 45567778888888888876544322 221110 011122345554332222211 1 2333 334
Q ss_pred EeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCC-EEEEE-eCCCcEEEEECCCCceeEEEc
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDD-QFLAS-GYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~-~LaSg-s~Dg~I~IWDlrt~k~v~~l~ 573 (606)
+|..+ .+.+..+.-..++.+|+++.+.+ +|++. ..++.+.+||..+|+.++.++
T Consensus 274 ~D~~t----------~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 274 YDLKT----------HKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EETTT----------TEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EECCC----------CeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 44444 45666666666788999998874 66554 467999999999999998887
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=81.62 E-value=0.55 Score=48.17 Aligned_cols=77 Identities=27% Similarity=0.395 Sum_probs=52.7
Q ss_pred cceEEEccCccc----cchHHHhhccCCCceeEEEccccchhcccc---ccccccccEEecccCCCcccc---ccccccc
Q 035500 101 KLRVVDLSNITL----RNDNLLDLCQVGSSCHVLILRATNIRKLNM---VGRFMHLNTLSLDFCSSLASL---HEDCFSC 170 (606)
Q Consensus 101 ~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~l~tl~l~~~~~~~~~---~~~~~~~ 170 (606)
||+..+|+||.+ |=+.+-+-+ .+-.+|+|+.|.|+-+.. ..++.+|.+|.|- ++++|.+ .+.-|.-
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~---P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~-n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKA---PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF-NCSVTNLDDYREKVFLL 141 (260)
T ss_pred hhhhhcccCCcccccccceehhhhC---CceeEEeecCCccccccccchhhhhcchhhhhcc-cCCccccccHHHHHHHH
Confidence 888999988844 444444433 667789999998885554 4467777788777 5565554 4466777
Q ss_pred CccccEEEccc
Q 035500 171 MPYLMCLSMCE 181 (606)
Q Consensus 171 ~p~l~~l~~~~ 181 (606)
||.|+.|+=|.
T Consensus 142 l~~L~~LD~~d 152 (260)
T KOG2739|consen 142 LPSLKYLDGCD 152 (260)
T ss_pred hhhhccccccc
Confidence 77777777654
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=81.02 E-value=54 Score=35.09 Aligned_cols=150 Identities=9% Similarity=0.059 Sum_probs=83.4
Q ss_pred eeEEEEcCCCCCEEEEE--eCC---CcEEEEECCCCceEEEEecc--CCCCCEEEEEEe-eCCCCEEEEEECCCeEEEEe
Q 035500 440 PRQFEYNPSNPSLMAFG--TLD---GEVIVINHENGNVACYIPSI--GGTNSVLGLCWL-KKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 440 V~slafsP~dg~~LaSG--s~D---GtVrIWDi~tg~~v~~~~~~--gH~~~V~~L~fs-p~~~~~LaSgS~DgtIklWD 511 (606)
+..+.|.+ ++..++.. +.+ ..+.+.|..++......... +.-..-....|. +++...+.....||--+|+-
T Consensus 186 l~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 186 LTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL 264 (353)
T ss_dssp EEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred cccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence 67788999 66633332 222 34566788776654433211 212222355554 55556666666888777776
Q ss_pred CCCCCCCcccccCCcceEEee-cCCCeEE-EEEccCCC-EEEEEeCC----CcEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 512 LNHIPPKVADARGNSSVATYY-DFEQLTS-VHVNSTDD-QFLASGYS----KNVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~-~~~~V~s-V~~sp~g~-~LaSgs~D----g~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
+..... ....+. +.-.|.. +.|.++++ +.+++..+ ..+..-++..+..+..+.. ....-..+.
T Consensus 265 ~~~~~~---------~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~-~~~~~~~~~ 334 (353)
T PF00930_consen 265 YDLDGG---------KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC-EDGDHYSAS 334 (353)
T ss_dssp EETTSS---------EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST-TSSTTEEEE
T ss_pred Eccccc---------ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC-CCCCceEEE
Confidence 655321 122233 3344644 67788776 44455543 3555556662344455552 222226999
Q ss_pred EeCCCCeEEEEEeCCC
Q 035500 585 FSHHSPLCLLLLHLTT 600 (606)
Q Consensus 585 fsP~g~~LLaTgS~Dg 600 (606)
|+|++++++.+++.-+
T Consensus 335 ~Spdg~y~v~~~s~~~ 350 (353)
T PF00930_consen 335 FSPDGKYYVDTYSGPD 350 (353)
T ss_dssp E-TTSSEEEEEEESSS
T ss_pred ECCCCCEEEEEEcCCC
Confidence 9999999988888654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=80.76 E-value=43 Score=39.76 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=49.5
Q ss_pred CCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC-CCCCcccccCCc--ceEEee---------cCCCeEEEEEccCC---C
Q 035500 483 NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH-IPPKVADARGNS--SVATYY---------DFEQLTSVHVNSTD---D 547 (606)
Q Consensus 483 ~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~-~~~~~~~l~~~~--~i~t~~---------~~~~V~sV~~sp~g---~ 547 (606)
-.|..|..+| .+.+++-.|..| |.|-.+.. ......-..++. ..+++. ....|..+.|||.+ .
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3577888888 567777777655 44444432 110000000011 111221 12348999999984 6
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 035500 548 QFLASGYSKNVALYDINTE 566 (606)
Q Consensus 548 ~LaSgs~Dg~I~IWDlrt~ 566 (606)
.++.-..|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999854
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.13 E-value=60 Score=34.28 Aligned_cols=133 Identities=14% Similarity=0.202 Sum_probs=81.8
Q ss_pred EEEEcCCCCCEEEEEeCCCcE-EEEECCCCceEEEEe------ccCCCCCEEEEEEeeCCCCEEEEEE-----CCCeEEE
Q 035500 442 QFEYNPSNPSLMAFGTLDGEV-IVINHENGNVACYIP------SIGGTNSVLGLCWLKKYPSKLVAGS-----DSGCVRL 509 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtV-rIWDi~tg~~v~~~~------~~gH~~~V~~L~fsp~~~~~LaSgS-----~DgtIkl 509 (606)
.+++||..+.-++.+-.=|+. .+||....+...++. +.||. +|+| ++.+|++.- .-|.|-+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~-dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSP-DGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCC-CCcEEEeecCCCCCCCceEEE
Confidence 467899888888887777765 578988766544333 23443 5787 567776653 2368999
Q ss_pred EeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeC------C------------CcEEEEECCCCceeE
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGY------S------------KNVALYDINTEKPLQ 570 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~------D------------g~I~IWDlrt~k~v~ 570 (606)
||.+.. ...+-.+..++- -..+.|.++|.+++.+.. | -.+.+.|..+|+.+.
T Consensus 145 Yd~r~~---------fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 145 YDAREG---------FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred Eecccc---------cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 999863 233444544332 567889999988776643 1 123344555555432
Q ss_pred EEcC---CCCCCeEEEEEeCCCC
Q 035500 571 LFTD---MHREPINVAKFSHHSP 590 (606)
Q Consensus 571 ~l~~---gH~~~I~sV~fsP~g~ 590 (606)
.... .+...|..++..++|.
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgt 238 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGT 238 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCc
Confidence 2211 1445677777777776
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 606 | ||||
| 4e54_B | 435 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 2e-06 | ||
| 4e5z_B | 436 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 2e-06 | ||
| 3ei4_B | 436 | Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | 2e-06 |
| >pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435 | Back alignment and structure |
|
| >pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436 | Back alignment and structure |
|
| >pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 22/236 (9%)
Query: 363 YKRKHKESVVSLLQKREMGTSGNYQNSSKPKQPNIHRT--QHFFSRSLSAAKLGSSAWPL 420
+ H Q G K Q +I + +S+ A P
Sbjct: 2 HHHHHHVDENLYFQ-----GGGRTGGQKKVGQTSILHYIYKSSLGQSIHAQLRQCLQEPF 56
Query: 421 LHPVSSFSHIYK-EGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI 479
+ + S+ R R E++P++P+ +A G+ G++I+ +++ N +I +
Sbjct: 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM 115
Query: 480 GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN-HIPPKVADARGNSSVATYYDFEQLT 538
G +++ G+ + + ++L S G L D + + A D
Sbjct: 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDV---- 171
Query: 539 SVHVNSTDDQFLASG-YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593
S Q LA+G + + L ++ + + +H+ + A+F+ +
Sbjct: 172 -----SVSRQMLATGDSTGRLLLLGLDGHEIFKE--KLHKAKVTHAEFNPRCDWLM 220
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 25/166 (15%)
Query: 445 YNPSNPSLMAFGTLDGEVIVIN--------HENGNVACYIPSIGGTNSVLGLCWLKKYPS 496
Y P N ++A T +V+V + +G + G GL W
Sbjct: 136 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 195
Query: 497 KLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS-----TDDQFLA 551
L++ SD + L+D+N A + + + F T+V V +
Sbjct: 196 YLLSASDDHTICLWDIN------ATPKEHRVIDAKNIFTGHTAV-VEDVAWHLLHESLFG 248
Query: 552 SG-YSKNVALYDI---NTEKPLQLFTDMHREPINVAKFSHHSPLCL 593
S + + ++D NT KP H +N F+ +S L
Sbjct: 249 SVADDQKLMIWDTRNNNTSKPSHTVDA-HTAEVNCLSFNPYSEFIL 293
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 11/141 (7%)
Query: 459 DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518
GE G + I I V ++ + + + S V +FD P K
Sbjct: 106 KGEFGGFGSVCGKIEIEI-KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSK 164
Query: 519 VADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYS-KNVALYDINT-------EKPL 569
+ ++ + N + +L S + L+DIN
Sbjct: 165 PEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAK 224
Query: 570 QLFTDMHREPINVAKFSHHSP 590
+FT H + +
Sbjct: 225 NIFTG-HTAVVEDVAWHLLHE 244
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 25/165 (15%)
Query: 445 YNPSNPSLMAFGTLDGEVIVIN-HENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD 503
++ + SL D ++++ + N T V L + L GS
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 504 SGCVRLFDLNHIPPKVADARG-NSSVATYYDFEQLTSVHVNSTDDQFLASG-YSKNVALY 561
V L+DL ++ K+ + V + ++ LAS + + ++
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEI---------FQVQWSPHNETILASSGTDRRLHVW 349
Query: 562 DINTEKPLQLFTDM-------------HREPINVAKFSHHSPLCL 593
D++ Q D H I+ ++ + P +
Sbjct: 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 394
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 2e-08
Identities = 79/607 (13%), Positives = 162/607 (26%), Gaps = 211/607 (34%)
Query: 52 QLKNADIYP-LIDVFTE-MDSFDIEAVDILSKRPCFLKEEY--IMSLMHAIDQKLRVVDL 107
Q + DI D F + D D++ D+ + KEE I+ A+ LR+
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQ--DMP--KSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 108 SNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDC 167
L MV +F+ L +++
Sbjct: 71 ------------LLSKQE---------------EMVQKFVE-EVLRINY----------- 91
Query: 168 FSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQA 227
+LM + I + P +M +
Sbjct: 92 ----KFLM------SPI-------KTEQRQPSMMTRMYIEQR------------------ 116
Query: 228 SGADDRVKDNEDQIVCKKF--RDADEVELPKYLRTMNLMELSSCLSPN--LNGHAEMLDE 283
DR+ N++Q+ K R ++ LR L+EL + N ++G +
Sbjct: 117 ----DRLY-NDNQVFAKYNVSR----LQPYLKLRQA-LLELRP--AKNVLIDG---V--- 158
Query: 284 VNDSNEFPGGAHKQDLMDANVKLKKYISHHPSPI-------CFEKHYREYMIASL----- 331
G+ K + K I C M+ L
Sbjct: 159 --------LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 332 -PQLEVLDNLPIGRLDREIAKSVFARYFEHLPYKR--------KHKESVVS-------LL 375
D+ +L ++ R + PY+ ++ ++ + LL
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 376 QKREMGTSGNYQNSSKPKQPNIHRTQHFF----SRSLSAAKLGSSAWPL------LHP-- 423
R + ++ +++ ++ +SL L L +P
Sbjct: 271 TTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 424 VSSFSHIYKEGNKRVRP-RQFEYNPSNPSL-MAFGTLDG-------EVIVINHENGNVAC 474
+S + ++G + + + + L+ + + + + +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--- 386
Query: 475 YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK-VADARGNSSVATYYD 533
IP+ +L L W V + +N + + + + S +
Sbjct: 387 -IPT-----ILLSLIWFD---------VIKSDVMVV-VNKLHKYSLVEKQPKESTISIPS 430
Query: 534 --------FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM----HREPIN 581
E ++H + Y+ +D + P L D H
Sbjct: 431 IYLELKVKLENEYALH-----RSIVDH-YNIPKT-FDSDDLIPPYL--DQYFYSH----- 476
Query: 582 VAKFSHH 588
HH
Sbjct: 477 ---IGHH 480
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 4e-08
Identities = 54/404 (13%), Positives = 117/404 (28%), Gaps = 98/404 (24%)
Query: 36 IQNPNNEKCSILVYLDQLKNADIYPLIDVF-----TEMDSFDIEAVDILS----KRPCFL 86
+++ E C L+ L ++NA + F + + + D LS
Sbjct: 238 LKSKPYENC--LLVLLNVQNAKA---WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 87 KEEYIMSLMHAIDQKLRVVDLSNITLRND----NLLDLCQVGSSCHVLILRATNIRKLNM 142
++ L+ +D L + N L + S + N + +N
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN- 351
Query: 143 VGRFMHLNTLSLDFCSSLASLHEDCF---SCMPY-----LMCLSMCETRIVNLWTTTAAI 194
+ + SL+ + + F S P + LS+ +W
Sbjct: 352 CDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSL-------IW------ 396
Query: 195 SKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGA--------DDRVKDNEDQIVCKKF 246
+ ++ + K SL K + +VK + + +
Sbjct: 397 FDVIK-SDVMVVVNKLHK------YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 247 RDADEVELPKYLRTMNLMELSSCLSPNLNG--------HAEMLDEVNDSNEFPGGAHKQD 298
D +PK + + P L+ H + ++ F D
Sbjct: 450 VDHYN--IPKTF------DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR--MVFLD 499
Query: 299 L--MDANVKLKKYISHHPSPIC-----FEKHYREYMIASLPQLEVLDNLPIGRLDREIAK 351
++ ++ + I + Y+ Y+ + P+ E RL I
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPKYE--------RLVNAILD 550
Query: 352 SVFARYFEHLPYKRKHKESV-VSLLQKREMGTSGNYQNSSKPKQ 394
F E K+ + + ++L+ + ++ + K Q
Sbjct: 551 --FLPKIEENLICSKYTDLLRIALMAE----DEAIFEEAHKQVQ 588
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 1e-07
Identities = 24/159 (15%), Positives = 64/159 (40%), Gaps = 17/159 (10%)
Query: 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL 498
+P ++ + +L+A T+ GEV + + V + +++ + ++K L
Sbjct: 19 KPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQVEVVIKLE---DRSAIKEMRFVKG--IYL 72
Query: 499 VAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNV 558
V + V + L + T + ++TS+ +++ D L + ++
Sbjct: 73 VVINAKDTVYVLSL----------YSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSM 122
Query: 559 ALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597
+YDI+ ++ F + + + + SP+ + +
Sbjct: 123 IVYDIDRDQL-SSFKLDNLQKSSFFPAARLSPIVSIQWN 160
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 1e-06
Identities = 18/184 (9%), Positives = 50/184 (27%), Gaps = 13/184 (7%)
Query: 408 LSAAKLGSSAWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPS---LMAFGTLDGEVIV 464
++ KL + WP+L + N + P + E N S + DG +
Sbjct: 4 MARGKLKAPKWPILKNLELLQAQNYSRNIKTFPYK-ELNKSMYYDKWVCMCRCEDGALHF 62
Query: 465 INHENGNVACYIPSIGGTNSVLGLCWLKKYP-SKLVAGSDSGCVRLFDL-NHIPPKVADA 522
++ I + + + P ++L+ + + D + + +
Sbjct: 63 TQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV 122
Query: 523 RGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV 582
+ + H + F+ + + + + + +
Sbjct: 123 DSANEIIY-------MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSS 175
Query: 583 AKFS 586
Sbjct: 176 GVLH 179
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 23/171 (13%), Positives = 53/171 (30%), Gaps = 27/171 (15%)
Query: 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSK----LVAGSDSGC 506
L+A + DG + V N + + A + + + + + +V D
Sbjct: 183 LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKF-----ADNGYWMVVECDQ-T 236
Query: 507 VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG-----------YS 555
V FDL +A T +F+ T + + + + +
Sbjct: 237 VVCFDLRKDVGTLA-----YPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291
Query: 556 KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRCGI 606
K + + E L L +D + ++ + +L + + +
Sbjct: 292 KKTKNWTKDEESALCLQSD-TADFTDMDVVCGDGGIAAILKTNDSFNIVAL 341
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 316 PICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVFAR 356
P+ +KHYR Y+I +PQ+ VLD + +R+ A+ +F
Sbjct: 124 PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKG 164
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 6e-06
Identities = 16/161 (9%), Positives = 39/161 (24%), Gaps = 8/161 (4%)
Query: 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNS--VLGLCWLKKYP 495
V E + + + + + C + V L W +
Sbjct: 161 VSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCH 220
Query: 496 SK-----LVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFL 550
+ L S G + ++ V + + + +
Sbjct: 221 APHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV 280
Query: 551 ASGYS-KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590
G+ VA +D+ + + +H I ++
Sbjct: 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDF 321
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 17/175 (9%), Positives = 53/175 (30%), Gaps = 12/175 (6%)
Query: 390 SKPKQPNIHRTQHFFSRSLSAAKLGSSAWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSN 449
S + + K G A L S + + + Y+
Sbjct: 263 SLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE 322
Query: 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509
++++ +DG + N ++ S ++++ + + + S + + +R
Sbjct: 323 DTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRA 381
Query: 510 FDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-KNVALYDI 563
+++ T++ V S + +G + ++ + +
Sbjct: 382 VPSRAAFAVHPLVSRETTI---------TAIGV-SRLHPMVLAGSADGSLIITNA 426
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 3e-05
Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 11/196 (5%)
Query: 415 SSAWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC 474
+ + F++ + ++NP+ PS++A DG + V+
Sbjct: 127 TFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET--VK 184
Query: 475 YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN------HIPPKVADARGNSSV 528
++ T +V +CW K +L G +G V + P ++ V
Sbjct: 185 VCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRV 243
Query: 529 ATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM--HREPINVAKFS 586
V + D L + +AL EK ++F + +
Sbjct: 244 LDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH 303
Query: 587 HHSPLCLLLLHLTTMS 602
H+ + L +
Sbjct: 304 HYYLSYIEEWDLVLAA 319
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 316 PICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKS 352
+ YRE + LPQL LD + + +
Sbjct: 131 EVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSDA 167
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 310 ISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVFA 355
+ + YR ++ LP L+ LD +P+ +RE A
Sbjct: 152 LYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVARG 197
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 18/153 (11%), Positives = 44/153 (28%), Gaps = 13/153 (8%)
Query: 447 PSNPSLMAFGTLDGEVIV---INHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD 503
P + G+ G + + G V + +++V + + + S
Sbjct: 73 PGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF-DAFAVSSK 131
Query: 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQL-------TSVHVNSTDDQFLASG-YS 555
G + + +NH + N + + + + L +
Sbjct: 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191
Query: 556 KNVALYDINTEKPLQLFT-DMHREPINVAKFSH 587
V ++DI T + LQ+ ++
Sbjct: 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDE 224
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 7e-05
Identities = 18/132 (13%), Positives = 43/132 (32%), Gaps = 13/132 (9%)
Query: 449 NPSLMAFGTLDGEVIV--INHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC 506
+ SL+ + DG + V + + NV + S+ + +L ++ ++ G+ G
Sbjct: 22 SKSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80
Query: 507 VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG-YSKNVALYDINT 565
+ DL P A +++ + D L + + + + D
Sbjct: 81 ILKVDLIGSPSFQALTNNEANL---------GICRICKYGDDKLIAASWDGLIEVIDPRN 131
Query: 566 EKPLQLFTDMHR 577
+
Sbjct: 132 YGDGVIAVKNLN 143
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 31/170 (18%)
Query: 445 YNPSNPSLMAFGTLDGEVIVINHENG-------NVACYIPSIGGTNSVLGLCWLKKYPSK 497
+N +++A G +GE+ + + S+ + V+ L W +
Sbjct: 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHV 180
Query: 498 LVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLT--SVHVN----STDDQFL- 550
+ S ++DL + V + ++ +
Sbjct: 181 FASAGSSNFASIWDL----------KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230
Query: 551 --ASG--YSKNVALYDINT-EKPLQLFTDMHREPIN-VAKFSHHSPLCLL 594
A+G ++ ++D+ PLQ H++ I + + H LL
Sbjct: 231 ATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD-WCHQDEHLLL 279
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 20/152 (13%)
Query: 444 EYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYP--SKLVAG 501
++P+ +++ D ++V + G + +++ + W + +
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS---RDGALICTS 194
Query: 502 SDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHV-NSTDDQFLASGYSKN--- 557
VR+ + R + VH ++ + L +G+S+
Sbjct: 195 CRDKRVRVIEPRKGTVVAEKDRPHEGT---------RPVHAVFVSEGKILTTGFSRMSER 245
Query: 558 -VALYDINT-EKPLQLFTDMHREPINVAKFSH 587
VAL+D E+PL L + + F
Sbjct: 246 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDP 277
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 8e-04
Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 20/132 (15%)
Query: 459 DGEVIVINHENGNVACYIPSIGG-TNSVLGLCWLKKYP-SKLVAGSDSGCVRLFDLNHIP 516
D + V+ V ++ LGL + + + ++
Sbjct: 387 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS---ADGDIAVAACYKHIAIYSHGK-L 442
Query: 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-KNVALYDINTEKPLQLFTDM 575
+V + +S VA S D QF+A G V +Y ++ ++ T +
Sbjct: 443 TEVPISYNSSCVA----L---------SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 489
Query: 576 HREPINVAKFSH 587
H I FS+
Sbjct: 490 HPAEITSVAFSN 501
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 606 | |||
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.91 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.9 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.89 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.89 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.89 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.89 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.88 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.88 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.88 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.88 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.87 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.87 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.87 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.87 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.87 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.87 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.86 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.86 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.86 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.86 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.86 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.86 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.86 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.85 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.85 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.85 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.85 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.85 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.84 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.84 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.84 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.84 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.84 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.84 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.84 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.83 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.83 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.83 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.83 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.83 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.83 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.82 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.82 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.82 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.82 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.82 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.81 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.81 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.81 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.81 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.81 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.81 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.81 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.81 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.81 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.81 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.8 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.8 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.8 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.8 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.8 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.8 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.8 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.8 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.8 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.8 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.8 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.8 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.8 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.8 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.79 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.79 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.79 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.79 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.79 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.79 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.78 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.78 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.78 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.78 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.78 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.77 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.77 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.77 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.77 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.77 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.77 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.77 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.77 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.76 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.76 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.76 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.76 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.76 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.75 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.75 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.75 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.75 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.74 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.74 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.74 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.74 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.74 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.74 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.74 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.73 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.73 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.72 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.72 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.71 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.71 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.71 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.71 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.71 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.7 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.69 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.69 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.68 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.67 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.67 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.67 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.66 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.65 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.63 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.6 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.6 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.58 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.58 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.46 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.42 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.4 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.35 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.34 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.32 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.32 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.29 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.29 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.27 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.27 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.27 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.26 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.25 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.24 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.23 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.19 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.19 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.16 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.15 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.15 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.14 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.14 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.14 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.12 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.1 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.1 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.08 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.08 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.06 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.04 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.01 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.01 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.0 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.0 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.97 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.96 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.91 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.91 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.87 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.85 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.85 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.81 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.8 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.8 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.78 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.75 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.74 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.74 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.74 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.72 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 98.71 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.69 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.64 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.64 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 98.6 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.59 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.59 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.58 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 98.57 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.57 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.57 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.57 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.57 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.56 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 98.54 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 98.54 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.53 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.52 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 98.51 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.49 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 98.49 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 98.49 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 98.49 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 98.48 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.47 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.46 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.46 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 98.46 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 98.46 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 98.45 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.45 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.44 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 98.44 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.42 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.42 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 98.41 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.41 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.4 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.4 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.4 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.39 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 98.39 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.38 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.38 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 98.37 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 98.37 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.37 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 98.37 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.35 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.35 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.34 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 98.34 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.33 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 98.32 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.32 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.31 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.31 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 98.31 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.28 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.27 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.27 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.27 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 98.27 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 98.25 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 98.25 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.24 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 98.23 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.23 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 98.23 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.23 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 98.22 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 98.22 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.22 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 98.21 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.2 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.2 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.19 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.19 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 98.18 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.18 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 98.17 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.17 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.17 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.16 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 98.15 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.15 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.14 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.14 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 98.14 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 98.14 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.14 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.13 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 98.13 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 98.13 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.12 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.12 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 98.12 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.11 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.11 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 98.11 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.11 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 98.11 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.11 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 98.1 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.09 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.09 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 98.09 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 98.08 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.06 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.05 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 98.03 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.02 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.02 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.01 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 98.01 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 98.01 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 98.0 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 97.99 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.98 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 97.98 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 97.97 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 97.97 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 97.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 97.94 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 97.93 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 97.91 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 97.9 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 97.89 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 97.88 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.88 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 97.88 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 97.87 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 97.85 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 97.84 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.83 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 97.82 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 97.82 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.82 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 97.8 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.76 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.76 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.75 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 97.74 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 97.74 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.73 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 97.73 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 97.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.72 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 97.72 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 97.72 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 97.72 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 97.7 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 97.7 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 97.69 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 97.67 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 97.64 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 97.63 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 97.63 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 97.63 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.62 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.62 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.61 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 97.61 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 97.61 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.58 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.55 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.53 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.5 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 97.47 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 97.45 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 97.44 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 97.42 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.4 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.39 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.38 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 97.34 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.33 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.32 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.25 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.24 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.21 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 97.17 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.16 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.15 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.12 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.11 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 97.11 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.1 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.09 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.07 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.06 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.06 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.05 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.0 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 96.99 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 96.98 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 96.93 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.92 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 96.92 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 96.92 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.91 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.91 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.89 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 96.88 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 96.71 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 96.69 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.69 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.69 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 96.68 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.58 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.55 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.52 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 96.51 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 96.44 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.38 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 96.28 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.1 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.05 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.04 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.89 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 95.88 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.85 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 95.8 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 95.78 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 95.78 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 95.7 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 95.69 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.68 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 95.68 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 95.64 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 95.64 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.56 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.5 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 95.49 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 95.47 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.41 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 95.32 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 95.21 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.2 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.14 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 94.81 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 94.81 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 94.57 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 94.5 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 94.47 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 94.4 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 94.38 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 94.33 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 94.31 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 94.27 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.2 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 94.11 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 94.01 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.95 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 93.86 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 93.68 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 93.63 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 93.63 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 93.61 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 93.52 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 93.34 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 93.31 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 93.12 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 92.97 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 92.94 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 92.69 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 92.38 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 92.04 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 91.98 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 91.76 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 91.68 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 91.31 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 91.26 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 91.0 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 90.12 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 90.01 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 89.85 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 89.7 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 89.61 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 88.85 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 88.74 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 88.19 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 87.52 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 86.45 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 86.33 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 84.07 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 82.46 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 80.62 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 80.6 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 80.41 |
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-23 Score=217.04 Aligned_cols=151 Identities=15% Similarity=0.038 Sum_probs=133.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++++||+|+.||+|++||+++++.+..+. +|.+.|.+++|+|++..+++|||.|++|++||++.+
T Consensus 130 V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~--~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~---- 202 (344)
T 4gqb_B 130 VSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYR--AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP---- 202 (344)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS----
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc--CcCCceEEEEecCCCCCceeeecccccccccccccc----
Confidence 88999999 99999999999999999999999888665 999999999999977678999999999999999984
Q ss_pred ccccCCcceEEee---cCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYY---DFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~---~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.+...+. +...+.+++|+|++ .++++|+.||+|++||+++++++..+. +|...|++++|+|++..++++
T Consensus 203 ------~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 203 ------KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp ------SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEE
T ss_pred ------ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEE
Confidence 3444443 23458999999965 689999999999999999999999999 899999999999999778999
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
||.|++||+
T Consensus 276 gs~D~~i~v 284 (344)
T 4gqb_B 276 LSEDCSLAV 284 (344)
T ss_dssp EETTSCEEE
T ss_pred EeCCCeEEE
Confidence 999999986
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=206.83 Aligned_cols=150 Identities=17% Similarity=0.210 Sum_probs=134.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++.++++|+.||+|++||++++..+..+. +|..+|.+++|+| ++.+|++|+.|++|++||+.+
T Consensus 16 V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~----- 86 (304)
T 2ynn_A 16 VKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNT----- 86 (304)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTT-----
T ss_pred eEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEee--ccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECCC-----
Confidence 88999999 99999999999999999999998887665 8999999999999 678999999999999999988
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...+..+.+ ...|.+++|+|+++++++|+.|++|++||++++.. ...+. +|...|++++|+|.+..++++|+
T Consensus 87 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 87 -----GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp -----CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-CCCSCEEEEEECTTCTTEEEEEE
T ss_pred -----CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-ccCCcEEEEEECCCCCCEEEEEe
Confidence 345667775 46699999999999999999999999999998744 55666 89999999999997666799999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|+.
T Consensus 161 ~D~~v~i 167 (304)
T 2ynn_A 161 LDRTVKV 167 (304)
T ss_dssp TTSEEEE
T ss_pred CCCeEEE
Confidence 9999985
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=210.07 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=132.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+|.+..++++|+.||+|++||+++++....+....|...+.+++|+|.++.++++|+.||+|++||+++
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~----- 246 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS----- 246 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-----
Confidence 889999995557899999999999999999998887766677778999999998888999999999999999998
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..++.++.+ ...|++++|+|++ .++++||.|++|++||+++++.+. +. +|.+.|++++|+|+++++++|||
T Consensus 247 -----~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-~H~~~V~~v~~sp~~~~llas~s 319 (344)
T 4gqb_B 247 -----TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-AHRDFVRDATWSPLNHSLLTTVG 319 (344)
T ss_dssp -------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-CCSSCEEEEEECSSSTTEEEEEE
T ss_pred -----CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-CCCCCEEEEEEeCCCCeEEEEEc
Confidence 456777775 4669999999998 589999999999999999987654 55 79999999999999999999999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|+.
T Consensus 320 ~D~~v~~ 326 (344)
T 4gqb_B 320 WDHQVVH 326 (344)
T ss_dssp TTSCEEE
T ss_pred CCCeEEE
Confidence 9999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-22 Score=206.31 Aligned_cols=149 Identities=19% Similarity=0.338 Sum_probs=136.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| +++++|+|+.||.|++||+++++.+..+. +|...|.+++|+| ++.+|++|+.||+|++||++..
T Consensus 167 v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~---- 238 (321)
T 3ow8_A 167 ILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLE--GHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHA---- 238 (321)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTC----
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEc--ccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCc----
Confidence 78999999 99999999999999999999999887665 8999999999999 6789999999999999999873
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
....++.+| ..|.+++|+|++.++++|+.|++|++||+++++++..+. +|...|++++|+|++.. +++++.
T Consensus 239 ------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~~-l~s~~~ 310 (321)
T 3ow8_A 239 ------NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSK-IVSVGD 310 (321)
T ss_dssp ------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSE-EEEEET
T ss_pred ------ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-CCCCcEEEEEECCCCCE-EEEEeC
Confidence 456666654 569999999999999999999999999999999999998 79999999999999985 789999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++|+.
T Consensus 311 d~~i~v 316 (321)
T 3ow8_A 311 DQEIHI 316 (321)
T ss_dssp TCCEEE
T ss_pred CCeEEE
Confidence 999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-22 Score=205.70 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=135.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| ++.++++|+.||+|++||++++.....+. +|...|.+++|+| ++.+|++|+.||+|++||++.
T Consensus 187 v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~--~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~----- 257 (340)
T 1got_B 187 VMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFT--GHESDINAICFFP-NGNAFATGSDDATCRLFDLRA----- 257 (340)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----
T ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEc--CCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCC-----
Confidence 88999999 89999999999999999999998887665 8999999999999 678999999999999999987
Q ss_pred ccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...+..+.+. ..|.+++|+|++.++++|+.|+.|++||+++++.+..+. +|...|++++|+|++.+ ++||
T Consensus 258 -----~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~~-l~s~ 330 (340)
T 1got_B 258 -----DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMA-VATG 330 (340)
T ss_dssp -----TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSC-EEEE
T ss_pred -----CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCCE-EEEE
Confidence 3445556543 369999999999999999999999999999999999998 89999999999999985 8999
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
|.|++|+.
T Consensus 331 s~D~~i~i 338 (340)
T 1got_B 331 SWDSFLKI 338 (340)
T ss_dssp ETTSCEEE
T ss_pred cCCccEEe
Confidence 99999985
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=217.15 Aligned_cols=153 Identities=20% Similarity=0.316 Sum_probs=133.3
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+|++++|||.++++||+|+.||+|+|||+.++.....+...+|.+.|++++|+|.++.+|+|||.||+|++||++..
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~--- 197 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN--- 197 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC---
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC---
Confidence 48999999988899999999999999999988776666777999999999999977889999999999999999862
Q ss_pred cccccCCcceEEee-c---CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYY-D---FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~---~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
....+. + ...+.+++|+|++.++++|+.||.|++||++. +.+..+. +|...|++++|+|++..+++
T Consensus 198 --------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~-~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 198 --------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR-MHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp --------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB-CCSSCEEEEEECTTCSSEEE
T ss_pred --------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe-cccceEEeeeecCCCceEEE
Confidence 222232 2 23478999999999999999999999999974 5566777 79999999999999998999
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+|+.|++|++
T Consensus 268 s~s~d~~v~i 277 (435)
T 4e54_B 268 TASVDQTVKI 277 (435)
T ss_dssp EEETTSBCCE
T ss_pred EecCcceeeE
Confidence 9999999875
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-22 Score=210.55 Aligned_cols=149 Identities=18% Similarity=0.259 Sum_probs=136.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++.++++|+.||+|+|||+.+++....+. +|.+.|.+++|+| ++.+|+|||.||+|++||+..
T Consensus 111 V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~----- 181 (410)
T 1vyh_C 111 VTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLK--GHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQG----- 181 (410)
T ss_dssp EEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEEC--CCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTS-----
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEe--ccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-----
Confidence 88999999 89999999999999999999998887665 9999999999998 678999999999999999987
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++.++.+ ...|.+++|+|+++++++|+.|++|++||+++++.+..+. +|...|.+++|+|++. ++++|+.
T Consensus 182 -----~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~g~-~l~s~s~ 254 (410)
T 1vyh_C 182 -----FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGT-LIASCSN 254 (410)
T ss_dssp -----SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSS-EEEEEET
T ss_pred -----CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEEECCCCC-EEEEEcC
Confidence 345666665 4569999999999999999999999999999999999999 7999999999999998 5899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++|++
T Consensus 255 D~~v~v 260 (410)
T 1vyh_C 255 DQTVRV 260 (410)
T ss_dssp TSCEEE
T ss_pred CCeEEE
Confidence 999985
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=198.04 Aligned_cols=150 Identities=16% Similarity=0.175 Sum_probs=130.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE-EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA-CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v-~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|++++|+| ++.++++|+.||+|++||++++... ..+ .+|...|.+++|+|.++..|+||+.|++|++||++..
T Consensus 100 v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~--- 173 (304)
T 2ynn_A 100 IRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTF--EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS--- 173 (304)
T ss_dssp EEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEE--CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS---
T ss_pred EEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhh--cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC---
Confidence 88999999 8899999999999999999877443 333 4999999999999977789999999999999999873
Q ss_pred cccccCCcceEEee-c-CCCeEEEEEcc--CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYY-D-FEQLTSVHVNS--TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~-~~~V~sV~~sp--~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
.+...+. + ...+..++|+| ++.++++|+.|++|++||+++++.+..+. +|...|++++|+|+++ +++
T Consensus 174 -------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~h~~~v~~~~~~p~~~-~l~ 244 (304)
T 2ynn_A 174 -------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP-III 244 (304)
T ss_dssp -------SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSS-EEE
T ss_pred -------CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC-CCCCCEEEEEECCCCC-EEE
Confidence 2333333 3 36699999987 56799999999999999999999999999 8999999999999998 589
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+|+.|++||.
T Consensus 245 s~s~Dg~i~i 254 (304)
T 2ynn_A 245 SGSEDGTLKI 254 (304)
T ss_dssp EEETTSCEEE
T ss_pred EEcCCCeEEE
Confidence 9999999985
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-21 Score=193.23 Aligned_cols=149 Identities=16% Similarity=0.343 Sum_probs=135.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++|+|+.||.|++||..+++....+. +|...|.+++|+| ++.+|++|+.||+|++||++.
T Consensus 26 v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~----- 96 (312)
T 4ery_A 26 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSS----- 96 (312)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-----
T ss_pred EEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhc--cCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCC-----
Confidence 88999999 99999999999999999999988877655 8999999999999 678999999999999999988
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++..+.. ...|.+++|+|+++++++|+.|++|++||+++++.+..+. +|...|.+++|+|++. ++++|+.
T Consensus 97 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~ 169 (312)
T 4ery_A 97 -----GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGS-LIVSSSY 169 (312)
T ss_dssp -----CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEET
T ss_pred -----CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcCCCC-EEEEEeC
Confidence 345667765 4669999999999999999999999999999999999998 7999999999999988 5889999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|+.
T Consensus 170 d~~i~~ 175 (312)
T 4ery_A 170 DGLCRI 175 (312)
T ss_dssp TSCEEE
T ss_pred CCcEEE
Confidence 999875
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-21 Score=200.49 Aligned_cols=154 Identities=14% Similarity=0.227 Sum_probs=131.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++++||+|+.||+|++||..++.......+.+|.+.|.+++|+| ++.+|++|+.|++|++||++....
T Consensus 64 v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~-- 139 (345)
T 3fm0_A 64 VRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDE-- 139 (345)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSC--
T ss_pred EEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCC--
Confidence 88999999 99999999999999999998775433334559999999999999 678999999999999999987421
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP--LQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~--v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
..++..+.. ...|.+++|+|++.++++|+.|++|++||.++++. ...+. +|...|++++|+|++.+ +++|
T Consensus 140 -----~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~-l~s~ 212 (345)
T 3fm0_A 140 -----YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQR-LASC 212 (345)
T ss_dssp -----EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSE-EEEE
T ss_pred -----eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCE-EEEE
Confidence 234455554 46699999999999999999999999999998753 46777 79999999999999984 8999
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|++||+
T Consensus 213 s~D~~v~i 220 (345)
T 3fm0_A 213 SDDRTVRI 220 (345)
T ss_dssp ETTSCEEE
T ss_pred eCCCeEEE
Confidence 99999985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=203.82 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=134.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||+|++||+++++.+..+. +|.+.|.+++|+|.+...+++++.||+|++||++.+.
T Consensus 142 V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~--- 215 (357)
T 4g56_B 142 VKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYN--AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK--- 215 (357)
T ss_dssp EEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS---
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc--CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc---
Confidence 88999999 99999999999999999999999887665 8999999999999766789999999999999998843
Q ss_pred ccccCCcceEEe---ecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATY---YDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~---~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
+...+ .+...+.+++|+|++ .++++|+.|+.|++||+++++.+..+. +|...|++++|+|++..++|+
T Consensus 216 -------~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 216 -------PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-VHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp -------CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-CCSSCEEEEEECSSSSCCEEE
T ss_pred -------eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-ccceeEEEEEEcCCCCCEEEE
Confidence 22222 234569999999985 689999999999999999999999999 799999999999999778999
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
||.|++||+
T Consensus 288 gs~D~~i~i 296 (357)
T 4g56_B 288 ISEDCTVAV 296 (357)
T ss_dssp EETTSCEEE
T ss_pred EeCCCEEEE
Confidence 999999985
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.7e-21 Score=198.74 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=133.5
Q ss_pred eeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPS-NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+|. +++++++|+.||+|++||+++++.+..+. +|...|.+++|+| ++..|++|+.|++|++||++..
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~--~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~--- 272 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE--THESDVNSVRYYP-SGDAFASGSDDATCRLYDLRAD--- 272 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT---
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCC---
Confidence 778899884 46899999999999999999999887665 8999999999999 6789999999999999999873
Q ss_pred cccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
..+..+..+ ..+.+++|+|++.++++|+.|++|++||+++++.+..+. +|.+.|++++|+|++.+ +++
T Consensus 273 -------~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~-l~s 343 (354)
T 2pbi_B 273 -------REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTA-FCS 343 (354)
T ss_dssp -------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSC-EEE
T ss_pred -------cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-CCCCcEEEEEECCCCCE-EEE
Confidence 344455432 358999999999999999999999999999999999998 89999999999999985 899
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
||.|++||+
T Consensus 344 gs~D~~v~v 352 (354)
T 2pbi_B 344 GSWDHTLRV 352 (354)
T ss_dssp EETTSEEEE
T ss_pred EcCCCCEEe
Confidence 999999985
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-21 Score=196.30 Aligned_cols=154 Identities=16% Similarity=0.265 Sum_probs=124.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-------ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-------NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-------~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
|++++|+| +++++|+|+.||+|+|||.+.. +.... +.+|.+.|.+++|+| ++.+|+|||.|++|++||+
T Consensus 61 v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~--~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 61 IRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI--IEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEE--EC----CEEEEEECT-TSCEEEEEETTSCEEEEEC
T ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEE--EcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEec
Confidence 88999999 8999999999999999998532 23333 459999999999999 6789999999999999999
Q ss_pred CCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCeEEEEEeCCC
Q 035500 513 NHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE--KPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
+..... ..++..+.+ ...|.+++|+|++.++++|+.|++|++||.+++ +++..+. +|...|++++|+|++
T Consensus 137 ~~~~~~------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 209 (330)
T 2hes_X 137 DESGEE------YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTE 209 (330)
T ss_dssp CTTCCC------CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSS
T ss_pred cCCCCC------eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCC
Confidence 642110 234566665 466999999999999999999999999999877 5678888 899999999999984
Q ss_pred -CeEEEEEeCCCeEEE
Q 035500 590 -PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 -~~LLaTgS~DgtIRc 604 (606)
...+++|+.|++||+
T Consensus 210 ~~~~l~s~s~D~~v~i 225 (330)
T 2hes_X 210 GVFRLCSGSDDSTVRV 225 (330)
T ss_dssp SSCEEEEEETTSCEEE
T ss_pred CeeEEEEEeCCCeEEE
Confidence 236899999999985
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=199.11 Aligned_cols=153 Identities=15% Similarity=0.193 Sum_probs=130.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEE-EeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACY-IPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~-~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++|+| ++++||+|+.||+|+|||.+++..... ....+|.+.|.+++|+| ++.+|++|+.|++|++||+....
T Consensus 19 v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~-- 94 (345)
T 3fm0_A 19 CWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDD-- 94 (345)
T ss_dssp EEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC---
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCC--
Confidence 78999999 999999999999999999988764432 22358999999999999 67899999999999999988732
Q ss_pred cccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc---eeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK---PLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k---~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
..++.++.+ ..+|.+++|+|++++|++|+.|++|++||++++. .+..+. +|...|++++|+|++. +++
T Consensus 95 ------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~-~l~ 166 (345)
T 3fm0_A 95 ------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVVWHPSQE-LLA 166 (345)
T ss_dssp ------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEEECSSSS-CEE
T ss_pred ------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEEECCCCC-EEE
Confidence 234566765 4669999999999999999999999999998764 355666 7999999999999998 489
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+|+.|++|+.
T Consensus 167 s~s~d~~i~~ 176 (345)
T 3fm0_A 167 SASYDDTVKL 176 (345)
T ss_dssp EEETTSCEEE
T ss_pred EEeCCCcEEE
Confidence 9999999975
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=199.88 Aligned_cols=150 Identities=19% Similarity=0.292 Sum_probs=135.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++|+|+.||+|+|||+++++....+. +|...|.+++|+| ++.+|++|+.|++|++||+++
T Consensus 126 v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~----- 196 (393)
T 1erj_A 126 IRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ--GHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRT----- 196 (393)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-----
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEc--cCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCC-----
Confidence 78999999 99999999999999999999998877655 9999999999999 668999999999999999988
Q ss_pred ccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEEc------CCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLFT------DMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~------~gH~~~I~sV~fsP~g~~L 592 (606)
..+...+.++..+.+++|+| ++.++++|+.|++|++||+++++.+..+. .+|...|++++|+|++.+
T Consensus 197 -----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~- 270 (393)
T 1erj_A 197 -----GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS- 270 (393)
T ss_dssp -----TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-
T ss_pred -----CeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE-
Confidence 34566777888899999999 78999999999999999999998877662 269999999999999985
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|++|+.
T Consensus 271 l~s~s~d~~v~~ 282 (393)
T 1erj_A 271 VVSGSLDRSVKL 282 (393)
T ss_dssp EEEEETTSEEEE
T ss_pred EEEEeCCCEEEE
Confidence 789999999985
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=193.79 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=132.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| +++++++|+.||+|++||+++++....+. +|.+.|.+++|+| ++.+++||+.|++|++||++.
T Consensus 68 v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~----- 138 (319)
T 3frx_A 68 VQDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFV--GHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKG----- 138 (319)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTS-----
T ss_pred EEEEEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEc--cCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-----
Confidence 88999999 99999999999999999999999887665 9999999999998 678999999999999999975
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccC------CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNST------DDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~------g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.++.++. |...|.+++|+|. +..+++++.|++|++||+++.+....+. +|...|++++|+|++. +
T Consensus 139 ------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~-~ 210 (319)
T 3frx_A 139 ------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGT-L 210 (319)
T ss_dssp ------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSS-E
T ss_pred ------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCC-E
Confidence 2455555 4566999999985 3489999999999999999999988888 7999999999999998 5
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|++|++
T Consensus 211 l~s~~~dg~i~i 222 (319)
T 3frx_A 211 IASAGKDGEIML 222 (319)
T ss_dssp EEEEETTCEEEE
T ss_pred EEEEeCCCeEEE
Confidence 899999999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=195.16 Aligned_cols=149 Identities=13% Similarity=0.230 Sum_probs=135.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| +++++++|+.||.|++||+++++....+. .|...|.+++|+| ++.+|++|+.||+|++||+++
T Consensus 125 ~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~--~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~----- 195 (321)
T 3ow8_A 125 AWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLD--TRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT----- 195 (321)
T ss_dssp CCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEE--CSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----
T ss_pred EEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEec--CCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCC-----
Confidence 67889999 99999999999999999999988876655 7888999999999 678999999999999999987
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+.++.+ ..+|.+++|+|+++++++|+.|++|++||+++++.+..+. +|...|++++|+|++.+ +++|+.
T Consensus 196 -----~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~-l~s~s~ 268 (321)
T 3ow8_A 196 -----GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTH-FVSSSS 268 (321)
T ss_dssp -----TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSE-EEEEET
T ss_pred -----CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCE-EEEEeC
Confidence 456677775 4669999999999999999999999999999999999998 79999999999999985 889999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++|++
T Consensus 269 D~~v~i 274 (321)
T 3ow8_A 269 DKSVKV 274 (321)
T ss_dssp TSCEEE
T ss_pred CCcEEE
Confidence 999985
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=200.96 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=135.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-------------------CCEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-------------------PSKLVA 500 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-------------------~~~LaS 500 (606)
|++++|+| ++.++++|+.||+|++||+.+++....+. +|...|.+++|+|.. +.++++
T Consensus 237 v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 237 VRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEec--CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 78899999 99999999999999999999988877654 899999999999842 568999
Q ss_pred EECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 035500 501 GSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP 579 (606)
Q Consensus 501 gS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~ 579 (606)
|+.|++|++||++. ..++.++.+| ..|.+++|+|++.++++|+.|++|++||+++++.+..+. +|...
T Consensus 314 gs~D~~i~iwd~~~----------~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-~h~~~ 382 (410)
T 1vyh_C 314 GSRDKTIKMWDVST----------GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHF 382 (410)
T ss_dssp EETTSEEEEEETTT----------TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSC
T ss_pred EeCCCeEEEEECCC----------CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCc
Confidence 99999999999998 4567777754 569999999999999999999999999999999999998 89999
Q ss_pred eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++++|+|++++ ++|||.|++||.
T Consensus 383 v~~l~~~~~~~~-l~sgs~D~~i~v 406 (410)
T 1vyh_C 383 VTSLDFHKTAPY-VVTGSVDQTVKV 406 (410)
T ss_dssp EEEEEECSSSSC-EEEEETTSEEEE
T ss_pred EEEEEEcCCCCE-EEEEeCCCcEEE
Confidence 999999999985 889999999985
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=194.83 Aligned_cols=151 Identities=14% Similarity=0.249 Sum_probs=129.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe------------------------------------------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP------------------------------------------ 477 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~------------------------------------------ 477 (606)
|.+++|+| ++.+||+|+.||+|+|||..+++....+.
T Consensus 67 V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~ 145 (354)
T 2pbi_B 67 VLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA 145 (354)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGG
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccc
Confidence 88999999 88999999999999999987765433221
Q ss_pred ----ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccC--CCEEE
Q 035500 478 ----SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNST--DDQFL 550 (606)
Q Consensus 478 ----~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~--g~~La 550 (606)
..+|.+.|.+++|+| ++..+++|+.|++|++||+++ ..++.++.+| ..|.+++|+|. +++++
T Consensus 146 ~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVES----------GQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp GCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT----------CCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred cceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCC----------CeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 125788899999998 567899999999999999987 3467777754 56999999885 68999
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 551 ASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 551 Sgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+|+.||+|++||+++++.+..+. +|...|++++|+|++. .+++|+.|++||.
T Consensus 215 sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~l~s~s~D~~v~l 266 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGD-AFASGSDDATCRL 266 (354)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCC-EEEEEeCCCeEEE
Confidence 99999999999999999999998 7999999999999998 5899999999985
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=190.53 Aligned_cols=156 Identities=14% Similarity=0.163 Sum_probs=128.6
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.+++|+| .++++||+|+.||+|+|||+++++........+|...|.+++|+|+. +.+|++|+.|++|++||++....
T Consensus 56 V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 56 VWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp EEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred eEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 88999986 34899999999999999999887533333345899999999999952 67999999999999999987421
Q ss_pred CcccccCCcceEEee-cCCCeEEEEEccC-------------CCEEEEEeCCCcEEEEECCCCc----eeEEEcCCCCCC
Q 035500 518 KVADARGNSSVATYY-DFEQLTSVHVNST-------------DDQFLASGYSKNVALYDINTEK----PLQLFTDMHREP 579 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~-~~~~V~sV~~sp~-------------g~~LaSgs~Dg~I~IWDlrt~k----~v~~l~~gH~~~ 579 (606)
.....+. |...|.+++|+|+ +.+|++|+.|++|++||+++++ ....+. +|...
T Consensus 136 --------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~ 206 (297)
T 2pm7_B 136 --------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDW 206 (297)
T ss_dssp --------BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSC
T ss_pred --------eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCc
Confidence 1123444 4566999999997 4699999999999999999876 556777 79999
Q ss_pred eEEEEEeCCC--CeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHS--PLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g--~~LLaTgS~DgtIRc 604 (606)
|++++|+|++ ..++++||.|++|+.
T Consensus 207 V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 207 VRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred eEEEEECCCCCCceEEEEEECCCcEEE
Confidence 9999999986 457999999999985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-21 Score=200.07 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=134.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+|....++++++.||+|++||+++++....+....|...+.+++|+|.++.+|++|+.|+.|++||++.
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~----- 258 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN----- 258 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-----
T ss_pred EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC-----
Confidence 889999995556899999999999999999988877776678889999999997788999999999999999988
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..++.++.. ...|++++|+|++ .++++|+.|++|++||+++++.+..+ +|.+.|++++|+|.+..+|+|||
T Consensus 259 -----~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 259 -----PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp -----GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEE
T ss_pred -----CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEc
Confidence 456677775 4669999999997 58999999999999999999887665 59999999999995444799999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|+.
T Consensus 332 ~Dg~v~i 338 (357)
T 4g56_B 332 WDHKVLH 338 (357)
T ss_dssp TTSCEEE
T ss_pred CCCeEEE
Confidence 9999985
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-20 Score=189.74 Aligned_cols=153 Identities=13% Similarity=0.126 Sum_probs=127.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG--NVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg--~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+| ++++||+|+.||+|+|||++.+ +....+ .+|.+.|++++|+|. ++.+|+|||.|++|++||++.+.
T Consensus 12 V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l--~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 12 IHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTL--TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEE--CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred eEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEE--ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence 88999999 9999999999999999999753 444444 499999999999763 46899999999999999998742
Q ss_pred CCcccccCCcceEEee-cCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCce--eEEEcCCCCCCeEEEEEeCCC--
Q 035500 517 PKVADARGNSSVATYY-DFEQLTSVHVNST--DDQFLASGYSKNVALYDINTEKP--LQLFTDMHREPINVAKFSHHS-- 589 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k~--v~~l~~gH~~~I~sV~fsP~g-- 589 (606)
...+..+. |...|.+++|+|+ +.++++|+.|++|++||++++.. ...+. +|...|++++|+|++
T Consensus 89 --------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 89 --------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIE 159 (297)
T ss_dssp --------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC--
T ss_pred --------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeecCCccc
Confidence 12345555 4566999999998 78999999999999999997642 45566 799999999999973
Q ss_pred ----------CeEEEEEeCCCeEEE
Q 035500 590 ----------PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ----------~~LLaTgS~DgtIRc 604 (606)
..++++|+.|++||.
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~l 184 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKI 184 (297)
T ss_dssp ----------CCEEEEEETTSCEEE
T ss_pred ccccCCCCCCcceEEEEcCCCcEEE
Confidence 247999999999985
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=198.68 Aligned_cols=151 Identities=16% Similarity=0.167 Sum_probs=130.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+|.+++++++|+.||+|++||++. +..+..+. +|.+.|.+++|+| ++.+|+|||.||+|++||++++
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~--~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~--- 281 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH--GHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTG--- 281 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC--CCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTT---
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC--CcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCC---
Confidence 788999987899999999999999999974 45555544 9999999999999 6789999999999999999983
Q ss_pred cccccCCcceEEeecC--------CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc---CCCCCCeEEEEEeC
Q 035500 519 VADARGNSSVATYYDF--------EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT---DMHREPINVAKFSH 587 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~--------~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~---~gH~~~I~sV~fsP 587 (606)
.++..+..+ ..|.+++|+|+|.++++|+.||.|++||+.+++.+..+. .+|.+.|++++|+|
T Consensus 282 -------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 354 (380)
T 3iz6_a 282 -------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS 354 (380)
T ss_dssp -------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS
T ss_pred -------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC
Confidence 344444421 238999999999999999999999999999998877762 37999999999999
Q ss_pred CCCeEEEEEeCCCeEEE
Q 035500 588 HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIRc 604 (606)
++.+ ++|||.|++|+.
T Consensus 355 dg~~-l~sgs~D~~i~i 370 (380)
T 3iz6_a 355 DGSA-LCTGSWDKNLKI 370 (380)
T ss_dssp SSSE-EEEECTTSCEEE
T ss_pred CCCE-EEEeeCCCCEEE
Confidence 9985 899999999985
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-20 Score=185.09 Aligned_cols=150 Identities=18% Similarity=0.299 Sum_probs=134.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| +++++++|+.||.|++||+++++.+..+. +|...|.+++|+| ++.++++|+.||+|++||++.
T Consensus 68 v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~----- 138 (312)
T 4ery_A 68 ISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKT----- 138 (312)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTT-----
T ss_pred eEEEEEcC-CCCEEEEECCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-----
Confidence 78999999 89999999999999999999999887665 8999999999999 678999999999999999987
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++..+.. ..+|.+++|+|+++++++|+.|+.|++||+++++.+..+...|...+..++|+|++.+ +++++.
T Consensus 139 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 212 (312)
T 4ery_A 139 -----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATL 212 (312)
T ss_dssp -----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE-EEEEET
T ss_pred -----CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE-EEEEcC
Confidence 345666664 5679999999999999999999999999999999888876567889999999999985 788999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|+.
T Consensus 213 d~~i~i 218 (312)
T 4ery_A 213 DNTLKL 218 (312)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 999875
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=188.66 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=131.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.+++|+| +++++|+|+.||.|++||+.++.. .....+.+|.+.|.++.|++. ..+++++.|++|++||+++
T Consensus 100 v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~s~d~~i~~wd~~~--- 173 (340)
T 1got_B 100 VMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIET--- 173 (340)
T ss_dssp EEEEEECT-TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET--TEEEEEETTSCEEEEETTT---
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC--CcEEEEECCCcEEEEECCC---
Confidence 78899999 899999999999999999987532 222234599999999999974 4699999999999999988
Q ss_pred CcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 518 KVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
..++.++.+ ...|.+++|+|++.++++|+.|++|++||+++++.+..+. +|...|++++|+|++. .+++|
T Consensus 174 -------~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~l~s~ 244 (340)
T 1got_B 174 -------GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGN-AFATG 244 (340)
T ss_dssp -------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSS-EEEEE
T ss_pred -------CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCC-EEEEE
Confidence 356677775 4669999999999999999999999999999999999998 7999999999999998 58999
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|++||.
T Consensus 245 s~d~~v~i 252 (340)
T 1got_B 245 SDDATCRL 252 (340)
T ss_dssp ETTSCEEE
T ss_pred cCCCcEEE
Confidence 99999985
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.85 E-value=7.2e-20 Score=189.97 Aligned_cols=147 Identities=8% Similarity=0.101 Sum_probs=127.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| ++.++++|+.||+|++||+++++....+. +|.+.|.+++|+| ++.+|++|+.|++|++||+...
T Consensus 79 V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~---- 150 (343)
T 2xzm_R 79 VSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFV--GHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGE---- 150 (343)
T ss_dssp EEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEE--CCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSC----
T ss_pred eEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEc--CCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCC----
Confidence 88999999 89999999999999999999998887665 9999999999999 6789999999999999999742
Q ss_pred ccccCCcceEEe----ecCCCeEEEEEccCC----------CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 520 ADARGNSSVATY----YDFEQLTSVHVNSTD----------DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 520 ~~l~~~~~i~t~----~~~~~V~sV~~sp~g----------~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
..... .+...|.+++|+|++ .++++++.|++|++|| .+.+....+. +|...|++++|
T Consensus 151 -------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~-~h~~~v~~~~~ 221 (343)
T 2xzm_R 151 -------CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFK-AHESNVNHLSI 221 (343)
T ss_dssp -------EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEE-CCSSCEEEEEE
T ss_pred -------ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEc-CccccceEEEE
Confidence 11122 244669999999986 7999999999999999 4566677787 79999999999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|++.+ +++|+.|++|++
T Consensus 222 s~~g~~-l~sgs~dg~v~i 239 (343)
T 2xzm_R 222 SPNGKY-IATGGKDKKLLI 239 (343)
T ss_dssp CTTSSE-EEEEETTCEEEE
T ss_pred CCCCCE-EEEEcCCCeEEE
Confidence 999985 899999999985
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-20 Score=188.75 Aligned_cols=156 Identities=12% Similarity=0.187 Sum_probs=123.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc--eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN--VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~--~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.+++|+| + ++|+|+.||+|++||+.++. ....+...+|.+.|.+++|+| ++.+|++|+.|++|++||+.....
T Consensus 17 v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 17 IWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESAD 92 (330)
T ss_dssp EEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-----
T ss_pred eeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcC
Confidence 88999998 4 99999999999999998753 333332224999999999999 578999999999999999865211
Q ss_pred CcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 518 KVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE----KPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~----k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.. ....++..+.+ ...|.+++|+|++++|++|+.|++|++||++.. +.+..+. +|...|++++|+|++. +
T Consensus 93 ~~---~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~ 167 (330)
T 2hes_X 93 RT---FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVIWHPSEA-L 167 (330)
T ss_dssp -----CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEEEEECSSSS-E
T ss_pred cc---ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEEEEECCCCC-E
Confidence 00 00234556664 466999999999999999999999999999532 4566777 7999999999999988 5
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|++||.
T Consensus 168 l~s~s~D~~i~i 179 (330)
T 2hes_X 168 LASSSYDDTVRI 179 (330)
T ss_dssp EEEEETTSCEEE
T ss_pred EEEEcCCCeEEE
Confidence 899999999985
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=196.51 Aligned_cols=159 Identities=16% Similarity=0.256 Sum_probs=124.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC---
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP--- 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~--- 516 (606)
|++++|+| ++++||+|+.||+|+|||..+++....+. +|...|.+++|+| ++.++++|+.|++|++||+....
T Consensus 69 V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~ 144 (380)
T 3iz6_a 69 VYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIK--LHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRD 144 (380)
T ss_dssp EEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEE--CCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCSSCC
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEe--cCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCcccc
Confidence 88999999 89999999999999999999988877665 7777888888887 56777777777777777764210
Q ss_pred ---C------C----ccc----------c--------------cCCcceEEe-----e-cCCCeEEEEEcc-CCCEEEEE
Q 035500 517 ---P------K----VAD----------A--------------RGNSSVATY-----Y-DFEQLTSVHVNS-TDDQFLAS 552 (606)
Q Consensus 517 ---~------~----~~~----------l--------------~~~~~i~t~-----~-~~~~V~sV~~sp-~g~~LaSg 552 (606)
. . ... + ....++..+ . |...|.+++|+| +++++++|
T Consensus 145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 224 (380)
T 3iz6_a 145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224 (380)
T ss_dssp CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence 0 0 000 0 001223333 2 345599999987 67899999
Q ss_pred eCCCcEEEEECC-CCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 553 GYSKNVALYDIN-TEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 553 s~Dg~I~IWDlr-t~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.|++|++||++ .++.+..+. +|...|++++|+|++. .+++||.|++||.
T Consensus 225 s~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~l~s~s~D~~i~l 275 (380)
T 3iz6_a 225 SCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQ-RFGTGSDDGTCRL 275 (380)
T ss_dssp ETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSS-EEEEECSSSCEEE
T ss_pred ECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCC-eEEEEcCCCeEEE
Confidence 999999999999 457788888 8999999999999998 4899999999986
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=182.51 Aligned_cols=162 Identities=14% Similarity=0.107 Sum_probs=129.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce--EEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV--ACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+| ++++||+|+.||+|++||+.++.. .....+.+|.+.|.+++|+|. ++.+|++|+.||+|++||++...
T Consensus 14 v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~ 92 (351)
T 3f3f_A 14 VHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 92 (351)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred eeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence 88999999 999999999999999999987532 122233489999999999985 47899999999999999998753
Q ss_pred CCcccccCCcceEEee-cCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCce-------------------------
Q 035500 517 PKVADARGNSSVATYY-DFEQLTSVHVNST--DDQFLASGYSKNVALYDINTEKP------------------------- 568 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k~------------------------- 568 (606)
....... ..++..+. +...|.+++|+|+ +.++++++.||.|++||+++++.
T Consensus 93 ~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (351)
T 3f3f_A 93 EECSGRR-WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDF 171 (351)
T ss_dssp CTTSSCS-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCE
T ss_pred ccccccC-cceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccccee
Confidence 2111000 13455565 4567999999999 99999999999999999986542
Q ss_pred -----------------------------------eEEEcCCCCCCeEEEEEeCCCC---eEEEEEeCCCeEEE
Q 035500 569 -----------------------------------LQLFTDMHREPINVAKFSHHSP---LCLLLLHLTTMSRC 604 (606)
Q Consensus 569 -----------------------------------v~~l~~gH~~~I~sV~fsP~g~---~LLaTgS~DgtIRc 604 (606)
+..+. +|...|++++|+|++. .++++|+.|+.|+.
T Consensus 172 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 172 CLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp EEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred EEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 33344 6899999999999983 57999999999885
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-20 Score=190.52 Aligned_cols=151 Identities=14% Similarity=0.251 Sum_probs=133.8
Q ss_pred eeEEEEcCCCC-CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNP-SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg-~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| ++ +++|+|+.||+|+|||+.+++....+...+|.+.|.+++|+|.++..|++|+.|++|++||++..
T Consensus 76 v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--- 151 (383)
T 3ei3_B 76 VTSLEWHP-THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS--- 151 (383)
T ss_dssp EEEEEECS-SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC---
T ss_pred EEEEEECC-CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC---
Confidence 88999999 66 99999999999999999998888777766899999999999966689999999999999999862
Q ss_pred cccccCCcceEEeec----CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYYD----FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~----~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
.+..+.. ...|.+++|+|+++++++|+.|+.|++||+ +++.+..+. +|...|++++|+|+++++++
T Consensus 152 --------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 152 --------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp --------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSSCEEEEEECSSCTTEEE
T ss_pred --------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCCcEEEEEECCCCCCEEE
Confidence 2333332 256999999999999999999999999999 577888888 79999999999999997899
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+|+.|++|++
T Consensus 222 s~~~d~~i~i 231 (383)
T 3ei3_B 222 TSSVDATVKL 231 (383)
T ss_dssp EEETTSEEEE
T ss_pred EEeCCCEEEE
Confidence 9999999985
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=186.91 Aligned_cols=150 Identities=11% Similarity=0.153 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-----ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-----NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-----~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
|.+++|+|.+++++++|+.||+|++||+... ..+.. +.+|...|.+++|+| ++.+++|||.|++|++||+.+
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~--~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~ 96 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS--FKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVAT 96 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEE--EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceE--EeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCC
Confidence 8899999966799999999999999998642 22333 459999999999998 678999999999999999988
Q ss_pred CCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC---
Q 035500 515 IPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP--- 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~--- 590 (606)
..++..+.+ ..+|.+++|+|++.++++|+.|++|++||++ ++.+..+. +|...|.+++|+|.+.
T Consensus 97 ----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~-~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 97 ----------GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL-GHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp ----------TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC-CCSSCEEEEEECCC-----
T ss_pred ----------CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe-ccCCcEEEEEEccCCCCCC
Confidence 346667765 5669999999999999999999999999997 55677777 7999999999999643
Q ss_pred --eEEEEEeCCCeEEE
Q 035500 591 --LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 --~LLaTgS~DgtIRc 604 (606)
..+++|+.|++|+.
T Consensus 165 ~~~~l~s~~~d~~i~~ 180 (319)
T 3frx_A 165 DSVTIISAGNDKMVKA 180 (319)
T ss_dssp -CCEEEEEETTSCEEE
T ss_pred CccEEEEEeCCCEEEE
Confidence 36899999999985
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.4e-20 Score=192.90 Aligned_cols=155 Identities=13% Similarity=0.154 Sum_probs=129.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC----eEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG----CVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg----tIklWDl~~~ 515 (606)
|.+++|+| +++++++++.|+ +++|+..++.........+|...|.+++|+| ++..+++++.|+ ++++||+...
T Consensus 179 V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~ 255 (365)
T 4h5i_A 179 VKDLHFST-DGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSG 255 (365)
T ss_dssp CCEEEECT-TSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETT
T ss_pred eEEEEEcc-CCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccc
Confidence 88999999 999999998555 7777777777766555668999999999999 668899999888 6888998763
Q ss_pred CCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 516 PPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
... ......+. +..+|++++|+|+|++||+|+.|++|+|||+++++++..+..+|...|++++|+|+|.+ ||
T Consensus 256 ~~~------~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~-la 328 (365)
T 4h5i_A 256 NTS------VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY-VA 328 (365)
T ss_dssp EEE------EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE-EE
T ss_pred eec------ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE-EE
Confidence 210 01123344 45679999999999999999999999999999999999876689999999999999984 89
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
|||.|++||.
T Consensus 329 S~S~D~tvrv 338 (365)
T 4h5i_A 329 SVSAANTIHI 338 (365)
T ss_dssp EEETTSEEEE
T ss_pred EEeCCCeEEE
Confidence 9999999996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-20 Score=193.76 Aligned_cols=151 Identities=9% Similarity=0.124 Sum_probs=131.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||+|++||+.+++....+. +|.+.|.+++|+| ++.+|++|+.||+|++||++++
T Consensus 142 v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~---- 213 (420)
T 3vl1_A 142 ITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLI--GHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTG---- 213 (420)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEE--CCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTT----
T ss_pred cEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEc--CCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCC----
Confidence 88999999 89999999999999999999988877665 9999999999999 6789999999999999999873
Q ss_pred ccccCCcceEEeec-------------------------CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 035500 520 ADARGNSSVATYYD-------------------------FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-------------------------~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~ 574 (606)
.++..+.. ...+.+++|+|+++++++|+.||.|++||+++++.+..+..
T Consensus 214 ------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 287 (420)
T 3vl1_A 214 ------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS 287 (420)
T ss_dssp ------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ------ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence 33444432 13355566688899999999999999999999998888876
Q ss_pred CCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 575 MHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 575 gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+|...|++++|+|++..++++|+.|+.|++
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v 317 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQ 317 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred ccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence 799999999999999867999999999985
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-19 Score=177.29 Aligned_cols=161 Identities=12% Similarity=0.124 Sum_probs=128.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe---------------------------------------ccC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP---------------------------------------SIG 480 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~---------------------------------------~~g 480 (606)
|++++|+| +++++|+|+.||+|++||+++++.+..+. ..+
T Consensus 70 V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~ 148 (318)
T 4ggc_A 70 ISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 148 (318)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred EEEEEECC-CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcC
Confidence 88999999 99999999999999999999887765432 235
Q ss_pred CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccc--------------------------------------
Q 035500 481 GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADA-------------------------------------- 522 (606)
Q Consensus 481 H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l-------------------------------------- 522 (606)
|...+..+.|.+ .+.++++++.||+|++||++.+.......
T Consensus 149 ~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd 227 (318)
T 4ggc_A 149 HSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227 (318)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred ccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence 677788888887 56899999999999999998643211000
Q ss_pred -cCCcceEEeecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 523 -RGNSSVATYYDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 523 -~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
..........+...+..+.|+|.++.+++++ .|+.|++||+++++++..+. +|.+.|++++|+|++.+ ++|||.|
T Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~~-l~S~s~D 305 (318)
T 4ggc_A 228 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGAT-VASAAAD 305 (318)
T ss_dssp TTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSC-EEEEETT
T ss_pred cccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCE-EEEEecC
Confidence 0011112233456688999999998777654 78999999999999999999 89999999999999985 8899999
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
++||+
T Consensus 306 ~~v~i 310 (318)
T 4ggc_A 306 ETLRL 310 (318)
T ss_dssp TEEEE
T ss_pred CeEEE
Confidence 99985
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=202.45 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=126.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE--EEE-----------------------------------------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA--CYI----------------------------------------- 476 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v--~~~----------------------------------------- 476 (606)
|++++|+| +++++|+|+.||+|+|||+.+++.. ..+
T Consensus 62 v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~ 140 (611)
T 1nr0_A 62 TTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN 140 (611)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC
T ss_pred eEEEEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCc
Confidence 88999999 9999999999999999998643321 111
Q ss_pred -eccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeC
Q 035500 477 -PSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGY 554 (606)
Q Consensus 477 -~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~ 554 (606)
.+.+|.+.|.+++|+|+++..|+|||.|++|++||... .....++.+| ..|.+++|+|+++++++|+.
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~----------~~~~~~l~~H~~~V~~v~fspdg~~las~s~ 210 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP----------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGG 210 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT----------BEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC----------CeEeeeeccccCceEEEEECCCCCEEEEEEC
Confidence 12357777778888775445789999999999999765 3456677754 56999999999999999999
Q ss_pred CCcEEEEECCCCceeEEEcC------CCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 555 SKNVALYDINTEKPLQLFTD------MHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 555 Dg~I~IWDlrt~k~v~~l~~------gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++|++||+++++.+..+.. +|.+.|++++|+|++. .+++||.|++||.
T Consensus 211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~l 265 (611)
T 1nr0_A 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKI 265 (611)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEE
Confidence 99999999999998888853 6999999999999998 4899999999985
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-19 Score=188.68 Aligned_cols=163 Identities=20% Similarity=0.281 Sum_probs=131.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-----ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP-----SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~-----~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
+.+++|+|.++.++++|+.||+|++||.+++..+..+. ..+|...|.+++|+| ++.+|++|+.||+|++||++.
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCC
Confidence 77899999889999999999999999999988776552 248999999999998 678999999999999999986
Q ss_pred CCCCcc--cccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC---
Q 035500 515 IPPKVA--DARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH--- 588 (606)
Q Consensus 515 ~~~~~~--~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~--- 588 (606)
...... ......+..++.+ ...|.+++|+|++.++++|+.|+.|++||.++++++..+. +|...|++++|+|.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSL 366 (393)
T ss_dssp -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSCTT
T ss_pred CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-CCCCCEEEEEecCCcCc
Confidence 432110 0011223445554 4569999999999999999999999999999999999999 89999999999874
Q ss_pred --CCeEEEEEeCCCeEEE
Q 035500 589 --SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 589 --g~~LLaTgS~DgtIRc 604 (606)
...+++|||.|++||+
T Consensus 367 ~p~~~~l~sgs~Dg~i~i 384 (393)
T 1erj_A 367 GPEYNVFATGSGDCKARI 384 (393)
T ss_dssp CTTCEEEEEEETTSEEEE
T ss_pred CCCCCEEEEECCCCcEEE
Confidence 2347999999999986
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=192.31 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=127.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|++++|+| ++++||+|+.||+|+|||+.++.......+.+|.+.|++++|+|. ++.+|+|||.|++|++||++.+.
T Consensus 16 V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~-- 92 (316)
T 3bg1_A 16 IHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT-- 92 (316)
T ss_dssp EEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC--
T ss_pred EEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc--
Confidence 88999999 999999999999999999988764333345599999999999753 46899999999999999998732
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCce---eEEEcCCCCCCeEEEEEeCCC---
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNST--DDQFLASGYSKNVALYDINTEKP---LQLFTDMHREPINVAKFSHHS--- 589 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k~---v~~l~~gH~~~I~sV~fsP~g--- 589 (606)
......+. |...|.+++|+|+ +.++++|+.|++|++||++.+.. ...+. +|...|++++|+|+.
T Consensus 93 ------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 93 ------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN-AHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp ------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT-SSSSCBCCCEECCCCCC-
T ss_pred ------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec-cccCCcceEEEccccCCc
Confidence 12445555 4566999999998 67999999999999999997642 33444 799999999999973
Q ss_pred -------------CeEEEEEeCCCeEEE
Q 035500 590 -------------PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 -------------~~LLaTgS~DgtIRc 604 (606)
...+++|+.|++||+
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~l 193 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKL 193 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCE
T ss_pred cccccccccCccccceEEEecCCCeEEE
Confidence 236899999999874
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-19 Score=201.58 Aligned_cols=151 Identities=12% Similarity=0.124 Sum_probs=129.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+|..+..+++|+.|++|++||..+++....+. +|.+.|.+++|+| ++.+|+|||.|++|++||+..+
T Consensus 150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~--~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g---- 222 (611)
T 1nr0_A 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG---- 222 (611)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC----
T ss_pred ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec--cccCceEEEEECC-CCCEEEEEECCCcEEEEECCCC----
Confidence 88999999434479999999999999999888777654 9999999999999 6789999999999999999874
Q ss_pred ccccCCcceEEe--------ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc------------------
Q 035500 520 ADARGNSSVATY--------YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT------------------ 573 (606)
Q Consensus 520 ~~l~~~~~i~t~--------~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~------------------ 573 (606)
.++..+ .|...|.+++|+|++.++++++.|++|++||+++++.+..+.
T Consensus 223 ------~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (611)
T 1nr0_A 223 ------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296 (611)
T ss_dssp ------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred ------cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence 334444 356779999999999999999999999999999876543321
Q ss_pred ------------------------CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 574 ------------------------DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ------------------------~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+|...|++++|+|++.+ +++|+.|++||.
T Consensus 297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-l~s~s~D~~v~~ 350 (611)
T 1nr0_A 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-LFSADAEGHINS 350 (611)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-EEEEeCCCcEEE
Confidence 279999999999999985 889999999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-19 Score=187.59 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=125.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe---------------------------------------ccC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP---------------------------------------SIG 480 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~---------------------------------------~~g 480 (606)
|++++|+| +++++|+|+.||+|+|||+++++.+..+. +.+
T Consensus 150 V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~ 228 (420)
T 4gga_A 150 ISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 228 (420)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred EEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc
Confidence 88999999 99999999999999999999887655432 124
Q ss_pred CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC---------C----cc-----c---------------------
Q 035500 481 GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP---------K----VA-----D--------------------- 521 (606)
Q Consensus 481 H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~---------~----~~-----~--------------------- 521 (606)
|...+..+.|.| .+..+++++.|+.+++||...+.. . +. +
T Consensus 229 h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd 307 (420)
T 4gga_A 229 HSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307 (420)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEE
T ss_pred cccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEe
Confidence 555666666666 456788888888888888754310 0 00 0
Q ss_pred ccCCcceEEeecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 522 ARGNSSVATYYDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 522 l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.....+...+.++..+.++.|+|+++.+++++ .|+.|++||+++++++..+. +|.+.|++++|+|+|.+ ++|||.|
T Consensus 308 ~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~-l~S~s~D 385 (420)
T 4gga_A 308 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGAT-VASAAAD 385 (420)
T ss_dssp TTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSC-EEEEETT
T ss_pred CCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCE-EEEEecC
Confidence 00123344555677899999999999887765 68999999999999999999 89999999999999985 8899999
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
++||.
T Consensus 386 ~tvri 390 (420)
T 4gga_A 386 ETLRL 390 (420)
T ss_dssp TEEEE
T ss_pred CeEEE
Confidence 99985
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-19 Score=183.29 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=126.2
Q ss_pred eeEEEE-----cCCCCCEEEEEeCCCcEEEEECCCCce-----EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 440 PRQFEY-----NPSNPSLMAFGTLDGEVIVINHENGNV-----ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 440 V~slaf-----sP~dg~~LaSGs~DGtVrIWDi~tg~~-----v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
|++++| +|.++.+||+|+.||+|++||+.++.. .....+.+|...|.+++|+| ++.+++|||.|++|++
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~l 102 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRL 102 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEETTSEEEE
T ss_pred hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEEEEcCCCcEEE
Confidence 889999 666889999999999999999875421 12223459999999999998 6689999999999999
Q ss_pred EeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEE-cCCCCCCeEEEEEeC
Q 035500 510 FDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLF-TDMHREPINVAKFSH 587 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l-~~gH~~~I~sV~fsP 587 (606)
||+++ ...+..+.+ ...|.+++|+|+++++++|+.|++|++||++........ ..+|...|.+++|+|
T Consensus 103 wd~~~----------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (343)
T 2xzm_R 103 WDLRT----------GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP 172 (343)
T ss_dssp EETTS----------SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred EECCC----------CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc
Confidence 99998 345667764 566999999999999999999999999999844332222 125899999999999
Q ss_pred CCC---------eEEEEEeCCCeEEE
Q 035500 588 HSP---------LCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~---------~LLaTgS~DgtIRc 604 (606)
++. .++++|+.|++|+.
T Consensus 173 ~~~~~~~~~~~~~~l~s~~~d~~i~i 198 (343)
T 2xzm_R 173 IMKSANKVQPFAPYFASVGWDGRLKV 198 (343)
T ss_dssp CCCSCSCCCSSCCEEEEEETTSEEEE
T ss_pred ccccccccCCCCCEEEEEcCCCEEEE
Confidence 872 36899999999985
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=180.28 Aligned_cols=161 Identities=11% Similarity=0.092 Sum_probs=129.2
Q ss_pred eeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCc---------eEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEE
Q 035500 440 PRQFEYNPS-NPSLMAFGTLDGEVIVINHENGN---------VACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVR 508 (606)
Q Consensus 440 V~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~---------~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIk 508 (606)
|.+++|+|. +++++++|+.||+|++||+.++. .... ..+|.+.|.+++|+|.. +.++++|+.||+|+
T Consensus 60 v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 137 (351)
T 3f3f_A 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCT--LNDSKGSLYSVKFAPAHLGLKLACLGNDGILR 137 (351)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEE--ECCCSSCEEEEEECCGGGCSEEEEEETTCEEE
T ss_pred EEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeee--ecccCCceeEEEEcCCCCCcEEEEecCCCcEE
Confidence 889999995 58999999999999999998763 3333 44899999999999942 78999999999999
Q ss_pred EEeCCCCCCCcccc------------------------------------------------cCC--cceEEee-cCCCe
Q 035500 509 LFDLNHIPPKVADA------------------------------------------------RGN--SSVATYY-DFEQL 537 (606)
Q Consensus 509 lWDl~~~~~~~~~l------------------------------------------------~~~--~~i~t~~-~~~~V 537 (606)
+||++......... ... ..+..+. |..+|
T Consensus 138 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 217 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLI 217 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCE
T ss_pred EecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcce
Confidence 99988654211000 000 1133444 34669
Q ss_pred EEEEEccCC----CEEEEEeCCCcEEEEECCCC----------------------------------------------c
Q 035500 538 TSVHVNSTD----DQFLASGYSKNVALYDINTE----------------------------------------------K 567 (606)
Q Consensus 538 ~sV~~sp~g----~~LaSgs~Dg~I~IWDlrt~----------------------------------------------k 567 (606)
.+++|+|++ +++++|+.||.|++||++++ +
T Consensus 218 ~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (351)
T 3f3f_A 218 RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE 297 (351)
T ss_dssp EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEE
T ss_pred eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccccc
Confidence 999999998 79999999999999999875 5
Q ss_pred eeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 568 PLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 568 ~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+..+. +|...|++++|+|++. ++++|+.|+.|+.
T Consensus 298 ~~~~~~-~h~~~v~~~~~s~~~~-~l~s~~~dg~v~i 332 (351)
T 3f3f_A 298 LLSEHD-DHNGEVWSVSWNLTGT-ILSSAGDDGKVRL 332 (351)
T ss_dssp EEEEEC-TTSSCEEEEEECSSSC-CEEEEETTSCEEE
T ss_pred EEEEEe-cccccEEEEEEcCCCC-EEEEecCCCcEEE
Confidence 566777 7999999999999998 5899999999985
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-19 Score=194.54 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=129.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| +++++++|+.||+|++||.. ++....+. +|...|.+++|+| ++.+|++++.|++|++||...
T Consensus 429 v~~~~~s~-d~~~l~~~~~d~~v~~w~~~-~~~~~~~~--~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~~----- 498 (577)
T 2ymu_A 429 VWGVAFSP-DDQTIASASDDKTVKLWNRN-GQLLQTLT--GHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNG----- 498 (577)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETT-SCEEEEEE--CCSSCEEEEEECT-TSCEEEEEETTSEEEEEETTS-----
T ss_pred eEEEEECC-CCCEEEEEcCCCEEEEEECC-CCEEEEEc--CCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCCC-----
Confidence 78999999 89999999999999999975 56655544 9999999999999 678999999999999999643
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..+.+ ...|++++|+|+++++++++.|+.|++||. +++.+..+. +|.+.|++++|+|++.+ |+|+|.
T Consensus 499 ------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-~h~~~v~~~~fs~dg~~-l~s~~~ 569 (577)
T 2ymu_A 499 ------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQT-IASASS 569 (577)
T ss_dssp ------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSC-EEEEET
T ss_pred ------CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-CCCCCEEEEEEcCCCCE-EEEEeC
Confidence 35666765 466999999999999999999999999995 688888998 89999999999999996 778999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++|+.
T Consensus 570 D~~i~~ 575 (577)
T 2ymu_A 570 DKTVKL 575 (577)
T ss_dssp TSCEEE
T ss_pred CCEEEE
Confidence 999985
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-19 Score=187.28 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=132.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-------ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-------NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-------~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
|.+++|+|.+++++|+|+.||+|+|||+.++ +....+ .+|.+.|.+++|+|++...+++|+.||+|++||+
T Consensus 84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 161 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL--EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161 (402)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE--ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET
T ss_pred EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe--cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC
Confidence 8899999988899999999999999999887 344444 4899999999999965579999999999999999
Q ss_pred CCCCCCcccccCCcceEEe--e-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC-eEEEEEeCC
Q 035500 513 NHIPPKVADARGNSSVATY--Y-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP-INVAKFSHH 588 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~--~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~-I~sV~fsP~ 588 (606)
+. ...+..+ . |...|.+++|+|+++++++++.|+.|++||+++++.+..+..+|.+. +.++.|+|+
T Consensus 162 ~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (402)
T 2aq5_A 162 GT----------GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE 231 (402)
T ss_dssp TT----------TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST
T ss_pred CC----------CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC
Confidence 98 3456666 4 45679999999999999999999999999999999999883378776 999999999
Q ss_pred CCeEEEEE---eCCCeEEE
Q 035500 589 SPLCLLLL---HLTTMSRC 604 (606)
Q Consensus 589 g~~LLaTg---S~DgtIRc 604 (606)
+. ++++| +.|+.|++
T Consensus 232 ~~-~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 232 GK-ILTTGFSRMSERQVAL 249 (402)
T ss_dssp TE-EEEEEECTTCCEEEEE
T ss_pred Cc-EEEEeccCCCCceEEE
Confidence 87 57788 78998875
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=194.43 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=126.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+|.++++|++|+.||+|++||++++..........+...+.+++|+| ++.+|++|+.||+|++||++..
T Consensus 167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~---- 241 (435)
T 4e54_B 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGK---- 241 (435)
T ss_dssp CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSC----
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcc----
Confidence 88999999889999999999999999998766554444345566788999998 6789999999999999998752
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEE--cCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLF--TDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l--~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.+.++. |...|.+++|+|+++ ++++|+.|++|++||+++.+....+ ..+|...|++++|+|++.+ +++
T Consensus 242 -------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~-l~s 313 (435)
T 4e54_B 242 -------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR-LLT 313 (435)
T ss_dssp -------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE-EEE
T ss_pred -------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe-eEE
Confidence 233444 456799999999985 8899999999999999987654333 2369999999999999985 889
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
|+.|++|+.
T Consensus 314 ~~~D~~i~i 322 (435)
T 4e54_B 314 TDQKSEIRV 322 (435)
T ss_dssp EESSSCEEE
T ss_pred EcCCCEEEE
Confidence 999999985
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-19 Score=182.29 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=137.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec-----------cCCCCCEEEEEEeeCCCCEEEEEECCCeEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS-----------IGGTNSVLGLCWLKKYPSKLVAGSDSGCVR 508 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~-----------~gH~~~V~~L~fsp~~~~~LaSgS~DgtIk 508 (606)
|.+++|+|.+++++|+|+.||.|++||+.++.....+.. .+|...|.+++|+|.++.++++|+.||+|+
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 125 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence 889999998889999999999999999998766544331 259999999999997778999999999999
Q ss_pred EEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC---CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 509 LFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD---DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 509 lWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g---~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
+||+.. ...+..+.+...+.++.|+|.+ .++++++.|+.|++||+++++.+..+. +|...|++++|
T Consensus 126 iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~v~~~~~ 194 (408)
T 4a11_B 126 VWDTNT----------LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSW 194 (408)
T ss_dssp EEETTT----------TEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-CCCSCEEEEEE
T ss_pred EeeCCC----------CccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-CCCCcEEEEEE
Confidence 999998 4567777788889999999965 499999999999999999999999998 79999999999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|++.+++++|+.|+.|++
T Consensus 195 ~~~~~~ll~~~~~dg~i~i 213 (408)
T 4a11_B 195 SPRYDYILATASADSRVKL 213 (408)
T ss_dssp CSSCTTEEEEEETTSCEEE
T ss_pred CCCCCcEEEEEcCCCcEEE
Confidence 9999988999999999985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.3e-20 Score=202.94 Aligned_cols=148 Identities=12% Similarity=0.130 Sum_probs=125.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-EEEEeccCCCCCEEEEE--EeeCCC-CEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-ACYIPSIGGTNSVLGLC--WLKKYP-SKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~~~gH~~~V~~L~--fsp~~~-~~LaSgS~DgtIklWDl~~~ 515 (606)
|++++|+| + +.||+|+.||+|++||++++.. ...+ .+|.+.|.+++ |+| ++ .+|+|||.|++|++||++..
T Consensus 269 v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~~~~~~--~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 269 ITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEVPSFYD--QVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp EEEEEESS-S-SEEEEEETTSEEEEEETTBCSSCSEEE--ECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGH
T ss_pred EEEEEecC-C-CeEEEEeCCCEEEEEECCCCCCceEEe--ecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCC
Confidence 88999998 4 4899999999999999987643 2333 48999999994 555 54 78999999999999999873
Q ss_pred CCCcccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.+..++.++ ..|.+++|+|++..+++++.|++|++||++++..+..+. +|.+.|++++|+|+++.
T Consensus 344 ----------~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~- 411 (524)
T 2j04_B 344 ----------ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPM- 411 (524)
T ss_dssp ----------HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCB-
T ss_pred ----------CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCCe-
Confidence 344444433 248899999999999999999999999999999888888 79999999999999985
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++||.|++||+
T Consensus 412 l~Sgs~Dgtv~l 423 (524)
T 2j04_B 412 VLAGSADGSLII 423 (524)
T ss_dssp CEEEETTTEEEC
T ss_pred EEEEECCCEEEE
Confidence 789999999985
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-20 Score=190.29 Aligned_cols=153 Identities=10% Similarity=0.070 Sum_probs=123.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG--NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg--~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|++++|+| +++++|+|+.||.|+|||+.++ +... .+.+|.+.|.+++|+| ++.+|++|+.||+|++||+.....
T Consensus 14 v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 14 SYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHAR--TFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECC--CBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC------C
T ss_pred EEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEE--EEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCc
Confidence 78899999 9999999999999999999987 4444 3459999999999999 568999999999999999988431
Q ss_pred CcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc---eeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 518 KVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK---PLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k---~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
..+...+. |...|.+++|+|+++++++|+.|+.|++||+++++ ....+..+|...|++++|+|++. ++
T Consensus 90 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l 161 (377)
T 3dwl_C 90 -------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LL 161 (377)
T ss_dssp -------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EE
T ss_pred -------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EE
Confidence 12344444 55679999999999999999999999999999887 47777734999999999999987 58
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++|+.|++|+.
T Consensus 162 ~~~~~d~~i~i 172 (377)
T 3dwl_C 162 AAGCADRKAYV 172 (377)
T ss_dssp EEEESSSCEEE
T ss_pred EEEeCCCEEEE
Confidence 99999999875
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=177.65 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=129.6
Q ss_pred eeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPS-NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|++++|+|. +++++++|+.||.|++||+.+++........+|...|.+++|+|.. +.++++++.||+|++||++....
T Consensus 58 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 58 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred EEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 889999872 2899999999999999999998744444455899999999999953 68999999999999999988421
Q ss_pred CcccccCCcceEEe-ecCCCeEEEEEcc-------------CCCEEEEEeCCCcEEEEECCCCc----eeEEEcCCCCCC
Q 035500 518 KVADARGNSSVATY-YDFEQLTSVHVNS-------------TDDQFLASGYSKNVALYDINTEK----PLQLFTDMHREP 579 (606)
Q Consensus 518 ~~~~l~~~~~i~t~-~~~~~V~sV~~sp-------------~g~~LaSgs~Dg~I~IWDlrt~k----~v~~l~~gH~~~ 579 (606)
.....+ .+...|.+++|+| ++.++++|+.|+.|++||+++++ ....+. +|...
T Consensus 138 --------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~ 208 (379)
T 3jrp_A 138 --------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDW 208 (379)
T ss_dssp --------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSC
T ss_pred --------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCc
Confidence 122333 3567799999999 58999999999999999999765 345666 79999
Q ss_pred eEEEEEeCCC--CeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHS--PLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g--~~LLaTgS~DgtIRc 604 (606)
|++++|+|++ ..++++++.|+.|++
T Consensus 209 v~~~~~sp~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 209 VRDVAWSPTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred EeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence 9999999994 457999999999875
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=8e-19 Score=199.60 Aligned_cols=149 Identities=12% Similarity=0.139 Sum_probs=130.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||+|+|||+.++.....+. +|.+.|.+++|+| ++..|+|||.|++|++||....
T Consensus 433 v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~--~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~---- 504 (694)
T 3dm0_A 433 VEDVVLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFV--GHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGE---- 504 (694)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSC----
T ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEECCCCcceeEEe--CCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCC----
Confidence 88999999 99999999999999999999998877665 9999999999999 5688999999999999998652
Q ss_pred ccccCCcceEEe----ecCCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 520 ADARGNSSVATY----YDFEQLTSVHVNSTD--DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 520 ~~l~~~~~i~t~----~~~~~V~sV~~sp~g--~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
...... .|...|.+++|+|++ ..+++|+.|++|++||+++++....+. +|.+.|++++|+|++. ++
T Consensus 505 ------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~-~l 576 (694)
T 3dm0_A 505 ------CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGS-LC 576 (694)
T ss_dssp ------EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EE
T ss_pred ------cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCC-EE
Confidence 111111 134569999999986 689999999999999999999999998 7999999999999998 58
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++|+.|++|++
T Consensus 577 ~sg~~Dg~i~i 587 (694)
T 3dm0_A 577 ASGGKDGVVLL 587 (694)
T ss_dssp EEEETTSBCEE
T ss_pred EEEeCCCeEEE
Confidence 99999999985
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=178.48 Aligned_cols=154 Identities=13% Similarity=0.103 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|++++|+| +++++|+|+.||.|+|||+..+.......+.+|.+.|++++|+|. ++.+|++|+.||+|++||+..+.
T Consensus 14 v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-- 90 (379)
T 3jrp_A 14 IHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-- 90 (379)
T ss_dssp EEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE--
T ss_pred EEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc--
Confidence 88999999 899999999999999999984433333344599999999999863 27899999999999999998732
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCce--eEEEcCCCCCCeEEEEEeCC-----
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNST--DDQFLASGYSKNVALYDINTEKP--LQLFTDMHREPINVAKFSHH----- 588 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k~--v~~l~~gH~~~I~sV~fsP~----- 588 (606)
...+..+. +...|.+++|+|+ +.++++++.|+.|++||++++.. ...+. +|...|++++|+|.
T Consensus 91 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 91 ------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEED 163 (379)
T ss_dssp ------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECCCC----
T ss_pred ------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcCcccccc
Confidence 12445555 4567999999999 89999999999999999998743 44555 69999999999994
Q ss_pred --------CCeEEEEEeCCCeEEE
Q 035500 589 --------SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 589 --------g~~LLaTgS~DgtIRc 604 (606)
+. .+++|+.|+.|+.
T Consensus 164 ~~~~~~~~~~-~l~~~~~dg~i~i 186 (379)
T 3jrp_A 164 GEHNGTKESR-KFVTGGADNLVKI 186 (379)
T ss_dssp ------CTTC-EEEEEETTSCEEE
T ss_pred ccccCCCCCC-EEEEEeCCCeEEE
Confidence 55 6899999999885
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=183.02 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=133.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| +++++++|+.||.|++||+.+++....+. +|...|.+++|++ ..+++|+.||+|++||++..
T Consensus 137 v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~---- 206 (401)
T 4aez_A 137 VASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMA--GHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIA---- 206 (401)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEET---TEEEEEETTSEEEEEETTSS----
T ss_pred EEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEec--CCCCceEEEEECC---CEEEEEcCCCCEEEEecccC----
Confidence 88999999 99999999999999999999998887665 9999999999964 69999999999999999863
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe-
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH- 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS- 597 (606)
...+..+. |...|.+++|+|+++++++|+.|+.|++||+++++++..+. +|...|.+++|+|++..++++|+
T Consensus 207 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~g 280 (401)
T 4aez_A 207 -----NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGG 280 (401)
T ss_dssp -----SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECC
T ss_pred -----cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecC
Confidence 33455665 45669999999999999999999999999999999999998 79999999999999988999977
Q ss_pred -CCCeEEE
Q 035500 598 -LTTMSRC 604 (606)
Q Consensus 598 -~DgtIRc 604 (606)
.|+.|+.
T Consensus 281 s~d~~i~i 288 (401)
T 4aez_A 281 TMDKQIHF 288 (401)
T ss_dssp TTTCEEEE
T ss_pred CCCCEEEE
Confidence 7998875
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-20 Score=188.31 Aligned_cols=157 Identities=16% Similarity=0.158 Sum_probs=126.2
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.+++|+| .++++||+|+.||+|++||++++.......+.+|.+.|.+++|+|+. +.+|++|+.|++|++||++....
T Consensus 60 V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~ 139 (316)
T 3bg1_A 60 VWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ 139 (316)
T ss_dssp EEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred EEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence 88999976 35889999999999999999987543333455899999999999953 67899999999999999987321
Q ss_pred CcccccCCcceEEee-cCCCeEEEEEccC-----------------CCEEEEEeCCCcEEEEECCCC---ceeEEEcCCC
Q 035500 518 KVADARGNSSVATYY-DFEQLTSVHVNST-----------------DDQFLASGYSKNVALYDINTE---KPLQLFTDMH 576 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~-~~~~V~sV~~sp~-----------------g~~LaSgs~Dg~I~IWDlrt~---k~v~~l~~gH 576 (606)
......+. |...|.+++|+|+ +.+|++|+.|++|++||++.+ +.+..+. +|
T Consensus 140 -------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h 211 (316)
T 3bg1_A 140 -------WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AH 211 (316)
T ss_dssp -------EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CC
T ss_pred -------cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cC
Confidence 00112223 3456899999997 368999999999999999865 3566777 79
Q ss_pred CCCeEEEEEeCCC---CeEEEEEeCCCeEEE
Q 035500 577 REPINVAKFSHHS---PLCLLLLHLTTMSRC 604 (606)
Q Consensus 577 ~~~I~sV~fsP~g---~~LLaTgS~DgtIRc 604 (606)
...|++++|+|++ ..++++||.|++|++
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 9999999999986 247999999999985
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=186.95 Aligned_cols=153 Identities=8% Similarity=0.019 Sum_probs=119.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| +++++++|+.||+|++||+.++. ........+|...|.+++|+| ++.+|++|+.|++|++||++....
T Consensus 58 v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~- 134 (377)
T 3dwl_C 58 VTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQEND- 134 (377)
T ss_dssp EEEEEECT-TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC------
T ss_pred EEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCccc-
Confidence 88999999 89999999999999999999877 222334558999999999999 678999999999999999988421
Q ss_pred cccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------------------CceeEEEcCCCCC
Q 035500 519 VADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT------------------EKPLQLFTDMHRE 578 (606)
Q Consensus 519 ~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt------------------~k~v~~l~~gH~~ 578 (606)
......+. |...|.+++|+|+++++++++.|++|++||+++ ++.+..+ +|..
T Consensus 135 ------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 206 (377)
T 3dwl_C 135 ------WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGG 206 (377)
T ss_dssp ------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSS
T ss_pred ------ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCc
Confidence 11344555 456799999999999999999999999999963 3445555 6999
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 579 PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|++++|+|++.+ +++|+.|++|+.
T Consensus 207 ~v~~~~~sp~~~~-l~~~~~d~~i~i 231 (377)
T 3dwl_C 207 WVHAVGFSPSGNA-LAYAGHDSSVTI 231 (377)
T ss_dssp SEEEEEECTTSSC-EEEEETTTEEC-
T ss_pred eEEEEEECCCCCE-EEEEeCCCcEEE
Confidence 9999999999985 889999999874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=186.07 Aligned_cols=153 Identities=14% Similarity=0.221 Sum_probs=132.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC---ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG---NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg---~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|.+++|+|.++.++++|+.||.|++||++++ +....+. +|...|.+++|+|.+...+++|+.||+|++||++..
T Consensus 234 v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~- 310 (430)
T 2xyi_A 234 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD--AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL- 310 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-
T ss_pred EeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee--cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-
Confidence 8899999988899999999999999999876 3444443 899999999999976668999999999999999974
Q ss_pred CCcccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCC--------------CceeEEEcCCCCCCe
Q 035500 517 PKVADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYSKNVALYDINT--------------EKPLQLFTDMHREPI 580 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt--------------~k~v~~l~~gH~~~I 580 (606)
..++..+. |...|.+++|+|++. ++++++.|+.|++||++. .+.+..+. +|...|
T Consensus 311 --------~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v 381 (430)
T 2xyi_A 311 --------KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKI 381 (430)
T ss_dssp --------TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC-CCSSCE
T ss_pred --------CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC-CCCCCc
Confidence 24566776 457799999999984 799999999999999987 24566666 799999
Q ss_pred EEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 581 NVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 581 ~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++++|+|++++++++++.|+.|++
T Consensus 382 ~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 382 SDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp EEEEECSSSTTEEEEEETTSEEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEE
Confidence 999999999988999999999885
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=185.69 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=131.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce----EE-EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV----AC-YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~----v~-~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
+.+++|+|....++++|+.||+|++||+.++.. .. .....+|...|.+++|+|.++..|++++.||.|++||++.
T Consensus 184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~ 263 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263 (430)
T ss_dssp CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 778999994444999999999999999987332 11 1234489999999999997788999999999999999997
Q ss_pred CCCCcccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 515 IPPKVADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYSKNVALYDINT-EKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt-~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
... ..++..+. |...|++++|+|++. ++++|+.||.|++||+++ ++++..+. +|...|++++|+|++++
T Consensus 264 ~~~-------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 264 NNT-------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNET 335 (430)
T ss_dssp SCS-------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTT
T ss_pred CCC-------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCC
Confidence 421 23455554 456799999999986 799999999999999998 56788888 79999999999999988
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
++++|+.|+.|++
T Consensus 336 ~l~s~~~d~~i~i 348 (430)
T 2xyi_A 336 ILASSGTDRRLHV 348 (430)
T ss_dssp EEEEEETTSCCEE
T ss_pred EEEEEeCCCcEEE
Confidence 9999999999875
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-18 Score=174.35 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=128.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce---EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV---ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~---v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+|.++++|||||.||+|+|||+.+++. .....+.+|...|.+++|+| ++.++++|+.|+.|++|+.....
T Consensus 41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~ 119 (340)
T 4aow_A 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGT 119 (340)
T ss_dssp EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC-CCCEEEEEcccccceEEeecccc
Confidence 899999996689999999999999999876542 22223459999999999998 67899999999999999987642
Q ss_pred CCccc------------------------------ccC-CcceEE--ee-cCCCeEEEEEccCC--CEEEEEeCCCcEEE
Q 035500 517 PKVAD------------------------------ARG-NSSVAT--YY-DFEQLTSVHVNSTD--DQFLASGYSKNVAL 560 (606)
Q Consensus 517 ~~~~~------------------------------l~~-~~~i~t--~~-~~~~V~sV~~sp~g--~~LaSgs~Dg~I~I 560 (606)
..... +.. ...... .. +...+..++|++++ .++++++.|+.|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i 199 (340)
T 4aow_A 120 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199 (340)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence 11000 000 000111 11 23558999999875 58899999999999
Q ss_pred EECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 561 YDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 561 WDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
||+++++.+..+. +|.+.|++++|+|++. ++++|+.|++|+.
T Consensus 200 ~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~i 241 (340)
T 4aow_A 200 WNLANCKLKTNHI-GHTGYLNTVTVSPDGS-LCASGGKDGQAML 241 (340)
T ss_dssp EETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTCEEEE
T ss_pred EECCCCceeeEec-CCCCcEEEEEECCCCC-EEEEEeCCCeEEE
Confidence 9999999999998 7999999999999998 5889999999985
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-19 Score=184.42 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=135.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc----CCCCCEEEEEEeeCCCCEEEEEECCC---eEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI----GGTNSVLGLCWLKKYPSKLVAGSDSG---CVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~----gH~~~V~~L~fsp~~~~~LaSgS~Dg---tIklWDl 512 (606)
|.+++|+|..+.++++|+.||.|++||+++++....+... +|...|.+++|+|++..++++++.|+ .|++||+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 7899999944899999999999999999999888766532 23789999999997667999999999 9999999
Q ss_pred CCCCCCcccccCCcceEEee--cCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 513 NHIPPKVADARGNSSVATYY--DFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
+... .++..+. |...|.+++|+| ++.++++++.|++|++||+++++.+..+. +|...|++++|+|++
T Consensus 248 ~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~ 317 (416)
T 2pm9_A 248 RNAN---------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-ARGNWCFKTKFAPEA 317 (416)
T ss_dssp TSTT---------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE-CSSSCCCCEEECTTC
T ss_pred CCCC---------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec-CCCCceEEEEECCCC
Confidence 9842 3445555 556799999999 88999999999999999999999999999 799999999999999
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
+.++++++.|+.|+.
T Consensus 318 ~~~l~s~~~d~~i~i 332 (416)
T 2pm9_A 318 PDLFACASFDNKIEV 332 (416)
T ss_dssp TTEEEECCSSSEEEE
T ss_pred CCEEEEEecCCcEEE
Confidence 668999999999985
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-18 Score=173.89 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=135.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++|+| +++++++|+.||.|++||+.+ +.....+. +|...|.+++|+| ++.+|++++.||.|++||++.
T Consensus 178 ~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~---- 249 (369)
T 3zwl_B 178 ATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSID--LHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVST---- 249 (369)
T ss_dssp EEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEE--CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT----
T ss_pred eeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEe--cCCCceeEEEECC-CCCEEEEecCCceEEEEECCC----
Confidence 78999999 999999999999999999998 66666555 8999999999999 678999999999999999998
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC--------------cEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK--------------NVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg--------------~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
...+..+.+..++.+++|+|++.++++++.++ .+++||.++++.+..+. +|...|++++
T Consensus 250 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~ 322 (369)
T 3zwl_B 250 ------LQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ-GHFGPLNTVA 322 (369)
T ss_dssp ------CCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE-CCSSCEEEEE
T ss_pred ------CceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee-cccCcEEEEE
Confidence 45677777888899999999999999999988 89999999999999998 7999999999
Q ss_pred EeCCCCeEEEEEeCCCeEEE
Q 035500 585 FSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 585 fsP~g~~LLaTgS~DgtIRc 604 (606)
|+|++. ++++|+.|+.|++
T Consensus 323 ~s~~~~-~l~s~~~dg~v~i 341 (369)
T 3zwl_B 323 ISPQGT-SYASGGEDGFIRL 341 (369)
T ss_dssp ECTTSS-EEEEEETTSEEEE
T ss_pred ECCCCC-EEEEEcCCCeEEE
Confidence 999998 5889999999985
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-18 Score=174.06 Aligned_cols=149 Identities=20% Similarity=0.264 Sum_probs=131.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||.|++||+.+++....+. +|.+.|.+++|+| ++.+|++++.||+|++||+.+
T Consensus 35 v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~----- 105 (369)
T 3zwl_B 35 LTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLD--GHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSN----- 105 (369)
T ss_dssp EEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTT-----
T ss_pred EEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhh--hcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-----
Confidence 88999999 99999999999999999999999887665 8999999999998 678999999999999999988
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCCc-----------eeEEEcCCCCC--CeE
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-----KNVALYDINTEK-----------PLQLFTDMHRE--PIN 581 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D-----g~I~IWDlrt~k-----------~v~~l~~gH~~--~I~ 581 (606)
...+..+.+..+|.+++|+|++.++++++.+ +.|++||++.+. .+..+. +|.. .+.
T Consensus 106 -----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 179 (369)
T 3zwl_B 106 -----GQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THEGLDAAT 179 (369)
T ss_dssp -----CCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCTTCCCEE
T ss_pred -----CcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCcCcccee
Confidence 4567777788889999999999999999999 999999999764 334444 4666 999
Q ss_pred EEEEeCCCCeEEEEEeCCCeEEE
Q 035500 582 VAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 582 sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+++|+|++.. +++|+.|+.|+.
T Consensus 180 ~~~~~~~~~~-l~~~~~dg~i~i 201 (369)
T 3zwl_B 180 VAGWSTKGKY-IIAGHKDGKISK 201 (369)
T ss_dssp EEEECGGGCE-EEEEETTSEEEE
T ss_pred EEEEcCCCCE-EEEEcCCCEEEE
Confidence 9999999984 788999998875
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-18 Score=175.43 Aligned_cols=118 Identities=16% Similarity=0.336 Sum_probs=100.8
Q ss_pred eeEEEEcCCC--CCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSN--PSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~d--g~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+|.. ++++++|+.||.|++||+.+ +... .....+|.+.|.+++|+| ++.+|++|+.||+|++||+..
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~-- 117 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-PKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSS-- 117 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-EEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT--
T ss_pred eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-EEEeccccCCEEEEEECc-CCCEEEEEcCCCcEEEEEcCC--
Confidence 8899999943 79999999999999999987 4444 223448999999999999 678999999999999999998
Q ss_pred CCcccccCCcceEEeecCCCeEEEEE--ccCCCEEEEEeCCCcEEEEECCCCcee
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHV--NSTDDQFLASGYSKNVALYDINTEKPL 569 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~--sp~g~~LaSgs~Dg~I~IWDlrt~k~v 569 (606)
...+....+...|.+++| +|++.++++++.|+.|++||+++++.+
T Consensus 118 --------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 164 (368)
T 3mmy_A 118 --------NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164 (368)
T ss_dssp --------TEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS
T ss_pred --------CCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE
Confidence 345556667788999999 888899999999999999999877543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=175.55 Aligned_cols=155 Identities=11% Similarity=0.140 Sum_probs=126.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEE--eeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCW--LKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~f--sp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.+++|+| +++++++|+.||.|++||+++++.... .+|...|.+++| +| ++.++++|+.||+|++||++....
T Consensus 89 v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 89 VLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQI---AQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSC
T ss_pred EEEEEECc-CCCEEEEEcCCCcEEEEEcCCCCceee---ccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcE
Confidence 88999999 999999999999999999999887653 379999999999 55 557899999999999999986532
Q ss_pred Cccc---------------------------------------------------------------c------------
Q 035500 518 KVAD---------------------------------------------------------------A------------ 522 (606)
Q Consensus 518 ~~~~---------------------------------------------------------------l------------ 522 (606)
.... +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 164 MMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp SEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred EEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 1000 0
Q ss_pred --cCC---cceEEeecCC-------------CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 523 --RGN---SSVATYYDFE-------------QLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 523 --~~~---~~i~t~~~~~-------------~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
... ..+..+..+. +|.+++|+|+++++++|+.||.|++||+++++.+..+. +|...|++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~ 322 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACC 322 (368)
T ss_dssp ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSCEEEEE
T ss_pred ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CCCCCceEEE
Confidence 000 1222333332 69999999999999999999999999999999999999 7999999999
Q ss_pred EeCCCCeEEEEEeCCCe
Q 035500 585 FSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 585 fsP~g~~LLaTgS~Dgt 601 (606)
|+|++.+ +++||.|+.
T Consensus 323 ~s~~g~~-l~~~s~d~~ 338 (368)
T 3mmy_A 323 FNHNGNI-FAYASSYDW 338 (368)
T ss_dssp ECTTSSC-EEEEECCCS
T ss_pred ECCCCCe-EEEEecccc
Confidence 9999996 677777653
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-18 Score=178.55 Aligned_cols=150 Identities=16% Similarity=0.221 Sum_probs=131.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC---C---CCCEEEEEEeeCCCCEEEEEECC---CeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG---G---TNSVLGLCWLKKYPSKLVAGSDS---GCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g---H---~~~V~~L~fsp~~~~~LaSgS~D---gtIklW 510 (606)
+.+++|+| ++ ++++|+.||.|++||+++++.+..+. + | ...|.+++|+| ++.+|++++.| |.|++|
T Consensus 189 i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 189 ATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFE--SQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp CCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEE--CCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEE
T ss_pred ceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEe--ccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEE
Confidence 78999999 77 99999999999999999988887665 6 8 89999999999 57899999999 999999
Q ss_pred eCCCCCCCcccccCCcceEEee--------------cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC--
Q 035500 511 DLNHIPPKVADARGNSSVATYY--------------DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD-- 574 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~--------------~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~-- 574 (606)
|++.. .++..+. +...|.+++|+|+++++++++.|+.|++||+++++.+..+..
T Consensus 264 d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (397)
T 1sq9_A 264 ETEFG----------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 333 (397)
T ss_dssp ETTTC----------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred ECCCC----------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc
Confidence 99873 3455555 456799999999999999999999999999999999888871
Q ss_pred ---CC---------------CCCeEEEEEeCCCC---------eEEEEEeCCCeEEE
Q 035500 575 ---MH---------------REPINVAKFSHHSP---------LCLLLLHLTTMSRC 604 (606)
Q Consensus 575 ---gH---------------~~~I~sV~fsP~g~---------~LLaTgS~DgtIRc 604 (606)
+| ...|++++|+|++. .++++|+.|+.|++
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i 390 (397)
T 1sq9_A 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 390 (397)
T ss_dssp GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred CcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence 36 89999999999983 46999999999985
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-18 Score=171.69 Aligned_cols=150 Identities=13% Similarity=0.129 Sum_probs=128.7
Q ss_pred eeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPS-NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++|++. ...++++|+.|+.|++||..+++....+. +|.+.|.+++|+| ++.+|++|+.||+|++||++.
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~--~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~---- 246 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE---- 246 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTT----
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec--CCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEecc----
Confidence 677889873 34578999999999999999998887655 8999999999999 678999999999999999998
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc--------CCCCCCeEEEEEeCCCC
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT--------DMHREPINVAKFSHHSP 590 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~--------~gH~~~I~sV~fsP~g~ 590 (606)
..++..+.++..|.++.|+|++.++ +++.|+.|++||++++..+..+. .+|...|++++|+|++.
T Consensus 247 ------~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 247 ------GKHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp ------TEEEEEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred ------CceeeeecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 4577888888899999999977654 56678999999999887765554 25889999999999998
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
+ +++|+.|++||+
T Consensus 320 ~-l~sgs~Dg~v~i 332 (340)
T 4aow_A 320 T-LFAGYTDNLVRV 332 (340)
T ss_dssp E-EEEEETTSCEEE
T ss_pred E-EEEEeCCCEEEE
Confidence 5 889999999985
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.8e-19 Score=178.79 Aligned_cols=149 Identities=17% Similarity=0.291 Sum_probs=128.8
Q ss_pred eeEEEEcCCC----CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSN----PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~d----g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
|.+++|+| + +.++++|+.||.|++||+.+++.+..+. +|...|.+++|+|.++..|++|+.||+|++||++.
T Consensus 72 v~~~~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~- 147 (366)
T 3k26_A 72 FYTCAWTY-DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT- 147 (366)
T ss_dssp EEEEEEEE-CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-
T ss_pred EEEEEecc-CCCCCCCEEEEecCCCEEEEEEchhceEeeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-
Confidence 88999999 5 5699999999999999999999887665 89999999999996778999999999999999987
Q ss_pred CCCcccccCCcceEEe----ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc------------------
Q 035500 516 PPKVADARGNSSVATY----YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT------------------ 573 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~----~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~------------------ 573 (606)
...+..+ .+...|.+++|+|+++++++++.||.|++||+++++....+.
T Consensus 148 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (366)
T 3k26_A 148 ---------DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQK 218 (366)
T ss_dssp ---------TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEE
T ss_pred ---------CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccccee
Confidence 3456665 355679999999999999999999999999999876543332
Q ss_pred ---------CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 574 ---------DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ---------~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+|...|++++|+ +. ++++++.|+.|++
T Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~ 255 (366)
T 3k26_A 219 IHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVC 255 (366)
T ss_dssp ECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEE
T ss_pred eccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEE
Confidence 1399999999999 44 6899999999875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=178.17 Aligned_cols=152 Identities=11% Similarity=0.091 Sum_probs=128.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc--eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN--VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~--~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|++++|+| +++++|+|+.||.|++||..+++ ....+ .+|...|.+++|+| ++.+|++|+.||+|++||+.....
T Consensus 11 i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 11 ISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHEL--KEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEE--ECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE
T ss_pred eEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeee--cCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCee
Confidence 78999999 99999999999999999999887 55544 48999999999999 678999999999999999977310
Q ss_pred CcccccCCcceEE-eecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce---eEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 518 KVADARGNSSVAT-YYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP---LQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 518 ~~~~l~~~~~i~t-~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~---v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
..... ..+...|.+++|+|+++++++++.|+.|++||++.++. ...+..+|...|++++|+|++. .+
T Consensus 87 --------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l 157 (372)
T 1k8k_C 87 --------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LL 157 (372)
T ss_dssp --------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EE
T ss_pred --------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EE
Confidence 11222 23566799999999999999999999999999998873 4455447999999999999988 58
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++|+.|+.|+.
T Consensus 158 ~~~~~dg~i~~ 168 (372)
T 1k8k_C 158 AAGSCDFKCRI 168 (372)
T ss_dssp EEEETTSCEEE
T ss_pred EEEcCCCCEEE
Confidence 89999999875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-18 Score=173.82 Aligned_cols=153 Identities=11% Similarity=0.183 Sum_probs=129.3
Q ss_pred eeEEEEcCC---CCCEEEEEeCCCcEEEEECCCCceEEEEec---cCCCCCEEEEEEeeCC---CCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPS---NPSLMAFGTLDGEVIVINHENGNVACYIPS---IGGTNSVLGLCWLKKY---PSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~---dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~---~gH~~~V~~L~fsp~~---~~~LaSgS~DgtIklW 510 (606)
|.+++|+|. ....+++++.+|.|++||..+++.+..+.. ..|...|.+++|+|.. +.+|++|+.||+|++|
T Consensus 21 v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~ 100 (366)
T 3k26_A 21 LFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 100 (366)
T ss_dssp EEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEE
T ss_pred eEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEE
Confidence 889999983 345677777788999999998777655442 2377899999999953 4589999999999999
Q ss_pred eCCCCCCCcccccCCcceEEee-cCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEE---cCCCCCCeEEEEE
Q 035500 511 DLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLF---TDMHREPINVAKF 585 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l---~~gH~~~I~sV~f 585 (606)
|+.+ ...+..+. |..+|.+++|+| ++.++++|+.||.|++||+++++.+..+ . +|...|++++|
T Consensus 101 d~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~ 169 (366)
T 3k26_A 101 NPIT----------MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 169 (366)
T ss_dssp CTTT----------CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT-SCSSCEEEEEE
T ss_pred Echh----------ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc-cccCceeEEEE
Confidence 9987 34566777 567799999999 8899999999999999999999998888 5 79999999999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|++. .+++|+.|+.|+.
T Consensus 170 ~~~~~-~l~~~~~dg~i~i 187 (366)
T 3k26_A 170 DLLGE-KIMSCGMDHSLKL 187 (366)
T ss_dssp CTTSS-EEEEEETTSCEEE
T ss_pred CCCCC-EEEEecCCCCEEE
Confidence 99988 4889999999875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-18 Score=170.70 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=132.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| +++++++|+.||.|++||+++++....+. +|.+.|.+++|+| ++..+++++.||.|++||++.
T Consensus 144 i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~----- 214 (337)
T 1gxr_A 144 CYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQ--GHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLRE----- 214 (337)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-----
T ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeee--cccCceEEEEECC-CCCEEEEEecCCcEEEEECCC-----
Confidence 78999999 89999999999999999999998877665 8999999999999 668999999999999999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
...+..+.+..++.+++|+|+++++++++.|+.|++||+++++.. .+. +|...|++++|+|++.. +++++.|
T Consensus 215 -----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~-~~~~~v~~~~~~~~~~~-l~~~~~d 286 (337)
T 1gxr_A 215 -----GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH-LHESCVLSLKFAYCGKW-FVSTGKD 286 (337)
T ss_dssp -----TEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC-CCSSCEEEEEECTTSSE-EEEEETT
T ss_pred -----CceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc-CCccceeEEEECCCCCE-EEEecCC
Confidence 345667777888999999999999999999999999999988764 455 69999999999999985 7899999
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
+.|+.
T Consensus 287 g~i~~ 291 (337)
T 1gxr_A 287 NLLNA 291 (337)
T ss_dssp SEEEE
T ss_pred CcEEE
Confidence 99875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-18 Score=170.53 Aligned_cols=150 Identities=10% Similarity=0.148 Sum_probs=131.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| +++++++|+.||.|++||+.+++........+|...|.+++|+| ++..+++++.||.|++||++.
T Consensus 100 v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~----- 172 (337)
T 1gxr_A 100 IRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHN----- 172 (337)
T ss_dssp EEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----
T ss_pred EEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCC-----
Confidence 88999999 89999999999999999999887444444558999999999998 678999999999999999987
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+..+. +...|.+++|+|+++++++++.|+.|++||+++++.+..+. |...+.+++|+|++.. +++++.
T Consensus 173 -----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~-l~~~~~ 244 (337)
T 1gxr_A 173 -----QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW-LAVGME 244 (337)
T ss_dssp -----TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE-EEEEET
T ss_pred -----CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCE-EEEEcC
Confidence 34566666 45669999999999999999999999999999999888876 7889999999999985 788899
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|+.
T Consensus 245 ~~~i~~ 250 (337)
T 1gxr_A 245 SSNVEV 250 (337)
T ss_dssp TSCEEE
T ss_pred CCcEEE
Confidence 998875
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-19 Score=185.79 Aligned_cols=160 Identities=16% Similarity=0.306 Sum_probs=123.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-----------eEEEEeccCCC------------CCEEEEEEeeCCC-
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-----------VACYIPSIGGT------------NSVLGLCWLKKYP- 495 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-----------~v~~~~~~gH~------------~~V~~L~fsp~~~- 495 (606)
|++++|+| ++++||+|+.||.|+|||+.++. ....+ .+|. +.|.+++|+|.+.
T Consensus 31 V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 31 ISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF--QSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE--ECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc--ccccccccccccccccCceEEEEEcCCCCc
Confidence 88999999 99999999999999999998766 34444 4888 8899999999533
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCc------------------cccc-----------CCcceEEe-e-cCCCeEEEEEcc
Q 035500 496 SKLVAGSDSGCVRLFDLNHIPPKV------------------ADAR-----------GNSSVATY-Y-DFEQLTSVHVNS 544 (606)
Q Consensus 496 ~~LaSgS~DgtIklWDl~~~~~~~------------------~~l~-----------~~~~i~t~-~-~~~~V~sV~~sp 544 (606)
..+++|+.||+|++||+....... ..+. ...+...+ . |...|.+++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 689999999999999987522100 0000 00111233 2 456799999999
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CceeEE-------EcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 545 TDDQFLASGYSKNVALYDINT-EKPLQL-------FTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 545 ~g~~LaSgs~Dg~I~IWDlrt-~k~v~~-------l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+++++++| .|+.|++||+++ ++.+.. +. +|...|++++|+|++..++++|+.|++|++
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANME-ELTEVITAAEFHPNSCNTFVYSSSKGTIRL 253 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGG-GCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccc-ccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence 99999998 799999999994 444443 34 699999999999998557999999999985
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-18 Score=174.88 Aligned_cols=154 Identities=8% Similarity=0.006 Sum_probs=132.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| +++++++|+.||.|++||+++++........+|...|.+++|+| ++.++++|+.||.|++||++....
T Consensus 55 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~-- 130 (372)
T 1k8k_C 55 VTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQEND-- 130 (372)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTT--
T ss_pred ccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCc--
Confidence 88999999 99999999999999999999888776666678999999999998 578999999999999999987421
Q ss_pred ccccCCcceEEe-e-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECC------------------CCceeEEEcCCCCCC
Q 035500 520 ADARGNSSVATY-Y-DFEQLTSVHVNSTDDQFLASGYSKNVALYDIN------------------TEKPLQLFTDMHREP 579 (606)
Q Consensus 520 ~~l~~~~~i~t~-~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr------------------t~k~v~~l~~gH~~~ 579 (606)
......+ . +...|.+++|+|+++++++++.|+.|++||++ .++.+..+. +|...
T Consensus 131 -----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (372)
T 1k8k_C 131 -----WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGW 204 (372)
T ss_dssp -----EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSC
T ss_pred -----ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCe
Confidence 0112233 2 35679999999999999999999999999954 677888888 79999
Q ss_pred eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++++|+|++. .+++++.|+.|++
T Consensus 205 v~~~~~~~~~~-~l~~~~~d~~i~i 228 (372)
T 1k8k_C 205 VHGVCFSANGS-RVAWVSHDSTVCL 228 (372)
T ss_dssp EEEEEECSSSS-EEEEEETTTEEEE
T ss_pred EEEEEECCCCC-EEEEEeCCCEEEE
Confidence 99999999998 5889999999875
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-18 Score=187.34 Aligned_cols=146 Identities=18% Similarity=0.253 Sum_probs=128.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||.|++||.. ++....+. +|...|++++|+| ++.+|++++.|++|++||...
T Consensus 388 v~~~~~s~-dg~~l~~~~~d~~v~~~~~~-~~~~~~~~--~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~----- 457 (577)
T 2ymu_A 388 VRGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLT--GHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNG----- 457 (577)
T ss_dssp EEEEEECT-TSSCEEEEETTSEEEEECTT-CCEEEEEE--CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTS-----
T ss_pred eEEEEECC-CCCEEEEEeCCCEEEEEeCC-CCEEEEec--CCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCC-----
Confidence 88999999 99999999999999999964 56665554 8999999999999 668999999999999999754
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..+. |...|.+++|+|+++++++++.|++|++||. +++.++.+. +|...|++++|+|++.+ +++|+.
T Consensus 458 ------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~-~h~~~v~~l~~s~dg~~-l~s~~~ 528 (577)
T 2ymu_A 458 ------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQT-IASASD 528 (577)
T ss_dssp ------CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE-CCSSCEEEEEECTTSSC-EEEEET
T ss_pred ------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe-CCCCCEEEEEEcCCCCE-EEEEEC
Confidence 2455555 4567999999999999999999999999995 688889998 89999999999999985 789999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++||.
T Consensus 529 dg~v~l 534 (577)
T 2ymu_A 529 DKTVKL 534 (577)
T ss_dssp TSEEEE
T ss_pred cCEEEE
Confidence 999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-18 Score=181.53 Aligned_cols=150 Identities=11% Similarity=0.120 Sum_probs=132.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE--CCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS--DSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS--~DgtIklWDl~~~~~ 517 (606)
|.+++|+| ++.++++|+.||.|++||+.+++....+. +|...|.+++|+|.+...+++|+ .|+.|++||+++
T Consensus 220 v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~--- 293 (401)
T 4aez_A 220 VCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKT--NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT--- 293 (401)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEEC--CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT---
T ss_pred eeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEec--CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC---
Confidence 88999999 99999999999999999999988877654 89999999999997778888876 899999999998
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeE--EEcCCCCCCeEEEEEeCCCCeEE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQ--LFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~--~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
..++..+.++.+|.+++|+|++..+++++ .||.|++||+++++... .+. +|...|++++|+|++.+ +
T Consensus 294 -------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~-l 364 (401)
T 4aez_A 294 -------GARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDGRI-L 364 (401)
T ss_dssp -------CCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTTSSE-E
T ss_pred -------CCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-CCCCCEEEEEECCCCCE-E
Confidence 45677888888999999999999999854 89999999999876544 456 79999999999999985 8
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++|+.|+.|+.
T Consensus 365 ~s~~~dg~i~i 375 (401)
T 4aez_A 365 STAASDENLKF 375 (401)
T ss_dssp EEECTTSEEEE
T ss_pred EEEeCCCcEEE
Confidence 89999999975
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-18 Score=176.88 Aligned_cols=150 Identities=16% Similarity=0.191 Sum_probs=127.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+|.+++++++|+.||+|++||+++..........+|...|.+++|+| ++..|++|+.||+|++||++.
T Consensus 121 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~----- 194 (383)
T 3ei3_B 121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLDG----- 194 (383)
T ss_dssp EEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETTS-----
T ss_pred eeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECCC-----
Confidence 88999999778999999999999999999644443333345668899999999 678999999999999999953
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCC----CceeEEEcCCCCCCeEEEEEeC-CCCeE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYSKNVALYDINT----EKPLQLFTDMHREPINVAKFSH-HSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt----~k~v~~l~~gH~~~I~sV~fsP-~g~~L 592 (606)
.++..+. |...|.+++|+|+++ ++++|+.|++|++||+++ +..+..+ +|...|++++|+| ++. .
T Consensus 195 ------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~-~ 265 (383)
T 3ei3_B 195 ------HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDST-K 265 (383)
T ss_dssp ------CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSC-E
T ss_pred ------CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCC-E
Confidence 3566666 456799999999998 999999999999999998 5566666 4899999999999 877 5
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++++.|+.|++
T Consensus 266 l~~~~~d~~i~i 277 (383)
T 3ei3_B 266 LLTTDQRNEIRV 277 (383)
T ss_dssp EEEEESSSEEEE
T ss_pred EEEEcCCCcEEE
Confidence 889999999885
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-18 Score=195.14 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=134.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++.++|+|+.||.|+|||+.+++....+. +|.+.|.+++|+| ++.+|++|+.||+|++||+.++
T Consensus 16 v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~---- 87 (814)
T 3mkq_A 16 VKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQ--VTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTG---- 87 (814)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTC----
T ss_pred eEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEe--cCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC----
Confidence 88999999 99999999999999999999999888766 8999999999999 6789999999999999999883
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..+..+. |...|.+++|+|+++++++++.||+|++||++++ .....+. +|...|.+++|+|.+...+++|+
T Consensus 88 ------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 88 ------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEEEEEEEEE
T ss_pred ------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEe
Confidence 4566666 4567999999999999999999999999999987 5567777 79999999999995445799999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|+.
T Consensus 161 ~dg~v~v 167 (814)
T 3mkq_A 161 LDRTVKV 167 (814)
T ss_dssp TTSEEEE
T ss_pred CCCeEEE
Confidence 9999875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=181.59 Aligned_cols=150 Identities=11% Similarity=0.155 Sum_probs=125.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+....|+| +++++|+|+.||.|++||+++++....+ .+|.+.|.+++|+| ++.+|++|+.||+|++||+...
T Consensus 100 ~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~---- 171 (420)
T 3vl1_A 100 TAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREID--QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDG---- 171 (420)
T ss_dssp EEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEET--TSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC----
T ss_pred eEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeec--ccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCC----
Confidence 34446788 9999999999999999999988876644 49999999999999 5789999999999999999873
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC--CCCCCeEEEEE-----------
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD--MHREPINVAKF----------- 585 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~--gH~~~I~sV~f----------- 585 (606)
..+..+. |...|.+++|+|+++++++++.|++|++||+++++.+..+.. .|...|.+++|
T Consensus 172 ------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 245 (420)
T 3vl1_A 172 ------SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245 (420)
T ss_dssp ------CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred ------cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence 3556666 456799999999999999999999999999999999888872 24455555555
Q ss_pred ----------eCCCCeEEEEEeCCCeEEE
Q 035500 586 ----------SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 ----------sP~g~~LLaTgS~DgtIRc 604 (606)
+|++. .+++|+.|+.|+.
T Consensus 246 ~~~~v~~~~~s~~~~-~l~~~~~dg~i~i 273 (420)
T 3vl1_A 246 STSKKNNLEFGTYGK-YVIAGHVSGVITV 273 (420)
T ss_dssp CCCCCCTTCSSCTTE-EEEEEETTSCEEE
T ss_pred ccCcccceEEcCCCC-EEEEEcCCCeEEE
Confidence 67776 5889999999875
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-18 Score=192.65 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce---EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV---ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~---v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+|.++++|+||+.||+|++||+.++.. .....+.+|...|.+++|+| ++.+|+|||.||+|++||+..
T Consensus 385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~-- 461 (694)
T 3dm0_A 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAA-- 461 (694)
T ss_dssp EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT--
T ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCC--
Confidence 889999997778999999999999999876321 11223459999999999998 678999999999999999987
Q ss_pred CCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc--CCCCCCeEEEEEeCCCC-eE
Q 035500 517 PKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT--DMHREPINVAKFSHHSP-LC 592 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~--~gH~~~I~sV~fsP~g~-~L 592 (606)
...+..+.+ ...|.+++|+|++++++|||.|++|++||........... .+|...|++++|+|++. ..
T Consensus 462 --------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 462 --------GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp --------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred --------CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 345666664 5669999999999999999999999999987654433322 36899999999999873 47
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|++||+
T Consensus 534 l~s~s~d~~v~v 545 (694)
T 3dm0_A 534 IVSASWDKTVKV 545 (694)
T ss_dssp EEEEETTSCEEE
T ss_pred EEEEeCCCeEEE
Confidence 899999999985
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-18 Score=173.47 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=126.1
Q ss_pred eeEEE----EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC--CCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFE----YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK--YPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~sla----fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~--~~~~LaSgS~DgtIklWDl~ 513 (606)
+.+++ |+| +++++++|+.||.|++||+++++.... ..|...|.+++|+|. ++..+++|+.||.|++||++
T Consensus 167 v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 167 CWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWE---TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp EEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred eEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeee---cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 67777 677 899999999999999999999887543 378899999999984 56899999999999999998
Q ss_pred CCCCCcccccCCcceEEe-ecCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCC-------------------ceeEEE
Q 035500 514 HIPPKVADARGNSSVATY-YDFEQLTSVHVNSTDD-QFLASGYSKNVALYDINTE-------------------KPLQLF 572 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~-~~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~-------------------k~v~~l 572 (606)
...... ......+ .+...|.+++|+|++. ++++|+.||.|++||++++ +.+..+
T Consensus 243 ~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 243 TQHPTK-----GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEETTT-----EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred CCCccc-----ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 732100 0011122 3556799999999998 8999999999999999864 346677
Q ss_pred cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 573 TDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
. +|...|++++|+|++..++++|+.|+.|+.
T Consensus 318 ~-~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 318 T-LSTQPISSLDWSPDKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp E-CCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred c-cCCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence 7 799999999999999986669999999985
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-18 Score=180.69 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=125.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC---CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC---
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN---GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN--- 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t---g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~--- 513 (606)
|++++|+|.++.++|+|+.||+|+|||+.+ +.........+|.+.|.+++|+| ++..|++|+.||+|++||+.
T Consensus 66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~ 144 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQ 144 (437)
T ss_dssp EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEE
T ss_pred eEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEecccc
Confidence 889999997788999999999999999876 43221111126899999999998 67899999999999999995
Q ss_pred CCCCCcccccCCcceEEee-----cCCCeEEEE--EccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC--CCCCeEEEE
Q 035500 514 HIPPKVADARGNSSVATYY-----DFEQLTSVH--VNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM--HREPINVAK 584 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-----~~~~V~sV~--~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g--H~~~I~sV~ 584 (606)
.+.. ..... ..++..+. +...+.++. +++++.++++|+.|+.|++||+++++.+..+. + |...|++++
T Consensus 145 ~~~~-~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~~~ 221 (437)
T 3gre_A 145 QESE-VKFLN-CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE-NSPRHGAVSSIC 221 (437)
T ss_dssp ETTE-EEEEE-EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE-CCGGGCCEEEEE
T ss_pred CCce-eeccc-cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc-cCCCCCceEEEE
Confidence 2111 00000 11233332 344577777 56788999999999999999999999999998 5 899999999
Q ss_pred EeCCCCeEEEEEeCCCeEEE
Q 035500 585 FSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 585 fsP~g~~LLaTgS~DgtIRc 604 (606)
|+|++. .+++|+.|++|++
T Consensus 222 ~s~~~~-~l~s~~~dg~i~i 240 (437)
T 3gre_A 222 IDEECC-VLILGTTRGIIDI 240 (437)
T ss_dssp ECTTSC-EEEEEETTSCEEE
T ss_pred ECCCCC-EEEEEcCCCeEEE
Confidence 999987 5899999999985
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.4e-18 Score=177.43 Aligned_cols=154 Identities=12% Similarity=0.128 Sum_probs=131.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+|...+++++|+.||+|++||+++++....+...+|.+.|.+++|+| ++.+|++|+.||.|++||++.
T Consensus 134 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~----- 207 (402)
T 2aq5_A 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRK----- 207 (402)
T ss_dssp EEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTT-----
T ss_pred EEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCC-----
Confidence 88999999334799999999999999999998887663248999999999999 678999999999999999998
Q ss_pred ccccCCcceEEe-ecC-CC-eEEEEEccCCCEEEEE---eCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATY-YDF-EQ-LTSVHVNSTDDQFLAS---GYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~-~~~-~~-V~sV~~sp~g~~LaSg---s~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
...+..+ ..+ .. +.++.|+|++.++++| +.|+.|++||+++++. +......|...|.+++|+|++..+
T Consensus 208 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 208 -----GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp -----TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred -----CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE
Confidence 3456666 333 33 8999999999999999 7899999999998754 555554578899999999999987
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|+.|++
T Consensus 283 ~~~g~~dg~i~i 294 (402)
T 2aq5_A 283 YLCGKGDSSIRY 294 (402)
T ss_dssp EEEETTCSCEEE
T ss_pred EEEEcCCCeEEE
Confidence 788889999885
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-18 Score=175.48 Aligned_cols=148 Identities=16% Similarity=0.232 Sum_probs=131.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| ++.++++|+.||.|++||+.+++....+. +|...|.+++|+|+ + .+++++.||.|++||++.
T Consensus 250 i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~-~-~l~~~~~d~~i~i~d~~~----- 319 (425)
T 1r5m_A 250 ISVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFY--GHSQSIVSASWVGD-D-KVISCSMDGSVRLWSLKQ----- 319 (425)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEECSSSBSCSEEEC--CCSSCEEEEEEETT-T-EEEEEETTSEEEEEETTT-----
T ss_pred eEEEEECC-CCCEEEEEcCCCEEEEEECCCCccceEec--CCCccEEEEEECCC-C-EEEEEeCCCcEEEEECCC-----
Confidence 78999999 88999999999999999999888777664 89999999999994 4 999999999999999987
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--------------------eeEEEcCCCCC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK--------------------PLQLFTDMHRE 578 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k--------------------~v~~l~~gH~~ 578 (606)
...+..+.. ..+|.+++|+|+++++++++.||.|++||+++++ .+..+. +|..
T Consensus 320 -----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 393 (425)
T 1r5m_A 320 -----NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQD 393 (425)
T ss_dssp -----TEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-CTTC
T ss_pred -----CcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-Cccc
Confidence 345666664 5679999999999999999999999999999888 888888 6866
Q ss_pred --CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 579 --PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 579 --~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|++++|+|++.+ +++|+.|+.|++
T Consensus 394 ~~~v~~~~~s~~~~~-l~~~~~dg~i~i 420 (425)
T 1r5m_A 394 NDYIFDLSWNCAGNK-ISVAYSLQEGSV 420 (425)
T ss_dssp CCCEEEEEECTTSSE-EEEEESSSCCEE
T ss_pred CCceEEEEccCCCce-EEEEecCceEEE
Confidence 9999999999984 789999998875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=200.39 Aligned_cols=149 Identities=18% Similarity=0.171 Sum_probs=135.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| +++++|+|+.||+|+|||..+++.+..+. +|.+.|.+++|+| ++.++++|+.||+|++||+.+
T Consensus 618 v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~----- 688 (1249)
T 3sfz_A 618 VYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIK--AHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSAT----- 688 (1249)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-----
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEec--cCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCC-----
Confidence 88999999 99999999999999999999999887665 9999999999999 678999999999999999998
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNST--DDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...+.++.. ..+|.+++|+|+ +.++++|+.|+.|++||+++++.+..+. +|.+.|++++|+|++. .+++|
T Consensus 689 -----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~-~l~s~ 761 (1249)
T 3sfz_A 689 -----GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDE-LLASC 761 (1249)
T ss_dssp -----CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-CCSSCEEEEEECSSTT-EEEEE
T ss_pred -----CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec-CCCCCEEEEEEecCCC-EEEEE
Confidence 346677765 466999999995 4599999999999999999999999998 7999999999999998 58899
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|++|+.
T Consensus 762 s~dg~v~v 769 (1249)
T 3sfz_A 762 SADGTLRL 769 (1249)
T ss_dssp ESSSEEEE
T ss_pred ECCCeEEE
Confidence 99999985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-18 Score=191.02 Aligned_cols=152 Identities=9% Similarity=0.052 Sum_probs=124.4
Q ss_pred eeEEEEcCC-----CCCEEEEEeCCCcEEEEECCCCceE---------EEEeccCCCCCEEEEEEeeCCCCEEEEEECCC
Q 035500 440 PRQFEYNPS-----NPSLMAFGTLDGEVIVINHENGNVA---------CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG 505 (606)
Q Consensus 440 V~slafsP~-----dg~~LaSGs~DGtVrIWDi~tg~~v---------~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg 505 (606)
|.+++|+|. ++.+||+|+.||+|+|||+.++... ....+.+|...|++++|++. ..|++|+.||
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~Dg 287 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNG 287 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTS
T ss_pred EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCC
Confidence 789999993 3679999999999999999876421 11234589999999999973 5899999999
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEE--EEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCC--C
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSV--HVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHRE--P 579 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV--~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~--~ 579 (606)
+|++||++.+ ..+...+. |...|.+| +|+|++ .+|+|||.|++|++||+++++.+..+. +|.. .
T Consensus 288 tV~lWD~~~~---------~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~~~~~ 357 (524)
T 2j04_B 288 FVAEFDLTDP---------EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRFRGSN 357 (524)
T ss_dssp EEEEEETTBC---------SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EECSCCS
T ss_pred EEEEEECCCC---------CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cccccCc
Confidence 9999999863 23455565 45679999 567887 899999999999999999988877776 5653 5
Q ss_pred eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++++|+|++.. +++++.|++||+
T Consensus 358 v~~v~fsp~~~~-l~s~~~d~tv~l 381 (524)
T 2j04_B 358 LVPVVYCPQIYS-YIYSDGASSLRA 381 (524)
T ss_dssp CCCEEEETTTTE-EEEECSSSEEEE
T ss_pred ccceEeCCCcCe-EEEeCCCCcEEE
Confidence 899999999885 889999999885
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.5e-18 Score=177.30 Aligned_cols=148 Identities=13% Similarity=0.019 Sum_probs=112.2
Q ss_pred eeEEEEcC--CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCC---CCCEEEEEEeeCCCCEE------------EEEE
Q 035500 440 PRQFEYNP--SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGG---TNSVLGLCWLKKYPSKL------------VAGS 502 (606)
Q Consensus 440 V~slafsP--~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH---~~~V~~L~fsp~~~~~L------------aSgS 502 (606)
++.++|+| .++.++|+|+.|++|+|||+++|+.+.++. +| ...+.+++|+| ++.++ +||+
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~--g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH--IDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE--CCC---CCCEEEEEEE-TTEEEEEEC------------
T ss_pred eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc--CCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccC
Confidence 55666776 466899999999999999999999998876 43 34688889999 45554 6789
Q ss_pred CCCeEEEEeCCCCCCCcccccCCcceEEe-----ecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC
Q 035500 503 DSGCVRLFDLNHIPPKVADARGNSSVATY-----YDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMH 576 (606)
Q Consensus 503 ~DgtIklWDl~~~~~~~~~l~~~~~i~t~-----~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH 576 (606)
.|++|++||..++ ..+.++ .++ ..+.+.++ ++.++++|+.|++|+|||+++++.+.++. +|
T Consensus 258 ~D~tIklWd~~tg----------k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~-gH 324 (356)
T 2w18_A 258 PVFQLIVINPKTT----------LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLP-PV 324 (356)
T ss_dssp CCEEEEEEETTTT----------EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEEC-CC
T ss_pred CCcEEEEEECCCC----------EEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEec-CC
Confidence 9999999999874 333333 122 23444444 37899999999999999999999999998 78
Q ss_pred CCCeE-EEEEeCCCCeEEEEEeCCCeEEE
Q 035500 577 REPIN-VAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 577 ~~~I~-sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
...+. +++|+|+|++ +++||.|++||.
T Consensus 325 ~~~vvs~vafSPDG~~-LaSGS~D~TIkl 352 (356)
T 2w18_A 325 SDQHWSFVKWSGTDSH-LLAGQKDGNIFV 352 (356)
T ss_dssp --CCCCEEEECSSSSE-EEEECTTSCEEE
T ss_pred CCCeEEEEEECCCCCE-EEEEECCCcEEE
Confidence 77655 6899999985 889999999985
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-18 Score=179.12 Aligned_cols=154 Identities=12% Similarity=0.150 Sum_probs=126.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEE-----eccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYI-----PSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~-----~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
|.+++|+| +++++++| .||+|++||+++ +.....+ ...+|...|.+++|+|+++.+|++|+.||+|++||++
T Consensus 180 v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 180 INSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp CCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred eEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 88999999 89999999 799999999984 4444332 3558999999999999555899999999999999999
Q ss_pred CCCCCcccccCCcceEEeecCC-------------CeEEEEEccCCCEEEEEeCCCcEEEEECCC-CceeEEEcCCCCCC
Q 035500 514 HIPPKVADARGNSSVATYYDFE-------------QLTSVHVNSTDDQFLASGYSKNVALYDINT-EKPLQLFTDMHREP 579 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~-------------~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt-~k~v~~l~~gH~~~ 579 (606)
..... ...+..+..+. .|.+++|+|++.++++++. +.|++||+++ ++++..+. +|...
T Consensus 258 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~ 329 (447)
T 3dw8_B 258 ASALC------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ-VHEYL 329 (447)
T ss_dssp TCSSS------CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE-SCGGG
T ss_pred CCccc------cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee-ccccc
Confidence 84321 11245666543 7999999999999999999 9999999997 88888888 67532
Q ss_pred ---------------eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 580 ---------------INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 ---------------I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+..++|+|++.+ +++|+.|+.|+.
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~dg~v~i 368 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYNNFFRM 368 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECSTTEEEE
T ss_pred cccccccccccccccceEEEECCCCCE-EEEeccCCEEEE
Confidence 334999999996 699999999985
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-18 Score=178.38 Aligned_cols=160 Identities=13% Similarity=0.189 Sum_probs=130.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC----CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN----GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t----g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
|.+++|+| ++.++++|+.||.|++||+.+ .+.... +.+|.+.|.+++|+|+++.++++|+.||+|++||+...
T Consensus 70 v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 146 (416)
T 2pm9_A 70 FNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMAR--FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146 (416)
T ss_dssp EEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEE--CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred eEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhh--ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence 88999999 899999999999999999987 234443 44899999999999965789999999999999999885
Q ss_pred CCCcccccCCcceEE-eecCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCceeEEEcCCC------CCCeEEEEEeC
Q 035500 516 PPKVADARGNSSVAT-YYDFEQLTSVHVNST-DDQFLASGYSKNVALYDINTEKPLQLFTDMH------REPINVAKFSH 587 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t-~~~~~~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH------~~~I~sV~fsP 587 (606)
........ ...... ..+...|.+++|+|+ +.++++++.|+.|++||+++++.+..+. .| ...|++++|+|
T Consensus 147 ~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 147 TESPSNYT-PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS-YTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp SSCTTTCC-CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC-CCCCSSCCCCCEEEEEECS
T ss_pred cccccccc-ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe-ccccccccCCceEEEEECC
Confidence 31100000 001111 234567999999999 6899999999999999999999988888 45 78999999999
Q ss_pred CCCeEEEEEeCCC---eEEE
Q 035500 588 HSPLCLLLLHLTT---MSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~Dg---tIRc 604 (606)
++..++++++.|+ .|+.
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~ 244 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILI 244 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCE
T ss_pred CCCCEEEEEECCCCCceEEE
Confidence 9877899999998 7654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=179.98 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=132.0
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECC--CCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHE--NGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~--tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+| ++++| |+|+.||+|+|||+. +++....+...+|...|.+++|+| ++.+|++|+.||.|++|++....
T Consensus 105 v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 105 IRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp EEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCC
T ss_pred eEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecCCcc
Confidence 88999999 88885 899999999999999 888887776557889999999999 67899999999999999998753
Q ss_pred CCcccccCCcceEEee-cCCCeEEEEEccC---CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 517 PKVADARGNSSVATYY-DFEQLTSVHVNST---DDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~---g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.. ..+...+. |...|.+++|+|+ +.++++|+.|++|++||+++++.+..+..+|...|++++|+ ++. +
T Consensus 183 ~~------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~-~ 254 (450)
T 2vdu_B 183 EE------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY-L 254 (450)
T ss_dssp CS------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT-E
T ss_pred cc------cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC-E
Confidence 21 00222344 4567999999999 88999999999999999999998887555899999999999 777 5
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|++|+.
T Consensus 255 l~s~~~d~~v~v 266 (450)
T 2vdu_B 255 LLSAGGDDKIFA 266 (450)
T ss_dssp EEEEESSSEEEE
T ss_pred EEEEeCCCeEEE
Confidence 889999999985
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.77 E-value=8.8e-18 Score=174.96 Aligned_cols=150 Identities=10% Similarity=0.102 Sum_probs=129.8
Q ss_pred eeEEEEc----CCCCCE-EEEEeCCCcEEEEECCC------CceEE-----EEec-----cCCCCCEEEEEEeeCCCCEE
Q 035500 440 PRQFEYN----PSNPSL-MAFGTLDGEVIVINHEN------GNVAC-----YIPS-----IGGTNSVLGLCWLKKYPSKL 498 (606)
Q Consensus 440 V~slafs----P~dg~~-LaSGs~DGtVrIWDi~t------g~~v~-----~~~~-----~gH~~~V~~L~fsp~~~~~L 498 (606)
|.+++|+ | ++++ +++|+.||.|++||+.+ ++.+. .+.. ..|...|.+++|+| ++ .+
T Consensus 124 v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l 200 (397)
T 1sq9_A 124 FWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LI 200 (397)
T ss_dssp EEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EE
T ss_pred EEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eE
Confidence 8899999 8 8889 99999999999999987 55554 4432 46889999999999 45 99
Q ss_pred EEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-------CCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCce
Q 035500 499 VAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD-------FEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKP 568 (606)
Q Consensus 499 aSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~-------~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~ 568 (606)
++|+.||.|++||++. ..++..+.. ..+|.+++|+|++.++++++.| +.|++||+++++.
T Consensus 201 ~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 201 ATGFNNGTVQISELST----------LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp EEECTTSEEEEEETTT----------TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred EEEeCCCcEEEEECCC----------CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 9999999999999997 356667765 6679999999999999999999 9999999999999
Q ss_pred eEEEcCC-------------CCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 569 LQLFTDM-------------HREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 569 v~~l~~g-------------H~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+..+. + |...|++++|+|++.+ +++|+.|+.|++
T Consensus 271 ~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i 317 (397)
T 1sq9_A 271 IGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRF 317 (397)
T ss_dssp EEEEC-BC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEE
T ss_pred cceec-cCcccccccccccccCCcEEEEEECCCCCE-EEEEeCCCeEEE
Confidence 99998 6 9999999999999985 889999999875
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-18 Score=179.66 Aligned_cols=152 Identities=11% Similarity=0.141 Sum_probs=126.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC---CCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK---YPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~---~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+| +++++++|+.||+|++||+++++.+..+.. +|...|.+++|+|. ++.++++|+.||+|++||++.+.
T Consensus 217 v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 217 VSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSF-GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp EEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBC-TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred eEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEec-CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 88999999 899999999999999999999988876653 67789999988763 45589999999999999998742
Q ss_pred CCcccccCCcceEEee---------------------------cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee
Q 035500 517 PKVADARGNSSVATYY---------------------------DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPL 569 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~---------------------------~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v 569 (606)
++..+. +...|.+++|+ +++++++|+.|+.|++||+++++..
T Consensus 295 ----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 295 ----------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp ----------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred ----------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 222222 33458999999 7789999999999999999999887
Q ss_pred EEEcC------------------------------------CCCCCeEEEEEeCC-CCeEEEEEeCCCeEEE
Q 035500 570 QLFTD------------------------------------MHREPINVAKFSHH-SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 570 ~~l~~------------------------------------gH~~~I~sV~fsP~-g~~LLaTgS~DgtIRc 604 (606)
..+.. .|.+.|++++|+++ +..++++|+.||+|++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~i 435 (437)
T 3gre_A 364 KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGI 435 (437)
T ss_dssp EEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEE
T ss_pred eEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEE
Confidence 77762 18999999999998 3458999999999986
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=173.30 Aligned_cols=151 Identities=7% Similarity=0.026 Sum_probs=118.3
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| .+++++++|+.||+|++||+++++...... ..|...|.+++|+| ++.++++|+.||+|++||++++.
T Consensus 128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~-- 203 (343)
T 3lrv_A 128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-AKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPD-- 203 (343)
T ss_dssp EEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC-CCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTT--
T ss_pred EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-cCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCC--
Confidence 88999999 367899999999999999999988865443 25666899999999 67899999999999999999842
Q ss_pred cccccCCcce-EEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC--CCCCCeE--EEEEeCCCCe
Q 035500 519 VADARGNSSV-ATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD--MHREPIN--VAKFSHHSPL 591 (606)
Q Consensus 519 ~~~l~~~~~i-~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~--gH~~~I~--sV~fsP~g~~ 591 (606)
.+ ..+. |..+|++++|+|++.+++++++ ++|++||+++++.+..+.. .|...+. +++|+|++.+
T Consensus 204 --------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 204 --------QASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp --------SCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred --------CCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 23 4455 4577999999999999999995 4999999999877554441 1334444 6999999996
Q ss_pred EEEEEeC-CCeEEE
Q 035500 592 CLLLLHL-TTMSRC 604 (606)
Q Consensus 592 LLaTgS~-DgtIRc 604 (606)
+++++. |+.|++
T Consensus 275 -l~~~s~~d~~i~v 287 (343)
T 3lrv_A 275 -MIAYSNESNSLTI 287 (343)
T ss_dssp -EEEEETTTTEEEE
T ss_pred -EEEecCCCCcEEE
Confidence 566666 888875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-17 Score=162.59 Aligned_cols=146 Identities=12% Similarity=0.133 Sum_probs=125.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+|.+++++++|+.||.|++|| .++....+. ..|...|.+++|+|.+ . +++|+.||.|++||++.
T Consensus 145 v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~-~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~----- 214 (313)
T 3odt_A 145 VWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFS-GIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHT----- 214 (313)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEEC-SSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTT-----
T ss_pred eeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEe-ccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCc-----
Confidence 778899987899999999999999999 345544443 1389999999999953 3 99999999999999988
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++..+. +..+|.+++|+|++ .+++++.||.|++||+++++.+..+. .|...|++++|+|++. +++++.
T Consensus 215 -----~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~--~~~~~~ 285 (313)
T 3odt_A 215 -----GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNGD--IIVGSS 285 (313)
T ss_dssp -----CCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTSC--EEEEET
T ss_pred -----hhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-ccCceEEEEEEccCCC--EEEEeC
Confidence 34667777 45679999999999 68999999999999999999999998 7999999999999997 557899
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|++
T Consensus 286 dg~i~i 291 (313)
T 3odt_A 286 DNLVRI 291 (313)
T ss_dssp TSCEEE
T ss_pred CCcEEE
Confidence 999885
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-17 Score=168.04 Aligned_cols=161 Identities=14% Similarity=0.233 Sum_probs=127.4
Q ss_pred eeEEEEcCC--CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPS--NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~--dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
+.+++|+|. ++.++++|+.||.|++||+.+++....+. +|.+.|.+++|+|++...+++|+.||.|++||++....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~ 221 (408)
T 4a11_B 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221 (408)
T ss_dssp EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC--CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC
T ss_pred eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec--CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc
Confidence 677889883 44499999999999999999988877655 89999999999996555799999999999999987532
Q ss_pred CcccccC------CcceEE-eecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-----------------------
Q 035500 518 KVADARG------NSSVAT-YYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK----------------------- 567 (606)
Q Consensus 518 ~~~~l~~------~~~i~t-~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k----------------------- 567 (606)
....+.. ...... ..+...|.+++|+|+++++++++.||.|++||+++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (408)
T 4a11_B 222 CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC 301 (408)
T ss_dssp CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC
T ss_pred ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEec
Confidence 1111100 000111 1245669999999999999999999999999998653
Q ss_pred ------------------------eeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 568 ------------------------PLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 568 ------------------------~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+..+. +|...|++++|+|++. ++++|+.||.|+.
T Consensus 302 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~s~~~dg~i~i 360 (408)
T 4a11_B 302 GCSSEFVFVPYGSTIAVYTVYSGEQITMLK-GHYKTVDCCVFQSNFQ-ELYSGSRDCNILA 360 (408)
T ss_dssp SSSSCEEEEEETTEEEEEETTTCCEEEEEC-CCSSCEEEEEEETTTT-EEEEEETTSCEEE
T ss_pred CCCceEEEEecCCEEEEEECcCCcceeeec-cCCCeEEEEEEcCCCC-EEEEECCCCeEEE
Confidence 345556 7999999999999998 4889999999975
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-17 Score=168.48 Aligned_cols=157 Identities=10% Similarity=0.161 Sum_probs=131.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||.|++|| .+++....+. +|...|.+++|+| ++.+|++++.||.|++||+.......
T Consensus 111 v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 111 VTCLAWSH-DGNSIVTGVENGELRLWN-KTGALLNVLN--FHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEE-TTSCEEEEEC--CCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEe-CCCCeeeecc--CCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEE
Confidence 88999999 999999999999999999 5567666554 8999999999999 67899999999999999997642210
Q ss_pred c------c---------------c-------------------------cCCcceEEee-cCCCeEEEEEccCCCEEEEE
Q 035500 520 A------D---------------A-------------------------RGNSSVATYY-DFEQLTSVHVNSTDDQFLAS 552 (606)
Q Consensus 520 ~------~---------------l-------------------------~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSg 552 (606)
. . . ....++..+. +..+|.+++|+|++++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 0 0 0 0112333444 45669999999999999999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 553 GYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 553 s~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.|+.|++||+++++.+..+. +|...|.+++|+|++ .+++++.|+.|++
T Consensus 266 ~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~--~l~~~~~d~~i~i 314 (425)
T 1r5m_A 266 SDDGTLRIWHGGNGNSQNCFY-GHSQSIVSASWVGDD--KVISCSMDGSVRL 314 (425)
T ss_dssp ETTSCEEEECSSSBSCSEEEC-CCSSCEEEEEEETTT--EEEEEETTSEEEE
T ss_pred cCCCEEEEEECCCCccceEec-CCCccEEEEEECCCC--EEEEEeCCCcEEE
Confidence 999999999999999999998 799999999999998 6889999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-18 Score=200.86 Aligned_cols=162 Identities=10% Similarity=0.057 Sum_probs=127.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE----EEecc-----CCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC----YIPSI-----GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~----~~~~~-----gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
+.+++|+| +++++|+|+.||+||+||+.++.... ..... +|...|++++|+| ++.+||+|+.||+|++|
T Consensus 438 v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lw 515 (902)
T 2oaj_A 438 KRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLF 515 (902)
T ss_dssp CCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEE
T ss_pred CCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEE
Confidence 56678999 99999999999999999998875321 11112 8999999999999 67899999999999999
Q ss_pred eCCCCCCCcc-------c---------c-------------------cCCcceEEee-cCCCeEEEEEccCCCEEEEEeC
Q 035500 511 DLNHIPPKVA-------D---------A-------------------RGNSSVATYY-DFEQLTSVHVNSTDDQFLASGY 554 (606)
Q Consensus 511 Dl~~~~~~~~-------~---------l-------------------~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~ 554 (606)
|+...+.... . + .+..++.++. |..+|++|+|+|+| ++|+|+.
T Consensus 516 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~ 594 (902)
T 2oaj_A 516 KYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYA 594 (902)
T ss_dssp EEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEET
T ss_pred EecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeC
Confidence 9976421000 0 0 0012456666 55779999999999 9999999
Q ss_pred CCcEEEEECCCCceeEE--Ec---CCCCCCeEEEEEe-----CCC--CeEEEEEeCCCeEEE
Q 035500 555 SKNVALYDINTEKPLQL--FT---DMHREPINVAKFS-----HHS--PLCLLLLHLTTMSRC 604 (606)
Q Consensus 555 Dg~I~IWDlrt~k~v~~--l~---~gH~~~I~sV~fs-----P~g--~~LLaTgS~DgtIRc 604 (606)
|++|++||++++..+.. +. .+|.+.|++++|+ |+| ...+++|+.|++||.
T Consensus 595 D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~ 656 (902)
T 2oaj_A 595 AGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVIT 656 (902)
T ss_dssp TSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEE
T ss_pred CCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEE
Confidence 99999999988776542 21 2799999999999 886 346899999999985
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=196.13 Aligned_cols=146 Identities=16% Similarity=0.211 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++++||+|+.||+|+|||..+++.... ..|...|.+++|+| +.+|+|++.|++|++||+.+
T Consensus 20 V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~---~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~----- 88 (902)
T 2oaj_A 20 PIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIK---LEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYS----- 88 (902)
T ss_dssp EEEEEEET-TTTEEEEEETTSEEEEECSTTCEEEEE---CSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTT-----
T ss_pred cEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEE---cCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCC-----
Confidence 88999999 999999999999999999987766543 26888999999998 45999999999999999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee-----------EEEcCCCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPL-----------QLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v-----------~~l~~gH~~~I~sV~fsP~ 588 (606)
...+.++.++..|++++|+|+++++++|+.||+|++||+++++.. ..+. +|.+.|++++|+|+
T Consensus 89 -----~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~-~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 89 -----QKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA-ARLSPIVSIQWNPR 162 (902)
T ss_dssp -----CSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS-SCCCCCCEEEEETT
T ss_pred -----CcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc-cCCCCeEEEEEccC
Confidence 346777777888999999999999999999999999999988753 1223 69999999999998
Q ss_pred CCeEEEEEeCCCeE
Q 035500 589 SPLCLLLLHLTTMS 602 (606)
Q Consensus 589 g~~LLaTgS~DgtI 602 (606)
+..++++|+.|++|
T Consensus 163 ~~~~l~~g~~dg~v 176 (902)
T 2oaj_A 163 DIGTVLISYEYVTL 176 (902)
T ss_dssp EEEEEEEECSSCEE
T ss_pred CCCEEEEEeCCCcE
Confidence 76678999999987
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=168.69 Aligned_cols=153 Identities=14% Similarity=0.212 Sum_probs=124.5
Q ss_pred eeEEE------EcCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEec-cCC-CCCEEEEE----EeeCCCCEEEEEECCCe
Q 035500 440 PRQFE------YNPSNPSLMAFGTLDGEVIVINHENGN-VACYIPS-IGG-TNSVLGLC----WLKKYPSKLVAGSDSGC 506 (606)
Q Consensus 440 V~sla------fsP~dg~~LaSGs~DGtVrIWDi~tg~-~v~~~~~-~gH-~~~V~~L~----fsp~~~~~LaSgS~Dgt 506 (606)
|.+++ |+| +++++++|+.||.|++||+.++. ....+.. .+| ...|.+++ |+| ++..+++|+.||.
T Consensus 114 v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~ 191 (357)
T 3i2n_A 114 INAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGD 191 (357)
T ss_dssp EEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSE
T ss_pred eEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCe
Confidence 66775 467 88999999999999999999876 5555442 121 34899999 556 6789999999999
Q ss_pred EEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEcc---CCCEEEEEeCCCcEEEEECCCCceeEEEc----CCCCCC
Q 035500 507 VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS---TDDQFLASGYSKNVALYDINTEKPLQLFT----DMHREP 579 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp---~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~----~gH~~~ 579 (606)
|++||++.. .......+...|.+++|+| +++++++|+.||.|++||+++++....+. .+|...
T Consensus 192 i~i~d~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 261 (357)
T 3i2n_A 192 IKLFDLRNM----------ALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKST 261 (357)
T ss_dssp EEEEETTTT----------EEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSC
T ss_pred EEEEECccC----------ceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCC
Confidence 999999983 3455566778899999999 89999999999999999999876654433 169999
Q ss_pred eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++++|+|++..++++|+.|+.|+.
T Consensus 262 v~~~~~~~~~~~~l~~~~~dg~i~i 286 (357)
T 3i2n_A 262 VWQVRHLPQNRELFLTAGGAGGLHL 286 (357)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEE
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEE
Confidence 9999999999878999999999875
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-17 Score=188.15 Aligned_cols=156 Identities=15% Similarity=0.171 Sum_probs=130.3
Q ss_pred eeEEEEcCCC--CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSN--PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~d--g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+| + ++++++|+.||+|++||+.+++........+|.+.|.+++|+|+. +..+++|+.||+|++||++...
T Consensus 56 V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 56 VWRVDWAH-PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp EEEEEECC-TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred eEEEEecC-CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 88999998 5 899999999999999999988744444556899999999999953 7899999999999999998842
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEcc-------------CCCEEEEEeCCCcEEEEECCCC----ceeEEEcCCCCCC
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNS-------------TDDQFLASGYSKNVALYDINTE----KPLQLFTDMHREP 579 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp-------------~g~~LaSgs~Dg~I~IWDlrt~----k~v~~l~~gH~~~ 579 (606)
. ........+...|.+++|+| ++..+++|+.||+|++||++++ .....+. +|...
T Consensus 135 ~-------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~ 206 (753)
T 3jro_A 135 T-------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDW 206 (753)
T ss_dssp C-------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSC
T ss_pred C-------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCc
Confidence 2 11222333567799999999 4889999999999999999987 4456677 79999
Q ss_pred eEEEEEeCCC--CeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHS--PLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g--~~LLaTgS~DgtIRc 604 (606)
|++++|+|++ ..++++|+.|++|++
T Consensus 207 V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp EEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred EEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 9999999994 447999999999985
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-17 Score=170.35 Aligned_cols=148 Identities=10% Similarity=0.100 Sum_probs=119.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC---------CCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE---------NGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRL 509 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~---------tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIkl 509 (606)
|.++.|+| + +++|+.||+|++|+.. +++.+..+. .+|.+.|.+++|+|. ++.++++|+.||+|++
T Consensus 79 v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 79 PRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE-VDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp CCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE-CCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred ceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcceeEEee-cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 55677888 3 9999999999999765 444444333 377889999999982 3578999999999999
Q ss_pred EeCCCCCCCcccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee-EEEcCCCCCCeEEEEEe
Q 035500 510 FDLNHIPPKVADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPL-QLFTDMHREPINVAKFS 586 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v-~~l~~gH~~~I~sV~fs 586 (606)
||++.+ .++.... +...|.+++|+|++.++++|+.||.|++||+++++.+ ..+..+|...|++++|+
T Consensus 154 wd~~~~----------~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs 223 (343)
T 3lrv_A 154 QSYEDD----------SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA 223 (343)
T ss_dssp EESSSS----------CEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEEC
T ss_pred EECCCC----------cEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEe
Confidence 999973 3444443 3446999999999999999999999999999999887 78883399999999999
Q ss_pred CCCCeEEEEEeCCCeEEE
Q 035500 587 HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIRc 604 (606)
|++.+ +++|+.| +|+.
T Consensus 224 ~~g~~-l~s~~~~-~v~i 239 (343)
T 3lrv_A 224 DNGYW-MVVECDQ-TVVC 239 (343)
T ss_dssp TTSSE-EEEEESS-BEEE
T ss_pred CCCCE-EEEEeCC-eEEE
Confidence 99985 6777744 7764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=170.93 Aligned_cols=157 Identities=15% Similarity=0.234 Sum_probs=128.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| ++ ++++|+.||+|++||+++++....+. +|.+.|.+++|++. ++.++++|+.||+|++||++.....
T Consensus 165 V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 240 (464)
T 3v7d_B 165 VWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240 (464)
T ss_dssp EEEEEECS-TT-EEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred EEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEEEEEC--CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence 88999998 65 99999999999999999999887665 89999999999963 4578999999999999999875321
Q ss_pred cccc-------------cCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 519 VADA-------------RGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 519 ~~~l-------------~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
.... .....+..+.+ ...|.++ +++++++++|+.|+.|++||+++++.+..+. +|...|++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~ 317 (464)
T 3v7d_B 241 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTI 317 (464)
T ss_dssp ------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEE
T ss_pred ccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEE
Confidence 1000 00011334444 3457776 5779999999999999999999999999998 7999999999
Q ss_pred EeCCCCeEEEEEeCCCeEEE
Q 035500 585 FSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 585 fsP~g~~LLaTgS~DgtIRc 604 (606)
|+|++.. +++|+.|++|+.
T Consensus 318 ~~~~~~~-l~sg~~dg~i~v 336 (464)
T 3v7d_B 318 YDHERKR-CISASMDTTIRI 336 (464)
T ss_dssp EETTTTE-EEEEETTSCEEE
T ss_pred EcCCCCE-EEEEeCCCcEEE
Confidence 9999985 889999999985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-17 Score=178.93 Aligned_cols=147 Identities=12% Similarity=0.157 Sum_probs=129.8
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++|+ ++++++|+. ||.|++||+.+++... ....+|...|.+++|+| ++.+|++|+.||.|++||+...
T Consensus 449 ~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~--- 520 (615)
T 1pgu_A 449 GSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSR--- 520 (615)
T ss_dssp EEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT---
T ss_pred ceEEEEc---CCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCC---
Confidence 7788897 689999999 9999999999876653 45568999999999999 6789999999999999999883
Q ss_pred cccccCCcceEEee--cCCCeEEEEEcc----------CCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEE
Q 035500 519 VADARGNSSVATYY--DFEQLTSVHVNS----------TDDQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 519 ~~~l~~~~~i~t~~--~~~~V~sV~~sp----------~g~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~f 585 (606)
..+..+. |...|++++|+| ++.++++|+.||.|++||++++ +.+..+. +|...|++++|
T Consensus 521 -------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~l~~ 592 (615)
T 1pgu_A 521 -------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-AHKDGVNNLLW 592 (615)
T ss_dssp -------EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-SSTTCEEEEEE
T ss_pred -------cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh-cCccceEEEEE
Confidence 4555555 556799999999 9999999999999999999998 7788887 89999999999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|++. +++++.|++|+.
T Consensus 593 s~~~~--l~s~~~d~~v~i 609 (615)
T 1pgu_A 593 ETPST--LVSSGADACIKR 609 (615)
T ss_dssp EETTE--EEEEETTSCEEE
T ss_pred cCCCC--eEEecCCceEEE
Confidence 99998 789999999985
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=168.49 Aligned_cols=146 Identities=13% Similarity=0.151 Sum_probs=123.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-EEEEeccCCCCCEEEEEEeeCCCC-EEEEEECCCeEEEEeC-CCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-ACYIPSIGGTNSVLGLCWLKKYPS-KLVAGSDSGCVRLFDL-NHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~~~gH~~~V~~L~fsp~~~~-~LaSgS~DgtIklWDl-~~~~ 516 (606)
|++++|+| +++++++|+.||.|+|||+.++.. .......+|...|.+++|+| ++. ++++|+.||.|++||+ ...
T Consensus 14 v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~- 90 (342)
T 1yfq_A 14 ISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSP- 90 (342)
T ss_dssp EEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSS-
T ss_pred EEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCC-
Confidence 88999999 899999999999999999987761 11112338999999999999 578 8999999999999999 763
Q ss_pred CCcccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC---------CceeEEEcCCCCCCeEEEE
Q 035500 517 PKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT---------EKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt---------~k~v~~l~~gH~~~I~sV~ 584 (606)
. ...+. |...|.+++|+| ++.+++++.|+.|++||+++ ++++..+. |...|++++
T Consensus 91 ---------~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~ 157 (342)
T 1yfq_A 91 ---------S-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMD 157 (342)
T ss_dssp ---------S-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEE
T ss_pred ---------c-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEE
Confidence 1 23444 456699999999 99999999999999999998 77766665 889999999
Q ss_pred EeCCCCeEEEEEeCCCeEEE
Q 035500 585 FSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 585 fsP~g~~LLaTgS~DgtIRc 604 (606)
|+|++ +++++.|+.|+.
T Consensus 158 ~~~~~---l~~~~~d~~i~i 174 (342)
T 1yfq_A 158 TNSSR---LIVGMNNSQVQW 174 (342)
T ss_dssp ECSSE---EEEEESTTEEEE
T ss_pred ecCCc---EEEEeCCCeEEE
Confidence 99886 788999998875
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-16 Score=158.64 Aligned_cols=147 Identities=12% Similarity=0.193 Sum_probs=125.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
.++|+||| ++ +||+|. |++|+|||+++++....+...+|...|.+++|+| ++.+++||+.||+|++||+++
T Consensus 28 ~~~l~WS~-~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~----- 98 (318)
T 4ggc_A 28 LNLVDWSS-GN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQ----- 98 (318)
T ss_dssp CBCEEECT-TS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTT-----
T ss_pred ceEEEECC-CC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCC-----
Confidence 46789998 54 777765 9999999999999999888889999999999999 678999999999999999998
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...+..+.+|.. +.++ ++.+..+++++.++.+++|+...+.. +..+. +|...+..+.|++.+.. +++++
T Consensus 99 -----~~~~~~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-l~s~~ 169 (318)
T 4ggc_A 99 -----QKRLRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGRH-LASGG 169 (318)
T ss_dssp -----TEEEEEEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSE-EEEEE
T ss_pred -----ceeEEEecCccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEc-CccCceEEEEEcCCCCE-EEEEe
Confidence 456777776544 6555 45578999999999999999997654 56666 79999999999999984 88999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|++
T Consensus 170 ~d~~i~i 176 (318)
T 4ggc_A 170 NDNLVNV 176 (318)
T ss_dssp TTSCEEE
T ss_pred cCcceeE
Confidence 9999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=158.89 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=126.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++| | +++++++|+.||.|++||+.+++....+. .|.+.|.+++|+| ++..+++|+.||.|++|++.....
T Consensus 21 v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~-- 93 (313)
T 3odt_A 21 VRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVY--TGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSG-- 93 (313)
T ss_dssp EEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEE--ECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTT--
T ss_pred cEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEee--cCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCC--
Confidence 889999 7 88999999999999999999888777655 8899999999999 678999999999999999987432
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++..+. +...|.+++| +++.+++++.|+.|++|| .++.+..+. +|...|.+++|+|.....+++++.
T Consensus 94 -----~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 94 -----EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp -----SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTTTEEEEEET
T ss_pred -----CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-cCCCceeEEEEccCCCCEEEEEEC
Confidence 23455555 4566999999 578999999999999999 677788888 799999999999843446899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|+.
T Consensus 164 d~~i~i 169 (313)
T 3odt_A 164 DKTIKL 169 (313)
T ss_dssp TSCEEE
T ss_pred CCCEEE
Confidence 999875
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-17 Score=188.46 Aligned_cols=154 Identities=13% Similarity=0.088 Sum_probs=128.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|++++|+| +++++++|+.||+|+|||+.++.......+.+|.+.|++++|+|.. +.++++|+.||+|++||+..+.
T Consensus 12 V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~-- 88 (753)
T 3jro_A 12 IHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-- 88 (753)
T ss_dssp EEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE--
T ss_pred eEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc--
Confidence 88999999 8999999999999999999854433333445999999999998742 7899999999999999998732
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCc--eeEEEcCCCCCCeEEEEEeCC-----
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNST--DDQFLASGYSKNVALYDINTEK--PLQLFTDMHREPINVAKFSHH----- 588 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k--~v~~l~~gH~~~I~sV~fsP~----- 588 (606)
...+..+. |..+|.+++|+|+ ++.+++|+.||+|++||++++. ....+. +|...|++++|+|.
T Consensus 89 ------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 89 ------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEED 161 (753)
T ss_dssp ------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEECCCC----
T ss_pred ------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEecCcccccc
Confidence 12445555 4567999999999 8999999999999999999873 345566 79999999999995
Q ss_pred --------CCeEEEEEeCCCeEEE
Q 035500 589 --------SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 589 --------g~~LLaTgS~DgtIRc 604 (606)
+. .+++|+.||+|+.
T Consensus 162 ~~~~~~~d~~-~l~sgs~dg~I~i 184 (753)
T 3jro_A 162 GEHNGTKESR-KFVTGGADNLVKI 184 (753)
T ss_dssp -----CGGGC-CEEEEETTSCEEE
T ss_pred cccccCCCCC-EEEEEECCCeEEE
Confidence 55 5899999999985
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=175.62 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=119.0
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEE---eccCCCCCEEEEEEeeC-------CCCEEEEEECCCeEEEEeCCC
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYI---PSIGGTNSVLGLCWLKK-------YPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~---~~~gH~~~V~~L~fsp~-------~~~~LaSgS~DgtIklWDl~~ 514 (606)
+.|.++.++|+|+.|++|++||..++...... .+.||.+.|.+++|+|. ++.+|+|||.|++|++||++.
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 34447889999999999999999987664322 25699999999999972 457899999999999999987
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEc--------------------
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFT-------------------- 573 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~-------------------- 573 (606)
. ......+.++.+|.+++|+|++ .++++|+.|++|++||+++++......
T Consensus 176 ~---------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 176 E---------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp T---------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred C---------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 3 2334566678889999999997 589999999999999999876532221
Q ss_pred ----CCCCCCeEEEEEe-CCCCeEEEEEeCCCeEEE
Q 035500 574 ----DMHREPINVAKFS-HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ----~gH~~~I~sV~fs-P~g~~LLaTgS~DgtIRc 604 (606)
.+|...|.+++|+ |++. .+++++.|+++++
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~v 281 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLR 281 (393)
T ss_dssp -----CCSSSCSEEEEETTTTC-EEEEECTTSEEEE
T ss_pred eeecccccccceeeeeecCCCC-EEEEEeCCCCEEE
Confidence 2588889999997 6776 5889999999885
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=174.38 Aligned_cols=161 Identities=12% Similarity=0.079 Sum_probs=115.7
Q ss_pred eeEEEEcC-------CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 440 PRQFEYNP-------SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP-------~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
|.+++|+| .++++||+||.|++|+|||+.++....... +|.+.|.+++|+|.++.+|++|+.||+|++||+
T Consensus 139 v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~ 216 (393)
T 4gq1_A 139 VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY--PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDW 216 (393)
T ss_dssp EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE--ECSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred eEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec--CCCCCcEEEEECCCCCceEEecCCCCEEEEEEC
Confidence 88999987 378899999999999999998877665443 888999999999966678999999999999999
Q ss_pred CCCCCCcccc--------------------------------------cCCcce---------EEee-------------
Q 035500 513 NHIPPKVADA--------------------------------------RGNSSV---------ATYY------------- 532 (606)
Q Consensus 513 ~~~~~~~~~l--------------------------------------~~~~~i---------~t~~------------- 532 (606)
+......... .....+ ..+.
T Consensus 217 ~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~ 296 (393)
T 4gq1_A 217 TLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS 296 (393)
T ss_dssp TCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------
T ss_pred CCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee
Confidence 8653211000 000000 0000
Q ss_pred -----------------cCCCeEEEEEccC-CC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 533 -----------------DFEQLTSVHVNST-DD-QFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 533 -----------------~~~~V~sV~~sp~-g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
.........|+|. +. ++++|+.||+|++||+.+++....+. +|...|++++|+|+|++ |
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~-L 374 (393)
T 4gq1_A 297 TMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSH-L 374 (393)
T ss_dssp -------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSE-E
T ss_pred cCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCE-E
Confidence 0000011123332 23 56677789999999999988887777 68899999999999995 7
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
|+++.||++..
T Consensus 375 A~as~~Gv~lv 385 (393)
T 4gq1_A 375 AIATEGSVLLT 385 (393)
T ss_dssp EEEESSEEEEE
T ss_pred EEEeCCCeEEE
Confidence 89999997543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=183.52 Aligned_cols=145 Identities=7% Similarity=-0.018 Sum_probs=117.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE-----------------------------EEEeccCCCCCEEEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA-----------------------------CYIPSIGGTNSVLGLCW 490 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v-----------------------------~~~~~~gH~~~V~~L~f 490 (606)
|.+++|+| ||+++|+|+.|++|+ |.+.++.+ ..+. .+|...|.+++|
T Consensus 18 v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~-~~~~~~V~~vaw 93 (588)
T 2j04_A 18 KNNLTWAR-DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLN-SQPVCYPRVCKP 93 (588)
T ss_dssp SCCEEECT-TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSST-TSCSCCEEEEEE
T ss_pred EEEEEECC-CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEee-cCCCCcEEEEEE
Confidence 67899999 999999999999996 54333311 1111 256788999999
Q ss_pred eeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCC-----CeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 491 LKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFE-----QLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 491 sp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~-----~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
+| ++.+||+++.||+|++||... .+..+.++. .|.+++|||+|+++|+|+.||+|++||+.+
T Consensus 94 SP-dG~~LAs~s~dg~V~iwd~~~------------~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 94 SP-IDDWMAVLSNNGNVSVFKDNK------------MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp CS-SSSCEEEEETTSCEEEEETTE------------EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred CC-CCCEEEEEeCCCcEEEEeCCc------------eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 99 678999999999999999443 445555333 499999999999999999999999999998
Q ss_pred Cce-------eEEEc---CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 566 EKP-------LQLFT---DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 566 ~k~-------v~~l~---~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++. +.+++ .+|.+.|.+++|+|+| +++++.|++||.
T Consensus 161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrl 206 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFS 206 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEE
T ss_pred CccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEE
Confidence 853 56662 3688999999999998 678888999984
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=182.35 Aligned_cols=150 Identities=16% Similarity=0.196 Sum_probs=131.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|++++|+| ++.++++|+.||+|++||+.++ .....+. +|...|.+++|+|.++..+++|+.||+|++||+...
T Consensus 100 v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~--- 173 (814)
T 3mkq_A 100 IRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS--- 173 (814)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEE--CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS---
T ss_pred EEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEc--CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Confidence 88999999 8999999999999999999886 4444444 899999999999856679999999999999999873
Q ss_pred cccccCCcceEEee-cC-CCeEEEEEcc--CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYY-DF-EQLTSVHVNS--TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~-~~V~sV~~sp--~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
.+...+. ++ ..+.+++|+| ++.++++|+.||.|++||+++++.+..+. +|...|++++|+|+++ +++
T Consensus 174 -------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~ 244 (814)
T 3mkq_A 174 -------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP-III 244 (814)
T ss_dssp -------SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSS-EEE
T ss_pred -------cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCC-EEE
Confidence 2334444 33 6799999999 88999999999999999999999999998 7999999999999998 588
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+|+.|+.|+.
T Consensus 245 ~~~~dg~v~v 254 (814)
T 3mkq_A 245 SGSEDGTLKI 254 (814)
T ss_dssp EEETTSCEEE
T ss_pred EEeCCCeEEE
Confidence 9999999875
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=169.82 Aligned_cols=153 Identities=13% Similarity=0.160 Sum_probs=126.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE--EEeccCCCCCEEEEEEeeC--CCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC--YIPSIGGTNSVLGLCWLKK--YPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~--~~~~~gH~~~V~~L~fsp~--~~~~LaSgS~DgtIklWDl~~~ 515 (606)
|.+++|+| ++.+|++|+.||.|++|++.++.... ...+.+|.+.|.+++|+|+ .+.+|++|+.|++|++||++.+
T Consensus 152 v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 152 PNAISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred ceEEEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 78999999 99999999999999999998776542 1123489999999999994 1679999999999999999873
Q ss_pred CCCcccccCCcceEE-ee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC-------------------
Q 035500 516 PPKVADARGNSSVAT-YY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD------------------- 574 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t-~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~------------------- 574 (606)
..+.. +. |...|.+++|+ ++.++++|+.|++|++||+++++.+..+..
T Consensus 231 ----------~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 231 ----------FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ 299 (450)
T ss_dssp ----------TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred ----------ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence 34544 32 45679999999 999999999999999999999998887762
Q ss_pred -----CCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 575 -----MHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 575 -----gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+...|..++|+|++.++++++..|+.|++
T Consensus 300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~i 334 (450)
T 2vdu_B 300 NENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIII 334 (450)
T ss_dssp -----CBCCCEEEEEECSSSSEEEEEETTCSEEEE
T ss_pred ccccccceEEEEEEEEeCCCCEEEEEECCCCeEEE
Confidence 124579999999999976555558998875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=168.87 Aligned_cols=148 Identities=10% Similarity=0.046 Sum_probs=117.8
Q ss_pred eeEEEEcCCCCCEEEEEe--CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGT--LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs--~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
+++++||| ||+++|+|+ .|++|+|||+++++.+..+ .|.+.|.+++|+| ++.++++++.|+ +++|+...+.
T Consensus 136 ~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~---~~~~~V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~~~- 208 (365)
T 4h5i_A 136 TKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEI---ETRGEVKDLHFST-DGKVVAYITGSS-LEVISTVTGS- 208 (365)
T ss_dssp EEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEE---ECSSCCCEEEECT-TSSEEEEECSSC-EEEEETTTCC-
T ss_pred EEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEe---CCCCceEEEEEcc-CCceEEecccee-EEEEEeccCc-
Confidence 78899999 999877554 7899999999999887765 4778899999999 678999998665 5566655531
Q ss_pred CcccccCCcce-EEee-cCCCeEEEEEccCCCEEEEEeCCC----cEEEEECCCCce----eEEEcCCCCCCeEEEEEeC
Q 035500 518 KVADARGNSSV-ATYY-DFEQLTSVHVNSTDDQFLASGYSK----NVALYDINTEKP----LQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 518 ~~~~l~~~~~i-~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg----~I~IWDlrt~k~----v~~l~~gH~~~I~sV~fsP 587 (606)
... .... +...|.+++|+|++..+++++.|+ .++.||+..... ...+. +|...|++++|+|
T Consensus 209 --------~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Sp 279 (365)
T 4h5i_A 209 --------CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDM 279 (365)
T ss_dssp --------EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECT
T ss_pred --------ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec-CCCCCeEeEEECC
Confidence 111 1222 345599999999999999999887 688999887654 34566 6999999999999
Q ss_pred CCCeEEEEEeCCCeEEE
Q 035500 588 HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIRc 604 (606)
+|. ++|+|+.|++|++
T Consensus 280 dg~-~lasgs~D~~V~i 295 (365)
T 4h5i_A 280 KGE-LAVLASNDNSIAL 295 (365)
T ss_dssp TSC-EEEEEETTSCEEE
T ss_pred CCC-ceEEEcCCCEEEE
Confidence 998 5899999999986
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=160.46 Aligned_cols=151 Identities=12% Similarity=0.099 Sum_probs=123.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++|+| ++ +++|+.||.|++||+++ +..........|...|.+++|+|.++..+++|+.||.|++||++.....
T Consensus 153 v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 229 (342)
T 1yfq_A 153 IFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229 (342)
T ss_dssp EEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred eEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc
Confidence 78999998 54 99999999999999988 5543333344788999999999823579999999999999999874100
Q ss_pred cccccCCcceEEeecC----------CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC-CCCeEEEEEeC
Q 035500 519 VADARGNSSVATYYDF----------EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMH-REPINVAKFSH 587 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~----------~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH-~~~I~sV~fsP 587 (606)
. ...+...+..+ .+|.+++|+|+++++++|+.||.|++||+++++.+..+. +| ...|++++ |
T Consensus 230 ~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~--~ 302 (342)
T 1yfq_A 230 Y----NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIA--C 302 (342)
T ss_dssp T----TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSSEEEEEE--E
T ss_pred c----ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh-cccCCCceEec--C
Confidence 0 01344555543 279999999999999999999999999999999999998 67 99999999 8
Q ss_pred CCCeEEEEEeCCCe
Q 035500 588 HSPLCLLLLHLTTM 601 (606)
Q Consensus 588 ~g~~LLaTgS~Dgt 601 (606)
++. ++++|+.|++
T Consensus 303 ~~~-~l~s~s~Dg~ 315 (342)
T 1yfq_A 303 SDN-ILCLATSDDT 315 (342)
T ss_dssp CSS-EEEEEEECTH
T ss_pred CCC-eEEEEecCCc
Confidence 888 5889999987
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-16 Score=167.50 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=127.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| +++++++|+.||+|++||+.+++.+..+. +|...|.+++|++ .++++|+.||+|++||++..
T Consensus 313 v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~---- 382 (464)
T 3v7d_B 313 IYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQ--GHTALVGLLRLSD---KFLVSAAADGSIRGWDANDY---- 382 (464)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECS---SEEEEEETTSEEEEEETTTC----
T ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCC----
Confidence 88999999 89999999999999999999999887665 8999999999974 69999999999999999983
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.......+...+..++|+|++.++++|+ ||.|++||+++++.+..+..+|...|++++|+ +..++++++.|
T Consensus 383 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~ 453 (464)
T 3v7d_B 383 ------SRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKD 453 (464)
T ss_dssp ------CEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEET
T ss_pred ------ceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeC
Confidence 3445555667788899999999999999 89999999999999887555799999999997 56788888888
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
+.+-.
T Consensus 454 g~~~i 458 (464)
T 3v7d_B 454 GQSFL 458 (464)
T ss_dssp TEEEE
T ss_pred CeEEE
Confidence 87643
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=176.60 Aligned_cols=149 Identities=14% Similarity=0.164 Sum_probs=116.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCC-----CEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTN-----SVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~-----~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
|.+++||| +|.++|+++.||+|+|||.++ ....+ . |.. .|.+++|+| ++.+|++|+.||+|++||+..
T Consensus 88 V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l--~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 88 PRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNL--D-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp EEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEEC--C-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCC
T ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeec--c-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCC
Confidence 88999999 999999999999999999654 33332 2 544 599999999 679999999999999999988
Q ss_pred CCCCcccccCCcceEEee-----cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce---eEEEcCCCCCCeEEEEEe
Q 035500 515 IPPKVADARGNSSVATYY-----DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP---LQLFTDMHREPINVAKFS 586 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~-----~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~---v~~l~~gH~~~I~sV~fs 586 (606)
+..... .--.+.++. |...|.+++|+|+| +++++.|++|++||+..++. .+++..+|...|.+++|+
T Consensus 161 ~~l~~~---~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 161 NSENTP---EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp CTTTCC---CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred Cccccc---cceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence 421000 000245653 23469999999999 88999999999999998773 356644789999999999
Q ss_pred CCCCeEEEEEeCCCeEEE
Q 035500 587 HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIRc 604 (606)
|. .+|+++ |++|++
T Consensus 236 --g~-~LASa~-~~tIkL 249 (588)
T 2j04_A 236 --DY-KVVLTC-PGYVHK 249 (588)
T ss_dssp --TT-EEEEEC-SSEEEE
T ss_pred --CC-EEEEEe-CCeEEE
Confidence 55 577776 688875
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.1e-16 Score=164.80 Aligned_cols=147 Identities=12% Similarity=0.207 Sum_probs=127.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
...|+|++ + ++||+|. |++|+|||..+|+....+...+|...|++++|+| ++.+|++|+.||+|++||+.+
T Consensus 108 ~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~----- 178 (420)
T 4gga_A 108 LNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQ----- 178 (420)
T ss_dssp CBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----
T ss_pred ceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCC-----
Confidence 56789997 4 5887775 9999999999999998888889999999999999 678999999999999999998
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEK-PLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...+..+.+| ..+.+++|+ +..+++|+.|+.+++||.+... .+..+. +|...+..+.|+|++.. +++++
T Consensus 179 -----~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~~g~~-l~s~~ 249 (420)
T 4gga_A 179 -----QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGRH-LASGG 249 (420)
T ss_dssp -----TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSE-EEEEE
T ss_pred -----CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecCCCCe-eeeee
Confidence 4567777755 458888775 6899999999999999999754 466777 79999999999999984 88999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|+.+++
T Consensus 250 ~D~~v~i 256 (420)
T 4gga_A 250 NDNLVNV 256 (420)
T ss_dssp TTSCEEE
T ss_pred ccccceE
Confidence 9999875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-17 Score=175.97 Aligned_cols=150 Identities=9% Similarity=0.047 Sum_probs=120.0
Q ss_pred eeEEEEcCCCCCEEE----EEeCCCcEEEEECCCC--------ceEE-EEeccCCCCCEEEEEEeeCCCCEEEEEECCCe
Q 035500 440 PRQFEYNPSNPSLMA----FGTLDGEVIVINHENG--------NVAC-YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC 506 (606)
Q Consensus 440 V~slafsP~dg~~La----SGs~DGtVrIWDi~tg--------~~v~-~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt 506 (606)
|++++|+| +++++| +|+.||+|+|||+.++ +.+. .....+|.+.|.+++|+|..+.+|++|+.||+
T Consensus 95 v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 95 IHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp EEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred ccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 88999999 899999 7889999999998654 2111 12344799999999999976889999999999
Q ss_pred EEEEeCCCCCCCcccccCCcceE-EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC------CCCCC
Q 035500 507 VRLFDLNHIPPKVADARGNSSVA-TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD------MHREP 579 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~-t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~------gH~~~ 579 (606)
|++||++.. ..+. ...|...|.+++|+|+|+++++|+.||+|++||++ ++....+.. .|...
T Consensus 174 v~iwD~~~~----------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~ 242 (434)
T 2oit_A 174 IAVLQVTET----------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVR 242 (434)
T ss_dssp EEEEEESSS----------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEE
T ss_pred EEEEEcCCC----------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCcee
Confidence 999999983 2233 33356679999999999999999999999999999 666555541 12338
Q ss_pred eEEEEEeCCCCeEEEEEeCCCe
Q 035500 580 INVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
|.+++|++++.++++.++.||.
T Consensus 243 v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 243 VLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEEecCceEEEEEccCCCc
Confidence 9999999998877777777754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-16 Score=162.71 Aligned_cols=160 Identities=11% Similarity=0.086 Sum_probs=116.2
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC----------------C-------
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY----------------P------- 495 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~----------------~------- 495 (606)
+..+++.+ +++.+ ++|+.|++|++||..+++.+..+. |...|.+++|+++. .
T Consensus 61 ~~~~~~~~-~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 136 (355)
T 3vu4_A 61 LSKVRMLH-RTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDD 136 (355)
T ss_dssp CCEEEECT-TSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCC
T ss_pred eEEEEEcC-CCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEe
Confidence 45677888 55666 568889999999999999887664 55689998887631 0
Q ss_pred -----------CEEEE--EECCCeEEEEeCCCCCCCcccc-----cCCcc-eEEeec-CCCeEEEEEccCCCEEEEEeCC
Q 035500 496 -----------SKLVA--GSDSGCVRLFDLNHIPPKVADA-----RGNSS-VATYYD-FEQLTSVHVNSTDDQFLASGYS 555 (606)
Q Consensus 496 -----------~~LaS--gS~DgtIklWDl~~~~~~~~~l-----~~~~~-i~t~~~-~~~V~sV~~sp~g~~LaSgs~D 555 (606)
..++. |+.||+|++||++......... ....+ +..+.+ ..+|.+++|+|++.++++|+.|
T Consensus 137 ~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d 216 (355)
T 3vu4_A 137 IRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD 216 (355)
T ss_dssp EEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC
Confidence 12222 3455555555555421000000 00012 556664 4669999999999999999999
Q ss_pred Cc-EEEEECCCCceeEEEcCC-CCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 556 KN-VALYDINTEKPLQLFTDM-HREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 556 g~-I~IWDlrt~k~v~~l~~g-H~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++ |++||+++++.+..+..+ |...|++++|+|++.+ +++|+.|++|++
T Consensus 217 ~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~d~~v~i 266 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLHV 266 (355)
T ss_dssp CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCE-EEEEETTCEEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCE-EEEEECCCEEEE
Confidence 98 999999999999999855 9999999999999984 889999999985
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-16 Score=161.20 Aligned_cols=146 Identities=11% Similarity=0.153 Sum_probs=113.8
Q ss_pred EEEEcCCCCCEEEE--EeCCCcEEEEECCCCc----------------eEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC
Q 035500 442 QFEYNPSNPSLMAF--GTLDGEVIVINHENGN----------------VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD 503 (606)
Q Consensus 442 slafsP~dg~~LaS--Gs~DGtVrIWDi~tg~----------------~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~ 503 (606)
.++++| .++|+ |+.||+|++||+.++. .... +.+|.+.|.+++|+| ++.+|+|||.
T Consensus 142 ~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~--~~~h~~~v~~~~~s~-~g~~l~s~s~ 215 (355)
T 3vu4_A 142 VCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVL--IKAHTNPIKMVRLNR-KSDMVATCSQ 215 (355)
T ss_dssp EEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEE--ECCCSSCEEEEEECT-TSSEEEEEET
T ss_pred eEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEE--EEccCCceEEEEECC-CCCEEEEEeC
Confidence 345666 56666 5899999999998765 1333 349999999999999 6789999999
Q ss_pred CCe-EEEEeCCCCCCCcccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eEE------
Q 035500 504 SGC-VRLFDLNHIPPKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP--LQL------ 571 (606)
Q Consensus 504 Dgt-IklWDl~~~~~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~--v~~------ 571 (606)
||+ |++||+++ ..++.++. |...|.+++|+|+++++++++.|++|++||++.+.. ...
T Consensus 216 d~~~v~iwd~~~----------~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 216 DGTIIRVFKTED----------GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp TCSEEEEEETTT----------CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred CCCEEEEEECCC----------CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 998 99999998 45677777 567799999999999999999999999999986532 111
Q ss_pred --------------EcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 572 --------------FTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 572 --------------l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+..++......++|+|++.. +++++.||.++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~-l~~~~~dg~~~~ 331 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL-VVVWPHTRMIET 331 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE-EEEETTTTEEEE
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCE-EEEEeCCCeEEE
Confidence 11112233477999999985 788889998864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.6e-16 Score=184.30 Aligned_cols=151 Identities=15% Similarity=0.195 Sum_probs=129.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| +++++|+|+.||+|+|||+.+++.+..+. +|.+.|.+++|+|. +...+++|+.||+|++||+++
T Consensus 660 v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~---- 732 (1249)
T 3sfz_A 660 VLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ---- 732 (1249)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS----
T ss_pred EEEEEEec-CCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC----
Confidence 88999999 99999999999999999999999888766 89999999999985 345899999999999999988
Q ss_pred cccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEE-------------------------
Q 035500 519 VADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLF------------------------- 572 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l------------------------- 572 (606)
..++.++.+ ..+|.+++|+|+++++++++.||+|++||+++++....+
T Consensus 733 ------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 733 ------KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp ------SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred ------cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 345666664 566999999999999999999999999999876543322
Q ss_pred -----------------------------cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 573 -----------------------------TDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 573 -----------------------------~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+|...|.+++|+|++. ++++|+.|+.|+.
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~v 866 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVEL 866 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEE
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEE
Confidence 226788999999999988 4788999998875
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-15 Score=159.69 Aligned_cols=141 Identities=13% Similarity=0.251 Sum_probs=121.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.++.+ +++++++|+.||+|++||+.+++....+. +|.+.|++++|++ ..+++|+.||+|++||+.+
T Consensus 122 ~~~~~~---~g~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~----- 188 (445)
T 2ovr_B 122 ITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLV--GHTGGVWSSQMRD---NIIISGSTDRTLKVWNAET----- 188 (445)
T ss_dssp EEEEEE---ETTEEEEEETTSCEEEEETTTCCEEEECC--CCSSCEEEEEEET---TEEEEEETTSCEEEEETTT-----
T ss_pred EEEEEE---cCCEEEEEECCCcEEEEECCCCcEEEEEc--CCCCCEEEEEecC---CEEEEEeCCCeEEEEECCc-----
Confidence 445444 57899999999999999999999887655 9999999999984 6999999999999999988
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+.++.+ ...|.+++|+ ++.+++|+.||+|++||+++++.+..+. +|...|++++| ++. .+++|+.
T Consensus 189 -----~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~--~~~-~l~~~~~ 257 (445)
T 2ovr_B 189 -----GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGR-RVVSGAY 257 (445)
T ss_dssp -----TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEE--CSS-CEEEEET
T ss_pred -----CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEE--CCC-EEEEEcC
Confidence 345666764 4569999985 6789999999999999999999999998 79999999999 455 4889999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|+.
T Consensus 258 dg~i~i 263 (445)
T 2ovr_B 258 DFMVKV 263 (445)
T ss_dssp TSCEEE
T ss_pred CCEEEE
Confidence 999875
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-15 Score=160.19 Aligned_cols=141 Identities=18% Similarity=0.318 Sum_probs=119.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++++ +++++++|+.||+|++||..+++....+. +|.+.|.+++|. +..+++|+.||+|++||+.++
T Consensus 136 v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~---- 203 (435)
T 1p22_A 136 VYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILT--GHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTG---- 203 (435)
T ss_dssp EEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEEC--CCSSCEEEEECC---SSEEEEEETTSCEEEEESSSC----
T ss_pred EEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--CCCCcEEEEEEC---CCEEEEEcCCCeEEEEECCCC----
Confidence 555555 78999999999999999999999887665 999999999993 479999999999999999883
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee---EEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPL---QLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v---~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
..+.++.+ ...|.+++|+ ++.+++|+.||.|++||+++++.. ..+. +|...|++++| ++. .+++
T Consensus 204 ------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~-~l~s 271 (435)
T 1p22_A 204 ------EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDF--DDK-YIVS 271 (435)
T ss_dssp ------CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEEC-CCSSCEEEEEE--ETT-EEEE
T ss_pred ------cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEec-CCCCcEEEEEe--CCC-EEEE
Confidence 45666664 4669999997 569999999999999999988765 5566 79999999999 445 5889
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
|+.|++|++
T Consensus 272 ~~~dg~i~v 280 (435)
T 1p22_A 272 ASGDRTIKV 280 (435)
T ss_dssp EETTSEEEE
T ss_pred EeCCCeEEE
Confidence 999999875
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=165.98 Aligned_cols=148 Identities=12% Similarity=0.130 Sum_probs=128.3
Q ss_pred eeEEEEcCCCCCEEEEEeCC----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
|.+++|+| +++++++++.| +.|++|| +++....+ .+|...|.+++|+|++...+++++.|++|++||+..
T Consensus 119 v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~- 192 (615)
T 1pgu_A 119 ISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEV--SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP- 192 (615)
T ss_dssp EEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEEEEC--CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-
T ss_pred EEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcceee--ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-
Confidence 88999999 99999999988 7888888 45665544 499999999999996555899999999999999887
Q ss_pred CCCcccccCCcceEEeec-CC---CeEEEEEccC-CCEEEEEeCCCcEEEEECCCCceeEEEcC---CCCCCeEEEEEeC
Q 035500 516 PPKVADARGNSSVATYYD-FE---QLTSVHVNST-DDQFLASGYSKNVALYDINTEKPLQLFTD---MHREPINVAKFSH 587 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~-~~---~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~---gH~~~I~sV~fsP 587 (606)
...+..+.. .. .|.+++|+|+ ++++++++.|+.|++||+++++.+..+.. +|...|++++|+
T Consensus 193 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~- 262 (615)
T 1pgu_A 193 ---------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL- 262 (615)
T ss_dssp ---------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-
T ss_pred ---------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-
Confidence 456667764 45 6999999999 99999999999999999999999998844 699999999999
Q ss_pred CCCeEEEEEeCCCeEEE
Q 035500 588 HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIRc 604 (606)
++. .+++++.|+.|+.
T Consensus 263 ~~~-~l~~~~~d~~i~~ 278 (615)
T 1pgu_A 263 DSQ-KFATVGADATIRV 278 (615)
T ss_dssp SSS-EEEEEETTSEEEE
T ss_pred CCC-EEEEEcCCCcEEE
Confidence 776 5889999999875
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-15 Score=160.29 Aligned_cols=144 Identities=13% Similarity=0.179 Sum_probs=122.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++| +++++++|+.||+|++||+.+++....+. +|...|.+++|++ ..+++|+.||+|++||+.....
T Consensus 176 v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~-- 245 (435)
T 1p22_A 176 VLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTD-- 245 (435)
T ss_dssp EEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEEC--CCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSC--
T ss_pred EEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEEc--CCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCC--
Confidence 677777 66899999999999999999999887665 8999999999974 5999999999999999987431
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
......+. |...|.+++| +++++++|+.||.|++||+++++.+..+. +|...|.+++|+ +. .+++|+.
T Consensus 246 -----~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~-~l~~g~~ 314 (435)
T 1p22_A 246 -----ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DR-LVVSGSS 314 (435)
T ss_dssp -----CEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TT-EEEEEET
T ss_pred -----ceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC--CC-EEEEEeC
Confidence 11123444 4566999998 68899999999999999999999999999 799999999995 34 6899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++|+.
T Consensus 315 dg~i~i 320 (435)
T 1p22_A 315 DNTIRL 320 (435)
T ss_dssp TSCEEE
T ss_pred CCeEEE
Confidence 999985
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-15 Score=157.81 Aligned_cols=141 Identities=18% Similarity=0.262 Sum_probs=122.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|++ +++++|+.||+|++||+++++....+. +|...|.+++|++ ..+++|+.||+|++||+..+
T Consensus 162 v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~---- 229 (445)
T 2ovr_B 162 VWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLY--GHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETG---- 229 (445)
T ss_dssp EEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEET---TEEEEEETTSEEEEEESSSC----
T ss_pred EEEEEecC---CEEEEEeCCCeEEEEECCcCcEEEEEC--CCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCC----
Confidence 77888964 699999999999999999998887665 8999999999974 58999999999999999973
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.++..+.+ ..+|.+++| +++.+++|+.||.|++||+++++.+..+. +|...|.+++| ++. .+++|+.
T Consensus 230 ------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~-~l~~~~~ 297 (445)
T 2ovr_B 230 ------QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGI-HVVSGSL 297 (445)
T ss_dssp ------CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSS-EEEEEET
T ss_pred ------cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCC-EEEEEeC
Confidence 45666664 566999988 68899999999999999999999999998 79999999999 455 5889999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|++
T Consensus 298 d~~i~i 303 (445)
T 2ovr_B 298 DTSIRV 303 (445)
T ss_dssp TSCEEE
T ss_pred CCeEEE
Confidence 999875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-15 Score=152.90 Aligned_cols=148 Identities=12% Similarity=0.155 Sum_probs=124.3
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~~ 517 (606)
+.+++|+| +++++ ++++.||+|++||..+++....+. .| ..+.+++|+|+ +..+ ++++.|+.|++||+.+
T Consensus 34 ~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--~~-~~v~~~~~spd-g~~l~~~~~~~~~v~v~d~~~--- 105 (391)
T 1l0q_A 34 PMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVP--AG-SSPQGVAVSPD-GKQVYVTNMASSTLSVIDTTS--- 105 (391)
T ss_dssp EEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE--CS-SSEEEEEECTT-SSEEEEEETTTTEEEEEETTT---
T ss_pred cceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEEE--CC-CCccceEECCC-CCEEEEEECCCCEEEEEECCC---
Confidence 77899999 78766 677799999999999999887665 33 38999999995 4555 5666789999999998
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQF-LASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~L-aSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...+..+.++..+.+++|+|+++.+ ++++.|+.|++||+++++.+..+. .| ..+.+++|+|++.++++++
T Consensus 106 -------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 106 -------NTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VG-RSPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp -------TEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CC-SSEEEEEECTTSSEEEEEE
T ss_pred -------CeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-cC-CCcceEEECCCCCEEEEEe
Confidence 3456677777889999999999866 788889999999999999988888 34 5679999999999888899
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|+.|+.
T Consensus 177 ~~~~~v~~ 184 (391)
T 1l0q_A 177 FDSMSISV 184 (391)
T ss_dssp TTTTEEEE
T ss_pred CCCCEEEE
Confidence 99998874
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-15 Score=155.15 Aligned_cols=149 Identities=6% Similarity=-0.047 Sum_probs=128.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| ++.++++++.||.|++||.++++....+. .|...+.+++|+|+ +..+ ++++.|++|++||++.
T Consensus 172 v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~---- 243 (433)
T 3bws_A 172 VETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATVD--LTGKWSKILLYDPI-RDLVYCSNWISEDISVIDRKT---- 243 (433)
T ss_dssp EEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEEE--CSSSSEEEEEEETT-TTEEEEEETTTTEEEEEETTT----
T ss_pred eeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEEc--CCCCCeeEEEEcCC-CCEEEEEecCCCcEEEEECCC----
Confidence 78899998 89999999999999999999988887665 78889999999995 4555 5666899999999987
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEe--------CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG--------YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--------~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
...+..+..+..+.+++|+|+++.+++++ .|+.|++||+++++.+..+. |...+..++|+|+++
T Consensus 244 ------~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 244 ------KLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTEN 315 (433)
T ss_dssp ------TEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTT
T ss_pred ------CcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCC
Confidence 34566666677799999999999988887 58899999999998877765 667899999999999
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
.++++++.|+.|+.
T Consensus 316 ~l~~~~~~~~~v~v 329 (433)
T 3bws_A 316 KIYVSDMCCSKIEV 329 (433)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEecCCCEEEE
Confidence 99999999998875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-14 Score=146.83 Aligned_cols=148 Identities=19% Similarity=0.168 Sum_probs=125.1
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~~ 517 (606)
+.+++|+| +++.+ ++++.|+.|++||+.+++....+. .| ..+.+++|+|+ +..+ ++++.|+.|++||++.
T Consensus 118 ~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~-~~~~~~~~~~d-g~~l~~~~~~~~~v~~~d~~~--- 189 (391)
T 1l0q_A 118 PLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVS--VG-RSPKGIAVTPD-GTKVYVANFDSMSISVIDTVT--- 189 (391)
T ss_dssp EEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE--CC-SSEEEEEECTT-SSEEEEEETTTTEEEEEETTT---
T ss_pred cceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEe--cC-CCcceEEECCC-CCEEEEEeCCCCEEEEEECCC---
Confidence 67899999 77766 788889999999999998877664 33 46799999995 4555 7888999999999987
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe---CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG---YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs---~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
...+..+.++..+.+++|+|+++++++++ .++.|++||+++++.+..+. .| ..+.+++|+|++.++++
T Consensus 190 -------~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~ 260 (391)
T 1l0q_A 190 -------NSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VG-PDPAGIAVTPDGKKVYV 260 (391)
T ss_dssp -------TEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CC-SSEEEEEECTTSSEEEE
T ss_pred -------CeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe-cC-CCccEEEEccCCCEEEE
Confidence 34566677777899999999999888887 68999999999999988888 45 45899999999998889
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+++.|+.|+.
T Consensus 261 s~~~d~~v~v 270 (391)
T 1l0q_A 261 ALSFXNTVSV 270 (391)
T ss_dssp EETTTTEEEE
T ss_pred EcCCCCEEEE
Confidence 9999999875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-15 Score=160.62 Aligned_cols=158 Identities=8% Similarity=-0.005 Sum_probs=118.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-----------ceEEE--EeccCCCCCEEEEEEeeCCCCEEE----EEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-----------NVACY--IPSIGGTNSVLGLCWLKKYPSKLV----AGS 502 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-----------~~v~~--~~~~gH~~~V~~L~fsp~~~~~La----SgS 502 (606)
+..+++++ ++.++++|+.|| |+||+.... ..... .....|.+.|.+++|+| ++.+|+ +|+
T Consensus 39 ~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sgs 115 (434)
T 2oit_A 39 SSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSSE 115 (434)
T ss_dssp CBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEETT
T ss_pred ccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEeccC
Confidence 56789999 778999999998 999874310 11100 01124667899999999 567888 889
Q ss_pred CCCeEEEEeCCCCCCCcccccCCcc---eEEee-cCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 035500 503 DSGCVRLFDLNHIPPKVADARGNSS---VATYY-DFEQLTSVHVNST-DDQFLASGYSKNVALYDINTEKPLQLFTDMHR 577 (606)
Q Consensus 503 ~DgtIklWDl~~~~~~~~~l~~~~~---i~t~~-~~~~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~ 577 (606)
.|++|++||+....... .....+ +..+. |...|.+++|+|+ +.++++++.||+|++||++++..+.... +|.
T Consensus 116 ~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-~~~ 192 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEA--KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-PST 192 (434)
T ss_dssp TEEEEEEEEHHHHHCTT--CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-CGG
T ss_pred CCceEEEEEccccccCC--cCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-CCC
Confidence 99999999987531000 000112 23333 3567999999998 7899999999999999999987766666 689
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 578 EPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 578 ~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..|++++|+|+|.+ +++|+.|++|+.
T Consensus 193 ~~v~~v~wspdg~~-lasgs~dg~v~i 218 (434)
T 2oit_A 193 VAVTSVCWSPKGKQ-LAVGKQNGTVVQ 218 (434)
T ss_dssp GCEEEEEECTTSSC-EEEEETTSCEEE
T ss_pred CceeEEEEcCCCCE-EEEEcCCCcEEE
Confidence 99999999999885 789999999875
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.4e-14 Score=147.47 Aligned_cols=149 Identities=11% Similarity=0.101 Sum_probs=125.0
Q ss_pred eeEEEEcCCCCCEEEEEe--------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 440 PRQFEYNPSNPSLMAFGT--------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs--------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
+.+++|+| +++++++++ .||.|++||+.+++..... .|...+.+++|+|++...+++++.|+.|++||
T Consensus 256 ~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 256 PRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI---GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp EEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE---EEEECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred ceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec---cCCCCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence 77899999 888999888 5899999999988876654 55568999999995545678889999999999
Q ss_pred CCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC---------------CCcEEEEECCCCceeEEEcCCC
Q 035500 512 LNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY---------------SKNVALYDINTEKPLQLFTDMH 576 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~---------------Dg~I~IWDlrt~k~v~~l~~gH 576 (606)
+.+ ...+..+.+...+.+++|+|+++++++++. ||.|++||+.+++.+..+. +
T Consensus 332 ~~~----------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~- 399 (433)
T 3bws_A 332 LKE----------KKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-A- 399 (433)
T ss_dssp TTT----------TEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-C-
T ss_pred CCC----------CcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-C-
Confidence 987 345666777778999999999998888876 5799999999999988888 3
Q ss_pred CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 577 REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 577 ~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
...+.+++|+|++.+++++++.|+.|+.
T Consensus 400 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 400 GNQPTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp SSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred CCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence 4689999999999987666667999875
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-14 Score=148.01 Aligned_cols=149 Identities=8% Similarity=-0.005 Sum_probs=108.9
Q ss_pred eeEEEEcCCC----CCEEEEEe--------------------CCCcEEEEEC-CCCceEEEEeccCCCCCEEEEEEee--
Q 035500 440 PRQFEYNPSN----PSLMAFGT--------------------LDGEVIVINH-ENGNVACYIPSIGGTNSVLGLCWLK-- 492 (606)
Q Consensus 440 V~slafsP~d----g~~LaSGs--------------------~DGtVrIWDi-~tg~~v~~~~~~gH~~~V~~L~fsp-- 492 (606)
|++++++| + ++++++++ .|++|++|++ ++|+.+.... +|...+..++|++
T Consensus 114 v~sla~sp-d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~--~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 114 IRALFCSS-DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF--LMPPEETILTFAEVQ 190 (356)
T ss_dssp EEEECC-------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE--ECCCSSCEEEEEEEE
T ss_pred eEEEEECC-CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeec--cCCCceeeEEeeccC
Confidence 56667777 5 55666544 3899999998 4477666555 6766777777776
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-C---CCeEEEEEccCCCEE------------EEEeCCC
Q 035500 493 KYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD-F---EQLTSVHVNSTDDQF------------LASGYSK 556 (606)
Q Consensus 493 ~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~-~---~~V~sV~~sp~g~~L------------aSgs~Dg 556 (606)
.++..|+|||.|++|++||+.+ .+++.++.+ + ..+.+++|+|+|.++ ++|+.|+
T Consensus 191 g~~~~LaSgS~D~TIkIWDl~T----------Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 191 GMQEALLGTTIMNNIVIWNLKT----------GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp TSTTEEEEEETTSEEEEEETTT----------CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred CCCceEEEecCCCcEEEEECCC----------CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 3568999999999999999998 456777763 2 247888999999876 6788999
Q ss_pred cEEEEECCCCceeEEE----cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 557 NVALYDINTEKPLQLF----TDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 557 ~I~IWDlrt~k~v~~l----~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+|++||..+++.+..+ +.+|...+.+..++ +. ++|+|+.|++||.
T Consensus 261 tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkI 309 (356)
T 2w18_A 261 QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAI 309 (356)
T ss_dssp EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEE
T ss_pred EEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEE
Confidence 9999999999987765 34787776655554 54 6899999999985
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-12 Score=136.38 Aligned_cols=143 Identities=17% Similarity=0.106 Sum_probs=111.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCC---cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEE-EEECCCe--EEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG---EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLV-AGSDSGC--VRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG---tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~La-SgS~Dgt--IklWDl~ 513 (606)
+.+++|+| +++.+|+++.|+ +|++||+.+++... ..+|.+.+.+++|+| ++..|+ +++.|+. |++||+.
T Consensus 181 v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~---l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~ 255 (415)
T 2hqs_A 181 LMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQ---VASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLA 255 (415)
T ss_dssp EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEE---EECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT
T ss_pred ceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEE---eecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECC
Confidence 78899999 999999999886 99999999988753 237788999999999 556665 7777665 9999998
Q ss_pred CCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeC-CC--cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGY-SK--NVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~-Dg--~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
++ .. ..+. +...+.+++|+|+|+.+++++. ++ .|.+||+.+++. ..+. .|...+.+++|+|+|
T Consensus 256 ~~----------~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~-~~~~~~~~~~~spdG 322 (415)
T 2hqs_A 256 SG----------QI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRIT-WEGSQNQDADVSSDG 322 (415)
T ss_dssp TC----------CE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECC-CSSSEEEEEEECTTS
T ss_pred CC----------CE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEe-cCCCcccCeEECCCC
Confidence 73 22 3333 4456999999999998888876 44 677889988764 3444 467789999999999
Q ss_pred CeEEEEEeCCC
Q 035500 590 PLCLLLLHLTT 600 (606)
Q Consensus 590 ~~LLaTgS~Dg 600 (606)
.++++++..++
T Consensus 323 ~~l~~~~~~~g 333 (415)
T 2hqs_A 323 KFMVMVSSNGG 333 (415)
T ss_dssp SEEEEEEECSS
T ss_pred CEEEEEECcCC
Confidence 98666665543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-12 Score=125.08 Aligned_cols=150 Identities=7% Similarity=-0.038 Sum_probs=113.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCC-CCCEEEEEEeeCCCCEEEEEE--CCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGG-TNSVLGLCWLKKYPSKLVAGS--DSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH-~~~V~~L~fsp~~~~~LaSgS--~DgtIklWDl~~~ 515 (606)
+.+++|+| +++++++++ ++.|++||+.+ ++...... +| ...+.+++|+| ++.++++++ .++..++|.+...
T Consensus 44 v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 44 FEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDT--GFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp CEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCC--TTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred eEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEecc--ccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence 78899999 999999987 88999999998 77665433 44 46788999999 668888888 4456777766542
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCC-CceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFL-ASGYSKNVALYDINT-EKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~La-Sgs~Dg~I~IWDlrt-~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
. .....+.....+..++|+|+++.++ +++.++.+++|+++. +.....+. .|...+.+++|+|++.+++
T Consensus 119 ~---------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 119 G---------GTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT-HGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp C---------CCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC-CSSSCEEEEEECTTSSEEE
T ss_pred C---------CceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc-cCCCccccceECCCCCEEE
Confidence 1 1234445555689999999999776 788899999999653 23344555 5788999999999999877
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++++.|+.++.
T Consensus 189 ~~~~~~~~~~i 199 (297)
T 2ojh_A 189 FNSSRTGQMQI 199 (297)
T ss_dssp EEECTTSSCEE
T ss_pred EEecCCCCccE
Confidence 77766776553
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-12 Score=128.07 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=114.1
Q ss_pred eeEEEEcCCCCCEEEEEeCC-CcEEEEECC--CCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD-GEVIVINHE--NGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D-GtVrIWDi~--tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~ 515 (606)
+.+++|+| +++++++++.+ +.|++|++. ++..........+ ..+.+++|+| ++..+++++ .++.|.+||+..+
T Consensus 40 ~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~ 116 (343)
T 1ri6_A 40 VQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDG 116 (343)
T ss_dssp CCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECT-TSSEEEEEETTTTEEEEEEEETT
T ss_pred CceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcC-CCCEEEEEecCCCeEEEEECCCC
Confidence 67899999 89988888887 999999987 5554322222233 3788999999 556665555 5899999999521
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCC-CceeE----EEcCCCCCCeEEEEEeCCC
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG-YSKNVALYDINT-EKPLQ----LFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt-~k~v~----~l~~gH~~~I~sV~fsP~g 589 (606)
.. ...+..+.....+.+++|+|+++.+++++ .++.|.+||+.+ ++... .+.......+..++|+|++
T Consensus 117 ~~-------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 117 LP-------VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp EE-------EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred cc-------ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence 10 23445555666799999999999877777 889999999997 65432 2332234578899999999
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
.++++++..++.|+.
T Consensus 190 ~~l~~~~~~~~~i~~ 204 (343)
T 1ri6_A 190 QYAYCVNELNSSVDV 204 (343)
T ss_dssp SEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCEEEE
Confidence 988888878887764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-11 Score=129.75 Aligned_cols=136 Identities=10% Similarity=0.012 Sum_probs=104.7
Q ss_pred CCEEEEEeCC------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC---eEEEEeCCCCCCCcc
Q 035500 450 PSLMAFGTLD------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG---CVRLFDLNHIPPKVA 520 (606)
Q Consensus 450 g~~LaSGs~D------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg---tIklWDl~~~~~~~~ 520 (606)
+..++.++.+ ++|++||...+. ...+. +|...|.+++|+| ++..|++++.|+ +|++||+.++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~--~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg----- 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH--RSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANG----- 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE--EESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC-----
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC-CEEEe--CCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCC-----
Confidence 5566666654 799999998544 33333 7888999999999 678999999885 9999999874
Q ss_pred cccCCcceEEeecCCCeEEEEEccCCCEEE-EEeCCCc--EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 521 DARGNSSVATYYDFEQLTSVHVNSTDDQFL-ASGYSKN--VALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 521 ~l~~~~~i~t~~~~~~V~sV~~sp~g~~La-Sgs~Dg~--I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.......+...+.+++|+|+|+.++ +++.|+. |++||+++++. ..+. .|...+.+++|+|+|.++++++.
T Consensus 214 -----~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~-~~~~~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 214 -----AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVT-DGRSNNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp -----CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECC-CCSSCEEEEEECTTSSEEEEEEC
T ss_pred -----cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCc-CCCCcccceEECCCCCEEEEEEC
Confidence 2333333556799999999999777 6666654 99999998876 4555 58889999999999998666665
Q ss_pred CCCe
Q 035500 598 LTTM 601 (606)
Q Consensus 598 ~Dgt 601 (606)
.++.
T Consensus 287 ~~g~ 290 (415)
T 2hqs_A 287 QAGR 290 (415)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 5654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-11 Score=134.90 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=122.8
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC--CCCCCCcccc
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL--NHIPPKVADA 522 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl--~~~~~~~~~l 522 (606)
++| ++.++++++.|++|.+||..+++.+..+.. +|. +++++|+| +++++++++.|++|.+||+ .+
T Consensus 145 ~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~--~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t-------- 211 (543)
T 1nir_A 145 LDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYA--VHISRMSA-SGRYLLVIGRDARIDMIDLWAKE-------- 211 (543)
T ss_dssp CCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEEC-STT--EEEEEECT-TSCEEEEEETTSEEEEEETTSSS--------
T ss_pred cCC-CCEEEEEEcCCCeEEEEECCCceEEEEEec-Ccc--cceEEECC-CCCEEEEECCCCeEEEEECcCCC--------
Confidence 788 778999999999999999999999887763 443 89999999 6789999999999999999 44
Q ss_pred cCCcceEEeecCCCeEEEEEcc----CCCEEEEEeC-CCcEEEEECCCCceeEEEcCC---------CC-CCeEEEEEeC
Q 035500 523 RGNSSVATYYDFEQLTSVHVNS----TDDQFLASGY-SKNVALYDINTEKPLQLFTDM---------HR-EPINVAKFSH 587 (606)
Q Consensus 523 ~~~~~i~t~~~~~~V~sV~~sp----~g~~LaSgs~-Dg~I~IWDlrt~k~v~~l~~g---------H~-~~I~sV~fsP 587 (606)
...+.++.+...+..++|+| +|+++++++. +++|.+||..+++++..+... |. ..+..+.++|
T Consensus 212 --~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 212 --PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp --CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred --CcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence 34566777666789999999 9999998884 899999999999998887621 22 3789999999
Q ss_pred CCCeEEEEEeCCCeEEE
Q 035500 588 HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIRc 604 (606)
+++.++++...++.|..
T Consensus 290 ~~~~~~vs~~~~g~i~v 306 (543)
T 1nir_A 290 EHPEFIVNVKETGKVLL 306 (543)
T ss_dssp SSSEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCeEEE
Confidence 99999999999988753
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=9e-11 Score=119.54 Aligned_cols=153 Identities=9% Similarity=-0.011 Sum_probs=118.4
Q ss_pred eeEEEEcCCCCCE-EEEEeCCCcEEEEECCCCceEEEEeccCCCC-------CEEEEEEeeCCCCEEEEEE--CCCeEEE
Q 035500 440 PRQFEYNPSNPSL-MAFGTLDGEVIVINHENGNVACYIPSIGGTN-------SVLGLCWLKKYPSKLVAGS--DSGCVRL 509 (606)
Q Consensus 440 V~slafsP~dg~~-LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~-------~V~~L~fsp~~~~~LaSgS--~DgtIkl 509 (606)
+..++|+| ++++ ++++..++.|.+||..+++....+....... .+.+++|+|+ ++.++.++ .++.|.+
T Consensus 91 ~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 91 PFGATINN-TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA-TNTVYISGIGKESVIWV 168 (353)
T ss_dssp CCSEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETT-TTEEEEEEESSSCEEEE
T ss_pred cceEEECC-CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCC-CCEEEEEecCCCceEEE
Confidence 56788999 7774 4555668999999999999887766421111 2789999994 56555554 5889999
Q ss_pred EeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC---CCCCCeEEEEE
Q 035500 510 FDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD---MHREPINVAKF 585 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~---gH~~~I~sV~f 585 (606)
||..+ ...+..+. ....+.+++|+|+++.+++++.++.|.+||..+++.+..+.. ++...+..++|
T Consensus 169 ~d~~~----------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 169 VDGGN----------IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp EETTT----------TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred EcCCC----------CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence 99987 34455665 344588999999999999999999999999999998877763 25567889999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|++.++++++..++.|..
T Consensus 239 s~dg~~l~~~~~~~~~v~~ 257 (353)
T 3vgz_A 239 DTARQRAFITDSKAAEVLV 257 (353)
T ss_dssp ETTTTEEEEEESSSSEEEE
T ss_pred CCCCCEEEEEeCCCCEEEE
Confidence 9999988888777777754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-11 Score=119.91 Aligned_cols=146 Identities=14% Similarity=0.100 Sum_probs=109.3
Q ss_pred eeEEEEcCCCCCEEE-EEeCCCcEEEEEC--CCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMA-FGTLDGEVIVINH--ENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~La-SGs~DGtVrIWDi--~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~ 515 (606)
+..++|+| ++++++ +++.|+.++||++ .++... ....|...+.+++|+| ++..++.++ .|+.+++|++...
T Consensus 131 ~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~ 205 (297)
T 2ojh_A 131 SYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVET---RLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVD 205 (297)
T ss_dssp EEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT
T ss_pred ccceEECC-CCCEEEEEECCCCceEEEEEECCCCcce---EcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCC
Confidence 56789999 888777 7889999999995 344432 2347788899999999 556666555 6999999998742
Q ss_pred CCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCC-----------CcEEEEECCCCce--eEEEcCCCCCCeE
Q 035500 516 PPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYS-----------KNVALYDINTEKP--LQLFTDMHREPIN 581 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~D-----------g~I~IWDlrt~k~--v~~l~~gH~~~I~ 581 (606)
. ..+..+.. ...+.+++|+|+++++++++.+ +.|.+||+.+++. +..+. +|...+.
T Consensus 206 ~---------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~ 275 (297)
T 2ojh_A 206 G---------SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-GGQGTMN 275 (297)
T ss_dssp S---------SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-ESTTTSC
T ss_pred C---------CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-CCCcccc
Confidence 1 23344443 3458899999999998888765 5699999998866 33444 5888999
Q ss_pred EEEEeCCCCeEEEEEeCCC
Q 035500 582 VAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 582 sV~fsP~g~~LLaTgS~Dg 600 (606)
.++|+|++.++++++..++
T Consensus 276 ~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 276 SPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp SCCBCTTSSEEEEEEECCC
T ss_pred cceECCCCCEEEEEEeccC
Confidence 9999999998766666554
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=137.76 Aligned_cols=147 Identities=12% Similarity=0.073 Sum_probs=110.5
Q ss_pred eeEEEEcCCCCCEEEEEeC-CC-----cEEEEECCCCceEEEEeccCCC----------------------CCEEEEEEe
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DG-----EVIVINHENGNVACYIPSIGGT----------------------NSVLGLCWL 491 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DG-----tVrIWDi~tg~~v~~~~~~gH~----------------------~~V~~L~fs 491 (606)
+.+++|+| ||+++++++. || +|++||+.+++........++. ..|.+++|+
T Consensus 39 ~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 39 LMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 77899999 9999999998 88 9999999999877665533333 237899999
Q ss_pred eCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE
Q 035500 492 KKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQL 571 (606)
Q Consensus 492 p~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~ 571 (606)
| ++++|++++. ++|.+||+.++.. ........+...+.+++|+|+|++++.++. +.|++||+.+++....
T Consensus 118 p-Dg~~l~~~~~-~~i~~~d~~~~~~-------~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 118 P-DAQRLLFPLG-GELYLYDLKQEGK-------AAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL 187 (741)
T ss_dssp T-TSSEEEEEET-TEEEEEESSSCST-------TSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred C-CCCEEEEEeC-CcEEEEECCCCCc-------ceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence 9 6788888886 9999999987410 011111223456999999999999999885 6999999998877655
Q ss_pred EcCCCCCC----------------eEEEEEeCCCCeEEEEEeCC
Q 035500 572 FTDMHREP----------------INVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 572 l~~gH~~~----------------I~sV~fsP~g~~LLaTgS~D 599 (606)
.. .+... +..++|+|+|++++ +++.|
T Consensus 188 ~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~-~~~~d 229 (741)
T 2ecf_A 188 TA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA-YARID 229 (741)
T ss_dssp CC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE-EEEEE
T ss_pred cc-CCccceeccccceeeeeccccccceEECCCCCEEE-EEEEc
Confidence 44 33332 47899999999754 44444
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-10 Score=117.11 Aligned_cols=148 Identities=9% Similarity=0.059 Sum_probs=116.5
Q ss_pred eeEEEEcCCCCCEEEEEe--CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGT--LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs--~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
+..++|+| +++++++++ .++.|.+||..+++....+. .+...+.+++|+| ++..+++++.++.|.+||..+.
T Consensus 143 ~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~-- 216 (353)
T 3vgz_A 143 PRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQ--NTGKMSTGLALDS-EGKRLYTTNADGELITIDTADN-- 216 (353)
T ss_dssp EEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEEC--CCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTT--
T ss_pred CceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEec--CCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCC--
Confidence 67889999 888777765 48999999999998887665 3445588899998 5678888999999999999873
Q ss_pred CcccccCCcceEEeec-----CCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 518 KVADARGNSSVATYYD-----FEQLTSVHVNSTDDQFLASG-YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-----~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
..+..+.. ...+.+++|+|+++.++.++ .++.|.+||+.+++.+..+..++ ...++|+|++.+
T Consensus 217 --------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~ 285 (353)
T 3vgz_A 217 --------KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNE 285 (353)
T ss_dssp --------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTE
T ss_pred --------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCE
Confidence 33333332 23478899999998666665 45999999999999988887432 256999999998
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
+++++..++.|..
T Consensus 286 l~v~~~~~~~v~~ 298 (353)
T 3vgz_A 286 AYVTHRQAGKVSV 298 (353)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCeEEE
Confidence 8888888887764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-10 Score=119.88 Aligned_cols=155 Identities=8% Similarity=0.023 Sum_probs=109.9
Q ss_pred eeEEEEcCCCCCEEEEEeC---CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL---DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~---DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~ 515 (606)
+..++|+| +++ +++++. ++.|++||+.++..........+...+..++|+| ++.++++++ .+++|.+||+...
T Consensus 42 p~~~a~sp-dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 42 PTYLALSA-KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp CCCEEECT-TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEcc-CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCC
Confidence 66789999 887 554443 6899999998776433222235667789999999 567777777 7899999999742
Q ss_pred CCCcccccCCcceEEeecC----------CCeEEEEEccCCCEEEEEeCCCcEEEEECC-CCcee--EEEcCCCCCCeEE
Q 035500 516 PPKVADARGNSSVATYYDF----------EQLTSVHVNSTDDQFLASGYSKNVALYDIN-TEKPL--QLFTDMHREPINV 582 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~----------~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr-t~k~v--~~l~~gH~~~I~s 582 (606)
.. ...+..+... ..+.+++|+|+|+++++...++.|.+||+. +++.. ..+.......+..
T Consensus 119 g~-------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 119 GA-------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp SC-------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred CC-------eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 11 1122233221 238899999999977777778999999999 55432 2233223347888
Q ss_pred EEEeCCCCeEEEEEeCCCeEEE
Q 035500 583 AKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~DgtIRc 604 (606)
++|+|+|+++++++..++.|+.
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEE
Confidence 9999999988888888887754
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-10 Score=115.42 Aligned_cols=147 Identities=10% Similarity=0.052 Sum_probs=110.5
Q ss_pred EEEEcCCCCCEEEEEeC-CCcEEEEECCCCce-EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC---eEEEEeCCCCC
Q 035500 442 QFEYNPSNPSLMAFGTL-DGEVIVINHENGNV-ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG---CVRLFDLNHIP 516 (606)
Q Consensus 442 slafsP~dg~~LaSGs~-DGtVrIWDi~tg~~-v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg---tIklWDl~~~~ 516 (606)
.++|+| +++++++++. ++.|++||..+++. ...+. .+..+..+++|+| ++.+++++..++ .|.+||+..
T Consensus 44 ~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~-- 117 (331)
T 3u4y_A 44 DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ--EGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLK-- 117 (331)
T ss_dssp EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEE--ECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTT--
T ss_pred eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEecc--cCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCC--
Confidence 889999 8886666555 89999999999887 55443 4555555599999 567777555553 999999987
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCC-EEEEEeCCCc-EEEEECCCCcee-----EEEcCCCCCCeEEEEEeCCC
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDD-QFLASGYSKN-VALYDINTEKPL-----QLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~-~LaSgs~Dg~-I~IWDlrt~k~v-----~~l~~gH~~~I~sV~fsP~g 589 (606)
...+..+.......+++|+|+|+ +++++..++. |.+|++.....+ ..+. +......++|+|+|
T Consensus 118 --------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~spdg 187 (331)
T 3u4y_A 118 --------NKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--GGTRPFNITFTPDG 187 (331)
T ss_dssp --------TEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--SSSSEEEEEECTTS
T ss_pred --------CCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--CCCCccceEECCCC
Confidence 34556666666789999999997 5555566688 999999864332 2222 34668999999999
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
+++++++..++.|+.
T Consensus 188 ~~l~v~~~~~~~v~v 202 (331)
T 3u4y_A 188 NFAFVANLIGNSIGI 202 (331)
T ss_dssp SEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCeEEE
Confidence 988888888888764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-10 Score=116.56 Aligned_cols=156 Identities=8% Similarity=0.045 Sum_probs=106.7
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~~~ 517 (606)
+..++|+| +++++++++. ++.|.+||+..+..............+.+++|+| ++..+++++ .|+.|.+||+.....
T Consensus 86 ~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 86 LTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CcEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCc
Confidence 67899999 8887766654 8999999995333222222223344688999999 556666666 899999999986211
Q ss_pred CcccccCCcceE--Eee--cCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCC--Cce--eEEEc---CCC--CCCeEEE
Q 035500 518 KVADARGNSSVA--TYY--DFEQLTSVHVNSTDDQFLAS-GYSKNVALYDINT--EKP--LQLFT---DMH--REPINVA 583 (606)
Q Consensus 518 ~~~~l~~~~~i~--t~~--~~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt--~k~--v~~l~---~gH--~~~I~sV 583 (606)
..... ... ....+.+++|+|++++++++ ..++.|.+||+.. ++. ...+. .+| ...+..+
T Consensus 164 -------~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 164 -------LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp -------EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred -------eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 01111 222 23468899999999966555 4789999999964 433 22222 111 2457789
Q ss_pred EEeCCCCeEEEEEeCCCeEEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIRc 604 (606)
+|+|++.+++++++.|+.|+.
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEecCCCEEEE
Confidence 999999988888888888764
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.4e-12 Score=118.74 Aligned_cols=145 Identities=23% Similarity=0.327 Sum_probs=118.0
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+.. +.++...-..-+.|+|++|+|..+..++.+++|.+|+|+ .|.|+.++++.|..+|+|+.|.+
T Consensus 19 ~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECC-SSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECC-CCcccccCcchhhcCCCCCEEEC
Confidence 368999999976652 344444333678899999999999989999999999999 88999999888999999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhc
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLR 259 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (606)
.+|+|..+ ..+..+..+|+|+.
T Consensus 96 ~~N~i~~~-~~~~~l~~l~~L~~--------------------------------------------------------- 117 (176)
T 1a9n_A 96 TNNSLVEL-GDLDPLASLKSLTY--------------------------------------------------------- 117 (176)
T ss_dssp CSCCCCCG-GGGGGGGGCTTCCE---------------------------------------------------------
T ss_pred CCCcCCcc-hhhHhhhcCCCCCE---------------------------------------------------------
Confidence 99999765 22334556666654
Q ss_pred ccchhhhhccCCCCCCCcceecccccCCCCCCCCcccccccccchhhhhhhccCCCCcccchhhHHHHHhhCCCceeccC
Q 035500 260 TMNLMELSSCLSPNLNGHAEMLDEVNDSNEFPGGAHKQDLMDANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDN 339 (606)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~L~~~l~~~~npi~~~~~YReyvI~~Lp~LkvLD~ 339 (606)
+.+.+||++..+.||.+++..+|+|+.+|.
T Consensus 118 --------------------------------------------------L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 118 --------------------------------------------------LCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp --------------------------------------------------EECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred --------------------------------------------------EEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 446678888889999999999999999999
Q ss_pred CCCCcchHHHHHHHhh
Q 035500 340 LPIGRLDREIAKSVFA 355 (606)
Q Consensus 340 ~~i~~~eRe~A~~ifS 355 (606)
......+|..|...|.
T Consensus 148 ~~n~~~~~~~~~~~~~ 163 (176)
T 1a9n_A 148 QKVKLKERQEAEKMFK 163 (176)
T ss_dssp EECCHHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHHHHh
Confidence 9999999988887665
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-10 Score=116.86 Aligned_cols=144 Identities=11% Similarity=0.030 Sum_probs=107.8
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCCCCCccccc
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~~~~~~~l~ 523 (606)
|.+.....+++++.+++|++||..+++....+. .+...+ +++|+|+ +..+++++ .++.|.+||..++.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~------- 73 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT--LGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIETQLEP------- 73 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE--CCCCEE-EEEECSS-SCEEEEEESTTCEEEEEECSSSS-------
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEE--ccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEECCCCc-------
Confidence 555355568888899999999999999887665 344556 9999994 55555554 58999999998742
Q ss_pred CCcceEEeecCCCeEE-EEEccCCCEEEEEeCCC---cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 524 GNSSVATYYDFEQLTS-VHVNSTDDQFLASGYSK---NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 524 ~~~~i~t~~~~~~V~s-V~~sp~g~~LaSgs~Dg---~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.....+..+..... ++|+|++++++++..++ .|.+||+.+++.+..+. +......++|+|+|.++++++..+
T Consensus 74 --~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 74 --PKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp --CEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETT
T ss_pred --eeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCC
Confidence 11445554444444 99999999888555553 89999999999988887 345679999999999888888876
Q ss_pred Ce-EE
Q 035500 600 TM-SR 603 (606)
Q Consensus 600 gt-IR 603 (606)
+. ++
T Consensus 150 ~~~i~ 154 (331)
T 3u4y_A 150 ANTVR 154 (331)
T ss_dssp TTEEE
T ss_pred CceEE
Confidence 66 65
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-10 Score=128.09 Aligned_cols=148 Identities=7% Similarity=-0.025 Sum_probs=118.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEC--CCCceEEEEeccCCCCCEEEEEEee----CCCCEEEEEE-CCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINH--ENGNVACYIPSIGGTNSVLGLCWLK----KYPSKLVAGS-DSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi--~tg~~v~~~~~~gH~~~V~~L~fsp----~~~~~LaSgS-~DgtIklWDl 512 (606)
+..++|+| +++++++++.|++|++||+ .+++.+..+. +...+.+++|+| + +.++++++ .+++|.+||.
T Consensus 181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---~g~~p~~va~sp~~~~d-g~~l~v~~~~~~~v~v~D~ 255 (543)
T 1nir_A 181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---IGIEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDG 255 (543)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEE---CCSEEEEEEECCSTTCT-TTEEEEEEEESSEEEEEET
T ss_pred cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEe---cCCCcceEEeCCCcCCC-CCEEEEEEccCCeEEEEec
Confidence 56889999 9999999999999999999 8888877665 344689999998 5 46777777 5899999998
Q ss_pred CCCCCCcccccCCcceEEeec------------CCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeE--EEcCCCC
Q 035500 513 NHIPPKVADARGNSSVATYYD------------FEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQ--LFTDMHR 577 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~------------~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~--~l~~gH~ 577 (606)
.+. .++.++.. ...+.++.++|++. ++++...++.|.+||..+.+.+. .+. +.
T Consensus 256 ~t~----------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~~ 323 (543)
T 1nir_A 256 ETL----------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AA 323 (543)
T ss_dssp TTC----------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--CC
T ss_pred ccc----------ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--cC
Confidence 873 34444432 22589999999875 66677788999999999876544 443 56
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 578 EPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 578 ~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+..+.|+|+++++++++..|++|+.
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred cCccCceECCCCCEEEEEecCCCeEEE
Confidence 778899999999998888888888764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-10 Score=115.61 Aligned_cols=156 Identities=8% Similarity=0.058 Sum_probs=109.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC-CCceEEEEeccC-CCCCEEEEEEeeCCCC-EEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE-NGNVACYIPSIG-GTNSVLGLCWLKKYPS-KLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~-tg~~v~~~~~~g-H~~~V~~L~fsp~~~~-~LaSgS~DgtIklWDl~~~~ 516 (606)
+.+++|+| ++++++++..++.|++|++. +++......... ....+..++|+| ++. .++++..++.|.+|++....
T Consensus 143 ~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~ 220 (347)
T 3hfq_A 143 IHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQT 220 (347)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCC
Confidence 67899999 88877777789999999998 555433222112 233678899999 456 45556788999999987521
Q ss_pred CCcccccCCcceEEeec-------CCCeEEEEEccCCCEE-EEEeCCCcEEEEECCC-C--ceeEEEcCCCCCCeEEEEE
Q 035500 517 PKVADARGNSSVATYYD-------FEQLTSVHVNSTDDQF-LASGYSKNVALYDINT-E--KPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~-------~~~V~sV~~sp~g~~L-aSgs~Dg~I~IWDlrt-~--k~v~~l~~gH~~~I~sV~f 585 (606)
.. ...+..... ...+..++|+|+|+++ ++...++.|.+||+.. + +.+..+. .|...+..++|
T Consensus 221 g~------~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~ 293 (347)
T 3hfq_A 221 GA------FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDL 293 (347)
T ss_dssp TE------EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEE
T ss_pred Cc------eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEE
Confidence 10 011222221 1348899999999966 5666789999999973 2 4455666 46677899999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|+++++++++..++.|+.
T Consensus 294 spdg~~l~v~~~~~~~v~v 312 (347)
T 3hfq_A 294 DPTEAFVVVVNQNTDNATL 312 (347)
T ss_dssp CTTSSEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEcCCCcEEE
Confidence 9999987777777677754
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=131.98 Aligned_cols=144 Identities=9% Similarity=0.067 Sum_probs=107.5
Q ss_pred eeEEEEcCCCCCEEEEEeCC---------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
|.+++||| ||++||+++.+ +.+++||+.+++........+|...+..++|+| ++..|+.++. +.|++|
T Consensus 63 v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 63 AIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp CSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEE
T ss_pred cceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECC-CCCEEEEEEC-CeEEEE
Confidence 77899999 99999999875 788899999887633222235556688999999 5678888876 799999
Q ss_pred eCCCCCCCcccccCCcceEEeec-CC------------------CeEEEEEccCCCEEEEEeCCC---------------
Q 035500 511 DLNHIPPKVADARGNSSVATYYD-FE------------------QLTSVHVNSTDDQFLASGYSK--------------- 556 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~-~~------------------~V~sV~~sp~g~~LaSgs~Dg--------------- 556 (606)
|+.++. ....... .. .+.+++|+|+|+.|++++.|+
T Consensus 140 ~~~~g~----------~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 140 AHVGKQ----------AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp SSSSSC----------CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred ECCCCc----------eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 998742 2222221 22 237899999999999887553
Q ss_pred -------------------cEEEEECCCCceeEEEcCC-----CCCCeEEEEEeCCCCeEEEEE
Q 035500 557 -------------------NVALYDINTEKPLQLFTDM-----HREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 557 -------------------~I~IWDlrt~k~v~~l~~g-----H~~~I~sV~fsP~g~~LLaTg 596 (606)
.|++||+.+++....+... |...+..++|+|+|+.+++..
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 273 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL 273 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence 7999999998866666521 267899999999998654443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-11 Score=137.14 Aligned_cols=142 Identities=11% Similarity=0.035 Sum_probs=106.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCC---CEEEEEEeeCCCCEEEEEECC---------CeE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTN---SVLGLCWLKKYPSKLVAGSDS---------GCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~---~V~~L~fsp~~~~~LaSgS~D---------gtI 507 (606)
+.+++|+| +|+++++ +.||+|++||..+++....+. +|.. .|.+++|+| ++++|++++.+ +.+
T Consensus 19 ~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~~~~~--~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 19 DPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIE--GKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEEC--TTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEEEEec--cccccccccceEEECC-CCCEEEEEecCccceeecceeeE
Confidence 45678999 8887776 789999999999988766554 5554 499999999 67889998875 788
Q ss_pred EEEeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC-------
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP------- 579 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~------- 579 (606)
.+||+.++.. ..+..... ...+..++|+|+|+.++.++. +.|++||+.+++..+... .+...
T Consensus 94 ~~~d~~~~~~--------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~ 163 (723)
T 1xfd_A 94 VLSKIPHGDP--------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLS 163 (723)
T ss_dssp EEEESSSCCC--------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEEC
T ss_pred EEEECCCCce--------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECccc
Confidence 8999987421 01111112 233889999999999999886 799999999988776665 33333
Q ss_pred -----------eEEEEEeCCCCeEEEEE
Q 035500 580 -----------INVAKFSHHSPLCLLLL 596 (606)
Q Consensus 580 -----------I~sV~fsP~g~~LLaTg 596 (606)
+.+++|+|+|++++.++
T Consensus 164 ~~v~~ee~~~~~~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 164 DWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (723)
T ss_dssp CHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred ceeEEEEeccCcceEEECCCCCEEEEEE
Confidence 37899999999754443
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.4e-10 Score=112.51 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=102.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCC-CEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTN-SVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~-~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+++++++.+++|++||..+++....+.. ++.. .+.+++|+|++...+++++.++.|.+||+.++ ..+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~----------~~~~ 70 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG----------ETLG 70 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC----------CEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC----------CeEe
Confidence 4789999999999999999988876653 3322 47889999954344567777899999999873 2344
Q ss_pred EeecCC------CeEEEEEccCCCEEEEEe------------CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 530 TYYDFE------QLTSVHVNSTDDQFLASG------------YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 530 t~~~~~------~V~sV~~sp~g~~LaSgs------------~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
.+.... .+.+++|+|+++.+++++ .++.|.+||+.+++.+..+.. ...+..++|+|++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~ 148 (337)
T 1pby_B 71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSK 148 (337)
T ss_dssp EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSC
T ss_pred eEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCE
Confidence 444322 577899999999888886 579999999999988887773 456888999999997
Q ss_pred EEEE
Q 035500 592 CLLL 595 (606)
Q Consensus 592 LLaT 595 (606)
++++
T Consensus 149 l~~~ 152 (337)
T 1pby_B 149 LYGL 152 (337)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6655
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.7e-10 Score=114.52 Aligned_cols=155 Identities=13% Similarity=-0.007 Sum_probs=106.0
Q ss_pred eeEEEEcCCCCCEEEEEeCC------------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeE
Q 035500 440 PRQFEYNPSNPSLMAFGTLD------------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D------------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtI 507 (606)
+..++|+| +++++++++.+ +.|.+||+.+++.........+...+.+++|+|+ +. ++.++. .|
T Consensus 94 ~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~-l~~~~~--~i 168 (349)
T 1jmx_B 94 MYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD-GS-LYVAGP--DI 168 (349)
T ss_dssp SSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT-SC-EEEESS--SE
T ss_pred ccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC-Cc-EEEccC--cE
Confidence 56789999 99999998866 9999999988554332222234446889999994 45 555543 49
Q ss_pred EEEeCCCCCCCcccccCC-------------------------cce-EEe------------------------------
Q 035500 508 RLFDLNHIPPKVADARGN-------------------------SSV-ATY------------------------------ 531 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~-------------------------~~i-~t~------------------------------ 531 (606)
.+||..++.......... .+. ..+
T Consensus 169 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
T 1jmx_B 169 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 248 (349)
T ss_dssp EEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE
T ss_pred EEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec
Confidence 999987753211000000 000 000
Q ss_pred ---ecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 532 ---YDFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 532 ---~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.....+.+++|+| ++++++++ ++.|.+||+.+++.+..+.. ...+..++|+|++.++++ ++.++.|+.
T Consensus 249 ~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~-~~~~~~v~v 320 (349)
T 1jmx_B 249 EFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYL-GGTFNDLAV 320 (349)
T ss_dssp EEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEE-ESBSSEEEE
T ss_pred ccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEE-ecCCCeEEE
Confidence 0112466888999 99988888 78999999999998888873 345789999999997665 677787764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.6e-10 Score=127.76 Aligned_cols=151 Identities=14% Similarity=0.068 Sum_probs=115.2
Q ss_pred eeEEEEcCCCCCEEEEEe---------------------------------CCCcEEEEECCCCceEEEEeccCCCCCEE
Q 035500 440 PRQFEYNPSNPSLMAFGT---------------------------------LDGEVIVINHENGNVACYIPSIGGTNSVL 486 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs---------------------------------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~ 486 (606)
+.+++|+| |+++||+++ .+++|++||+.+++........+|...+.
T Consensus 183 ~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 261 (706)
T 2z3z_A 183 EKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT 261 (706)
T ss_dssp CCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE
T ss_pred CceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe
Confidence 46788999 999999998 45789999999887655433235777899
Q ss_pred EEEEeeCCCCEEEEEECCC-----eEEEEeCCCCCCCcccccCCcceEEeecC---CCeEEEEEcc--CCCEEEEEeCCC
Q 035500 487 GLCWLKKYPSKLVAGSDSG-----CVRLFDLNHIPPKVADARGNSSVATYYDF---EQLTSVHVNS--TDDQFLASGYSK 556 (606)
Q Consensus 487 ~L~fsp~~~~~LaSgS~Dg-----tIklWDl~~~~~~~~~l~~~~~i~t~~~~---~~V~sV~~sp--~g~~LaSgs~Dg 556 (606)
.++|+| ++..+++++.|+ .|.+||+.++.. ...+...... ..+.+++|+| +|+++++++.|+
T Consensus 262 ~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~-------~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 262 NLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRF-------VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp EEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCE-------EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred eEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCce-------eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 999999 668888888776 999999987411 0111111121 1246789999 999999999999
Q ss_pred cEEEEECC-CCceeEEEcCCCCCCeEE-EEEeCCCCeEEEEEeCCC
Q 035500 557 NVALYDIN-TEKPLQLFTDMHREPINV-AKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 557 ~I~IWDlr-t~k~v~~l~~gH~~~I~s-V~fsP~g~~LLaTgS~Dg 600 (606)
.+++|++. ++..+..+. .|...+.. ++|+|++..++++++.++
T Consensus 334 ~~~l~~~~~~~~~~~~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVT-KGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp SCEEEEEETTSCEEEECC-CSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred ccEEEEEECCCCEEEecC-CCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 99999887 667777777 57777877 899999998888887765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-09 Score=109.62 Aligned_cols=152 Identities=9% Similarity=0.017 Sum_probs=106.2
Q ss_pred eeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCc-------eE-----EEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCC
Q 035500 440 PRQFEYNPSNPSLMAFGT-LDGEVIVINHENGN-------VA-----CYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSG 505 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-~DGtVrIWDi~tg~-------~v-----~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~Dg 505 (606)
+.+++|+| +++++++++ .++.|++|++.... .. .... ..+...+..++|+| ++.+++.++ .++
T Consensus 157 ~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~sp-dg~~l~v~~~~~~ 233 (361)
T 3scy_A 157 LHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK-VAPGSGPRHLIFNS-DGKFAYLINEIGG 233 (361)
T ss_dssp EEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-CCTTCCEEEEEECT-TSSEEEEEETTTC
T ss_pred ceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee-cCCCCCCeEEEEcC-CCCEEEEEcCCCC
Confidence 57789999 888665554 58999999887533 21 1222 24455688999999 556666666 799
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEee----cCCCeEEEEEccCCCEEEEEeC--CCcEEEEECC--CCc--eeEEEcCC
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYY----DFEQLTSVHVNSTDDQFLASGY--SKNVALYDIN--TEK--PLQLFTDM 575 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~----~~~~V~sV~~sp~g~~LaSgs~--Dg~I~IWDlr--t~k--~v~~l~~g 575 (606)
+|.+||+..+. ...+.... +......++|+|+|++++++.. ++.|.+|++. +++ .+..+. .
T Consensus 234 ~v~v~~~~~g~--------~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~ 304 (361)
T 3scy_A 234 TVIAFRYADGM--------LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T 304 (361)
T ss_dssp EEEEEEEETTE--------EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C
T ss_pred eEEEEEecCCc--------eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C
Confidence 99999998531 11222222 1234789999999998866655 4899999996 454 344444 2
Q ss_pred CCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 576 HREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 576 H~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
...+..++|+|+|+++++++..++.|+.
T Consensus 305 -g~~~~~~~~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 305 -GIHPRNFIITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp -SSCCCEEEECTTSCEEEEEETTTTEEEE
T ss_pred -CCCCceEEECCCCCEEEEEECCCCCEEE
Confidence 4578899999999988777777787765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.14 E-value=8.5e-10 Score=111.08 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=91.5
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCceEEEEeccC---CCCCEEEEEEeeCCCCEEEEEE------------C
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHENGNVACYIPSIG---GTNSVLGLCWLKKYPSKLVAGS------------D 503 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~g---H~~~V~~L~fsp~~~~~LaSgS------------~ 503 (606)
+..++|+| +++.+ ++++.++.|.+||..+++....+.... |...+.+++|+| ++..+++++ .
T Consensus 36 ~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 36 PMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEEC
T ss_pred ccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEeccccccccccccc
Confidence 56788999 77655 566678999999999998877665322 122577899998 567777775 5
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
++.|.+||..+ ...+..+.....+.+++|+|++++++++ ++.|.+||+.+++.+..+.
T Consensus 114 ~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~ 171 (337)
T 1pby_B 114 PTRVALYDAET----------LSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp CCEEEEEETTT----------TEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCC----------CcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee
Confidence 79999999987 3345555555668889999999977777 5889999999887766554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-10 Score=125.94 Aligned_cols=142 Identities=6% Similarity=-0.052 Sum_probs=108.4
Q ss_pred EEEEcCCCCC-EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC----CeEEEEeCCCCC
Q 035500 442 QFEYNPSNPS-LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS----GCVRLFDLNHIP 516 (606)
Q Consensus 442 slafsP~dg~-~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D----gtIklWDl~~~~ 516 (606)
..+|+| +++ .+++++.++.+.+||+.+++...... +.. .+++|+| ++.++++++.| ++|++||+.++.
T Consensus 114 ~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~---~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~ 186 (582)
T 3o4h_A 114 ILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELAR---LPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGG 186 (582)
T ss_dssp EEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEE---ESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCC
T ss_pred eeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEeec---CCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCC
Confidence 457888 553 34444444555699999887655432 222 7899999 67889988877 789999988742
Q ss_pred CCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCC--cEEEEECCCCceeEEEcCCCCCCeEEEE--------E
Q 035500 517 PKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSK--NVALYDINTEKPLQLFTDMHREPINVAK--------F 585 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg--~I~IWDlrt~k~v~~l~~gH~~~I~sV~--------f 585 (606)
. ..+. +...+.+++|+|+|+.+++++.++ .|++||+.+++.. .+. +|...+..+. |
T Consensus 187 ----------~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 253 (582)
T 3o4h_A 187 ----------L-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE-LPSKDFSSYRPTAITWLGY 253 (582)
T ss_dssp ----------C-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC-CSCSHHHHHCCSEEEEEEE
T ss_pred ----------c-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc-CCCcChhhhhhccccceeE
Confidence 2 2333 445589999999999999888888 8999999998877 666 6877787777 9
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|+| .++++++.|++++.
T Consensus 254 spdg-~~~~~~~~~g~~~l 271 (582)
T 3o4h_A 254 LPDG-RLAVVARREGRSAV 271 (582)
T ss_dssp CTTS-CEEEEEEETTEEEE
T ss_pred cCCC-cEEEEEEcCCcEEE
Confidence 9999 68999999998875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=132.67 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=102.6
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCC---CEEEEEEeeCCCCEEEEEEC---------CCeEEE
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTN---SVLGLCWLKKYPSKLVAGSD---------SGCVRL 509 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~---~V~~L~fsp~~~~~LaSgS~---------DgtIkl 509 (606)
+++|+| ++.+++ ++.||+|++||..+++...... +|.. .+.+++|+| ++++|++++. |++|++
T Consensus 20 ~~~~s~-dg~~~~-~~~d~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWIS-GQEYLH-QSADNNIVLYNIETGQSYTILS--NRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESS-SSEEEE-ECTTSCEEEEESSSCCEEEEEC--HHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECC-CCeEEE-EcCCCCEEEEEcCCCcEEEEEc--cccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEE
Confidence 457999 886555 4569999999999988766543 3322 488999999 6788888876 799999
Q ss_pred EeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCe---------
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPI--------- 580 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I--------- 580 (606)
||+.++.. +........+.+++|+|+|+.++.++ ++.|++||+.+++..+....++...|
T Consensus 95 ~d~~~g~~----------~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~ 163 (719)
T 1z68_A 95 YDLSNGEF----------VRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY 163 (719)
T ss_dssp EETTTTEE----------CCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred EECCCCcc----------ccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence 99987421 00001124588899999999999886 68999999998877554433444433
Q ss_pred --------EEEEEeCCCCeEEEEEeCC
Q 035500 581 --------NVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 581 --------~sV~fsP~g~~LLaTgS~D 599 (606)
.+++|+|+|+++ ++++.|
T Consensus 164 ~ee~~~~~~~~~wSPDG~~l-a~~~~d 189 (719)
T 1z68_A 164 EEEMLATKYALWWSPNGKFL-AYAEFN 189 (719)
T ss_dssp HHHTTCSSCCEEECTTSSEE-EEEEEE
T ss_pred eeecccCcccEEECCCCCEE-EEEEEC
Confidence 489999999974 455443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.3e-10 Score=114.05 Aligned_cols=136 Identities=8% Similarity=0.060 Sum_probs=102.3
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccccc
Q 035500 444 EYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 444 afsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~ 523 (606)
++++ ++.++++++.+++|++||..+++....+.. +....+..++|+|++...+++++.++.|.+||+.++
T Consensus 6 ~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~-------- 75 (349)
T 1jmx_B 6 ALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-------- 75 (349)
T ss_dssp CCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT--------
T ss_pred cccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEec-CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC--------
Confidence 4666 788999999999999999999988876653 222357889999854334566678999999999873
Q ss_pred CCcceEEeecC-------CCeEEEEEccCCCEEEEEeCC------------CcEEEEECCCCc---eeEEEcCCCCCCeE
Q 035500 524 GNSSVATYYDF-------EQLTSVHVNSTDDQFLASGYS------------KNVALYDINTEK---PLQLFTDMHREPIN 581 (606)
Q Consensus 524 ~~~~i~t~~~~-------~~V~sV~~sp~g~~LaSgs~D------------g~I~IWDlrt~k---~v~~l~~gH~~~I~ 581 (606)
..+..+... ..+.+++|+|+|+++++++.+ +.|.+||+.+++ .+..+. +...+.
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~ 151 (349)
T 1jmx_B 76 --KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVY 151 (349)
T ss_dssp --EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCC
T ss_pred --cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCccc
Confidence 334444422 127889999999999888865 899999999854 344555 345788
Q ss_pred EEEEeCCCCeEEE
Q 035500 582 VAKFSHHSPLCLL 594 (606)
Q Consensus 582 sV~fsP~g~~LLa 594 (606)
+++|+|++. +++
T Consensus 152 ~~~~s~dg~-l~~ 163 (349)
T 1jmx_B 152 LMRAADDGS-LYV 163 (349)
T ss_dssp CEEECTTSC-EEE
T ss_pred ceeECCCCc-EEE
Confidence 999999998 665
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.4e-10 Score=126.87 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=110.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCC---------------------------------cEEEEECCC-CceEEEEeccCCCCCE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG---------------------------------EVIVINHEN-GNVACYIPSIGGTNSV 485 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG---------------------------------tVrIWDi~t-g~~v~~~~~~gH~~~V 485 (606)
+.+++||| |+++|++++.|+ .|++||+.+ ++........+|...+
T Consensus 211 ~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 289 (741)
T 2ecf_A 211 HTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYL 289 (741)
T ss_dssp CCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEE
T ss_pred ccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEE
Confidence 46789999 999999998776 889999988 7765432212577889
Q ss_pred EEEEEeeCCCCEEEEEEC-----CCeEEEEeCCCCCCCcccccCCcceEEeecCC-----CeEEEEEccCCCEEEEEeCC
Q 035500 486 LGLCWLKKYPSKLVAGSD-----SGCVRLFDLNHIPPKVADARGNSSVATYYDFE-----QLTSVHVNSTDDQFLASGYS 555 (606)
Q Consensus 486 ~~L~fsp~~~~~LaSgS~-----DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~-----~V~sV~~sp~g~~LaSgs~D 555 (606)
..++| | ++..|+.++. +..|.+||+.++ .....+..+. .+.+++|+|+|+++++++.|
T Consensus 290 ~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g----------~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 357 (741)
T 2ecf_A 290 ARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASN----------QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERT 357 (741)
T ss_dssp EEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTC----------CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTT
T ss_pred EEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCC----------ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCC
Confidence 99999 9 5677776553 678999999874 2333333222 45689999999999999999
Q ss_pred CcEEEEECC-CCceeEEEcCCCCCCeEEE-EEeCCCCeEEEEEeCCC
Q 035500 556 KNVALYDIN-TEKPLQLFTDMHREPINVA-KFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 556 g~I~IWDlr-t~k~v~~l~~gH~~~I~sV-~fsP~g~~LLaTgS~Dg 600 (606)
+.+++|.+. .++ ...+. .|...|..+ .|+|++..++++++.|+
T Consensus 358 g~~~l~~~~~~~~-~~~l~-~~~~~v~~~~~~s~dg~~l~~~~~~~~ 402 (741)
T 2ecf_A 358 GFQHLYRIDSKGK-AAALT-HGNWSVDELLAVDEKAGLAYFRAGIES 402 (741)
T ss_dssp SSCEEEEECSSSC-EEESC-CSSSCEEEEEEEETTTTEEEEEECSSC
T ss_pred CccEEEEEcCCCC-eeeee-ecceEEEeEeEEeCCCCEEEEEEeCCC
Confidence 988888776 345 66776 577888887 59999998888888775
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-10 Score=127.11 Aligned_cols=149 Identities=14% Similarity=0.191 Sum_probs=107.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-----CceEEEEeccCCCCC--------------EEEEEEeeCCCCEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-----GNVACYIPSIGGTNS--------------VLGLCWLKKYPSKLVA 500 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-----g~~v~~~~~~gH~~~--------------V~~L~fsp~~~~~LaS 500 (606)
+.+++|+| +|+.+|++ .|+.|++||+.+ ++...... .+... +.+++|+| ++.+|++
T Consensus 123 ~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~--~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~ 197 (706)
T 2z3z_A 123 TASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI--DGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAF 197 (706)
T ss_dssp CTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS--CCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEE
T ss_pred ccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEEecc--CCCCCeEcccchhhhhcCCCceEEECC-CCCEEEE
Confidence 56778999 99999995 689999999988 77654322 23222 47899999 6788888
Q ss_pred EE---------------------------------CCCeEEEEeCCCCCCCcccccCCcceEEe---ecCCCeEEEEEcc
Q 035500 501 GS---------------------------------DSGCVRLFDLNHIPPKVADARGNSSVATY---YDFEQLTSVHVNS 544 (606)
Q Consensus 501 gS---------------------------------~DgtIklWDl~~~~~~~~~l~~~~~i~t~---~~~~~V~sV~~sp 544 (606)
++ .+..|.+||+.++. ..... .+...+.+++|+|
T Consensus 198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~sp 267 (706)
T 2z3z_A 198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK----------TVYLQTGEPKEKFLTNLSWSP 267 (706)
T ss_dssp EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE----------EEECCCCSCTTCEEEEEEECT
T ss_pred EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc----------eEeeccCCCCceeEeeEEEEC
Confidence 87 45789999998742 11111 1234589999999
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCce-eEEEcCCCCC---CeEEEEEeC--CCCeEEEEEeCCCeEEE
Q 035500 545 TDDQFLASGYSK-----NVALYDINTEKP-LQLFTDMHRE---PINVAKFSH--HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 545 ~g~~LaSgs~Dg-----~I~IWDlrt~k~-v~~l~~gH~~---~I~sV~fsP--~g~~LLaTgS~DgtIRc 604 (606)
+|+.+++++.++ .|.+||+.+++. .......+.. .+..++|+| +|. ++++++.|+.+++
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l 337 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHL 337 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEE
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEE
Confidence 999999888775 899999999843 3333212222 346789999 887 5778888886654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=129.93 Aligned_cols=141 Identities=13% Similarity=0.075 Sum_probs=114.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEE-EEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVI-VINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVr-IWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+..++|+ +++.+++++.++.+. +||..+++... + .+|...+..++|+| ++.+|++++.++.|++||+.++
T Consensus 340 ~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~-l--~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg--- 410 (1045)
T 1k32_A 340 YVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEK-F--EENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETG--- 410 (1045)
T ss_dssp EEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEE-C--CCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTC---
T ss_pred EEeeeEc--CCCeEEEEECCCceEEEEECCCCCceE-e--cCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCC---
Confidence 6788898 888999999888888 99998776543 2 27888999999999 6789999999999999999873
Q ss_pred cccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEeCCC----------cEEEEECCCCceeEEEcCCCCCCeEEEEEeC
Q 035500 519 VADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASGYSK----------NVALYDINTEKPLQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 519 ~~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs~Dg----------~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP 587 (606)
...... .+...+.+++|+|+|+++++++.++ .|++||+.+++ +..+. .|...+..++|+|
T Consensus 411 -------~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~-~~~~~~~~~~~sp 481 (1045)
T 1k32_A 411 -------KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT-TENSHDYAPAFDA 481 (1045)
T ss_dssp -------CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS-CSSSBEEEEEECT
T ss_pred -------ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee-CCCcccCCceEcC
Confidence 233444 3456689999999999998887654 89999999887 56666 5888899999999
Q ss_pred CCCeEEEEEeCC
Q 035500 588 HSPLCLLLLHLT 599 (606)
Q Consensus 588 ~g~~LLaTgS~D 599 (606)
+|++++ .++.+
T Consensus 482 dG~~l~-~~s~~ 492 (1045)
T 1k32_A 482 DSKNLY-YLSYR 492 (1045)
T ss_dssp TSCEEE-EEESC
T ss_pred CCCEEE-EEecc
Confidence 999755 44443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-09 Score=130.10 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=114.3
Q ss_pred eeEEEEc-CCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCC-CEEEEEEeeCCCCEEEEEECCCeEE-EEeCCCCC
Q 035500 440 PRQFEYN-PSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTN-SVLGLCWLKKYPSKLVAGSDSGCVR-LFDLNHIP 516 (606)
Q Consensus 440 V~slafs-P~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~-~V~~L~fsp~~~~~LaSgS~DgtIk-lWDl~~~~ 516 (606)
+.+++|+ | +++.+|+++ ++.|++|+..++.... ...|.. .+..++|+ ++..+++++.++.+. +||.....
T Consensus 298 v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 298 KFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLK---VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp GGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEE---CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCC
T ss_pred cceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEE---ccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCC
Confidence 6789999 9 999999888 8899999998877543 346777 89999999 567888888888888 88987631
Q ss_pred CCcccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 517 PKVADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
...+ .+...+..++|+|+|+++++++.++.|++||+.+++...... +|...+..++|+|+|++++++
T Consensus 371 -----------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~SpDG~~la~~ 438 (1045)
T 1k32_A 371 -----------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSRFIAYG 438 (1045)
T ss_dssp -----------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEE
T ss_pred -----------ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-CCCCCccceEECCCCCeEEEE
Confidence 1222 334669999999999999999999999999999999888776 689999999999999986554
Q ss_pred Ee
Q 035500 596 LH 597 (606)
Q Consensus 596 gS 597 (606)
+.
T Consensus 439 ~~ 440 (1045)
T 1k32_A 439 FP 440 (1045)
T ss_dssp EE
T ss_pred ec
Confidence 44
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.7e-09 Score=111.40 Aligned_cols=155 Identities=6% Similarity=-0.047 Sum_probs=107.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC-CCceEEEEeccCCCCCEEEEEEeeCCCC--EEEEEE-------------C
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE-NGNVACYIPSIGGTNSVLGLCWLKKYPS--KLVAGS-------------D 503 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~-tg~~v~~~~~~gH~~~V~~L~fsp~~~~--~LaSgS-------------~ 503 (606)
+..++|+| +++++++++.+ .|.+|++. +++.........+ +.+..++|+| +++ ++++++ .
T Consensus 42 ~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 42 ISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 67889999 99999999888 99999997 7776543321111 2355688998 445 344553 6
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEee--cCCCeEEEEEccCCCEEEEEe-CCCcEEEEECC-CCcee--EEEcC-CC
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASG-YSKNVALYDIN-TEKPL--QLFTD-MH 576 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlr-t~k~v--~~l~~-gH 576 (606)
+|++.+|++...... ...+..+. +...+.+++|+|+|+++++++ .++.|++||+. +++.. ..+.. .|
T Consensus 118 ~g~v~v~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T 1jof_A 118 AGYGNVFSVSETGKL------EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp CCEEEEEEECTTCCE------EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred CceEEEEccCCCCcC------cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence 999999999752110 01122222 345699999999999887765 46899999998 67653 33331 24
Q ss_pred CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 577 REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 577 ~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
...+..++|+|+|+++++++..++.|+.
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v 219 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence 5679999999999987776666777654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.9e-08 Score=102.45 Aligned_cols=157 Identities=11% Similarity=0.134 Sum_probs=104.8
Q ss_pred eeEEEEcCCCCCEEEEEeCC----CcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD----GEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D----GtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl 512 (606)
+..++|+| +++++++++.+ |.|.+|++.. +..........+......+++ ++..+++++ .+++|.+|++
T Consensus 52 p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 52 PSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp CCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEB
T ss_pred CceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEe
Confidence 67789999 99999999886 8999998765 544332222245566778887 345665555 6889999999
Q ss_pred CCCCCCcccccCCcceEEeec---------CCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCce------e------E
Q 035500 513 NHIPPKVADARGNSSVATYYD---------FEQLTSVHVNSTDDQFLASG-YSKNVALYDINTEKP------L------Q 570 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~---------~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k~------v------~ 570 (606)
........ ........+ ...+.+++|+|+|+++++++ .++.|.+|++..... + .
T Consensus 128 ~~~g~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 128 GQDGALLP----ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp CTTSCBCS----CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred CCCCcCcc----cceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 75322100 000111111 12258899999998665554 579999999885431 1 2
Q ss_pred EEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 571 LFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 571 ~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.....+......++|+|+|+++++++..++.|+.
T Consensus 204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 237 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIA 237 (361)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEE
T ss_pred ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEE
Confidence 2232355678899999999987777767887764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.3e-10 Score=126.19 Aligned_cols=148 Identities=10% Similarity=0.099 Sum_probs=102.6
Q ss_pred eeEEEEcCCCCCEEEEEeC---------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTL---------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~---------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
+.+++||| ||++||+++. |++|++||+.+++.+..... ...+..++|+| ++..|+.++ |++|++|
T Consensus 62 ~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~ 135 (719)
T 1z68_A 62 ASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLK 135 (719)
T ss_dssp CSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEE
T ss_pred eeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECC-CCCEEEEEE-CCeEEEE
Confidence 66889999 9999999887 79999999998876321111 24588999999 567787775 7899999
Q ss_pred eCCCCCCCcccccCCcceEEeecC----------CCeEEEEEccCCCEEEEEeCCC------------------------
Q 035500 511 DLNHIPPKVADARGNSSVATYYDF----------EQLTSVHVNSTDDQFLASGYSK------------------------ 556 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~~----------~~V~sV~~sp~g~~LaSgs~Dg------------------------ 556 (606)
|+.++........ ......+.++ ....+++|+|+|+.|++++.|.
T Consensus 136 ~~~~g~~~~l~~~-~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y 214 (719)
T 1z68_A 136 QRPGDPPFQITFN-GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY 214 (719)
T ss_dssp SSTTSCCEECCCC-CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred eCCCCCcEEEecC-CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence 9987432100000 0000011111 1125899999999999987652
Q ss_pred ----------cEEEEECCCCcee--EE------EcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 557 ----------NVALYDINTEKPL--QL------FTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 557 ----------~I~IWDlrt~k~v--~~------l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
.|++||+.+++.. .. +. +|...+..++|+|++. +++++
T Consensus 215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~SpD~~-~~~~~ 270 (719)
T 1z68_A 215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA-SSDYYFSWLTWVTDER-VCLQW 270 (719)
T ss_dssp CBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH-TSCEEEEEEEESSSSE-EEEEE
T ss_pred CCCCCCCCeeEEEEEECCCCCccceeEccCCccCC-CCcceEEEeEEeCCCe-EEEEE
Confidence 7889999988753 11 23 5888899999999965 55553
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-09 Score=119.44 Aligned_cols=137 Identities=8% Similarity=-0.093 Sum_probs=106.8
Q ss_pred eEEEEcCCCCCEEEEEeCC----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC--eEEEEeCCC
Q 035500 441 RQFEYNPSNPSLMAFGTLD----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG--CVRLFDLNH 514 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~D----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg--tIklWDl~~ 514 (606)
.+++|+| ||+++|+++.| ++|++||+.+++... +.+|.+.+..++|+| ++..|+++..++ .|.+||+.+
T Consensus 153 ~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~---l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 153 FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRV---FDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEE---ECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTT
T ss_pred ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceE---eecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCC
Confidence 4678999 99999988887 889999999887653 347888899999999 678888888899 899999987
Q ss_pred CCCCcccccCCcceEEeec-CCCeEEEE--------EccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 515 IPPKVADARGNSSVATYYD-FEQLTSVH--------VNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~-~~~V~sV~--------~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
+. .. .+.. ...+.+++ |+|+|.++++++.|+++++|++ ++... .+.+.|.+++|
T Consensus 228 ~~----------~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~----~~~~~v~~~~~ 290 (582)
T 3o4h_A 228 GS----------VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE----APQGNHGRVVL 290 (582)
T ss_dssp CC----------EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC----CCSSEEEEEEE
T ss_pred Cc----------EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec----cCCCceEEEEe
Confidence 42 22 3333 23355555 9999999999999999999999 65544 24467899999
Q ss_pred eCCCCeEEEEEeCCCe
Q 035500 586 SHHSPLCLLLLHLTTM 601 (606)
Q Consensus 586 sP~g~~LLaTgS~Dgt 601 (606)
+ ++.. +++++.+.+
T Consensus 291 s-dg~~-l~~~s~~~~ 304 (582)
T 3o4h_A 291 W-RGKL-VTSHTSLST 304 (582)
T ss_dssp E-TTEE-EEEEEETTE
T ss_pred c-CCEE-EEEEcCCCC
Confidence 9 7764 566666643
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-09 Score=123.95 Aligned_cols=140 Identities=9% Similarity=0.051 Sum_probs=101.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCC-----EEEEEEeeCCCCEEEEEECC---------C
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNS-----VLGLCWLKKYPSKLVAGSDS---------G 505 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~-----V~~L~fsp~~~~~LaSgS~D---------g 505 (606)
..+++|+| ++.+++++ ||+|++||+.+++....+. +|... ..+++|+| ++.+++.++.+ +
T Consensus 19 ~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLE--NSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEEC--TTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEe--chhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccce
Confidence 44678999 88888886 9999999999998776554 55432 24588999 67888888876 5
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCe-----
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPI----- 580 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I----- 580 (606)
.+.+||+.++. ......+...+..++|||+|+.+|.++ |+.|++||+.+++..+.-..++...+
T Consensus 93 ~~~~~d~~~~~----------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~ 161 (740)
T 4a5s_A 93 SYDIYDLNKRQ----------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGIT 161 (740)
T ss_dssp EEEEEETTTTE----------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred EEEEEECCCCc----------EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence 66799999842 111112345699999999999998885 58999999998876543222343333
Q ss_pred ------------EEEEEeCCCCeEEEEE
Q 035500 581 ------------NVAKFSHHSPLCLLLL 596 (606)
Q Consensus 581 ------------~sV~fsP~g~~LLaTg 596 (606)
..+.|+|+|++|+.+.
T Consensus 162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred cccccchhcCCCcceEECCCCCEEEEEE
Confidence 3489999999754443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-08 Score=105.49 Aligned_cols=160 Identities=9% Similarity=0.005 Sum_probs=105.1
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEECC-CCceEE--EEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINHE-NGNVAC--YIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi~-tg~~v~--~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~ 514 (606)
+.+++|+| +++++++++. +++|++||+. +++... .+....|...+..++|+| +++++++++ .+++|.+|++..
T Consensus 147 ~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 147 IHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp EEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred ceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeC
Confidence 77899999 8988887764 6899999998 776543 222212456799999999 567777766 478999998764
Q ss_pred CCCCcccccCCcceEEee----cCC-------CeEEEE-EccCCCEEEEEeCC-C-----cEEEEECC-CCceeE---EE
Q 035500 515 IPPKVADARGNSSVATYY----DFE-------QLTSVH-VNSTDDQFLASGYS-K-----NVALYDIN-TEKPLQ---LF 572 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~----~~~-------~V~sV~-~sp~g~~LaSgs~D-g-----~I~IWDlr-t~k~v~---~l 572 (606)
........ ...+..+. ++. .+..++ |+|+|+++++++.+ + .|.+|++. +++... ..
T Consensus 225 ~~g~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~ 302 (365)
T 1jof_A 225 ATHMPVYT--HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS 302 (365)
T ss_dssp TTCCEEEE--EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred CCCcEEEc--cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee
Confidence 11000000 00011111 112 478999 99999987766543 2 89999996 566543 23
Q ss_pred cCCCCCCeEEEEEeC---CCCeEEEEEeCCCeEEE
Q 035500 573 TDMHREPINVAKFSH---HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP---~g~~LLaTgS~DgtIRc 604 (606)
. .+...+..++|+| +|+++++++..++.|+.
T Consensus 303 ~-~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v 336 (365)
T 1jof_A 303 P-TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI 336 (365)
T ss_dssp E-CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred e-cCCCCcccceecCCCcCCCEEEEEEcCCCeEEE
Confidence 3 3455677899999 79876555555577764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=4.7e-08 Score=97.43 Aligned_cols=147 Identities=12% Similarity=0.139 Sum_probs=111.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++++| +++++++...++.|.+||.. ++....+...++...+.+++++| ++..+++.+.++.|++||...
T Consensus 123 ~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g----- 194 (286)
T 1q7f_A 123 PRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEG----- 194 (286)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTC-----
T ss_pred ceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCC-----
Confidence 77899999 88888888889999999965 55555554335556799999998 456777778899999999754
Q ss_pred ccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCC-cEEEEECCCCceeEEEcCCCC--CCeEEEEEeCCCCeEE
Q 035500 520 ADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSK-NVALYDINTEKPLQLFTDMHR--EPINVAKFSHHSPLCL 593 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg-~I~IWDlrt~k~v~~l~~gH~--~~I~sV~fsP~g~~LL 593 (606)
..+..+... ..+.+++++|+|+++++...++ .|.+||. .++.+..+. .+. ..+..++++|+|. ++
T Consensus 195 ------~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~-~~~~~~~~~~i~~~~~g~-l~ 265 (286)
T 1q7f_A 195 ------QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE-SKVKHAQCFDVALMDDGS-VV 265 (286)
T ss_dssp ------CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE-ESSCCSCEEEEEEETTTE-EE
T ss_pred ------CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc-ccCCCCcceeEEECCCCc-EE
Confidence 233444432 4588999999999999888886 9999995 466666665 232 3478999999986 67
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++ +.|+.|+.
T Consensus 266 vs-~~~~~v~v 275 (286)
T 1q7f_A 266 LA-SKDYRLYI 275 (286)
T ss_dssp EE-ETTTEEEE
T ss_pred EE-CCCCeEEE
Confidence 66 56888864
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-10 Score=111.43 Aligned_cols=139 Identities=22% Similarity=0.292 Sum_probs=105.9
Q ss_pred ceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 126 SCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
..++|+|++|+|..+..++.+++|++|.|. .|.|+.++. .+..||+|+.|.+.+|++..+ .++.++++|++|.+
T Consensus 49 ~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~-~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l----~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 49 ACKHLALSTNNIEKISSLSGMENLRILSLG-RNLIKKIEN-LDAVADTLEELWISYNQIASL----SGIEKLVNLRVLYM 122 (198)
T ss_dssp TCSEEECSEEEESCCCCHHHHTTCCEEEEE-EEEECSCSS-HHHHHHHCSEEEEEEEECCCH----HHHHHHHHSSEEEE
T ss_pred CCCEEECCCCCCccccccccCCCCCEEECC-CCCcccccc-hhhcCCcCCEEECcCCcCCcC----CccccCCCCCEEEC
Confidence 467899999999999888899999999999 788998874 577789999999999998876 57888888888886
Q ss_pred ceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhcccchhhhhccCCCCCCCcceeccccc
Q 035500 206 QMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLRTMNLMELSSCLSPNLNGHAEMLDEVN 285 (606)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 285 (606)
..+. +..+ ..++.+.-+..|+
T Consensus 123 ~~N~---------------------------------------i~~~---~~~~~l~~l~~L~----------------- 143 (198)
T 1ds9_A 123 SNNK---------------------------------------ITNW---GEIDKLAALDKLE----------------- 143 (198)
T ss_dssp SEEE---------------------------------------CCCH---HHHHHHTTTTTCS-----------------
T ss_pred CCCc---------------------------------------CCch---hHHHHHhcCCCCC-----------------
Confidence 6643 0000 0001111122233
Q ss_pred CCCCCCCCcccccccccchhhhhhhccCCCCcccc-------hhhHHHHHhhCCCceeccCCCCCcchHHHHHH
Q 035500 286 DSNEFPGGAHKQDLMDANVKLKKYISHHPSPICFE-------KHYREYMIASLPQLEVLDNLPIGRLDREIAKS 352 (606)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~v~L~~~l~~~~npi~~~-------~~YReyvI~~Lp~LkvLD~~~i~~~eRe~A~~ 352 (606)
++.+.+||+... ..|+..++..+|+|+.||+.++.+.+|..|..
T Consensus 144 -----------------------~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~~e~~~a~~ 194 (198)
T 1ds9_A 144 -----------------------DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANV 194 (198)
T ss_dssp -----------------------EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTTTTTTHHHH
T ss_pred -----------------------EEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCHHHHHHHHh
Confidence 666777777765 78999999999999999999999999998853
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-08 Score=106.97 Aligned_cols=133 Identities=8% Similarity=0.003 Sum_probs=104.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+.++| ++++|+++ .+|.|++||+.+........ .|...+.++.+.+. .+++++.||++.+||+....
T Consensus 90 V~~l~f---d~~~L~v~-~~~~l~v~dv~sl~~~~~~~--~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~--- 157 (388)
T 1xip_A 90 VIFVCF---HGDQVLVS-TRNALYSLDLEELSEFRTVT--SFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKS--- 157 (388)
T ss_dssp EEEEEE---ETTEEEEE-ESSEEEEEESSSTTCEEEEE--ECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCC---
T ss_pred eeEEEE---CCCEEEEE-cCCcEEEEEchhhhccCccc--eeecceeeEEecCC---CEEEEECCCCEEEEEccCCc---
Confidence 678889 78899999 88999999998765544433 66777988887752 39999999999999999732
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eEEE------cC--CCCCCeEEEEEeCCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP--LQLF------TD--MHREPINVAKFSHHS 589 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~--v~~l------~~--gH~~~I~sV~fsP~g 589 (606)
.. .....|.+++|||+| ++.|..||++++|+...++. ..++ .. +|...|.+|.|.+++
T Consensus 158 -------~~---~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 158 -------TK---QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp -------EE---EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred -------cc---cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 11 133569999999999 78899999999999987775 5566 21 378899999999998
Q ss_pred CeEEEEE
Q 035500 590 PLCLLLL 596 (606)
Q Consensus 590 ~~LLaTg 596 (606)
.++++-+
T Consensus 226 ~flv~y~ 232 (388)
T 1xip_A 226 DFLAVFG 232 (388)
T ss_dssp EEEEEEE
T ss_pred eEEEEEc
Confidence 8766533
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-07 Score=96.31 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=116.7
Q ss_pred eeEEEEcCCCCCEEEEEeCC------------------------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD------------------------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYP 495 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D------------------------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~ 495 (606)
+..++++| +++++++.+.+ ++|.+||..+++....+. .++-....+++++| ++
T Consensus 26 v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~-~g 102 (329)
T 3fvz_A 26 VSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDT-DG 102 (329)
T ss_dssp EEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECT-TS
T ss_pred ceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECC-CC
Confidence 78899999 89999998888 479999999888876443 24556799999998 56
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee----------cCCCeEEEEEcc-CCCEEEEEe-CCCcEEEEEC
Q 035500 496 SKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY----------DFEQLTSVHVNS-TDDQFLASG-YSKNVALYDI 563 (606)
Q Consensus 496 ~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~----------~~~~V~sV~~sp-~g~~LaSgs-~Dg~I~IWDl 563 (606)
.++++.+.++.|+.||..... ..+..+. +......|+++| ++.++++.+ .++.|++||
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~---------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~- 172 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKE---------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS- 172 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSS---------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred CEEEEECCCCEEEEEeCCCCe---------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence 788888889999999986531 1233332 123478999999 788888887 689999999
Q ss_pred CCCceeEEEcC---------CCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 564 NTEKPLQLFTD---------MHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 564 rt~k~v~~l~~---------gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..++.+..+.. ++-.....++++|++..++++.+.++.|+.
T Consensus 173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~ 222 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQC 222 (329)
T ss_dssp TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEE
Confidence 56777766641 123448899999996778999988888875
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=9.8e-08 Score=98.28 Aligned_cols=153 Identities=10% Similarity=0.075 Sum_probs=115.8
Q ss_pred ceeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCceEEEEeccC--------CCCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 439 RPRQFEYNPSNPSLMAFGT-LDGEVIVINHENGNVACYIPSIG--------GTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs-~DGtVrIWDi~tg~~v~~~~~~g--------H~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
.+..++++|.++.++++.+ .++.|++|| .++..+..+...+ +-....+++++|+++.++++.+.++.|++
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~ 222 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQC 222 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEE
Confidence 3788999997788888886 699999999 5577666553222 22448999999865778888889999999
Q ss_pred EeCCCCCCCcccccCCcceEEee---cCCCeEEEEEccCCCEEEEEe-------CCCcEEEEECCCCceeEEEc--CCCC
Q 035500 510 FDLNHIPPKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASG-------YSKNVALYDINTEKPLQLFT--DMHR 577 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs-------~Dg~I~IWDlrt~k~v~~l~--~gH~ 577 (606)
||..++ ..+.++. ....+.+++++| +..+++.+ .+..|++||..+++.+..+. .++.
T Consensus 223 ~~~~~G----------~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~ 291 (329)
T 3fvz_A 223 FKTDTK----------EFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHF 291 (329)
T ss_dssp EETTTC----------CEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCC
T ss_pred EECCCC----------cEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCcc
Confidence 999853 2344443 234588999999 44444433 34589999999999988874 2577
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 578 EPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 578 ~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.....++++|+| .++++.+.++.|+.
T Consensus 292 ~~p~~ia~~~dG-~lyvad~~~~~I~~ 317 (329)
T 3fvz_A 292 DMPHDIVASEDG-TVYIGDAHTNTVWK 317 (329)
T ss_dssp SSEEEEEECTTS-EEEEEESSSCCEEE
T ss_pred CCeeEEEECCCC-CEEEEECCCCEEEE
Confidence 789999999999 68999998988864
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.9e-08 Score=106.38 Aligned_cols=138 Identities=9% Similarity=0.079 Sum_probs=101.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc---------eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN---------VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~---------~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
+..+++++ ...++++|+.+| +++|+.+... ..... ...+.+ |+.++| ++..|+.+ .++.|++|
T Consensus 40 ~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 40 LQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 67789999 778999999986 6679865322 11101 124566 999999 45788887 88999999
Q ss_pred eCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 511 DLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
|++.... ......+..++.++.+.+. .+++++.||.+.+||+.++.... +...|++++|+|.|
T Consensus 112 dv~sl~~---------~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG- 174 (388)
T 1xip_A 112 DLEELSE---------FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ- 174 (388)
T ss_dssp ESSSTTC---------EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE-
T ss_pred Echhhhc---------cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc-
Confidence 9988421 1112233455788776644 39999999999999999887643 34689999999999
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
++.|..||++++
T Consensus 175 --~~vg~~dg~i~~ 186 (388)
T 1xip_A 175 --LAVLLKDRSFQS 186 (388)
T ss_dssp --EEEEETTSCEEE
T ss_pred --eEEEEcCCcEEE
Confidence 467888998876
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.3e-08 Score=110.77 Aligned_cols=150 Identities=9% Similarity=-0.112 Sum_probs=105.9
Q ss_pred eeEEEEcCCCCCEEEEEeCC----------CcEEEEECCC------CceEEEEecc-CCCCCEEEEEEeeCCCCEEEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLD----------GEVIVINHEN------GNVACYIPSI-GGTNSVLGLCWLKKYPSKLVAGS 502 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D----------GtVrIWDi~t------g~~v~~~~~~-gH~~~V~~L~fsp~~~~~LaSgS 502 (606)
+.+++|+| ||+.|++++.| .+|++||..+ +.... +. .+...+..++|+| ++.+|+.++
T Consensus 132 ~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~Sp-DG~~la~~~ 206 (662)
T 3azo_A 132 WADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE---LSDDAHRFVTGPRLSP-DGRQAVWLA 206 (662)
T ss_dssp EEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE---SSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred ccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE---EEecCCCcccCceECC-CCCEEEEEE
Confidence 67899999 99999999887 5899999987 55432 23 4456788899999 678888777
Q ss_pred CC--------CeEEEEeCCC-CCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCC--cEEEEECCCCceeE
Q 035500 503 DS--------GCVRLFDLNH-IPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSK--NVALYDINTEKPLQ 570 (606)
Q Consensus 503 ~D--------gtIklWDl~~-~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg--~I~IWDlrt~k~v~ 570 (606)
.+ ..|.+||+.. +.. ........+ ...+..+.|+|+|+++++++.++ .|..||+.+++...
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~-------~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRF-------ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ 279 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCE-------EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred CCCCCCCCCCcEEEEEEECCCCcc-------cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee
Confidence 55 3799999983 210 022223333 46699999999999888888888 66667776676544
Q ss_pred EEcCCCCCC--------eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 571 LFTDMHREP--------INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 571 ~l~~gH~~~--------I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
... ++... +..++|+|++. ++++++. +.++.
T Consensus 280 l~~-~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l 318 (662)
T 3azo_A 280 LCR-REEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVL 318 (662)
T ss_dssp SSC-CSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEE
T ss_pred ccc-ccccccCccccccCceEeEeCCCE-EEEEEEc-CccEE
Confidence 333 33332 56788999887 5677766 65543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-07 Score=93.02 Aligned_cols=148 Identities=9% Similarity=0.004 Sum_probs=106.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC----CeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS----GCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D----gtIklWDl~~~ 515 (606)
+.+++|+| ++++++++..++.|.+||..+++...... .+...+.+++|+| ++.+++++..+ +.|.+||....
T Consensus 47 ~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 47 LEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred ccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEee--CCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 67789999 88888889999999999999887655432 4567899999998 45777776666 68999998763
Q ss_pred CCCcccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeC------CCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 516 PPKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGY------SKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~------Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
.. ...+. ....+.+++++|++.++++... .+.|..||..+++...... +...++.++|+
T Consensus 123 ~~----------~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~ 190 (333)
T 2dg1_A 123 NL----------QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALS 190 (333)
T ss_dssp SC----------EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSEEEEEEC
T ss_pred EE----------EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCCcccceEEC
Confidence 21 11111 2345899999999998887764 3556666666555433322 34568899999
Q ss_pred CCCCeEEEEEeCCCeEE
Q 035500 587 HHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIR 603 (606)
|++..++++.+.++.|.
T Consensus 191 ~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 191 TDEKVLWVTETTANRLH 207 (333)
T ss_dssp TTSSEEEEEEGGGTEEE
T ss_pred CCCCEEEEEeCCCCeEE
Confidence 99987777777666554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-09 Score=110.96 Aligned_cols=39 Identities=3% Similarity=-0.164 Sum_probs=24.8
Q ss_pred hhccCCCCcccchhhHHHHHhhCCCceeccCCCCCcchH
Q 035500 309 YISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDR 347 (606)
Q Consensus 309 ~l~~~~npi~~~~~YReyvI~~Lp~LkvLD~~~i~~~eR 347 (606)
++.+.+|++...+.+....+..++.++.+|+..+.....
T Consensus 204 ~L~l~~n~i~~~~~~~~~~l~~~~~l~~l~~~~i~~~~~ 242 (291)
T 1h6t_A 204 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242 (291)
T ss_dssp EEEEEEEEEECCCEECCSEEEEECCCBCTTSCBCCEEEE
T ss_pred EEECcCCcccCCccccccccEEcceEECCCCCCcCCCee
Confidence 566666676666555544455566777788777765443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.78 E-value=4.3e-08 Score=112.46 Aligned_cols=150 Identities=7% Similarity=0.075 Sum_probs=101.9
Q ss_pred eEEEEcCCCCCEEEEEeCC---------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 441 RQFEYNPSNPSLMAFGTLD---------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~D---------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
..++||| |+++|++++.+ +.+.+||+.+++... +..|.+.+...+|+| ++..|+.++ |+.|.+||
T Consensus 65 ~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~---l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~ 138 (740)
T 4a5s_A 65 NDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT---EERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKI 138 (740)
T ss_dssp CEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---SSCCCTTEEEEEECS-STTCEEEEE-TTEEEEES
T ss_pred cceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE---cccCCCcceeeEECC-CCCEEEEEE-CCeEEEEE
Confidence 3478999 99999999987 566799999988653 447778899999999 567777774 78999999
Q ss_pred CCCCCCCcccccCCcceEEeecC----------CCeEEEEEccCCCEEEEEeCCC-------------------------
Q 035500 512 LNHIPPKVADARGNSSVATYYDF----------EQLTSVHVNSTDDQFLASGYSK------------------------- 556 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~~----------~~V~sV~~sp~g~~LaSgs~Dg------------------------- 556 (606)
..++....-+..+. ....+.++ ....++.|+|+|+.||.++.|.
T Consensus 139 ~~~~~~~~lt~~g~-~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 217 (740)
T 4a5s_A 139 EPNLPSYRITWTGK-EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217 (740)
T ss_dssp STTSCCEECCSCCB-TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred CCCCceEEEcCCCC-ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence 98743210000000 00011110 1124589999999998875332
Q ss_pred -----------cEEEEECCC---Cc--eeEEEcC-----CCCCCeEEEEEeCCCCeEEEEEe
Q 035500 557 -----------NVALYDINT---EK--PLQLFTD-----MHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 557 -----------~I~IWDlrt---~k--~v~~l~~-----gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
+|++||+.+ ++ ....+.. +|...+..++|+|+|+.++....
T Consensus 218 yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~ 279 (740)
T 4a5s_A 218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR 279 (740)
T ss_dssp CCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC
Confidence 488899998 73 2333432 37788999999999985444433
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-08 Score=93.29 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=56.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+....+......=..-+.|+|++|.|..+..++.+++|.+|+|. .|.|+..-+..|..+|+|+.|.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELS-DNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECC-SSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECC-CCcccchHHHHhhhCCCCCEEEC
Confidence 55777777776554222223323333456666666666666666666666666666 66666633344555666666666
Q ss_pred ccccccchhhhhHHhhcCCchhhh
Q 035500 180 CETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
.+|++..+. ....+..+|+|++|
T Consensus 96 s~N~i~~~~-~~~~~~~l~~L~~L 118 (149)
T 2je0_A 96 SGNKIKDLS-TIEPLKKLENLKSL 118 (149)
T ss_dssp TTSCCCSHH-HHGGGGGCTTCCEE
T ss_pred CCCcCCChH-HHHHHhhCCCCCEE
Confidence 666665541 12334444444433
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.74 E-value=7.1e-08 Score=108.06 Aligned_cols=150 Identities=10% Similarity=0.081 Sum_probs=102.3
Q ss_pred EEEc--CCCCCE-EEEEeC-CCcEEEEECC--C-CceEEEEeccC---CCCCEEEEEEeeCCCCEEEEEECC--------
Q 035500 443 FEYN--PSNPSL-MAFGTL-DGEVIVINHE--N-GNVACYIPSIG---GTNSVLGLCWLKKYPSKLVAGSDS-------- 504 (606)
Q Consensus 443 lafs--P~dg~~-LaSGs~-DGtVrIWDi~--t-g~~v~~~~~~g---H~~~V~~L~fsp~~~~~LaSgS~D-------- 504 (606)
+.|+ | |++. |+.++. ++.|.+|+.. . +... .+.... |...+.+++|+| +++.|++++.|
T Consensus 82 ~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 82 WAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp EEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTC
T ss_pred ceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCC
Confidence 4465 8 8887 776654 5667777765 2 4432 222111 667789999999 66888888877
Q ss_pred --CeEEEEeCCCCCCCcccccCCcceEEe--ecCCCeEEEEEccCCCEEEEEeCC--------CcEEEEECC-CC---ce
Q 035500 505 --GCVRLFDLNHIPPKVADARGNSSVATY--YDFEQLTSVHVNSTDDQFLASGYS--------KNVALYDIN-TE---KP 568 (606)
Q Consensus 505 --gtIklWDl~~~~~~~~~l~~~~~i~t~--~~~~~V~sV~~sp~g~~LaSgs~D--------g~I~IWDlr-t~---k~ 568 (606)
.+|.+||+.+..... ......+ .+...+.+++|+|+|++++.++.+ ..|.+||+. ++ +.
T Consensus 159 ~~~~i~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~ 233 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAAD-----RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADT 233 (662)
T ss_dssp EEEEEEEEETTSTTTTC-----GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEE
T ss_pred ceeEEEEEECCCCcccc-----CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccccc
Confidence 589999988621000 0112222 234557889999999999887755 379999999 56 44
Q ss_pred eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 569 LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 569 v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
..... +|...+..+.|+|+|+ ++++++.|+..
T Consensus 234 ~~l~~-~~~~~~~~~~~spdg~-l~~~~~~~~~~ 265 (662)
T 3azo_A 234 RTLLG-GPEEAIAQAEWAPDGS-LIVATDRTGWW 265 (662)
T ss_dssp EEEEE-ETTBCEEEEEECTTSC-EEEEECTTSSC
T ss_pred EEeCC-CCCceEcceEECCCCe-EEEEECCCCCe
Confidence 44444 5678999999999999 78888888743
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.74 E-value=5.2e-09 Score=97.44 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=56.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+....+......=..-++|+|++|.|..+..++.+++|++|+|. .|.|+......|..+|+|+.|.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELS-ENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEE-SCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECc-CCcCchHHHHHHhhCCCCCEEec
Confidence 55777777776554212222222223345566666666666666666666666666 55666644445555666666666
Q ss_pred ccccccchhhhhHHhhcCCchhhh
Q 035500 180 CETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
.+|++..+ ....++.++++|+.|
T Consensus 103 s~N~l~~~-~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 103 SGNKLKDI-STLEPLKKLECLKSL 125 (168)
T ss_dssp BSSSCCSS-GGGGGGSSCSCCCEE
T ss_pred cCCccCcc-hhHHHHhcCCCCCEE
Confidence 66666554 112344444444433
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-07 Score=97.23 Aligned_cols=139 Identities=12% Similarity=0.100 Sum_probs=101.2
Q ss_pred EEEcCCCCCEEEEEeC-CC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 443 FEYNPSNPSLMAFGTL-DG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 443 lafsP~dg~~LaSGs~-DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
.+|+| ||++||.++. +| .|.+||..+++...... +|...+.++.|+| ++..|+.++.++.|.+||+.++.
T Consensus 41 ~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~--~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~--- 113 (388)
T 3pe7_A 41 KCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE--GRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLE--- 113 (388)
T ss_dssp CCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCC--SSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCC---
T ss_pred ccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeee--CCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCc---
Confidence 57999 9999999887 67 48888999888765433 5555566778999 67889999999999999999842
Q ss_pred ccccCCcceEEeecCCC-eEEEE--EccCCCEEEEE----------------------eCCCcEEEEECCCCceeEEEcC
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVH--VNSTDDQFLAS----------------------GYSKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~--~sp~g~~LaSg----------------------s~Dg~I~IWDlrt~k~v~~l~~ 574 (606)
....+..+.. +.... ++|++..++.. +.+..|.+||+.+++......
T Consensus 114 -------~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~- 185 (388)
T 3pe7_A 114 -------ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ- 185 (388)
T ss_dssp -------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-
T ss_pred -------ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-
Confidence 2333333333 33333 48888887743 244789999999987655544
Q ss_pred CCCCCeEEEEEeC-CCCeEEEEEe
Q 035500 575 MHREPINVAKFSH-HSPLCLLLLH 597 (606)
Q Consensus 575 gH~~~I~sV~fsP-~g~~LLaTgS 597 (606)
+...+..++|+| +|..++.+..
T Consensus 186 -~~~~~~~~~~sp~dg~~l~~~~~ 208 (388)
T 3pe7_A 186 -ENQWLGHPIYRPYDDSTVAFCHE 208 (388)
T ss_dssp -ESSCEEEEEEETTEEEEEEEEEC
T ss_pred -CCccccccEECCCCCCEEEEEEe
Confidence 567899999999 9887554443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=8.1e-07 Score=88.42 Aligned_cols=151 Identities=11% Similarity=0.123 Sum_probs=110.3
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec----cCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEeCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS----IGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFDLN 513 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~----~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWDl~ 513 (606)
.+.+++++| +++++++.+.++.|++||.. ++....+.. .+|...+.++++.+.++.++++... ++.|.+||..
T Consensus 31 ~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~ 108 (286)
T 1q7f_A 31 EPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 108 (286)
T ss_dssp CEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC
Confidence 388899999 88899988999999999987 555555432 1345678999996435455555533 8999999943
Q ss_pred CCCCCcccccCCcceEEeec--CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCC
Q 035500 514 HIPPKVADARGNSSVATYYD--FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSP 590 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~--~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~ 590 (606)
. ..+..+.. ...+.++++.|+++++++.+.++.|.+||.. ++.+..+.. ++...++.++++|++.
T Consensus 109 g-----------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 109 G-----------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp S-----------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred C-----------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC
Confidence 3 23344432 2458999999999988888888999999964 556555542 3456789999999987
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
++++.+.++.|+.
T Consensus 177 -l~v~~~~~~~i~~ 189 (286)
T 1q7f_A 177 -IFISDNRAHCVKV 189 (286)
T ss_dssp -EEEEEGGGTEEEE
T ss_pred -EEEEECCCCEEEE
Confidence 7788777776654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=5.8e-09 Score=107.49 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=38.6
Q ss_pred eeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 127 CHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
=+.|+|+.|++..+..++.+++|++|+|. .|.|+.++. |..||+|+.|.|.+|++..+ .++.++++|++|.+.
T Consensus 87 L~~L~L~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 87 ITELELSGNPLKNVSAIAGLQSIKTLDLT-STQITDVTP--LAGLSNLQVLYLDLNQITNI----SPLAGLTNLQYLSIG 159 (308)
T ss_dssp CCEEECCSCCCSCCGGGTTCTTCCEEECT-TSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGGGCTTCCEEECC
T ss_pred CCEEEccCCcCCCchhhcCCCCCCEEECC-CCCCCCchh--hcCCCCCCEEECCCCccCcC----ccccCCCCccEEEcc
Confidence 34455555555555555555555555555 455555543 55555555555555555444 335555555555543
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-08 Score=98.86 Aligned_cols=40 Identities=10% Similarity=-0.015 Sum_probs=31.4
Q ss_pred hhccCCCCccc----chhhHHHHHhhCCCceeccCCCCCcchHH
Q 035500 309 YISHHPSPICF----EKHYREYMIASLPQLEVLDNLPIGRLDRE 348 (606)
Q Consensus 309 ~l~~~~npi~~----~~~YReyvI~~Lp~LkvLD~~~i~~~eRe 348 (606)
++.+.+||+.+ ..+++.++....+.+..+|+.++.+.++.
T Consensus 163 ~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~ 206 (229)
T 3e6j_A 163 HAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSA 206 (229)
T ss_dssp EEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCS
T ss_pred EEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcC
Confidence 77788888873 46689999999999999999887655443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.4e-07 Score=103.42 Aligned_cols=146 Identities=6% Similarity=0.005 Sum_probs=104.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCC-----cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe--------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG-----EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC-------- 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG-----tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt-------- 506 (606)
+..++||| ||++||.++.++ +|++||+.+++...... .+ ..+.+++|+| ++..|+.++.|+.
T Consensus 127 ~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 127 LRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ER-VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp EEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EE-ECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred EEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc--cC-cccceEEEEe-CCCEEEEEEECCccccccccc
Confidence 67889999 999999877654 89999999988765321 21 2367899999 5678888888776
Q ss_pred --------EEEEeCCCCCCCcccccCCcceEEeec---CCCeEEEEEccCCCEEEEEeC-----CCcEEEEECCC-----
Q 035500 507 --------VRLFDLNHIPPKVADARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGY-----SKNVALYDINT----- 565 (606)
Q Consensus 507 --------IklWDl~~~~~~~~~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~-----Dg~I~IWDlrt----- 565 (606)
|++|++.+... .....+.. ...+.++.|+|+|++++.++. +..|.+||+.+
T Consensus 202 ~~~~~~~~v~~~~l~t~~~--------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQS--------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCCCCCCEEEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccCCCCEEEEEECCCCcc--------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 99999977421 11233332 234789999999998877664 57899999987
Q ss_pred -Cc-eeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 566 -EK-PLQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 566 -~k-~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
+. ....+. .|...+.. .|+|+|..+++.+..++
T Consensus 274 ~~~~~~~~l~-~~~~~~~~-~~s~dg~~l~~~s~~~~ 308 (710)
T 2xdw_A 274 TGILKWVKLI-DNFEGEYD-YVTNEGTVFTFKTNRHS 308 (710)
T ss_dssp CSSCCCEEEE-CSSSSCEE-EEEEETTEEEEEECTTC
T ss_pred CCccceEEee-CCCCcEEE-EEeccCCEEEEEECCCC
Confidence 53 355565 46666655 48899998777766543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.64 E-value=8.5e-07 Score=91.66 Aligned_cols=142 Identities=10% Similarity=-0.031 Sum_probs=98.6
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEE--eeCCCCEEEEE------------------
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCW--LKKYPSKLVAG------------------ 501 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~f--sp~~~~~LaSg------------------ 501 (606)
..+|+| +++.|+.++.++.|++||+.+++...... .+...+....| +| ++..++..
T Consensus 85 ~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~--~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 85 GGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQ--VPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp SCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE--CCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred ceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeee--chhhcccccceeECC-CCCeeccccccCcccccccccchhhh
Confidence 457999 99999999999999999999988766554 44444544444 55 45666532
Q ss_pred ----ECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCC------CcEEEEECCCCceeE
Q 035500 502 ----SDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYS------KNVALYDINTEKPLQ 570 (606)
Q Consensus 502 ----S~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~D------g~I~IWDlrt~k~v~ 570 (606)
+.++.|.+||+.++ .......+...+..++|+| +|+.++.++.+ ..|.+||...++. .
T Consensus 161 ~~~~~~~~~l~~~d~~~g----------~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~ 229 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDLKTG----------ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-R 229 (388)
T ss_dssp HGGGCCCEEEEEEETTTC----------CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-E
T ss_pred hhccCCcceEEEEECCCC----------ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-E
Confidence 24578999998874 2233334556689999999 99888777653 3788888876554 3
Q ss_pred EEcCCCC-CCeEEEEEeCCCCeEEEEEeC
Q 035500 571 LFTDMHR-EPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 571 ~l~~gH~-~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.+...+. ..+...+|+|+|+.++.++..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 3432222 357889999999986554443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=7.3e-08 Score=99.17 Aligned_cols=99 Identities=13% Similarity=0.205 Sum_probs=75.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+.. +..+. .=-.-+.|+|+.|+|..+..++.+++|++|+|. .|.|+.++ -|..+|+|+.|.|
T Consensus 41 ~~L~~L~l~~~~i~~--l~~~~-~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~-~n~l~~~~--~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT--IEGVQ-YLNNLIGLELKDNQITDLAPLKNLTKITELELS-GNPLKNVS--AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC--CTTGG-GCTTCCEEECCSSCCCCCGGGTTCCSCCEEECC-SCCCSCCG--GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC--chhhh-ccCCCCEEEccCCcCCCChhHccCCCCCEEEcc-CCcCCCch--hhcCCCCCCEEEC
Confidence 378888888864432 32222 123457899999998888888888899999999 77788885 3888999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+ .++.++++|++|.+..|
T Consensus 115 ~~n~l~~~----~~l~~l~~L~~L~l~~n 139 (308)
T 1h6u_A 115 TSTQITDV----TPLAGLSNLQVLYLDLN 139 (308)
T ss_dssp TTSCCCCC----GGGTTCTTCCEEECCSS
T ss_pred CCCCCCCc----hhhcCCCCCCEEECCCC
Confidence 99988776 56888888888886553
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-08 Score=114.44 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=62.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+..-. .+ ..=..=+.|+|+.|.|..+..++.+++|++|+|. .|.|+.++. |..||+|+.|.|
T Consensus 65 ~~L~~L~Ls~N~l~~~~--~l-~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls-~N~l~~l~~--l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIK--PL-TNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE-HNGISDING--LVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCCCCG--GG-GGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT-TSCCCCCGG--GGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCCh--hh-ccCCCCCEEECcCCCCCCChhhccCCCCCEEEec-CCCCCCCcc--ccCCCccCEEEC
Confidence 46777777766543211 11 1112235577777777777777777777777777 666777643 667777777777
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+ ..+.+|++|++|.+..|
T Consensus 139 s~N~l~~l----~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 139 GNNKITDI----TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CSSCCCCC----GGGGSCTTCSEEECCSS
T ss_pred CCCccCCc----hhhcccCCCCEEECcCC
Confidence 77777665 56677777777765443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-06 Score=86.69 Aligned_cols=147 Identities=10% Similarity=-0.037 Sum_probs=103.9
Q ss_pred eeEEEEcCCCCC-EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPS-LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~-~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++|+| +++ +++++..++.|..||..++ ...+. .+...+.+++++| ++.++++.+.++.|.+||..++..
T Consensus 30 ~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~~~~~--~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~- 102 (296)
T 3e5z_A 30 TEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--LSPEM--HPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEW- 102 (296)
T ss_dssp EEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--EEEEE--SSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCE-
T ss_pred ccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--eEEEE--CCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcE-
Confidence 56788999 777 8888999999999999877 44443 5667799999998 567777776778999999866321
Q ss_pred cccccCCcceE-Eee--cCCCeEEEEEccCCCEEEEE----e-------------CCCcEEEEECCCCceeEEEcCCCCC
Q 035500 519 VADARGNSSVA-TYY--DFEQLTSVHVNSTDDQFLAS----G-------------YSKNVALYDINTEKPLQLFTDMHRE 578 (606)
Q Consensus 519 ~~~l~~~~~i~-t~~--~~~~V~sV~~sp~g~~LaSg----s-------------~Dg~I~IWDlrt~k~v~~l~~gH~~ 578 (606)
..+. ... ....+.++++.|+|+++++. + ..+.|..||.. ++. ..+. .+..
T Consensus 103 -------~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-~~~~ 172 (296)
T 3e5z_A 103 -------ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI-RDRV 172 (296)
T ss_dssp -------EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE-CCCS
T ss_pred -------EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee-cCCC
Confidence 0111 111 12346789999999988873 2 12455566655 443 3344 3667
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 579 PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+.++|+|++..+ ++.+.++.|..
T Consensus 173 ~~~gi~~s~dg~~l-v~~~~~~~i~~ 197 (296)
T 3e5z_A 173 KPNGLAFLPSGNLL-VSDTGDNATHR 197 (296)
T ss_dssp SEEEEEECTTSCEE-EEETTTTEEEE
T ss_pred CCccEEECCCCCEE-EEeCCCCeEEE
Confidence 78999999999976 88887776653
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=98.58 E-value=7.6e-08 Score=98.36 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=59.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+. .+..+ +.=..-+.|+|++|+|..+..++.+++|++|.|+ .|.|+.++. |..||+|+.|.+
T Consensus 46 ~~L~~L~l~~~~i~--~~~~~-~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIK--SVQGI-QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLD-ENKVKDLSS--LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCC--CCTTG-GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCGGG--GTTCTTCCEEEC
T ss_pred CcccEEEccCCCcc--cChhH-hcCCCCCEEEccCCccCCCcccccCCCCCEEECC-CCcCCCChh--hccCCCCCEEEC
Confidence 34667777665432 11111 1112345677777777766666667777777777 666776654 667777777777
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+ .++..+++|++|.+..
T Consensus 120 ~~n~i~~~----~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 120 EHNGISDI----NGLVHLPQLESLYLGN 143 (291)
T ss_dssp TTSCCCCC----GGGGGCTTCCEEECCS
T ss_pred CCCcCCCC----hhhcCCCCCCEEEccC
Confidence 77776665 5566666666666444
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=98.34 Aligned_cols=75 Identities=15% Similarity=0.289 Sum_probs=46.5
Q ss_pred eeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 127 CHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
=+.|+|++|+|..+..++.+++|++|+|. .|.|+.++ .|..||+|+.|.+.+|++..+ .++.++++|++|.+.
T Consensus 68 L~~L~l~~n~i~~~~~~~~l~~L~~L~L~-~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~----~~~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 68 LEYLNLNGNQITDISPLSNLVKLTNLYIG-TNKITDIS--ALQNLTNLRELYLNEDNISDI----SPLANLTKMYSLNLG 140 (347)
T ss_dssp CCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCG--GGTTCTTCSEEECTTSCCCCC----GGGTTCTTCCEEECT
T ss_pred ccEEEccCCccccchhhhcCCcCCEEEcc-CCcccCch--HHcCCCcCCEEECcCCcccCc----hhhccCCceeEEECC
Confidence 35566666666666666666666666666 55666664 266666666666666666655 346666666666655
Q ss_pred ee
Q 035500 207 MC 208 (606)
Q Consensus 207 ~~ 208 (606)
.|
T Consensus 141 ~n 142 (347)
T 4fmz_A 141 AN 142 (347)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.57 E-value=9e-09 Score=103.82 Aligned_cols=173 Identities=13% Similarity=0.045 Sum_probs=109.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+||.++|+++.+. .+..+.. =..-+.|+|++|+|..+..++.+++|++|+|+ .|.|+.++.-.+ ++|+.|.|
T Consensus 41 ~~L~~L~l~~n~i~--~l~~l~~-l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~-~N~l~~l~~~~~---~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ--SLAGMQF-FTNLKELHLSHNQISDLSPLKDLTKLEELSVN-RNRLKNLNGIPS---ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCC--CCTTGGG-CTTCCEEECCSSCCCCCGGGTTCSSCCEEECC-SSCCSCCTTCCC---SSCCEEEC
T ss_pred CcCcEEECcCCCcc--cchHHhh-CCCCCEEECCCCccCCChhhccCCCCCEEECC-CCccCCcCcccc---CcccEEEc
Confidence 57888888886443 2322221 13457788888888888878888888888888 778888865333 88888888
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhc
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLR 259 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (606)
.+|++..+ .++.++++|++|.+..+- +. .++
T Consensus 114 ~~N~l~~~----~~l~~l~~L~~L~Ls~N~---------------------------------------i~------~~~ 144 (263)
T 1xeu_A 114 DNNELRDT----DSLIHLKNLEILSIRNNK---------------------------------------LK------SIV 144 (263)
T ss_dssp CSSCCSBS----GGGTTCTTCCEEECTTSC---------------------------------------CC------BCG
T ss_pred cCCccCCC----hhhcCcccccEEECCCCc---------------------------------------CC------CCh
Confidence 88888776 678888888888754432 00 112
Q ss_pred ccchhhhhccCCCCCCCcceecccccC-CCCCCCCcccccccccchhhhhhhccCCCCcccchhhHHHHHhhCCCceecc
Q 035500 260 TMNLMELSSCLSPNLNGHAEMLDEVND-SNEFPGGAHKQDLMDANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLD 338 (606)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~v~L~~~l~~~~npi~~~~~YReyvI~~Lp~LkvLD 338 (606)
.+.-+..|..|++.+|++-.+ +.+.. +++. ++.+.+|++...+.+....+..++.++.+|
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~------------------~L~l~~N~~~~~~~~~~~~l~~~~~l~~l~ 205 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVN------------------WIDLTGQKCVNEPVKYQPELYITNTVKDPD 205 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCC------------------EEEEEEEEEECCCEECCSEEEEECCCBCTT
T ss_pred HHccCCCCCEEECCCCcCcch-HHhccCCCCC------------------EEeCCCCcccCCccccccceEECCeeecCC
Confidence 344456788888888877666 33332 2222 444555555544433222223356788888
Q ss_pred CCCCCcchH
Q 035500 339 NLPIGRLDR 347 (606)
Q Consensus 339 ~~~i~~~eR 347 (606)
+..+...++
T Consensus 206 ~~~i~~~~i 214 (263)
T 1xeu_A 206 GRWISPYYI 214 (263)
T ss_dssp SCBCCCSEE
T ss_pred CCCcCCCEe
Confidence 877765443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=85.82 Aligned_cols=150 Identities=8% Similarity=0.038 Sum_probs=109.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++++| +++++++...++.|.+|+..+...... ...+...+.++++++ ++..+++...++.|.+||......
T Consensus 110 p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~-- 183 (270)
T 1rwi_B 110 PEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVL--PFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQ-- 183 (270)
T ss_dssp EEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEEC--CCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCE--
T ss_pred CcceEECC-CCCEEEEECCCCEEEEEECCCceeEee--ccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCce--
Confidence 77899999 888888888889999998665443321 113334678899998 556777777788999999876321
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
......+...+.++++.++|.++++...++.|..||........ ....+...+..++++|+|. ++++.+.+
T Consensus 184 -------~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~-l~v~~~~~ 254 (270)
T 1rwi_B 184 -------VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRT-VYVADRGN 254 (270)
T ss_dssp -------EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCC-EEEEEGGG
T ss_pred -------EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCC-EEEEECCC
Confidence 00111122558899999999888888888999999997654432 3323446789999999986 88899989
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
+.|+.
T Consensus 255 ~~v~~ 259 (270)
T 1rwi_B 255 DRVVK 259 (270)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 88875
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.6e-08 Score=92.24 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=73.8
Q ss_pred cceEEEccCccccc-hHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 101 KLRVVDLSNITLRN-DNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 101 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
+|+.++|+++.+.. +.+..+ ..-+.|+|++|.+..+..++.+++|++|.|. .|.|+......|..||+|+.|.|
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l----~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYA----HNIKDLTINNIHATNYNPISGLSNLERLRIM-GKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGC----TTCSEEEEESCCCSCCGGGTTCTTCCEEEEE-CTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CccEEeccCCCccChHHHhcC----CCCCEEEccCCCCCcchhhhcCCCCCEEEeE-CCccCcccChhhcCCCCCCEEEe
Confidence 57788887765542 223332 2456788888888888888888888888888 78888755566888888888888
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++... ...++.++++|++|.+..|
T Consensus 120 s~n~i~~~--~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 120 SHSAHDDS--ILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp CSSBCBGG--GHHHHTTCSSCCEEECCSC
T ss_pred cCCccCcH--hHHHHhhCCCCCEEEccCC
Confidence 88888751 2367788888888886664
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.57 E-value=8.4e-07 Score=90.40 Aligned_cols=133 Identities=12% Similarity=0.141 Sum_probs=92.0
Q ss_pred eeEEEEcCCCCCEEEEE---------eCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC---Ce-
Q 035500 440 PRQFEYNPSNPSLMAFG---------TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS---GC- 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSG---------s~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D---gt- 506 (606)
+...++ +|+.+|.. +.++.|.+||..+++.... ..+..++|+| ++..|+.++.+ +.
T Consensus 17 ~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~Sp-Dg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 17 LSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISP-DGKKIAFMRANEEKKVS 85 (347)
T ss_dssp EEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECT-TSSEEEEEEEETTTTEE
T ss_pred cccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECC-CCCEEEEEEeccCCCcc
Confidence 334445 56666553 2367899999998775432 3588999999 56777777654 34
Q ss_pred -EEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC---------------------------CcE
Q 035500 507 -VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS---------------------------KNV 558 (606)
Q Consensus 507 -IklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D---------------------------g~I 558 (606)
|.+||+..+ .......+.. +..++|+|+|+.++.++.+ ..|
T Consensus 86 ~l~~~~~~~g----------~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 86 EIWVADLETL----------SSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EEEEEETTTT----------EEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred eEEEEECCCC----------ceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence 677777663 2233333334 9999999999988877632 579
Q ss_pred EEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 559 ALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 559 ~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.+||+.+++.+..+. . . .+..+.|+|+| ++++++.+
T Consensus 155 ~~~d~~~~~~~~~l~-~-~-~~~~~~~spdg--~~~~~~~~ 190 (347)
T 2gop_A 155 WIFDTESEEVIEEFE-K-P-RFSSGIWHRDK--IVVNVPHR 190 (347)
T ss_dssp EEEETTTTEEEEEEE-E-E-TTCEEEEETTE--EEEEEECC
T ss_pred EEEECCCCeEEeeec-C-C-CcccccCCCCe--EEEEEecc
Confidence 999999888755565 2 3 78899999999 56666544
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-06 Score=91.27 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=57.9
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCeEEE
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE--KPLQLFTDMHREPINVA 583 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~~I~sV 583 (606)
+|.+||..+ .+.+.++..+. ..+++|+|+|+++++++. ++|.+||..++ +.+..+. .+....+.+
T Consensus 287 ~v~viD~~t----------~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~ 353 (361)
T 2oiz_A 287 EIWVMDTKT----------KQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE-GAAEASLQV 353 (361)
T ss_dssp EEEEEETTT----------TEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET-TSCSSEEEE
T ss_pred eEEEEECCC----------CcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec-cCCCCcEEE
Confidence 555566555 34555666556 899999999999998887 99999999999 8888875 467788899
Q ss_pred EEeCCCC
Q 035500 584 KFSHHSP 590 (606)
Q Consensus 584 ~fsP~g~ 590 (606)
+++|+|.
T Consensus 354 ~~~p~G~ 360 (361)
T 2oiz_A 354 QFHPVGG 360 (361)
T ss_dssp EECCCSC
T ss_pred EecCCCC
Confidence 9999986
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-07 Score=96.56 Aligned_cols=197 Identities=13% Similarity=0.148 Sum_probs=119.3
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEE
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
-.+|+.++|+++....+. .. ...=.+=+.|+|++|.+..+..++.+++|++|.|. .|.++.++. |..+|+|+.|.
T Consensus 131 l~~L~~L~l~~n~~~~~~-~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~ 205 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDL-SP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN-YNQIEDISP--LASLTSLHYFT 205 (347)
T ss_dssp CTTCCEEECTTCTTCCCC-GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECT-TSCCCCCGG--GGGCTTCCEEE
T ss_pred CCceeEEECCCCCCcccc-cc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEcc-CCccccccc--ccCCCccceee
Confidence 468999999987433322 11 12222345688888888888888888899999998 778888866 88888888888
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchh--
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPK-- 256 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 256 (606)
+.+|++..+ ..+..+++|++|.+.+|. -++..+. ..+.+.-+++++.
T Consensus 206 l~~n~l~~~----~~~~~~~~L~~L~l~~n~---l~~~~~~------------------------~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 206 AYVNQITDI----TPVANMTRLNSLKIGNNK---ITDLSPL------------------------ANLSQLTWLEIGTNQ 254 (347)
T ss_dssp CCSSCCCCC----GGGGGCTTCCEEECCSSC---CCCCGGG------------------------TTCTTCCEEECCSSC
T ss_pred cccCCCCCC----chhhcCCcCCEEEccCCc---cCCCcch------------------------hcCCCCCEEECCCCc
Confidence 888888766 457888888888876642 1111110 0111222233332
Q ss_pred --hhcccchhhhhccCCCCCCCcceecccccC-CCCCCCCcccccc-ccc-----c-hhhhhhhccCCCCcccchhhHHH
Q 035500 257 --YLRTMNLMELSSCLSPNLNGHAEMLDEVND-SNEFPGGAHKQDL-MDA-----N-VKLKKYISHHPSPICFEKHYREY 326 (606)
Q Consensus 257 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~-----~-v~L~~~l~~~~npi~~~~~YRey 326 (606)
.++.+..+..|+.|++.+|++-.+ +.+.. +++..+.+.++.+ ... . -.|+ ++.+.+|++.....
T Consensus 255 l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~---- 328 (347)
T 4fmz_A 255 ISDINAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT-TLFLSQNHITDIRP---- 328 (347)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS-EEECCSSSCCCCGG----
T ss_pred cCCChhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC-EEEccCCccccccC----
Confidence 234455556777777777766655 33333 4555555555544 111 1 1445 56666666665433
Q ss_pred HHhhCCCceecc
Q 035500 327 MIASLPQLEVLD 338 (606)
Q Consensus 327 vI~~Lp~LkvLD 338 (606)
+..++.|+.+|
T Consensus 329 -~~~l~~L~~L~ 339 (347)
T 4fmz_A 329 -LASLSKMDSAD 339 (347)
T ss_dssp -GGGCTTCSEES
T ss_pred -hhhhhccceee
Confidence 44566666555
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.3e-08 Score=103.35 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=75.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..+++++|+++.+..-.... +..=-.=+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.++.+.|..+|+|+.|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF-DNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTT-TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC-SSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHH-hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC-CCcCCeeCHhHhhccccCcee
Confidence 56788888887654321111 112234577888888888775 56778888888888 778888888888888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+.+|++..+. ..++.++++|++|.+..
T Consensus 142 ~L~~N~i~~~~--~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 142 WLRNNPIESIP--SYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp ECCSCCCCEEC--TTTTTTCTTCCEEECCC
T ss_pred eCCCCcccccC--HHHhhhCcccCEeCCCC
Confidence 88888887662 23577788888887665
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-06 Score=84.85 Aligned_cols=154 Identities=8% Similarity=0.064 Sum_probs=107.5
Q ss_pred eeEEEEcCCCCCEEEEEeCC---------------CcEEEEECCCCceEEEEeccCCCCCEEEEEEe----eCCCCEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---------------GEVIVINHENGNVACYIPSIGGTNSVLGLCWL----KKYPSKLVA 500 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---------------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fs----p~~~~~LaS 500 (606)
+.+++++| ++++.++...+ +.|..||.. ++..... .+.....+++|+ |++...+++
T Consensus 119 ~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~---~~~~~~~~i~~~~~~d~dg~~l~v~ 193 (314)
T 1pjx_A 119 CNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD---TAFQFPNGIAVRHMNDGRPYQLIVA 193 (314)
T ss_dssp CCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE---EEESSEEEEEEEECTTSCEEEEEEE
T ss_pred CcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec---cCCCCcceEEEecccCCCCCEEEEE
Confidence 77899999 88888877665 567778766 5544322 233457899999 843234455
Q ss_pred EECCCeEEEEeCCCCCCCcccccCCcceEEeecC--CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC
Q 035500 501 GSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF--EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHRE 578 (606)
Q Consensus 501 gS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~--~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~ 578 (606)
.+.++.|.+||...... +........+..+ .....+++.++|+++++...++.|..||..+++.+..+. .+..
T Consensus 194 ~~~~~~i~~~~~~~~g~----~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~~~ 268 (314)
T 1pjx_A 194 ETPTKKLWSYDIKGPAK----IENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CPFE 268 (314)
T ss_dssp ETTTTEEEEEEEEETTE----EEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CSSS
T ss_pred ECCCCeEEEEECCCCCc----cccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CCCC
Confidence 56789999999762110 0000112222222 447889999999999988888999999998888777777 4668
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 579 PINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
.+.+++|+|++..+++++..++.|.
T Consensus 269 ~~~~i~~~~dg~~l~v~~~~~~~l~ 293 (314)
T 1pjx_A 269 KPSNLHFKPQTKTIFVTEHENNAVW 293 (314)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CceeEEECCCCCEEEEEeCCCCeEE
Confidence 8999999999987777777665543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-06 Score=88.47 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=89.6
Q ss_pred eeEEEEcCCCCCEEEEEeCC---C--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC----------
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---G--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS---------- 504 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---G--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D---------- 504 (606)
+.+++|+| +|+.||.++.+ + .|.+||+.+++...... +.. +..++|+| ++..|+.++.+
T Consensus 61 ~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 61 ATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSSKKILE---AKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp CEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE---ESE-EEEEEECT-TSSEEEEEEECCCC-------
T ss_pred CCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCceEEEEc---CCC-ccceeECC-CCCEEEEEEccCCCcCCcEEE
Confidence 56789999 99999988754 3 47888888877655433 223 99999999 56777776632
Q ss_pred -----------------CeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC-------cEEE
Q 035500 505 -----------------GCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK-------NVAL 560 (606)
Q Consensus 505 -----------------gtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg-------~I~I 560 (606)
..|.+||+.++ ..+..+... .+..++|+|+| ++++++.++ ...+
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~----------~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l 202 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESE----------EVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDI 202 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTT----------EEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEE
T ss_pred cccceeecCcccccCccceEEEEECCCC----------eEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccE
Confidence 57888998763 221222222 78899999999 888776542 3445
Q ss_pred EECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 561 YDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 561 WDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
|.+.+++. ..+. .+ ..+..+ +|+|.+++.++..
T Consensus 203 ~~~d~~~~-~~l~-~~-~~~~~~--spdg~~l~~~~~~ 235 (347)
T 2gop_A 203 YIWEDGKE-EKMF-EK-VSFYAV--DSDGERILLYGKP 235 (347)
T ss_dssp EEEETTEE-EEEE-EE-ESEEEE--EECSSCEEEEECC
T ss_pred EEeCCCce-EEec-cC-cceeeE--CCCCCEEEEEEcc
Confidence 54445544 3343 24 455544 9999986555543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.1e-08 Score=103.03 Aligned_cols=105 Identities=21% Similarity=0.294 Sum_probs=66.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+..-.. .-+..=.+=+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.++...|..+|+|+.|
T Consensus 88 ~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC-SCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC-CCcccccCHHHhhhCcccCEe
Confidence 468888888765532111 11111123466888888777775 36677778888887 777777777777777777777
Q ss_pred Eccc-ccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCE-TRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~-~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+ +++..+ ...++.+|++|++|.+..|
T Consensus 166 ~l~~~~~l~~i--~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 166 DLGELKRLSYI--SEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp ECCCCTTCCEE--CTTTTTTCSSCCEEECTTS
T ss_pred CCCCCCCccee--CcchhhcccccCeecCCCC
Confidence 7776 334333 1134666777777776553
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.49 E-value=9.3e-07 Score=100.56 Aligned_cols=140 Identities=8% Similarity=-0.032 Sum_probs=96.5
Q ss_pred eeEEEEcCCCCCEEE-----EEeCCCcEEEEECCCCceEEEEeccCCCCCE--EEEEEeeCCCCEEEEEECCCe------
Q 035500 440 PRQFEYNPSNPSLMA-----FGTLDGEVIVINHENGNVACYIPSIGGTNSV--LGLCWLKKYPSKLVAGSDSGC------ 506 (606)
Q Consensus 440 V~slafsP~dg~~La-----SGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V--~~L~fsp~~~~~LaSgS~Dgt------ 506 (606)
+..++||| ||++|| .|+.+.+|++||+.+++.... .+...+ .+++|+| ++..|+.++.|..
T Consensus 123 ~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~----~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 123 LGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV----DVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp EEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSS----CCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred EEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCC----cccCcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 77889999 999999 445567899999999886511 121222 6789999 5678888888876
Q ss_pred -------EEEEeCCCCCCCcccccCCcceEEeec--C-CCeEEEEEccCCCEEEEEeCCC----cEEEEECCCCceeEEE
Q 035500 507 -------VRLFDLNHIPPKVADARGNSSVATYYD--F-EQLTSVHVNSTDDQFLASGYSK----NVALYDINTEKPLQLF 572 (606)
Q Consensus 507 -------IklWDl~~~~~~~~~l~~~~~i~t~~~--~-~~V~sV~~sp~g~~LaSgs~Dg----~I~IWDlrt~k~v~~l 572 (606)
|++|++.++.. .....+.. + ..+.++.|+|+|++++.++.++ .|.+||..+++.. .+
T Consensus 197 ~~~~~~~v~~~~l~t~~~--------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l 267 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPS--------KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LL 267 (695)
T ss_dssp GGGGGCEEEEEETTSCGG--------GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EE
T ss_pred cCCCCCEEEEEECCCCch--------hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Ee
Confidence 99999987421 12233332 2 4588999999999887776655 6777776555543 34
Q ss_pred cCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 573 TDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
. .+...+....| |++. +++++.
T Consensus 268 ~-~~~~~~~~~~~-~~g~-l~~~s~ 289 (695)
T 2bkl_A 268 V-KGVGAKYEVHA-WKDR-FYVLTD 289 (695)
T ss_dssp E-ECSSCCEEEEE-ETTE-EEEEEC
T ss_pred e-cCCCceEEEEe-cCCc-EEEEEC
Confidence 4 35556666666 5666 666665
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-07 Score=95.28 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=58.3
Q ss_pred cceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcc
Q 035500 101 KLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~ 180 (606)
+|+.+++.++.+. .+..+. .=..-++|+|++|.+..+..++.+++|++|+|. +|.|+.+....|..+|+|+.|.|.
T Consensus 42 ~L~~L~l~~~~i~--~~~~l~-~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIK--SVQGIQ-YLPNVRYLALGGNKLHDISALKELTNLTYLILT-GNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCC--CCTTGG-GCTTCCEEECTTSCCCCCGGGTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCcc--cccccc-cCCCCcEEECCCCCCCCchhhcCCCCCCEEECC-CCccCccChhHhcCCcCCCEEECC
Confidence 4566666664332 122211 112335566666666666666666667777776 566666666666666777777776
Q ss_pred cccccchhhhhHHhhcCCchhhhhhcee
Q 035500 181 ETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 181 ~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
+|++..+-. ..+.++++|++|.+..|
T Consensus 118 ~n~l~~~~~--~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 118 ENQLQSLPD--GVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp TSCCCCCCT--TTTTTCTTCCEEECCSS
T ss_pred CCcCCccCH--HHhccCCCCCEEECCCC
Confidence 666654411 12556666666665543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-07 Score=102.06 Aligned_cols=104 Identities=22% Similarity=0.242 Sum_probs=73.5
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..||.++|+++.+..-.- +-+..=..=+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.++.+.|..+|+|+.|
T Consensus 75 ~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF-DNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC-CCcCCccChhhhcccCCCCEE
Confidence 577888888866543111 11111124567888888888774 56778888888888 778888888888888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|++..+. ..++.++++|++|.+..
T Consensus 153 ~L~~N~l~~~~--~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 153 WLRNNPIESIP--SYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp ECCSCCCCEEC--TTTTTTCTTCCEEECCC
T ss_pred ECCCCCcceeC--HhHHhcCCcccEEeCCC
Confidence 88888887652 23567788888887665
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-07 Score=95.88 Aligned_cols=146 Identities=12% Similarity=0.141 Sum_probs=101.2
Q ss_pred CCchhHHHHhhhcCcCccceeeeccCCCcccchhHHHHHHHHhh-ccceEEEccCccccchHHHhhc-cCCCceeEEEcc
Q 035500 56 ADIYPLIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAID-QKLRVVDLSNITLRNDNLLDLC-QVGSSCHVLILR 133 (606)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 133 (606)
.|...+.+++... .+..+++ ..+.+.+..+..+.+.++ .+|+.++|+++.+....-..++ ..-.+=+.|+|+
T Consensus 52 ~~~~~~~~~~~~~---~l~~l~l---~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls 125 (310)
T 4glp_A 52 ADPRQYADTVKAL---RVRRLTV---GAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLR 125 (310)
T ss_dssp SCCSSSSGGGSSC---CCCEEEE---CSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEE
T ss_pred CCHHHHHHHhhhc---ceeEEEE---eCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEee
Confidence 4444444444433 2333333 345667777777777665 4699999999887655444443 444456789999
Q ss_pred ccchhcc------ccccccccccEEecccCCCcccccccccccCccccEEEcccccccchh--hhhHHhhcCCchhhhhh
Q 035500 134 ATNIRKL------NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLW--TTTAAISKLPYLMELRF 205 (606)
Q Consensus 134 ~~~~~~l------~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~--~~~~~l~~~~~l~~l~~ 205 (606)
.|+|... ..+..+++|++|+|. .|.|+.+...-|..||+|+.|.|.+|++...- .....+.++|+|++|.+
T Consensus 126 ~n~i~~~~~~~~~~~~~~~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 126 NVSWATGRSWLAELQQWLKPGLKVLSIA-QAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp SCCCSSTTSSHHHHHTTBCSCCCEEEEE-CCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC
T ss_pred cccccchhhhhHHHHhhhccCCCEEEee-CCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC
Confidence 9999862 122368899999999 89999998888999999999999999875320 11122368899999987
Q ss_pred cee
Q 035500 206 QMC 208 (606)
Q Consensus 206 ~~~ 208 (606)
..|
T Consensus 205 s~N 207 (310)
T 4glp_A 205 RNT 207 (310)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-07 Score=99.95 Aligned_cols=98 Identities=17% Similarity=0.266 Sum_probs=76.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+||++||+++.+..-. . ...=..=+.|+|++|++..+..++.+.+|++|.|. +|.|+.++. |..+|+|+.|.+
T Consensus 68 ~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~-~n~l~~~~~--~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF-NNQITDIDP--LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCch--h-hhccccCCEEECCCCccccChhhcCCCCCCEEECC-CCCCCCChH--HcCCCCCCEEEC
Confidence 57899999987654321 1 11122446799999999888888899999999998 778998865 889999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+ .++.++++|++|.+.+
T Consensus 142 ~~n~l~~~----~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 142 SSNTISDI----SALSGLTSLQQLSFGN 165 (466)
T ss_dssp EEEEECCC----GGGTTCTTCSEEEEEE
T ss_pred CCCccCCC----hhhccCCcccEeecCC
Confidence 99988876 6788889999888754
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-07 Score=96.76 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=61.1
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc----c-cccccccEEecccCCCcccccc--cccccC
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM----V-GRFMHLNTLSLDFCSSLASLHE--DCFSCM 171 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~l~tl~l~~~~~~~~~~~--~~~~~~ 171 (606)
|.--+.+||+. |..| .+|...|+. ++.|+..-+.. + ..|++|++|+|. +|.|+.+.. +.+..+
T Consensus 126 n~~~~~LdLs~--l~~d--p~L~~~~l~-----l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls-~N~l~~l~~l~~~~~~l 195 (267)
T 3rw6_A 126 DGSQQALDLKG--LRSD--PDLVAQNID-----VVLNRRSCMAATLRIIEENIPELLSLNLS-NNRLYRLDDMSSIVQKA 195 (267)
T ss_dssp ETTTTEEECTT--GGGC--HHHHHTTCC-----CCTTSHHHHHHHHHHHHHHCTTCCEEECT-TSCCCCCGGGTTHHHHS
T ss_pred chhccccCHHH--cCCC--cchhhcCcc-----ccCCHHHHHHHHHHHHHhhCCCCCEEECC-CCCCCCCccchhHHhhC
Confidence 44467788887 4444 355555543 44554333321 1 358899999999 999999874 667799
Q ss_pred ccccEEEcccccccchhhhhHHhhcCCc
Q 035500 172 PYLMCLSMCETRIVNLWTTTAAISKLPY 199 (606)
Q Consensus 172 p~l~~l~~~~~~~~~l~~~~~~l~~~~~ 199 (606)
|+|+.|.|.+|+|..+ ++|.+|..
T Consensus 196 ~~L~~L~Ls~N~i~~~----~~l~~l~~ 219 (267)
T 3rw6_A 196 PNLKILNLSGNELKSE----RELDKIKG 219 (267)
T ss_dssp TTCCEEECTTSCCCSG----GGGGGGTT
T ss_pred CCCCEEECCCCccCCc----hhhhhccc
Confidence 9999999999999977 55555553
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3.4e-06 Score=82.64 Aligned_cols=149 Identities=12% Similarity=0.112 Sum_probs=104.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++++| +++++++.. ++.|.+||...+... .+.. .....+.++++++ ++..+++...++.|.+|+......
T Consensus 69 p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~-~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~-- 141 (270)
T 1rwi_B 69 PQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQT-VLPF-DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQ-- 141 (270)
T ss_dssp CCCEEECT-TCCEEEEET-TTEEEEECTTCSCCE-ECCC-CSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSC--
T ss_pred cceeEECC-CCCEEEEcC-CCEEEEEeCCCceEe-eeec-CCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCcee--
Confidence 67889999 788666665 899999998765443 2221 3335789999998 557777777889999997554211
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
......+...+.+++++|+++++++...++.|..||........... .+...+..++++|+| .++++...+
T Consensus 142 -------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~g-~l~v~~~~~ 212 (270)
T 1rwi_B 142 -------TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-TDITAPWGIAVDEAG-TVYVTEHNT 212 (270)
T ss_dssp -------EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-SSCCSEEEEEECTTC-CEEEEETTT
T ss_pred -------EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc-cCCCCceEEEECCCC-CEEEEECCC
Confidence 11111122457889999999988888788999999998765543322 344778999999998 577777767
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
+.|..
T Consensus 213 ~~v~~ 217 (270)
T 1rwi_B 213 NQVVK 217 (270)
T ss_dssp SCEEE
T ss_pred CcEEE
Confidence 66543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-06 Score=88.64 Aligned_cols=145 Identities=11% Similarity=0.114 Sum_probs=94.5
Q ss_pred eeEEEEcCCCCCEEEEEeCC------CcEEEEECCCCceEEEEeccCC-CCCEEEEEEeeCCCCEEEEEECC-----CeE
Q 035500 440 PRQFEYNPSNPSLMAFGTLD------GEVIVINHENGNVACYIPSIGG-TNSVLGLCWLKKYPSKLVAGSDS-----GCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D------GtVrIWDi~tg~~v~~~~~~gH-~~~V~~L~fsp~~~~~LaSgS~D-----gtI 507 (606)
+..+.|+|.+++.++..+.+ ..|.+||...+....... .. ...+..++|+| ++..|+.++.+ +.|
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE--HAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC--CCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEE
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec--cCCCccccceEECC-CCCEEEEEecCCCCccceE
Confidence 66788999566767766544 468889987665433211 11 23578899999 45656555543 459
Q ss_pred EEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEe----------------CCCcEEEEECCCCceeE
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASG----------------YSKNVALYDINTEKPLQ 570 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs----------------~Dg~I~IWDlrt~k~v~ 570 (606)
.+||+.++.. ..+..+ .... +.|+| +|+++++++ .++.|.+||+.+++...
T Consensus 267 ~~~d~~~g~~--------~~l~~~---~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 334 (396)
T 3c5m_A 267 YKANPETLEN--------EEVMVM---PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK 334 (396)
T ss_dssp EEECTTTCCE--------EEEEEC---CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE
T ss_pred EEEECCCCCe--------EEeeeC---CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE
Confidence 9999987421 111111 1233 88999 999888765 34789999999887543
Q ss_pred EEcCCCCC-----------CeEEEEEeCCCCeEEEEEeCCCe
Q 035500 571 LFTDMHRE-----------PINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 571 ~l~~gH~~-----------~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
+. .|.. .+..++|+|+|.+++.++..++.
T Consensus 335 -l~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~ 374 (396)
T 3c5m_A 335 -LC-KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGV 374 (396)
T ss_dssp -EE-ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS
T ss_pred -cc-CCCCccccccccccCCCCCceEccCCCeEEEEecCCCC
Confidence 33 2333 25678999999987777666654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-07 Score=101.48 Aligned_cols=105 Identities=22% Similarity=0.274 Sum_probs=73.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+..-.. +-+..=.+=+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.++...|..+|+|+.|
T Consensus 99 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC-SCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC-CCCcceeCHhHHhcCCcccEE
Confidence 578999998876543211 111112345778888888887763 6778888888888 788888888888888888888
Q ss_pred Eccc-ccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCE-TRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~-~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+ +.+..+ ...++.++++|++|.+..|
T Consensus 177 ~l~~~~~l~~i--~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 177 DLGELKKLEYI--SEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp ECCCCTTCCEE--CTTTTTTCTTCCEEECTTS
T ss_pred eCCCCCCcccc--ChhhccCCCCCCEEECCCC
Confidence 8887 444443 1235677888888876654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-07 Score=96.75 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=41.8
Q ss_pred ceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHh-hcCCchhhhh
Q 035500 126 SCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAI-SKLPYLMELR 204 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l-~~~~~l~~l~ 204 (606)
.-+.|+|+.|+|..+.. +.|.+|++|.|. .|.|+.+...-|..+|+|+.|.+.+|++..+ ...++ ..+++|++|.
T Consensus 100 ~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 100 SIETLHAANNNISRVSC-SRGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--NFAELAASSDTLEHLN 175 (317)
T ss_dssp TCCEEECCSSCCSEEEE-CCCSSCEEEECC-SSCCCSGGGBCTGGGSSEEEEECTTSCCCEE--EGGGGGGGTTTCCEEE
T ss_pred CcCEEECCCCccCCcCc-cccCCCCEEECC-CCCCCCccchhhhccCCCCEEECCCCCCCcc--cHHHHhhccCcCCEEE
Confidence 33445555555544432 235566666666 5666666555566666666666666666543 11223 2455666665
Q ss_pred hce
Q 035500 205 FQM 207 (606)
Q Consensus 205 ~~~ 207 (606)
+..
T Consensus 176 L~~ 178 (317)
T 3o53_A 176 LQY 178 (317)
T ss_dssp CTT
T ss_pred CCC
Confidence 444
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-07 Score=100.40 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=92.5
Q ss_pred EeeccccCCCchhHHHHhhhcCcCccceeeeccCCCcccchhHHHHHHHHh--hccceEEEccCccccc------hHHHh
Q 035500 48 VYLDQLKNADIYPLIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAI--DQKLRVVDLSNITLRN------DNLLD 119 (606)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~------~~~~~ 119 (606)
+.++++.+.++.++.+.+..... +..+|+. .|.+...-+-.+-.++ ..+|+.++|+++..+. +.++.
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~--L~~L~L~---~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~ 85 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDS--VKEIVLS---GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSC--CCEEECT---TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCC--ccEEECC---CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH
Confidence 34556777777777777766543 6666663 3556665554444332 4678888888754331 23332
Q ss_pred hc---cCCCceeEEEccccchhc-----c-ccccccccccEEecccCCCcccccccccccC-------------ccccEE
Q 035500 120 LC---QVGSSCHVLILRATNIRK-----L-NMVGRFMHLNTLSLDFCSSLASLHEDCFSCM-------------PYLMCL 177 (606)
Q Consensus 120 ~~---~~~~~~~~~~~~~~~~~~-----l-~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~-------------p~l~~l 177 (606)
|+ ..-..=+.|+|++|.|.. + ..++.+++|++|+|. +|.|+.....-+..+ |+|+.|
T Consensus 86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH-NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECC-SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECc-CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 22 222344678888888776 2 244667788888888 667764433223322 788888
Q ss_pred Ecccccccc--hhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVN--LWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~--l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++.+ +-.-..++.++++|++|.+..|
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence 888887752 2111245667778887776554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-07 Score=106.93 Aligned_cols=188 Identities=12% Similarity=0.101 Sum_probs=134.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+||.++|+++.+.. +..+. .=..-+.|+|++|+|..+..++.+++|+.|.|. .|.|+.++ .|..||+|+.|.|
T Consensus 43 ~~L~~L~l~~n~i~~--l~~l~-~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls-~N~l~~l~--~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS--VQGIQ-YLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLD-ENKIKDLS--SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCC--CTTGG-GCTTCCEEECTTSCCCCCGGGGGCTTCCEEECC-SSCCCCCT--TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC--ChHHc-cCCCCCEEEeeCCCCCCChhhccCCCCCEEECc-CCCCCCCh--hhccCCCCCEEEe
Confidence 357888888754432 22221 123456799999999888888889999999999 78888886 4888999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhc
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLR 259 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (606)
.+|++..+ .++..|++|++|.+..|. -+ .++
T Consensus 117 s~N~l~~l----~~l~~l~~L~~L~Ls~N~---l~------------------------------------------~l~ 147 (605)
T 1m9s_A 117 EHNGISDI----NGLVHLPQLESLYLGNNK---IT------------------------------------------DIT 147 (605)
T ss_dssp TTSCCCCC----GGGGGCTTCSEEECCSSC---CC------------------------------------------CCG
T ss_pred cCCCCCCC----ccccCCCccCEEECCCCc---cC------------------------------------------Cch
Confidence 99988876 678888889888866542 00 113
Q ss_pred ccchhhhhccCCCCCCCcceecccccC-CCCCCCCcccccc-cccch----hhhhhhccCCCCcccchhhHHHHHhhCCC
Q 035500 260 TMNLMELSSCLSPNLNGHAEMLDEVND-SNEFPGGAHKQDL-MDANV----KLKKYISHHPSPICFEKHYREYMIASLPQ 333 (606)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~v----~L~~~l~~~~npi~~~~~YReyvI~~Lp~ 333 (606)
.+.-+..|..|++.+|++-.+.. +.. +++..+-+..|.+ .+..+ .|+ .+.+..|++...+.++..-+..++.
T Consensus 148 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~-~L~L~~N~l~~~p~~~~~~l~~~~~ 225 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLD-VLELFSQECLNKPINHQSNLVVPNT 225 (605)
T ss_dssp GGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCS-EEECCSEEEECCCCCCCSSCEEECC
T ss_pred hhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHccCCCCC-EEEccCCcCcCCcccccccEEeccc
Confidence 34556788999999998877766 555 6677777777766 44333 566 7888888888777666544455667
Q ss_pred ceeccCCCCCc
Q 035500 334 LEVLDNLPIGR 344 (606)
Q Consensus 334 LkvLD~~~i~~ 344 (606)
++.+|+..+..
T Consensus 226 l~~l~g~~~~~ 236 (605)
T 1m9s_A 226 VKNTDGSLVTP 236 (605)
T ss_dssp CBCSSSCBCCC
T ss_pred ccccCCCCcCc
Confidence 77777776654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.7e-06 Score=84.56 Aligned_cols=151 Identities=10% Similarity=0.064 Sum_probs=99.9
Q ss_pred eeEEEEcCCCCCEEEEEeC------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCC-EEEEEECCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTL------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPS-KLVAGSDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~-~LaSgS~DgtIklWDl 512 (606)
+..++++| +++++++... .+.|..||..+++..... .+...+.+++|+|+ +. ++++.+.++.|.+||.
T Consensus 137 ~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~i~~~~d-g~~l~v~~~~~~~i~~~d~ 211 (333)
T 2dg1_A 137 IDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII---QNISVANGIALSTD-EKVLWVTETTANRLHRIAL 211 (333)
T ss_dssp EEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE---EEESSEEEEEECTT-SSEEEEEEGGGTEEEEEEE
T ss_pred ccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEee---cCCCcccceEECCC-CCEEEEEeCCCCeEEEEEe
Confidence 77899999 8888877654 356667776655544322 22345789999984 45 4456667899999998
Q ss_pred CCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC------CCeEEEEEe
Q 035500 513 NHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHR------EPINVAKFS 586 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~------~~I~sV~fs 586 (606)
........... ......+..+..+..+++.++|+++++...++.|.+||. .++.+..+. .+. ..+.+++|+
T Consensus 212 ~~~g~~~~~~~-~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~-~~~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 212 EDDGVTIQPFG-ATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL-IPGRDEGHMLRSTHPQFI 288 (333)
T ss_dssp CTTSSSEEEEE-EEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE-CTTGGGTCSCBCCEEEEC
T ss_pred cCCCcCccccc-ceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE-cCCCccccccCcceEEEC
Confidence 64211000000 000111122235788999999999888888899999998 466666665 232 268999999
Q ss_pred CCCCeEEEEEeC
Q 035500 587 HHSPLCLLLLHL 598 (606)
Q Consensus 587 P~g~~LLaTgS~ 598 (606)
|++..+++++..
T Consensus 289 ~dg~~L~v~~~~ 300 (333)
T 2dg1_A 289 PGTNQLIICSND 300 (333)
T ss_dssp TTSCEEEEEEEC
T ss_pred CCCCEEEEEeCc
Confidence 998877766665
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-07 Score=91.49 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=59.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+..-.- +.+..=..=+.|+|+.|.|..+. .++.+++|++|+|..|..++.+....|..+|+|+.|
T Consensus 32 ~~l~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCH-HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 356666666655433110 11111123456777777666653 455666777777773333676666667777777777
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|++..+- ..++.++++|++|.+..
T Consensus 111 ~l~~n~l~~~~--~~~~~~l~~L~~L~l~~ 138 (285)
T 1ozn_A 111 HLDRCGLQELG--PGLFRGLAALQYLYLQD 138 (285)
T ss_dssp ECTTSCCCCCC--TTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCEEC--HhHhhCCcCCCEEECCC
Confidence 77777666441 13355666666666544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=8.3e-08 Score=107.66 Aligned_cols=87 Identities=20% Similarity=0.318 Sum_probs=70.9
Q ss_pred cchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhH
Q 035500 113 RNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTA 192 (606)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~ 192 (606)
+.+.+..+.... -++|+|++|.|..+..++.+.+|.+|+|+ .|.|+.|+. .|..||+|+.|.|.+|++..+ .
T Consensus 431 ~~n~i~~l~~~~--L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls-~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l----p 502 (567)
T 1dce_A 431 LENSVLKMEYAD--VRVLHLAHKDLTVLCHLEQLLLVTHLDLS-HNRLRALPP-ALAALRCLEVLQASDNALENV----D 502 (567)
T ss_dssp HHHHHHHHHHTT--CSEEECTTSCCSSCCCGGGGTTCCEEECC-SSCCCCCCG-GGGGCTTCCEEECCSSCCCCC----G
T ss_pred hcccccccCccC--ceEEEecCCCCCCCcCccccccCcEeecC-cccccccch-hhhcCCCCCEEECCCCCCCCC----c
Confidence 333444443333 46799999999999889999999999999 889999975 689999999999999999876 5
Q ss_pred HhhcCCchhhhhhce
Q 035500 193 AISKLPYLMELRFQM 207 (606)
Q Consensus 193 ~l~~~~~l~~l~~~~ 207 (606)
.+.+|++|++|.+..
T Consensus 503 ~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 503 GVANLPRLQELLLCN 517 (567)
T ss_dssp GGTTCSSCCEEECCS
T ss_pred ccCCCCCCcEEECCC
Confidence 788899999887554
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-06 Score=89.19 Aligned_cols=136 Identities=9% Similarity=0.036 Sum_probs=93.3
Q ss_pred CCCEEEEEe------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------CCCeEEEEeC
Q 035500 449 NPSLMAFGT------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----------DSGCVRLFDL 512 (606)
Q Consensus 449 dg~~LaSGs------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----------~DgtIklWDl 512 (606)
++.++++.. .|++|.+||..+++.+..+. .+..+ .++|+| +++++++++ .+++|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~--~g~~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVP--TAFNG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEE--CCEEE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEec--CCCCC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 555555543 47899999999999887665 34433 899999 567777775 3678999998
Q ss_pred CCCCCCcccccCCcceEEeec-------CCCeEEEEEccCCCEEEEEeC--CCcEEEEECCCCceeEE-EcCCCCCCeEE
Q 035500 513 NHIPPKVADARGNSSVATYYD-------FEQLTSVHVNSTDDQFLASGY--SKNVALYDINTEKPLQL-FTDMHREPINV 582 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~-------~~~V~sV~~sp~g~~LaSgs~--Dg~I~IWDlrt~k~v~~-l~~gH~~~I~s 582 (606)
.+. ..+.++.. ......++++|+|++++++.. +++|.+||+.+++.+.. ++. .....
T Consensus 89 ~t~----------~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~~~~~ 155 (361)
T 2oiz_A 89 DKL----------TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---AGCWS 155 (361)
T ss_dssp TTC----------CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---TTEEE
T ss_pred cCC----------cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC---CCcce
Confidence 863 33444331 234678999999998888864 68999999999988877 652 12223
Q ss_pred EEEeCCCCeEEEEEeCCCeE
Q 035500 583 AKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~DgtI 602 (606)
+.+.|.+...+++.+.|+.+
T Consensus 156 v~~~p~~~~~~~~~~~dg~~ 175 (361)
T 2oiz_A 156 VIPQPNRPRSFMTICGDGGL 175 (361)
T ss_dssp EEECTTSSSEEEEEETTSSE
T ss_pred eEEcCCCCeeEEEECCCCcE
Confidence 44555554445555555543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.41 E-value=3e-07 Score=92.36 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=6.7
Q ss_pred hhccCCCCccc
Q 035500 309 YISHHPSPICF 319 (606)
Q Consensus 309 ~l~~~~npi~~ 319 (606)
++.+.+||..+
T Consensus 209 ~L~l~~N~~~c 219 (270)
T 2o6q_A 209 MLQLQENPWDC 219 (270)
T ss_dssp EEECCSSCBCC
T ss_pred EEEecCCCeeC
Confidence 56666677653
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.1e-06 Score=84.10 Aligned_cols=138 Identities=11% Similarity=0.020 Sum_probs=104.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCC-CCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGT-NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSS 527 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~-~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~ 527 (606)
.++++++++.|+.|.+||.++|+.+..+. .+. ..+.++.+.| ++++++ +.++.|..||. ++ +.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G----------~~ 67 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--LEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DG----------RE 67 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE--CCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TS----------CE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC--CCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CC----------CE
Confidence 35799999999999999999999998877 333 4688899998 567777 45788999998 42 23
Q ss_pred eEEeecC--CCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeEEEcC-----CCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 528 VATYYDF--EQLTSVHVNSTDDQFLASGY-SKNVALYDINTEKPLQLFTD-----MHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 528 i~t~~~~--~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt~k~v~~l~~-----gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
+-.+... ..+.++.+.|+|+++++.+. ++.+..+|. .++.+..+.. ++......+++.++|. ++++.+.+
T Consensus 68 ~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~ 145 (276)
T 3no2_A 68 LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFAT 145 (276)
T ss_dssp EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTT
T ss_pred EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCC
Confidence 4445432 45889999999999999887 778888886 6777766652 1223455677888888 57788888
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
+.|.+
T Consensus 146 ~~v~~ 150 (276)
T 3no2_A 146 SEVRE 150 (276)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 88876
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.2e-07 Score=91.97 Aligned_cols=141 Identities=6% Similarity=-0.111 Sum_probs=92.0
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEE-------------------EEEeeCCCCEEEEE--
Q 035500 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLG-------------------LCWLKKYPSKLVAG-- 501 (606)
Q Consensus 443 lafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~-------------------L~fsp~~~~~LaSg-- 501 (606)
+.|+| +++.|+.++.++.|++||..+++...... .+...... ..|+| ++..++.+
T Consensus 86 ~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~ 161 (396)
T 3c5m_A 86 GFIST-DERAFFYVKNELNLMKVDLETLEEQVIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEF 161 (396)
T ss_dssp CEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHH
T ss_pred ceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEe--cccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeee
Confidence 56999 99999999999999999999887665443 23221111 23444 22333222
Q ss_pred ---ECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCC------CcEEEEECCCCceeEE
Q 035500 502 ---SDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYS------KNVALYDINTEKPLQL 571 (606)
Q Consensus 502 ---S~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~D------g~I~IWDlrt~k~v~~ 571 (606)
..+..|.+||+.++ .......+...+..+.|+| ++..++..+.+ ..|.+||+..++.. .
T Consensus 162 ~~~~~~~~l~~~d~~~g----------~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~ 230 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETG----------ELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-K 230 (396)
T ss_dssp HHTCCCEEEEEEETTTC----------CEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-E
T ss_pred ccCCCcceEEEEECCCC----------cEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-E
Confidence 45668999998873 2233334556689999999 77766665543 46888998766543 3
Q ss_pred EcCCC-CCCeEEEEEeCCCCeEEEEEeC
Q 035500 572 FTDMH-REPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 572 l~~gH-~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
+.... ...+..++|+|+|.+++.++..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (396)
T 3c5m_A 231 IKEHAEGESCTHEFWIPDGSAMAYVSYF 258 (396)
T ss_dssp SSCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred eeccCCCccccceEECCCCCEEEEEecC
Confidence 33111 2358889999999986655443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.1e-06 Score=83.25 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=101.7
Q ss_pred ceeEEEEcCCCCCEEEE----Ee-------------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE
Q 035500 439 RPRQFEYNPSNPSLMAF----GT-------------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG 501 (606)
Q Consensus 439 rV~slafsP~dg~~LaS----Gs-------------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg 501 (606)
.+..++++| +|+++++ |+ ..+.|..|+.. ++... + ..+.....+++|+| ++..+++.
T Consensus 116 ~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~--~~~~~~~~gi~~s~-dg~~lv~~ 189 (296)
T 3e5z_A 116 SPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA-P--IRDRVKPNGLAFLP-SGNLLVSD 189 (296)
T ss_dssp CCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-E--ECCCSSEEEEEECT-TSCEEEEE
T ss_pred CCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE-e--ecCCCCCccEEECC-CCCEEEEe
Confidence 367789999 8998887 33 13456666655 44432 2 25566789999999 55666888
Q ss_pred ECCCeEEEEeCCCCCCCcccccCC-cceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 035500 502 SDSGCVRLFDLNHIPPKVADARGN-SSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP 579 (606)
Q Consensus 502 S~DgtIklWDl~~~~~~~~~l~~~-~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~ 579 (606)
+.++.|.+||+..... . .....+. +...+.++++.++|+++++. ++.|.+||.. ++.+..+. .+..
T Consensus 190 ~~~~~i~~~~~~~~g~-------~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~-~~~~- 257 (296)
T 3e5z_A 190 TGDNATHRYCLNARGE-------TEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL-TPQT- 257 (296)
T ss_dssp TTTTEEEEEEECSSSC-------EEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE-CSSC-
T ss_pred CCCCeEEEEEECCCCc-------CcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE-CCCC-
Confidence 8899999999973111 0 0112222 22346789999999977776 7899999987 77777777 4656
Q ss_pred eEEEEE-eCCCCeEEEEEeCCCeEEE
Q 035500 580 INVAKF-SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~f-sP~g~~LLaTgS~DgtIRc 604 (606)
+++++| .|++..+++ ++.++..|.
T Consensus 258 ~~~~~f~~~d~~~L~v-~t~~~l~~~ 282 (296)
T 3e5z_A 258 TSNLCFGGPEGRTLYM-TVSTEFWSI 282 (296)
T ss_dssp CCEEEEESTTSCEEEE-EETTEEEEE
T ss_pred ceeEEEECCCCCEEEE-EcCCeEEEE
Confidence 999999 588887555 455777764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.4e-06 Score=85.44 Aligned_cols=145 Identities=12% Similarity=0.006 Sum_probs=102.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC---CCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG---GTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g---H~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~ 515 (606)
++.++++| ++.+.++...++.|.+||..+++....+.... +.....++++ . ++..+++.. .+++|.+||..+.
T Consensus 86 p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 86 PRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp EEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTT
T ss_pred CcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCC
Confidence 77889988 67555444489999999999998887666422 1113556777 2 434444443 4899999999873
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC----------CcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS----------KNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D----------g~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
..+.++........+.++|+|++++++..+ +.|.+||..+++....+..+.....+.++|
T Consensus 163 ----------~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 163 ----------KVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp ----------EEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred ----------eEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence 334445444446788899999877777654 789999999998877776322347899999
Q ss_pred eCCCCeEEEEEe
Q 035500 586 SHHSPLCLLLLH 597 (606)
Q Consensus 586 sP~g~~LLaTgS 597 (606)
+|++..++++.+
T Consensus 233 ~~d~~~lyv~~~ 244 (328)
T 3dsm_A 233 NGTRDTLYWINN 244 (328)
T ss_dssp CTTSCEEEEESS
T ss_pred ecCCCEEEEEcc
Confidence 999998776543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.39 E-value=5.3e-07 Score=89.51 Aligned_cols=104 Identities=22% Similarity=0.211 Sum_probs=65.0
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..|+.++|+++.+..-.-. .+..=.+=+.|+|++|+|..+.. ++.+.+|++|+|. +|.|+.++.+.|..+|+|+.|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC-CCcccccChhHhcccCCCCEE
Confidence 4667777777655432111 11111244667777777777653 5667777777777 777777777777777777777
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|++..+- ..++.++++|++|.+..
T Consensus 113 ~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 113 YLGGNQLKSLP--SGVFDRLTKLKELRLNT 140 (251)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCS
T ss_pred EcCCCcCCCcC--hhHhccCCcccEEECcC
Confidence 77777776542 12256677777776544
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=6.6e-07 Score=94.38 Aligned_cols=132 Identities=16% Similarity=0.202 Sum_probs=76.6
Q ss_pred cCcCccceeeeccCCCcccchhHHHHHHHHhhccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccc
Q 035500 68 MDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGR 145 (606)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~ 145 (606)
++-+.+..+|+.+..--.+..+.. .. -.+||+++|+++.+..-.-. -+..=..=+.|+|++|+|..+. .++.
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~----~~-l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALL----DS-FRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHH----HH-CCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccCCceEEEecCCchhhCChhHh----cc-cccCcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 344566666665433333333211 11 14677777777654321100 1111123466777777777763 3567
Q ss_pred cccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 146 FMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 146 ~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
+++|++|.|. .|.|+.++...|..+|+|+.|.+.+|++..+- ..++.++++|++|.+..+
T Consensus 116 l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 116 VPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp CTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSS
T ss_pred CCCCCEEECC-CCccCcCCHHHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCC
Confidence 7777777777 66777777777777777777777777776541 123666777777766553
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3.8e-07 Score=93.15 Aligned_cols=103 Identities=26% Similarity=0.238 Sum_probs=55.2
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
..+++++|+++.++.-.-..+ ..=..=+.|+|+.|+|..+...+.+++|++|.|. .|.|+.++. .|..+|+|+.|.|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~l~~-~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS-HNQLQSLPL-LGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGG-TTCTTCCEEECTTSCCCEEECCSCCTTCCEEECC-SSCCSSCCC-CTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHh-hcCCCCCEEECCCCccCcccCCCCCCcCCEEECC-CCcCCcCch-hhccCCCCCEEEC
Confidence 355666666655543211111 1112334566666666666655666666666666 556666653 3556666666666
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+- ..++.++++|++|.+..
T Consensus 108 ~~N~l~~l~--~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 108 SFNRLTSLP--LGALRGLGELQELYLKG 133 (290)
T ss_dssp CSSCCCCCC--SSTTTTCTTCCEEECTT
T ss_pred CCCcCcccC--HHHHcCCCCCCEEECCC
Confidence 666665441 12355566666665444
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.1e-07 Score=91.34 Aligned_cols=103 Identities=27% Similarity=0.238 Sum_probs=56.2
Q ss_pred cceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEEE
Q 035500 101 KLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
.|+.++|+++.+..-.-.. +..=..=++|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+..+.|..||+|+.|.
T Consensus 29 ~l~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTT-TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhH-hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC-CCccCccChhhhcCCccccEEE
Confidence 5666666665443211101 1111234556666666666552 5566666666666 6666666666666666666666
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhce
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+.+|++..+-. .++.++++|++|.+..
T Consensus 107 l~~n~l~~~~~--~~~~~l~~L~~L~l~~ 133 (276)
T 2z62_A 107 AVETNLASLEN--FPIGHLKTLKELNVAH 133 (276)
T ss_dssp CTTSCCCCSTT--CCCTTCTTCCEEECCS
T ss_pred CCCCCccccCc--hhcccCCCCCEEECcC
Confidence 66666655421 1255666666665443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.9e-07 Score=91.51 Aligned_cols=104 Identities=24% Similarity=0.306 Sum_probs=61.5
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+||.++|+++.+.. .-...+..=.+=+.|+|++|+|..+. .++.+++|++|.|. .|.|+.+....|..||+|+.|
T Consensus 61 ~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD-RNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp TTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC-CCccCeeCHHHhCcCcCCCEE
Confidence 466777776655431 11111222223456777777776665 34566677777777 667777766667777777777
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|++..+- ..++.++++|++|.+..
T Consensus 139 ~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 139 SLGYNELQSLP--KGVFDKLTSLKELRLYN 166 (270)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCccC--HhHccCCcccceeEecC
Confidence 77777666542 12356667777766544
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.9e-07 Score=95.36 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=42.9
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
++|+|++|+|..+. .++.+.+|++|.|. .|.|+.+..+.|..+|+|+.|.+.+|++..+.. ..+.++++|++|.+
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSM 148 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEEC
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECC-CCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH--HHhcCCCCCcEEEC
Confidence 45666666665553 34556666666666 555666655556666666666666665554421 11345555666655
Q ss_pred ce
Q 035500 206 QM 207 (606)
Q Consensus 206 ~~ 207 (606)
..
T Consensus 149 ~~ 150 (390)
T 3o6n_A 149 SN 150 (390)
T ss_dssp CS
T ss_pred CC
Confidence 44
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-05 Score=91.19 Aligned_cols=157 Identities=8% Similarity=-0.020 Sum_probs=104.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCc----------------EEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGE----------------VIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAG 501 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGt----------------VrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSg 501 (606)
+..++|+| |++.|+.++.++. |++|++.++.. ...+....|...+.++.|+| ++.+|+.+
T Consensus 173 ~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~ 250 (710)
T 2xdw_A 173 FSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLS 250 (710)
T ss_dssp SCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEE
T ss_pred cceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEE
Confidence 45688999 9999999998876 99999988763 22333334666788999999 56777666
Q ss_pred EC-----CCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCC----CcEEEEECCCCce--e
Q 035500 502 SD-----SGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYS----KNVALYDINTEKP--L 569 (606)
Q Consensus 502 S~-----DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~D----g~I~IWDlrt~k~--v 569 (606)
+. +..|.+||+...... ..+......+. +...+.. .|+|+|+.++..+.. +.|.+||+.++.. .
T Consensus 251 ~~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 251 IREGCDPVNRLWYCDLQQESNG---ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW 326 (710)
T ss_dssp EECSSSSCCEEEEEEGGGSSSS---SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred EEccCCCccEEEEEECcccccc---cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence 54 678999998751000 00011233333 3334444 478888877666543 4699999988752 3
Q ss_pred EEEcCCCCC--CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 570 QLFTDMHRE--PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 570 ~~l~~gH~~--~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+. .|.. .+..+.|+++ .++++++..|+..+.
T Consensus 327 ~~l~-~~~~~~~~~~~~~~~~-~~lv~~~~~~g~~~l 361 (710)
T 2xdw_A 327 KVLV-PEHEKDVLEWVACVRS-NFLVLCYLHDVKNTL 361 (710)
T ss_dssp EEEE-CCCSSCEEEEEEEETT-TEEEEEEEETTEEEE
T ss_pred eecc-CCCCCCeEEEEEEEcC-CEEEEEEEECCEEEE
Confidence 4444 3433 6888999865 457888888886654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-07 Score=96.35 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=86.0
Q ss_pred cchhHHHHHHHHhh-ccceEEEccCccccchHHHhhc-cCCCceeEEEccccchhccc-ccccc-----ccccEEecccC
Q 035500 86 LKEEYIMSLMHAID-QKLRVVDLSNITLRNDNLLDLC-QVGSSCHVLILRATNIRKLN-MVGRF-----MHLNTLSLDFC 157 (606)
Q Consensus 86 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~~~~-----~~l~tl~l~~~ 157 (606)
+.++.....++..+ .+|+.++|+++.+....-..++ ..-.+=+.|+|++|+|..+. .++.+ ++|++|.|. .
T Consensus 80 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~-~ 158 (312)
T 1wwl_A 80 IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA-Q 158 (312)
T ss_dssp CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEE-S
T ss_pred cCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEee-C
Confidence 34444444444433 5899999999877643333332 22334578999999988763 23344 899999999 8
Q ss_pred CCcccccccccccCccccEEEcccccccchhhhhHHh--hcCCchhhhhhcee
Q 035500 158 SSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAI--SKLPYLMELRFQMC 208 (606)
Q Consensus 158 ~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l--~~~~~l~~l~~~~~ 208 (606)
|.|+.+..+-|..||+|+.|.|.+|++..-.....++ .++++|++|.+..|
T Consensus 159 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 8999998888999999999999999865432233455 78899999987664
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.5e-07 Score=88.60 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=66.2
Q ss_pred eeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 127 CHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
-+.|+|+.|+|..+..++.+++|++|.|. +|.++.++ .|..||+|+.|.+.+|++... ....+.++++|++|.+.
T Consensus 46 L~~L~l~~n~i~~l~~l~~l~~L~~L~l~-~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 46 LTYITLANINVTDLTGIEYAHNIKDLTIN-NIHATNYN--PISGLSNLERLRIMGKDVTSD--KIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp CCEEEEESSCCSCCTTGGGCTTCSEEEEE-SCCCSCCG--GGTTCTTCCEEEEECTTCBGG--GSCCCTTCTTCCEEECC
T ss_pred ccEEeccCCCccChHHHhcCCCCCEEEcc-CCCCCcch--hhhcCCCCCEEEeECCccCcc--cChhhcCCCCCCEEEec
Confidence 46799999999999988999999999999 66999885 599999999999999999862 23567889999999866
Q ss_pred ee
Q 035500 207 MC 208 (606)
Q Consensus 207 ~~ 208 (606)
.|
T Consensus 121 ~n 122 (197)
T 4ezg_A 121 HS 122 (197)
T ss_dssp SS
T ss_pred CC
Confidence 64
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=4.7e-05 Score=74.97 Aligned_cols=145 Identities=7% Similarity=-0.012 Sum_probs=104.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++++| ++++.++...++.|.+||.. +.... +....+...+.++++++ ++..+++...++.|..||...
T Consensus 17 ~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g----- 87 (299)
T 2z2n_A 17 PYGITVSD-KGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKKG----- 87 (299)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTS-----
T ss_pred ccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCCC-----
Confidence 78899999 88888777778999999988 65443 33223456799999997 556777766688999998763
Q ss_pred ccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
. ...+. ....+.++++.+++.++++...++.|..||. +++........+...++.+++.|++. ++++.
T Consensus 88 -----~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~ 158 (299)
T 2z2n_A 88 -----I--IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTE 158 (299)
T ss_dssp -----C--EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEE
T ss_pred -----c--EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEe
Confidence 1 12222 2345899999999998888888899999999 55543322213456789999999986 56666
Q ss_pred eCCCeE
Q 035500 597 HLTTMS 602 (606)
Q Consensus 597 S~DgtI 602 (606)
..++.|
T Consensus 159 ~~~~~i 164 (299)
T 2z2n_A 159 NQNNAI 164 (299)
T ss_dssp TTTTEE
T ss_pred CCCCEE
Confidence 555544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-05 Score=80.85 Aligned_cols=155 Identities=15% Similarity=0.052 Sum_probs=104.4
Q ss_pred eceeEEEEcCCCCCEEEEEeCC---------CcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeE
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLD---------GEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCV 507 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~D---------GtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtI 507 (606)
.++..++++| ++++.++...+ +.-.||.+.. ++..... .+.....+++|+|++..++++.+.++.|
T Consensus 98 ~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~---~~~~~pngi~~spdg~~lyv~~~~~~~i 173 (297)
T 3g4e_A 98 NRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF---DQVDISNGLDWSLDHKIFYYIDSLSYSV 173 (297)
T ss_dssp EEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE---EEESBEEEEEECTTSCEEEEEEGGGTEE
T ss_pred CCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe---eccccccceEEcCCCCEEEEecCCCCcE
Confidence 3478899999 88877755322 2334555432 3333222 2334568999999543355677778999
Q ss_pred EEEeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
..||+...... +........+.. ......+++.++|++.++....+.|..||..+++.+..+. .+...+++++|.
T Consensus 174 ~~~~~d~~~G~---~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~ 249 (297)
T 3g4e_A 174 DAFDYDLQTGQ---ISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK-LPVDKTTSCCFG 249 (297)
T ss_dssp EEEEECTTTCC---EEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE-CSSSBEEEEEEE
T ss_pred EEEeccCCCCc---ccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE-CCCCCceEEEEe
Confidence 99998521100 000111222222 2347889999999988888888999999999999988888 466789999998
Q ss_pred -CCCCeEEEEEeCCC
Q 035500 587 -HHSPLCLLLLHLTT 600 (606)
Q Consensus 587 -P~g~~LLaTgS~Dg 600 (606)
|++..+++|+..++
T Consensus 250 g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 250 GKNYSEMYVTCARDG 264 (297)
T ss_dssp SGGGCEEEEEEBCTT
T ss_pred CCCCCEEEEEcCCcC
Confidence 89898888887664
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=95.25 Aligned_cols=99 Identities=24% Similarity=0.328 Sum_probs=77.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+..- ..+. .=.+=+.|+|++|++..+..++.+++|++|.|. .|.++.++ -|..+|+|+.|.+
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~--~l~~l~~L~~L~l 250 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLA-KLTNLESLIATNNQISDITPLGILTNLDELSLN-GNQLKDIG--TLASLTNLTDLDL 250 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGG-GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECC-SSCCCCCG--GGGGCTTCSEEEC
T ss_pred CCCCEEECcCCcCCCC--hhhc-cCCCCCEEEecCCcccccccccccCCCCEEECC-CCCcccch--hhhcCCCCCEEEC
Confidence 5799999998766532 2221 223456799999999888888889999999999 78888885 3888999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+ .++..+++|++|.+..|
T Consensus 251 ~~n~l~~~----~~~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 251 ANNQISNL----APLSGLTKLTELKLGAN 275 (466)
T ss_dssp CSSCCCCC----GGGTTCTTCSEEECCSS
T ss_pred CCCccccc----hhhhcCCCCCEEECCCC
Confidence 99988776 55888899998887654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-05 Score=90.61 Aligned_cols=148 Identities=9% Similarity=-0.029 Sum_probs=99.2
Q ss_pred eEEEEcCCCCCEEEEEeCCCc-------------EEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC
Q 035500 441 RQFEYNPSNPSLMAFGTLDGE-------------VIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG 505 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGt-------------VrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg 505 (606)
..++|+| |++.|+.++.|+. |++|++.++.. ...+...+|...+.++.|+|+ +.+++.++.++
T Consensus 171 ~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~ 248 (695)
T 2bkl_A 171 ATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRD-GKYLFVYILRG 248 (695)
T ss_dssp CCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTT-SCCEEEEEEET
T ss_pred cceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCC-CCEEEEEEeCC
Confidence 4678999 9999999998876 99999998763 233444456678999999994 56666666554
Q ss_pred ----eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe---CCCcEEEEECCCCce---eEEEcCC
Q 035500 506 ----CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG---YSKNVALYDINTEKP---LQLFTDM 575 (606)
Q Consensus 506 ----tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs---~Dg~I~IWDlrt~k~---v~~l~~g 575 (606)
.|.+||...+ .......+...+....| ++|.+++++. .++.|.+||+.+++. ...+. .
T Consensus 249 ~~~~~l~~~~~~~~----------~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~ 316 (695)
T 2bkl_A 249 WSENDVYWKRPGEK----------DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP-E 316 (695)
T ss_dssp TTEEEEEEECTTCS----------SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC-C
T ss_pred CCceEEEEEcCCCC----------ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec-C
Confidence 5555544331 12222234445566666 4555555544 258899999988754 33343 2
Q ss_pred C-CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 576 H-REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 576 H-~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+ ...+..++|+ +..++++...|+..+.
T Consensus 317 ~~~~~l~~~~~~--~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 317 DSSASLLSVSIV--GGHLSLEYLKDATSEV 344 (695)
T ss_dssp CSSCEEEEEEEE--TTEEEEEEEETTEEEE
T ss_pred CCCCeEEEEEEE--CCEEEEEEEECCEEEE
Confidence 3 4568888888 4568899999988765
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.4e-07 Score=91.17 Aligned_cols=104 Identities=12% Similarity=0.125 Sum_probs=76.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccc-hhccc--cccccccccEEecccCCCcccccccccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATN-IRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
.+|+.++|+++.+..-. ...+..=-.=+.|+|+.|+ +..+. .++.+++|++|.|.+||.|+.++.+.|..+|+|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 36888888886554211 0111122245779999997 88887 57788999999999559999999999999999999
Q ss_pred EEcccccccchhhhhHHhhcCCchh---hhhhcee
Q 035500 177 LSMCETRIVNLWTTTAAISKLPYLM---ELRFQMC 208 (606)
Q Consensus 177 l~~~~~~~~~l~~~~~~l~~~~~l~---~l~~~~~ 208 (606)
|.|.+|++..+ .++..+++|+ +|.+..+
T Consensus 110 L~l~~n~l~~l----p~~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 110 LGIFNTGLKMF----PDLTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEEECCCSC----CCCTTCCBCCSEEEEEEESC
T ss_pred EeCCCCCCccc----cccccccccccccEEECCCC
Confidence 99999988876 3466677776 7776554
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.4e-06 Score=95.06 Aligned_cols=144 Identities=12% Similarity=0.074 Sum_probs=97.4
Q ss_pred eeEEEEcCCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe--------
Q 035500 440 PRQFEYNPSNPSLMAFGTLD-----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC-------- 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D-----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt-------- 506 (606)
+..++||| ||++||.++.+ .+|++||+.+|+.+.. . .+...+.+++|+| + ..|+.++.|+.
T Consensus 165 ~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~--~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 165 LDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E--LKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E--EEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred EEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c--CCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence 67889999 99999987754 4699999999987653 1 1111235789999 4 77777776654
Q ss_pred ------EEEEeCCCCCCCcccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCC--ceeE
Q 035500 507 ------VRLFDLNHIPPKVADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYS-----KNVALYDINTE--KPLQ 570 (606)
Q Consensus 507 ------IklWDl~~~~~~~~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~D-----g~I~IWDlrt~--k~v~ 570 (606)
|++|++.+... .....+... ..+.++.|+|+|++++.++.+ ..|.+||+.++ +...
T Consensus 239 ~~~~~~v~~~~lgt~~~--------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQS--------ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp CCCCCEEEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred CCCCCEEEEEECCCCch--------hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 88999876321 122334332 248899999999988777654 38999999887 4145
Q ss_pred EEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 571 LFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 571 ~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.+. .+...+.... +|+|..+++.+..+
T Consensus 311 ~l~-~~~~~~~~~~-~~dg~~l~~~s~~~ 337 (741)
T 1yr2_A 311 ALI-PDLKAQWDFV-DGVGDQLWFVSGDG 337 (741)
T ss_dssp EEE-CSSSSCEEEE-EEETTEEEEEECTT
T ss_pred Eec-CCCCceEEEE-eccCCEEEEEECCC
Confidence 555 3445555543 48888766665443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.8e-07 Score=87.44 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=76.1
Q ss_pred eEEEccCccccchHHHhhccCCCceeEEEccccchhccc---cccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 103 RVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN---MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
+.|+++++.++. .=..+ +..-+.|+|++|+|..+. .++.+++|++|+|. .|.|+.+..+.|..+++|+.|.|
T Consensus 14 ~~l~~s~n~l~~-iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCccc-CccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECC-CCcCCEECHHHhCCCCCCCEEEC
Confidence 478888866543 11112 122378999999999883 37889999999999 88999999989999999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+- -.++..|++|++|.+..
T Consensus 89 s~N~l~~~~--~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 89 TSNRLENVQ--HKMFKGLESLKTLMLRS 114 (220)
T ss_dssp CSSCCCCCC--GGGGTTCSSCCEEECTT
T ss_pred CCCccCccC--HhHhcCCcCCCEEECCC
Confidence 999998762 23478899999888655
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-05 Score=87.97 Aligned_cols=142 Identities=17% Similarity=0.120 Sum_probs=107.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
...++++...+++|.+||..+++.+..+.. + ..+.++.|+| +++++++++.|+.|.+||+.... ...+
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g--~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t--------~~~v 233 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT-G--YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKE--------PTTV 233 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEEC-S--SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSS--------CCEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeC-C--CCccceEECC-CCCEEEEEcCCCeEEEEECCCCC--------CcEe
Confidence 344677778899999999999999887753 2 3578999999 67889999999999999996110 2345
Q ss_pred EEeecCCCeEEEEEc----cCCCEEEEEeC-CCcEEEEECCCCceeEEEcCC---------CCC-CeEEEEEeCCCCeEE
Q 035500 529 ATYYDFEQLTSVHVN----STDDQFLASGY-SKNVALYDINTEKPLQLFTDM---------HRE-PINVAKFSHHSPLCL 593 (606)
Q Consensus 529 ~t~~~~~~V~sV~~s----p~g~~LaSgs~-Dg~I~IWDlrt~k~v~~l~~g---------H~~-~I~sV~fsP~g~~LL 593 (606)
..+........++|+ |+|++++++.. ++++.++|..+.+++..+..+ |.. .+..+..+++++..+
T Consensus 234 ~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 234 AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred EEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 555554456899999 69988777765 599999999999988776621 222 678888899888766
Q ss_pred EEEeCCCeE
Q 035500 594 LLLHLTTMS 602 (606)
Q Consensus 594 aTgS~DgtI 602 (606)
++...++.|
T Consensus 314 v~~~~~g~v 322 (567)
T 1qks_A 314 VNVKETGKI 322 (567)
T ss_dssp EEETTTTEE
T ss_pred EEecCCCeE
Confidence 666666655
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-06 Score=98.69 Aligned_cols=130 Identities=16% Similarity=0.207 Sum_probs=88.9
Q ss_pred hcCcCccceeeeccCCCcccchhHHHHHHHHhhccceEEEccCccccch---HHHhhccCCCceeEEEccccchhccc--
Q 035500 67 EMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRND---NLLDLCQVGSSCHVLILRATNIRKLN-- 141 (606)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~-- 141 (606)
.++-+.+..+|+.+..-..+..... .. -.+||+++|+++.+..- .+..+ ..=+.|+|++|.|..+.
T Consensus 47 ~l~l~~l~~l~l~~~~l~~lp~~~~----~~-l~~L~~L~L~~n~l~~~~~~~~~~l----~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMRKLPAALL----DS-FRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp SGGGCCCSEEEESSCEESEECTHHH----HH-CCCCSEEECTTSCCCEECTTTTTTC----TTCCEEECCSSCCCCCCTT
T ss_pred cccCCCceEEEeeCCCCCCcCHHHH----cc-CCCCcEEECCCCCCCCCChHHhcCC----CCCCEEECCCCcCCCCCHH
Confidence 3444566667765443333333221 11 15789999998765432 22221 23467999999888876
Q ss_pred cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 142 MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 142 ~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.++.+++|.+|+|. .|.|+.++...|..+|+|+.|.|.+|++..+.. .++.++++|++|.+..+
T Consensus 118 ~~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 118 VFQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSN 181 (597)
T ss_dssp TTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECTTS
T ss_pred HHcCCCCCCEEEee-CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh--hhhhcCCcCcEEECcCC
Confidence 46788899999999 788999988888899999999999988876522 35777888888887654
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.28 E-value=6.4e-07 Score=87.63 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=38.3
Q ss_pred eeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 127 CHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
-+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.+..+.|..+|+|+.|.|.+|+|..+- -..+..+++|++|.
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLYGNKITELP--KSLFEGLFSLQLLL 110 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECC-SSCCCEECTTTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECC-CCcCCCcCHHHhhCCcCCCEEECCCCcCCccC--HhHccCCCCCCEEE
Confidence 344555555555544 34455555555555 55555555555555555555555555555331 11234455555554
Q ss_pred hc
Q 035500 205 FQ 206 (606)
Q Consensus 205 ~~ 206 (606)
+.
T Consensus 111 L~ 112 (220)
T 2v9t_B 111 LN 112 (220)
T ss_dssp CC
T ss_pred CC
Confidence 33
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=9.1e-07 Score=92.93 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=59.0
Q ss_pred cceEEEccCccccchHHHhhcc-CCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 101 KLRVVDLSNITLRNDNLLDLCQ-VGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.++.++|++|.+..-.- +.+. .=..=+.|+|++|+|..+. .++.+++|++|+|. .|.|+.+..+.|..|++|+.|
T Consensus 40 ~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS-SNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC-CCcCCcCCHHHhCCCcCCCEE
Confidence 46666776655432111 1111 1123355777777766665 35666667777777 566777666666777777777
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|+|..+ .-.++..|++|++|.+..
T Consensus 118 ~L~~N~i~~~--~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 118 LLYNNHIVVV--DRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp ECCSSCCCEE--CTTTTTTCTTCCEEECCS
T ss_pred ECCCCcccEE--CHHHhCCcccCCEEECCC
Confidence 7777766654 123455566666665443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-05 Score=79.40 Aligned_cols=143 Identities=10% Similarity=0.038 Sum_probs=105.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWDl~~~~~~ 518 (606)
+.+++++| ++++++ +.++.|..||. +|+.+..+.. ++...+.++.+.+ ++..+++.+. ++.|..+|...
T Consensus 39 ~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~-~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~G---- 108 (276)
T 3no2_A 39 CNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAA-PAGCEMQTARILP-DGNALVAWCGHPSTILEVNMKG---- 108 (276)
T ss_dssp CCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEEC-CTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTTS----
T ss_pred CcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcC-CCCccccccEECC-CCCEEEEecCCCCEEEEEeCCC----
Confidence 56788999 899888 45788999999 7998887764 2234688889988 6788888887 77777777533
Q ss_pred cccccCCcceEEee-------cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 519 VADARGNSSVATYY-------DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-------~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
+.+..+. .+.....++..++|+++++.+.++.|..||.. |+.+..+.. .....++.+.+++.
T Consensus 109 -------k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~--~~~~~~~~~~~~g~- 177 (276)
T 3no2_A 109 -------EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL--SGTPFSSAFLDNGD- 177 (276)
T ss_dssp -------CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC--SSCCCEEEECTTSC-
T ss_pred -------CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC--CCCccceeEcCCCC-
Confidence 1222222 12235566788999999999999999999998 999988883 24566788888887
Q ss_pred EEEEEeCCCeEE
Q 035500 592 CLLLLHLTTMSR 603 (606)
Q Consensus 592 LLaTgS~DgtIR 603 (606)
++++++.++.|.
T Consensus 178 ~~v~~~~~~~v~ 189 (276)
T 3no2_A 178 CLVACGDAHCFV 189 (276)
T ss_dssp EEEECBTTSEEE
T ss_pred EEEEeCCCCeEE
Confidence 466666666554
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=5e-05 Score=85.06 Aligned_cols=149 Identities=8% Similarity=-0.040 Sum_probs=107.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC--CCceEEEEeccCCCCCEEEEEEe----eCCCCEEEEE-ECCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE--NGNVACYIPSIGGTNSVLGLCWL----KKYPSKLVAG-SDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~--tg~~v~~~~~~gH~~~V~~L~fs----p~~~~~LaSg-S~DgtIklWDl 512 (606)
+..+.|+| +++++++++.||.|.+||+. +++.+..+.. + .....++|+ | ++++++.+ -.+++|.++|.
T Consensus 199 p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G--~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~ 273 (567)
T 1qks_A 199 VHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-G--SEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDG 273 (567)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-C--SEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEET
T ss_pred ccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-C--CCCceeEEccccCC-CCCEEEEEEccCCeEEEEEC
Confidence 55788999 99999999999999999995 7777776653 2 236799999 5 55666555 45699999998
Q ss_pred CCCCCCcccccCCcceEEeec------------CCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 035500 513 NHIPPKVADARGNSSVATYYD------------FEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLFTDMHREP 579 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~------------~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~ 579 (606)
.+. .++.++.. ...+..+..++++. ++++...+|.|.++|....+............
T Consensus 274 ~t~----------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~ 343 (567)
T 1qks_A 274 ETL----------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 343 (567)
T ss_dssp TTC----------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred CCC----------cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccc
Confidence 773 23333321 12478888888875 55555667999999998764332222123456
Q ss_pred eEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 580 INVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
...+.|+|+++++++++..+..|.
T Consensus 344 ~~d~~~~pdgr~~~va~~~sn~V~ 367 (567)
T 1qks_A 344 LHDGGLDGSHRYFITAANARNKLV 367 (567)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEE
T ss_pred ccCceECCCCCEEEEEeCCCCeEE
Confidence 778999999999888887666654
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-06 Score=97.28 Aligned_cols=102 Identities=19% Similarity=0.265 Sum_probs=80.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+..-.- ..+..=..=+.|+|++|.|..+.. ++.+++|++|+|. .|.|+.+..+.|..||+|+.|
T Consensus 99 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCCCCH-HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee-CCcCCCCChhhhhcCCcCcEE
Confidence 589999999987654211 111112245789999999998874 6889999999999 889999999999999999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++..+ .+..+|+|+.|.+..+
T Consensus 177 ~L~~N~l~~~-----~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 177 QLSSNRLTHV-----DLSLIPSLFHANVSYN 202 (597)
T ss_dssp ECTTSCCSBC-----CGGGCTTCSEEECCSS
T ss_pred ECcCCCCCCc-----ChhhhhhhhhhhcccC
Confidence 9999999876 4677888888776543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-06 Score=87.52 Aligned_cols=103 Identities=22% Similarity=0.306 Sum_probs=82.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+||+++|+++.+.. +..+. .=..=+.|+|++|+|..+.. ++.+++|++|.|. .|.|+.+....|..||+|+.|
T Consensus 63 ~~L~~L~l~~n~l~~--~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD--ISALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV-ENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp TTCCEEECTTSCCCC--CGGGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEECCCCCCCC--chhhc-CCCCCCEEECCCCccCccChhHhcCCcCCCEEECC-CCcCCccCHHHhccCCCCCEE
Confidence 579999999987654 22222 11245779999999998875 7889999999999 889999999999999999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++..+- -..+.++++|++|.+..|
T Consensus 139 ~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 139 NLAHNQLQSLP--KGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCccC--HHHhccCccCCEEECCCC
Confidence 99999988652 133678999999987764
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.25 E-value=3e-06 Score=87.45 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=56.5
Q ss_pred ccceEEEccCccccch---HHHhhccCCCceeEEEccccchhcc--ccccccccccEEecccCCCcccccccccccCccc
Q 035500 100 QKLRVVDLSNITLRND---NLLDLCQVGSSCHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYL 174 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l 174 (606)
.+|++++|+++.+..- .+..+ ..=+.|+|++|+|..+ ..++.+++|++|+|. .|.|+.++...| ++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~---~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGL----QHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS-KNHLVEIPPNLP---SSL 125 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTC----TTCCEEECCSSCCCEECGGGSTTCTTCCEEECC-SSCCCSCCSSCC---TTC
T ss_pred CCCeEEECCCCcCCccCHhHhhCC----CCCcEEECCCCccCccCHhHhhCcCCCCEEECC-CCcCCccCcccc---ccC
Confidence 4566667666554321 22222 2345577777766666 345666677777776 666666665544 666
Q ss_pred cEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 175 MCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 175 ~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+.|.+.+|++..+. ..++.++++|++|.+..
T Consensus 126 ~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 126 VELRIHDNRIRKVP--KGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CEEECCSSCCCCCC--SGGGSSCSSCCEEECCS
T ss_pred CEEECCCCccCccC--HhHhCCCccCCEEECCC
Confidence 77777666666542 12355666666666544
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=8.2e-07 Score=85.21 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=82.0
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..|+.++|+++.+.. +.+-+..=-.=+.|+|++|.|..+.. ++.+.+|++|.|+ .|+|+.+..+.|..||+|+.|
T Consensus 31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS-YNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC-CCccCEeCHHHhCCCCCCCEE
Confidence 478999999987652 22222222345789999999999874 7899999999999 899999999999999999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|+|..+-. .++..|++|+.|.++.
T Consensus 108 ~L~~N~l~~~~~--~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 108 SLHGNDISVVPE--GAFNDLSALSHLAIGA 135 (193)
T ss_dssp ECCSSCCCBCCT--TTTTTCTTCCEEECCS
T ss_pred ECCCCCCCeeCh--hhhhcCccccEEEeCC
Confidence 999999986621 3477889999988764
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-06 Score=91.27 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=23.3
Q ss_pred eEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEccc
Q 035500 128 HVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCE 181 (606)
Q Consensus 128 ~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~ 181 (606)
+.|+|++|.|..+. .++.+.+|++|+|. .|.++.+++. |..||+|+.|.|.+
T Consensus 107 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls-~n~l~~lp~~-l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 107 QHMTIDAAGLMELPDTMQQFAGLETLTLA-RNPLRALPAS-IASLNRLRELSIRA 159 (328)
T ss_dssp SEEEEESSCCCCCCSCGGGGTTCSEEEEE-SCCCCCCCGG-GGGCTTCCEEEEEE
T ss_pred CEEECCCCCccchhHHHhccCCCCEEECC-CCccccCcHH-HhcCcCCCEEECCC
Confidence 33444444444443 23444444444444 4444444332 44444444444444
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-06 Score=82.32 Aligned_cols=61 Identities=18% Similarity=0.350 Sum_probs=40.6
Q ss_pred ceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccch
Q 035500 126 SCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNL 187 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l 187 (606)
.=+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.++.+.|..||+|+.|.|.+|+|..+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFN-SNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECC-CCCCCccChhHhCCcchhhEEECCCCcccee
Confidence 3456777777776663 35666777777777 6667777666666777777777777766654
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.1e-07 Score=92.68 Aligned_cols=77 Identities=27% Similarity=0.329 Sum_probs=41.5
Q ss_pred eEEEccccchhccc-cccccccccEEecccCCCcccccccc--------cccCccccEEEcccccccchhhhhHHhhcCC
Q 035500 128 HVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDC--------FSCMPYLMCLSMCETRIVNLWTTTAAISKLP 198 (606)
Q Consensus 128 ~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~--------~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~ 198 (606)
+.|+|++|+|..+. .++.+++|++|.|.+|+.++.++... |..||+|+.|.|.+|++..+. +.+.+++
T Consensus 130 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---~~l~~l~ 206 (328)
T 4fcg_A 130 ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP---ASIANLQ 206 (328)
T ss_dssp SEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC---GGGGGCT
T ss_pred CEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch---HhhcCCC
Confidence 45666666665554 34455566666666555555555432 334666666666666555332 2355555
Q ss_pred chhhhhhce
Q 035500 199 YLMELRFQM 207 (606)
Q Consensus 199 ~l~~l~~~~ 207 (606)
+|++|.+..
T Consensus 207 ~L~~L~L~~ 215 (328)
T 4fcg_A 207 NLKSLKIRN 215 (328)
T ss_dssp TCCEEEEES
T ss_pred CCCEEEccC
Confidence 566555444
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-06 Score=85.77 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=69.9
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+..-.- +.+..=..=+.|+|++|+|..+. .++.+++|++|+|. +|.|+.+..+.|..+|+|+.|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG-TNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC-CCcCCccChhHhCcchhhCeE
Confidence 677888888766543211 11111124567888888887775 35677888888888 778888887778888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|++..+- .++.++++|+.|.+..
T Consensus 118 ~Ls~N~l~~lp---~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 118 FMCCNKLTELP---RGIERLTHLTHLALDQ 144 (229)
T ss_dssp ECCSSCCCSCC---TTGGGCTTCSEEECCS
T ss_pred eccCCcccccC---cccccCCCCCEEECCC
Confidence 88888877552 3456677777776544
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-06 Score=88.79 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=64.4
Q ss_pred ccceEEEccCccccc-----hHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccc-cccccCc
Q 035500 100 QKLRVVDLSNITLRN-----DNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHE-DCFSCMP 172 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p 172 (606)
.+|+.++|+++.+.. ..+.. -..-+.|+|++|.+..+. .++.+.+|++|.|. .|.|+.+.. ..|..||
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~----~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFG----TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ-HSNLKQMSEFSVFLSLR 126 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHS----CSCCCEEECCSCSEEEEEEEEETCTTCCEEECT-TSEEESSTTTTTTTTCT
T ss_pred ccCCEEECCCCccCcccCccccccc----ccccCEEECCCCccccChhhcCCCCCCCEEECC-CCcccccccchhhhhcc
Confidence 467777777765542 11111 234456777777777665 35667777777777 677777765 5677777
Q ss_pred cccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 173 YLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 173 ~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
+|+.|.+.+|++.... ..++.++++|++|.+..+
T Consensus 127 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 127 NLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp TCCEEECTTSCCEECS--TTTTTTCTTCCEEECTTC
T ss_pred CCCEEECCCCcCCccc--hhhcccCcCCCEEECCCC
Confidence 7777777777765431 234566777777765553
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-06 Score=89.15 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=80.6
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc----cccccccccEEecccCCCcccccccccccCccc
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN----MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYL 174 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l 174 (606)
..+|+.++|+++.+.. .-.+.+..=-.=+.|+|++|+|..++ .+..+.+|++|.|. .|.|+.++.. |..+|+|
T Consensus 27 ~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls-~n~i~~l~~~-~~~l~~L 103 (306)
T 2z66_A 27 PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSN-FLGLEQL 103 (306)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC-SCSEEEEEEE-EETCTTC
T ss_pred CCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC-CCccccChhh-cCCCCCC
Confidence 3579999999976652 11222223335678999999998763 34468999999999 8899999876 8899999
Q ss_pred cEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 175 MCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 175 ~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
+.|.+.+|++..+.. ..++.++++|++|.+..|
T Consensus 104 ~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 104 EHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp CEEECTTSEEESSTT-TTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCccccccc-chhhhhccCCCEEECCCC
Confidence 999999999987632 346788999999987664
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-06 Score=89.20 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=81.2
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc-ccccccccEEecccCCCcccccccccccCccccEEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM-VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
.+|+.++|+++.+..- ... ..-.+=+.|+|++|+|..+.. ++.+++|++|.|. .|.|+.++.+.|..|++|+.|.
T Consensus 55 ~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKL--QVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp TTCCEEECTTSCCCEE--ECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC-SSCCCCCCSSTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCcc--cCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC-CCcCcccCHHHHcCCCCCCEEE
Confidence 6899999999776531 111 222345789999999998874 5688999999999 8999999999999999999999
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhce
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
|.+|++..+- ..++.++++|++|.+..
T Consensus 131 L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 131 LKGNELKTLP--PGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CTTSCCCCCC--TTTTTTCTTCCEEECTT
T ss_pred CCCCCCCccC--hhhcccccCCCEEECCC
Confidence 9999998762 23467889999988655
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-06 Score=88.46 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=75.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccc-hhcc--ccccccccccEEecccCCCcccccccccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATN-IRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
.+|+.++|+++.+..-.-..+ ..=..=+.|+|++|. +..+ ..++.+++|++|+|. .|.|+.+....|..+|+|+.
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccceeCHhhc-CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC-CCcCCEECHhHhhCCcCCCE
Confidence 578899998876543211111 111235678998887 7777 356788899999998 88888888888888999999
Q ss_pred EEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 177 LSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 177 l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|.|.+|++..+- ..++.++++|++|.+..+
T Consensus 134 L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 134 LYLQDNALQALP--DDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EECCSSCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred EECCCCcccccC--HhHhccCCCccEEECCCC
Confidence 999998887652 134677888888886653
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.3e-05 Score=81.73 Aligned_cols=150 Identities=11% Similarity=0.000 Sum_probs=103.4
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC--eEEEEeCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG--CVRLFDLNHIP 516 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg--tIklWDl~~~~ 516 (606)
.+..++|+| +++++++...++.|++||..++....... ... ... ++|+| ++..++++..++ .|.+||.....
T Consensus 132 ~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~--~~~-~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 132 YMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHP--GFK-GGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEE--TCC-BCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeec--cCC-CCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCc
Confidence 377899999 88888888888999999999877765443 222 233 89998 557788887766 78888876531
Q ss_pred CCcccccCCcceEEe----e-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEE---cCCCCCCe--EEEEEe
Q 035500 517 PKVADARGNSSVATY----Y-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLF---TDMHREPI--NVAKFS 586 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~----~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l---~~gH~~~I--~sV~fs 586 (606)
....+ . ....+.+++++|++..++.+..++.|..||..++...... ..++...- +.++|+
T Consensus 206 ----------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 206 ----------APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYY 275 (409)
T ss_dssp ----------CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEE
T ss_pred ----------eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEe
Confidence 12222 1 2344788999996555555777889999999877643220 21222222 389999
Q ss_pred CCCCeEEEEEeCCCeEEE
Q 035500 587 HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIRc 604 (606)
|++..++++.+.++.|+.
T Consensus 276 p~~g~lyv~d~~~~~I~~ 293 (409)
T 3hrp_A 276 FVDSNFYMSDQNLSSVYK 293 (409)
T ss_dssp TTTTEEEEEETTTTEEEE
T ss_pred CCCCEEEEEeCCCCEEEE
Confidence 987778888887777653
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=9e-07 Score=86.56 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=78.6
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccE
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
...++.++|++|.+..-.-.+.+..=..=+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+..+.|..||+|+.
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-SNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCGGGGTTCSSCCE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC-CCccCccCHhHhcCCcCCCE
Confidence 34567888888766532111112222345789999999998874 7889999999999 89999999989999999999
Q ss_pred EEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 177 LSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 177 l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
|.|.+|++..+- -.++..+++|++|.++.
T Consensus 110 L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 110 LMLRSNRITCVG--NDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp EECTTSCCCCBC--TTSSTTCTTCSEEECTT
T ss_pred EECCCCcCCeEC--HhHcCCCccCCEEECCC
Confidence 999999988662 24466777788777544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00017 Score=70.95 Aligned_cols=147 Identities=3% Similarity=-0.091 Sum_probs=104.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++++| ++.+.++...++.|..||.. ++. ..+....+...+.++++.+ ++.++++...++.|..||... .
T Consensus 59 ~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g-~--- 130 (299)
T 2z2n_A 59 VMCLTISS-DGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDDG-K--- 130 (299)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTC-C---
T ss_pred eeeEEECC-CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECCCC-C---
Confidence 77899999 88888887778999999986 443 2233223456789999997 557777777788999999832 1
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE-EcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQL-FTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~-l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
....... ....+.++++.+++.++++...++.|..||. +++.... .. .+...+..+++++++. ++++..
T Consensus 131 ------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~-~~~~~~~~i~~~~~g~-l~v~~~ 201 (299)
T 2z2n_A 131 ------IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIP-TPASGPVGITKGNDDA-LWFVEI 201 (299)
T ss_dssp ------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS-STTCCEEEEEECTTSS-EEEEET
T ss_pred ------EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCC-CCCCcceeEEECCCCC-EEEEcc
Confidence 1111111 2345899999999998888877899999999 6665433 23 3456788999999987 566665
Q ss_pred CCCeEE
Q 035500 598 LTTMSR 603 (606)
Q Consensus 598 ~DgtIR 603 (606)
.++.|.
T Consensus 202 ~~~~i~ 207 (299)
T 2z2n_A 202 IGNKIG 207 (299)
T ss_dssp TTTEEE
T ss_pred CCceEE
Confidence 555443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.19 E-value=9e-07 Score=84.60 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=67.3
Q ss_pred eEEEccCccccchHHHhhccCCCceeEEEccccchhcccc---ccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 103 RVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM---VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
+.|+++++.++. .=.++.. .-+.|+|++|+|..+.. ++.+.+|++|+|+ .|.|+.+..+.|..||+|+.|.|
T Consensus 11 ~~l~~s~~~l~~-ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSS-CCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCc-CccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECC-CCCCCCcCHhHcCCcccCCEEEC
Confidence 567777765532 1112222 55778888888887763 6788888888888 78888887777888888888888
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+-. .++..+++|++|.++.
T Consensus 86 s~N~l~~~~~--~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 86 GENKIKEISN--KMFLGLHQLKTLNLYD 111 (192)
T ss_dssp CSCCCCEECS--SSSTTCTTCCEEECCS
T ss_pred CCCcCCccCH--HHhcCCCCCCEEECCC
Confidence 8888876521 2355666666666433
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-06 Score=93.63 Aligned_cols=78 Identities=23% Similarity=0.278 Sum_probs=45.3
Q ss_pred eeEEEccccchhcc--ccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 127 CHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 127 ~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
=+.|+|+.|+|..+ ..++.+.+|++|+|. .|.|+.+....|..+|+|+.|.|.+|++..+. ..++.++++|++|.
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVG-DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP--TEALSHLHGLIVLR 182 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEEC-CTTCCEECTTSSTTCTTCCEEEEESCCCSSCC--HHHHTTCTTCCEEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECC-CCccceeChhhccCCCCCCEEECCCCcCcccC--hhHhcccCCCcEEe
Confidence 34566666666555 234556666666666 55666666556666666666666666665442 23455666666665
Q ss_pred hce
Q 035500 205 FQM 207 (606)
Q Consensus 205 ~~~ 207 (606)
+..
T Consensus 183 l~~ 185 (477)
T 2id5_A 183 LRH 185 (477)
T ss_dssp EES
T ss_pred CCC
Confidence 554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-06 Score=85.30 Aligned_cols=104 Identities=18% Similarity=0.147 Sum_probs=79.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcc--ccccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..|+.++|+++.+..-.- +.+..=..=+.|+|++|+|..+ +.++.+.+|++|+|. .|.|+.++...|..||+|+.|
T Consensus 32 ~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY-GNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC-CCcCCccCHhHccCCCCCCEE
Confidence 578999999976543110 1111112457899999999998 578899999999999 899999999999999999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|+|..+- ..++..+++|++|.+.+
T Consensus 110 ~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 110 LLNANKINCLR--VDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCS
T ss_pred ECCCCCCCEeC--HHHcCCCCCCCEEECCC
Confidence 99999988662 23566777777776433
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-06 Score=94.76 Aligned_cols=95 Identities=19% Similarity=0.241 Sum_probs=62.5
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+||.++|+++.+..-.+..+ ..=+.|+|++|+|..+. ++.+++|++|.|. .|.|+.++ |..+|+|+.|.+
T Consensus 64 ~~L~~L~Ls~n~l~~~~~~~l----~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~-~N~l~~l~---~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLDLSQN----TNLTYLACDSNKLTNLD-VTPLTKLTYLNCD-TNKLTKLD---VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCCCCTTC----TTCSEEECCSSCCSCCC-CTTCTTCCEEECC-SSCCSCCC---CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeEccccC----CCCCEEECcCCCCceee-cCCCCcCCEEECC-CCcCCeec---CCCCCcCCEEEC
Confidence 467777777766544211111 23466777777777775 6677777777777 66777763 777777777777
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+ .+.++++|++|.+..|
T Consensus 135 ~~N~l~~l-----~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 135 ARNTLTEI-----DVSHNTQLTELDCHLN 158 (457)
T ss_dssp TTSCCSCC-----CCTTCTTCCEEECTTC
T ss_pred CCCcccee-----ccccCCcCCEEECCCC
Confidence 77777665 3666777777765554
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-06 Score=87.10 Aligned_cols=80 Identities=23% Similarity=0.254 Sum_probs=70.1
Q ss_pred ceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhh
Q 035500 126 SCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
+=+.|+|++|+|..+. .++.+++|++|+|. .|.|+.+..+.|..+|+|+.|.|.+|++..+ ...++.++++|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCCEE--CTTTTTTCTTCCEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECC-CCcCCccCHHHccCCcCCCEEECCCCccCcc--ChhhhcCCccccEE
Confidence 4578999999999987 67889999999999 7899999998999999999999999999876 22468889999999
Q ss_pred hhcee
Q 035500 204 RFQMC 208 (606)
Q Consensus 204 ~~~~~ 208 (606)
.+..+
T Consensus 106 ~l~~n 110 (276)
T 2z62_A 106 VAVET 110 (276)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 87654
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-06 Score=86.93 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=83.9
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+.. +..+.. ..=+.|+|++|+|..+..++.+.+|++|+|. .|.|+.++ .|..||+|+.|.|
T Consensus 85 ~~L~~L~L~~N~l~~--l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls-~N~i~~~~--~l~~l~~L~~L~L 157 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN--LNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIR-NNKLKSIV--MLGFLSKLEVLDL 157 (263)
T ss_dssp SSCCEEECCSSCCSC--CTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECT-TSCCCBCG--GGGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCC--cCcccc--CcccEEEccCCccCCChhhcCcccccEEECC-CCcCCCCh--HHccCCCCCEEEC
Confidence 678899998876654 333433 5567799999999999888899999999999 88899985 4888999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCC
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKD 213 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~ 213 (606)
.+|+|..+ .++.++++|+.|.+..+.+...
T Consensus 158 ~~N~i~~~----~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 158 HGNEITNT----GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSCCCBC----TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCcCcch----HHhccCCCCCEEeCCCCcccCC
Confidence 99999887 7888899999999888775443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-06 Score=91.24 Aligned_cols=171 Identities=18% Similarity=0.107 Sum_probs=113.6
Q ss_pred eEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--cc-ccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 103 RVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VG-RFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
++|+++++.+.. +=.++. -.-+.|+|++|+|..+.. ++ .+.+|++|+|. .|.|+.+..+-|..||+|+.|.|
T Consensus 21 ~~l~c~~~~l~~-iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCc-cCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECC-CCcCCccChhhccCCCCCCEEEC
Confidence 467777754332 101121 224789999999998863 44 88999999999 89999999889999999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhc
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLR 259 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (606)
.+|++..+- -.++..|++|++|.+..+. =+ .+ .-+
T Consensus 96 s~N~l~~~~--~~~~~~l~~L~~L~L~~N~---i~------------------------------------~~----~~~ 130 (361)
T 2xot_A 96 SSNHLHTLD--EFLFSDLQALEVLLLYNNH---IV------------------------------------VV----DRN 130 (361)
T ss_dssp CSSCCCEEC--TTTTTTCTTCCEEECCSSC---CC------------------------------------EE----CTT
T ss_pred CCCcCCcCC--HHHhCCCcCCCEEECCCCc---cc------------------------------------EE----CHH
Confidence 999988762 2347788999999866532 00 00 012
Q ss_pred ccchhhhhccCCCCCCCcceeccccc----C-CCCCCCCcccccc-ccc-----c---hhhhhhhccCCCCcccchhhH
Q 035500 260 TMNLMELSSCLSPNLNGHAEMLDEVN----D-SNEFPGGAHKQDL-MDA-----N---VKLKKYISHHPSPICFEKHYR 324 (606)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~-~l~-----~---v~L~~~l~~~~npi~~~~~YR 324 (606)
.|.-+..|..|++.+|++-.+...+- . +++..+-+..|.+ .+. . ..++ .+.+.+||+.+.-..+
T Consensus 131 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~-~l~l~~N~~~C~C~l~ 208 (361)
T 2xot_A 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN-GLYLHNNPLECDCKLY 208 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT-TEECCSSCEECCHHHH
T ss_pred HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc-eEEecCCCccCCcCcH
Confidence 23445677777888888777666542 2 4555555555554 221 1 1245 7888899998765433
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.6e-06 Score=93.37 Aligned_cols=56 Identities=13% Similarity=-0.045 Sum_probs=30.2
Q ss_pred hhhhhccCCCCCCCcceecccccC-CCCCCCCcccccc-ccc----c-hhhhhhhccCCCCccc
Q 035500 263 LMELSSCLSPNLNGHAEMLDEVND-SNEFPGGAHKQDL-MDA----N-VKLKKYISHHPSPICF 319 (606)
Q Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~----~-v~L~~~l~~~~npi~~ 319 (606)
.+..|..|++.+|++-.+.+.+.. +++..+-+.+|.+ .+. . -.|+ ++.+.+||+.+
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~-~L~l~~N~l~c 251 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE-HFDLRGNGFHC 251 (487)
T ss_dssp CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC-EEECTTCCBCH
T ss_pred cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCC-EEEcCCCCCcC
Confidence 455666777777776666555544 4444444444443 111 1 1344 56666666663
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.15 E-value=2.4e-06 Score=80.10 Aligned_cols=130 Identities=19% Similarity=0.242 Sum_probs=93.2
Q ss_pred CcCccceeeeccCCCcccchhHHHHHHHHhhccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--cccc
Q 035500 69 DSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRF 146 (606)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~ 146 (606)
+.+.+..+|+.+-.-..+.+ +...-.+|+.++|++|.+.. + +-...-..-+.|+|++|+|..+.. ++.+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~------~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN------LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC------GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred CcCCceEEEeeCCCCchhHH------hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 34556666664322222211 12223489999999987764 2 222233467899999999999863 5889
Q ss_pred ccccEEecccCCCcccccc-cccccCccccEEEcccccccchhhh-hHHhhcCCchhhhhhcee
Q 035500 147 MHLNTLSLDFCSSLASLHE-DCFSCMPYLMCLSMCETRIVNLWTT-TAAISKLPYLMELRFQMC 208 (606)
Q Consensus 147 ~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~l~~~~~~~~~l~~~-~~~l~~~~~l~~l~~~~~ 208 (606)
++|++|+|+ +|.|+.++. +.|..+|+|+.|++.+|.+..+-.. ...+..+|+|+.|.+..+
T Consensus 88 ~~L~~L~L~-~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 88 PDLTELILT-NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTCCEEECC-SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCEEECC-CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 999999999 889999986 5789999999999999999866322 224788999999986553
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.14 E-value=7.9e-05 Score=74.33 Aligned_cols=152 Identities=9% Similarity=0.017 Sum_probs=99.8
Q ss_pred eeEEEEcCCCCCEEEE-------EeCCCcEEEEECCCCceEEEEe--ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAF-------GTLDGEVIVINHENGNVACYIP--SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaS-------Gs~DGtVrIWDi~tg~~v~~~~--~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
+.+++|++ ++.++++ ++.++.|.+||..+++...... ..++...+.+++++++++. ++.++..+.|.+|
T Consensus 20 ~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~ 97 (314)
T 1pjx_A 20 AEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVV 97 (314)
T ss_dssp CEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEEE
T ss_pred ccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEEE
Confidence 66889998 8888888 6788999999988877643221 0124567999999984244 4444445578899
Q ss_pred eCCCCCCCcccccCCcceEEe--ecCCCeEEEEEccCCCEEEEEeCC---------------CcEEEEECCCCceeEEEc
Q 035500 511 DLNHIPPKVADARGNSSVATY--YDFEQLTSVHVNSTDDQFLASGYS---------------KNVALYDINTEKPLQLFT 573 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~--~~~~~V~sV~~sp~g~~LaSgs~D---------------g~I~IWDlrt~k~v~~l~ 573 (606)
|.. +... ... .... .....+.++++.++|+++++...+ +.|..||.. ++......
T Consensus 98 d~~-g~~~--~~~----~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 98 QTD-GTFE--EIA----KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp ETT-SCEE--ECC----SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred eCC-CCEE--EEE----eccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 987 3210 000 0000 012347899999999988877655 567777766 55433332
Q ss_pred CCCCCCeEEEEEe----CCCCeEEEEEeCCCeEE
Q 035500 574 DMHREPINVAKFS----HHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 574 ~gH~~~I~sV~fs----P~g~~LLaTgS~DgtIR 603 (606)
+....+.++|+ |++..++++.+.++.|.
T Consensus 170 --~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~ 201 (314)
T 1pjx_A 170 --AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLW 201 (314)
T ss_dssp --EESSEEEEEEEECTTSCEEEEEEEETTTTEEE
T ss_pred --CCCCcceEEEecccCCCCCEEEEEECCCCeEE
Confidence 34567889999 99987777777666554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.7e-06 Score=78.88 Aligned_cols=106 Identities=20% Similarity=0.175 Sum_probs=83.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhc-ccc-ccccccccEEecccCCCcccccc-cccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRK-LNM-VGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~-~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~ 176 (606)
.+|++++|+++.+..- .-...-..-+.|+|++|+|.. +.. ++.+++|++|+|. .|.|+.++. ..|..||+|+.
T Consensus 49 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 49 VNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS-GNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB-SSSCCSSGGGGGGSSCSCCCE
T ss_pred CCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc-CCccCcchhHHHHhcCCCCCE
Confidence 6799999999876643 333333456889999999998 553 3459999999999 789999864 67999999999
Q ss_pred EEcccccccchhhh-hHHhhcCCchhhhhhceec
Q 035500 177 LSMCETRIVNLWTT-TAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 177 l~~~~~~~~~l~~~-~~~l~~~~~l~~l~~~~~~ 209 (606)
|.+.+|++..+-.. ...+.++|+|++|.+..|.
T Consensus 125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 99999999876331 2468889999999977654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-06 Score=89.55 Aligned_cols=105 Identities=19% Similarity=0.188 Sum_probs=57.2
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccc-cccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~ 176 (606)
.+|+.++|+++.+..-.- +.+..=..=+.|+|++|.|..+.. ++.+.+|++|+|. .|.|+.++. ..|..+|+|+.
T Consensus 76 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEE-DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL-GNPYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT-TCCCSSSCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCccCccCH-hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC-CCCCcccCchhhhccCCCCcE
Confidence 456777776655442110 001111233556666666666553 4566666666666 566666665 56666666666
Q ss_pred EEccccc-ccchhhhhHHhhcCCchhhhhhcee
Q 035500 177 LSMCETR-IVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 177 l~~~~~~-~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|.+.+|+ +..+ ...++.++++|++|.+..+
T Consensus 154 L~l~~n~~~~~~--~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 154 LRVGNMDTFTKI--QRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EEEEESSSCCEE--CTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcccccc--CHHHccCCCCCCEEECCCC
Confidence 6666662 3322 1134555666666665543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.5e-06 Score=89.38 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=58.2
Q ss_pred ccceEEEccCccccchHHHhhccC----CCceeEEEccccchhcccc------cccc-ccccEEecccCCCccccccccc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQV----GSSCHVLILRATNIRKLNM------VGRF-MHLNTLSLDFCSSLASLHEDCF 168 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~------~~~~-~~l~tl~l~~~~~~~~~~~~~~ 168 (606)
.+|+.++|+++.++......+++. .-.=+.|+|++|.|..... +..+ .+|++|+|. .|.|+......|
T Consensus 51 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l 129 (362)
T 3goz_A 51 ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG-WNDFSSKSSSEF 129 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-SSCGGGSCHHHH
T ss_pred CceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc-CCcCCcHHHHHH
Confidence 467777777766665544444431 1333457777776665431 2233 567777777 666666644332
Q ss_pred ----ccC-ccccEEEcccccccchh--hhhHHhhcCC-chhhhhhcee
Q 035500 169 ----SCM-PYLMCLSMCETRIVNLW--TTTAAISKLP-YLMELRFQMC 208 (606)
Q Consensus 169 ----~~~-p~l~~l~~~~~~~~~l~--~~~~~l~~~~-~l~~l~~~~~ 208 (606)
..+ ++|+.|.|.+|++...- .-..++.+++ +|++|.+..|
T Consensus 130 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 222 36777777777666321 1123445555 6666665543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.9e-06 Score=85.50 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=37.2
Q ss_pred eEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.++.+.|..||+|+.|.|.+|++..+-. .++.++++|++|.+
T Consensus 110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l 186 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH--GAFDRLGKLQTITL 186 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEEC
T ss_pred CEEEcCCCcCCCcChhHhccCCcccEEECc-CCcCCccCHHHcCcCcCCCEEECCCCcCCccCH--HHHhCCCCCCEEEe
Confidence 445555555554442 3445555555555 445555554445555555555555555543311 23444555555544
Q ss_pred ce
Q 035500 206 QM 207 (606)
Q Consensus 206 ~~ 207 (606)
..
T Consensus 187 ~~ 188 (251)
T 3m19_A 187 FG 188 (251)
T ss_dssp CS
T ss_pred eC
Confidence 33
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.1e-06 Score=82.45 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=77.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|++++|+++.+.. ...+.+..=-.=+.|+|+.|+|..+.. ++.+.+|++|+|. .|.|+.+....|..+|+|+.|
T Consensus 52 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN-TNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC-CCcCcccCHhHhccCCcCCEE
Confidence 578888888876652 222223333455778998888887764 6788889999998 788888888888888999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++..+-. .++.++++|++|.+..+
T Consensus 130 ~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 130 RLYQNQLKSVPD--GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCSSCCSCCCT--TTTTTCTTCCEEECCSC
T ss_pred ECCCCccceeCH--HHhccCCCccEEEecCC
Confidence 998888876522 33677888888887765
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.7e-06 Score=85.33 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=44.8
Q ss_pred ceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhh
Q 035500 126 SCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
.-++|+|+.|+|..+. .++.+.+|++|+|. .|.|+.+..+.|..||+|+.|.+.+|++..+-..+ .++|++|
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~L~~L 128 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLV-NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-----PSSLVEL 128 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC-----CTTCCEE
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECC-CCccCccCHhHhhCcCCCCEEECCCCcCCccCccc-----cccCCEE
Confidence 3455666666666663 35666666666666 55666665556666666666666666665442211 1556666
Q ss_pred hhce
Q 035500 204 RFQM 207 (606)
Q Consensus 204 ~~~~ 207 (606)
.+..
T Consensus 129 ~l~~ 132 (332)
T 2ft3_A 129 RIHD 132 (332)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 6544
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-06 Score=94.44 Aligned_cols=101 Identities=20% Similarity=0.265 Sum_probs=55.8
Q ss_pred ccceEEEccCccccch---HHHhhccCCCceeEEEccccchhcc--ccccccccccEEecccCCCcccccccccccCccc
Q 035500 100 QKLRVVDLSNITLRND---NLLDLCQVGSSCHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYL 174 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l 174 (606)
..||++||+++.+..- .+..+ ..=+.|+|++|.|..+ ..++.+.+|++|+|. .|.|+.++...|..+|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASF----PHLEELELNENIVSAVEPGAFNNLFNLRTLGLR-SNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCSCCTTSSTTCTTC
T ss_pred CCCcEEECCCCccceECHhHccCC----CCCCEEECCCCccCEeChhhhhCCccCCEEECC-CCcCCccCcccccCCCCC
Confidence 3556666666544321 11111 1235566666666665 245566666666666 566666666666666666
Q ss_pred cEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 175 MCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 175 ~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+.|.+.+|++..+. -.++.++++|++|.+..
T Consensus 107 ~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~ 137 (477)
T 2id5_A 107 TKLDISENKIVILL--DYMFQDLYNLKSLEVGD 137 (477)
T ss_dssp CEEECTTSCCCEEC--TTTTTTCTTCCEEEECC
T ss_pred CEEECCCCccccCC--hhHccccccCCEEECCC
Confidence 66666666665441 12355566666665443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.12 E-value=2e-06 Score=82.61 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=82.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+.. ...+.+..=-+=+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+....|..+|+|+.|
T Consensus 28 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC-CCcCCccCHhHhcCccCCCEE
Confidence 478999999987652 222222222356789999999998874 6789999999999 889999999899999999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++..+-. .++.++++|++|.+..+
T Consensus 106 ~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 106 ALNTNQLQSLPD--GVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp ECCSSCCCCCCT--TTTTTCTTCCEEECCSS
T ss_pred EcCCCcCcccCH--hHhccCCcCCEEECCCC
Confidence 999999986622 34778999999987664
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.2e-05 Score=77.44 Aligned_cols=140 Identities=8% Similarity=-0.050 Sum_probs=96.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..+++. ++.+.++...+++|.+||..+++.+..+. .......++++++ +..+++...++.|.+||..+.
T Consensus 46 ~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~---~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~---- 115 (328)
T 3dsm_A 46 AQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT---GFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTY---- 115 (328)
T ss_dssp EEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE---CCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTT----
T ss_pred ceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC---CCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCC----
Confidence 4556664 44566666678999999999999988764 2356899999884 444444448999999999873
Q ss_pred ccccCCcceEEeecCC------CeEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATYYDFE------QLTSVHVNSTDDQFLASG-YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~------~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.....+.... ....+++ ..+.++++.. .++.|.+||+.+++.+..+.. ......++++|+|. +
T Consensus 116 ------~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~-l 185 (328)
T 3dsm_A 116 ------EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI--GIQPTSLVMDKYNK-M 185 (328)
T ss_dssp ------EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTSE-E
T ss_pred ------eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc--CCCccceEEcCCCC-E
Confidence 2333444322 4556767 3344444443 489999999999998888773 34457899999987 4
Q ss_pred EEEEeCC
Q 035500 593 LLLLHLT 599 (606)
Q Consensus 593 LaTgS~D 599 (606)
++++..+
T Consensus 186 ~v~~~~~ 192 (328)
T 3dsm_A 186 WTITDGG 192 (328)
T ss_dssp EEEBCCB
T ss_pred EEEECCC
Confidence 5555443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=98.12 E-value=9.3e-07 Score=86.87 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=69.1
Q ss_pred ceeEEEccccchhcccc--ccccccccEEecccCC-CcccccccccccCccccEEEccc-ccccchhhhhHHhhcCCchh
Q 035500 126 SCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCS-SLASLHEDCFSCMPYLMCLSMCE-TRIVNLWTTTAAISKLPYLM 201 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~-~~~~~~~~~~~~~p~l~~l~~~~-~~~~~l~~~~~~l~~~~~l~ 201 (606)
+=+.|+|++|+|..+.. ++.+++|++|.|. .| .|+.++...|..+|+|+.|.|.+ |++..+- ..++..+++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~-~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~--~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVS-IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID--PDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEE-CCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC--TTSEECCTTCC
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCC-CCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC--HHHhCCCCCCC
Confidence 45689999999999874 7889999999999 55 59999999999999999999998 9888662 23577899999
Q ss_pred hhhhceec
Q 035500 202 ELRFQMCL 209 (606)
Q Consensus 202 ~l~~~~~~ 209 (606)
+|.+..+.
T Consensus 109 ~L~l~~n~ 116 (239)
T 2xwt_C 109 FLGIFNTG 116 (239)
T ss_dssp EEEEEEEC
T ss_pred EEeCCCCC
Confidence 99987753
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.11 E-value=1.7e-06 Score=81.18 Aligned_cols=98 Identities=24% Similarity=0.322 Sum_probs=69.9
Q ss_pred eEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcc
Q 035500 103 RVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180 (606)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~ 180 (606)
++|+++++.+.. .=.++ +-.-+.|+|++|+|..+. .++.+.+|++|+|+ .|.|+.++.+-|..||+|+.|.|.
T Consensus 12 ~~l~~s~n~l~~-ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECC-CCCcCccChhhccCCCCCCEEECC
Confidence 567777755432 00112 234467888888888884 47788888888888 778888888888888888888888
Q ss_pred cccccchhhhhHHhhcCCchhhhhhce
Q 035500 181 ETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 181 ~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+|++..+-. .++.+|++|++|.+..
T Consensus 87 ~N~l~~~~~--~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 87 DNQLKSIPR--GAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SSCCCCCCT--TTTTTCTTCCEEECCS
T ss_pred CCccCEeCH--HHhcCCCCCCEEEeCC
Confidence 888876522 2467788888887654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.8e-06 Score=82.45 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=82.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcc--ccccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.++.-.-..++..=-.=+.|+|+.|+|..+ ..++.+.+|++|.|. .|.|+.+...-|..||+|+.|
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG-ENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC-CCcCCccCHHHhcCCCCCCEE
Confidence 37899999998765322111122223457899999999998 468889999999999 899999999999999999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++..+- -.++..+++|++|.+...
T Consensus 108 ~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 108 NLYDNQISCVM--PGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp ECCSSCCCEEC--TTSSTTCTTCCEEECTTC
T ss_pred ECCCCcCCeeC--HHHhhcCCCCCEEEeCCC
Confidence 99999988762 245778899999987653
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.7e-06 Score=96.36 Aligned_cols=103 Identities=22% Similarity=0.205 Sum_probs=57.4
Q ss_pred cceEEEccCccccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 101 KLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
+|+.++|+++.+..-. .+.++.=-.=+.|+|++|++..+. .++.+++|++|.|. .|.++.+....|..+|+|+.|.+
T Consensus 255 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNIS-SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS-ANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCC-TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECT-TCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccC-HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECc-cCCcCcCchhhhhccCcCCEEEC
Confidence 6777777765443210 111111123456777777766663 45566677777777 66666665556666666666666
Q ss_pred cccccc-chhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIV-NLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~-~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++. .+ ...++.++++|++|.+..
T Consensus 333 ~~n~~~~~~--~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 333 KGNTKRLEL--GTGCLENLENLRELDLSH 359 (606)
T ss_dssp CSCSSCCBC--CSSTTTTCTTCCEEECCS
T ss_pred CCCCccccc--chhhhhccCcCCEEECCC
Confidence 666554 11 112355666666666544
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0001 Score=84.46 Aligned_cols=149 Identities=10% Similarity=0.052 Sum_probs=99.7
Q ss_pred eEEEEcCCCCCEEEEEeCCCc--------------EEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEEECC
Q 035500 441 RQFEYNPSNPSLMAFGTLDGE--------------VIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS 504 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGt--------------VrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D 504 (606)
..++|+| | +.|+.++.|+. |++|++.++.. ...+....|...+.++.|+| ++.+++..+.+
T Consensus 212 ~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~ 288 (741)
T 1yr2_A 212 SGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSE 288 (741)
T ss_dssp CCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEEC
T ss_pred ccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEc
Confidence 4678999 7 88888887664 89999987653 23333334445689999999 56777766654
Q ss_pred C-----eEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCC----CcEEEEECCCC--ceeEEE
Q 035500 505 G-----CVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYS----KNVALYDINTE--KPLQLF 572 (606)
Q Consensus 505 g-----tIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~D----g~I~IWDlrt~--k~v~~l 572 (606)
+ .|.+||+.++.. .+...+. +...+... +.|+|+.|+..+.+ +.|.+||+.++ +....+
T Consensus 289 ~~~~~~~l~~~d~~~~~~--------~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~ 359 (741)
T 1yr2_A 289 GTDPVNTVHVARVTNGKI--------GPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV 359 (741)
T ss_dssp TTCSCCEEEEEEEETTEE--------CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE
T ss_pred cCCCcceEEEEECCCCCC--------cccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe
Confidence 3 899999876310 1123333 33344444 34888887777653 45999999875 334444
Q ss_pred cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 573 TDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+ .+...+..+.|+ +..++++...|+..+.
T Consensus 360 ~-~~~~~l~~~~~~--~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 360 P-ESKDNLESVGIA--GNRLFASYIHDAKSQV 388 (741)
T ss_dssp C-CCSSEEEEEEEE--BTEEEEEEEETTEEEE
T ss_pred c-CCCCeEEEEEEE--CCEEEEEEEECCEEEE
Confidence 4 455667777776 5568899998987764
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=9.8e-06 Score=88.51 Aligned_cols=83 Identities=10% Similarity=0.074 Sum_probs=66.3
Q ss_pred ceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 126 SCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+-+.|+|+.|.+......+.+++|++|.|. .|.|+......|..||+|+.|.+.+|++..+-.-..++.++++|++|.+
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFS-NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECC-SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeE-CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 356788888887776655789999999999 8889886667789999999999999999876333355888999999987
Q ss_pred ceec
Q 035500 206 QMCL 209 (606)
Q Consensus 206 ~~~~ 209 (606)
..+.
T Consensus 382 s~N~ 385 (520)
T 2z7x_B 382 SQNS 385 (520)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 7643
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.5e-06 Score=79.92 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=73.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+.. .....+..=-.=+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+....|..+|+|+.|
T Consensus 28 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH-ENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC-CCCccccCHHHhhCCcccCEE
Confidence 467888888876542 111112222345678888888887764 5778888888888 778888888888888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++..+-. ..+.++++|++|.++..
T Consensus 106 ~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 106 ALDTNQLKSVPD--GIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp ECCSSCCSCCCT--TTTTTCTTCCEEECCSS
T ss_pred ECcCCcceEeCH--HHhcCCcccCEEEecCC
Confidence 888888876522 23566788888876654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.6e-06 Score=85.20 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=63.3
Q ss_pred ccceEEEccCccccch---HHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccE
Q 035500 100 QKLRVVDLSNITLRND---NLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
.+|+.++|+++.+..- .+..| ..=+.|+|++|++..+.. .-+.+|++|.|. .|.|+.+....|..||+|+.
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l----~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPL----VKLERLYLSKNQLKELPE-KMPKTLQELRVH-ENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTC----TTCCEEECCSSCCSBCCS-SCCTTCCEEECC-SSCCCBBCHHHHTTCTTCCE
T ss_pred CCCCEEECCCCcCCeeCHHHhcCC----CCCCEEECCCCcCCccCh-hhcccccEEECC-CCcccccCHhHhcCCccccE
Confidence 4577777776654421 12111 234567777777765542 124677777777 66777777667777777777
Q ss_pred EEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 177 LSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 177 l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
|.|.+|++........++.++++|++|.+..
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 7777777765444456667777777776544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00018 Score=73.90 Aligned_cols=148 Identities=10% Similarity=0.091 Sum_probs=100.0
Q ss_pred ceeEEEEcCCCCCEEEEEeC------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCE-EEEEECCCeEEEEe
Q 035500 439 RPRQFEYNPSNPSLMAFGTL------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSK-LVAGSDSGCVRLFD 511 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~-LaSgS~DgtIklWD 511 (606)
++..++++| +++++++... .+.|..++ +++..... .+.....+++|+|+ ++. .++.+.++.|.+||
T Consensus 135 ~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~---~~~~~~~~i~~s~d-g~~lyv~~~~~~~I~~~d 207 (326)
T 2ghs_A 135 RSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF---ADISIPNSICFSPD-GTTGYFVDTKVNRLMRVP 207 (326)
T ss_dssp EEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE---EEESSEEEEEECTT-SCEEEEEETTTCEEEEEE
T ss_pred CCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee---CCCcccCCeEEcCC-CCEEEEEECCCCEEEEEE
Confidence 478899999 8887765542 24566666 45543322 22345789999984 454 45556788999999
Q ss_pred CC--CC-CCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe-
Q 035500 512 LN--HI-PPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS- 586 (606)
Q Consensus 512 l~--~~-~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs- 586 (606)
+. .+ .. .....+..+.. ......+++.++|+++++...++.|..||. +++.+..+. .+...+++++|.
T Consensus 208 ~~~~~Gl~~-----~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~-~~~~~~~~~af~g 280 (326)
T 2ghs_A 208 LDARTGLPT-----GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFIG 280 (326)
T ss_dssp BCTTTCCBS-----SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEES
T ss_pred cccccCCcc-----cCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE-CCCCCcEEEEEec
Confidence 86 32 11 00111222221 234678999999998888877789999998 577777777 466689999998
Q ss_pred CCCCeEEEEEeCCC
Q 035500 587 HHSPLCLLLLHLTT 600 (606)
Q Consensus 587 P~g~~LLaTgS~Dg 600 (606)
|++..+++++..++
T Consensus 281 ~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 281 PDASRLLVTSAREH 294 (326)
T ss_dssp TTSCEEEEEEBCTT
T ss_pred CCCCEEEEEecCCC
Confidence 88888888777664
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00035 Score=68.63 Aligned_cols=146 Identities=3% Similarity=-0.051 Sum_probs=104.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.++++++ ++++.++...++.|.+||.. ++... +....+...+.++++.+ ++..+++...++.|..||... .
T Consensus 22 p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~g-~--- 93 (300)
T 2qc5_A 22 PYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKKG-G--- 93 (300)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTS-C---
T ss_pred cceeeECC-CCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCCC-C---
Confidence 78899999 88888887788999999988 65543 33334446799999997 556677666688999998773 1
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeE-EEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQ-LFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~-~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
....... ....+.++++.+++.++++...++.|..||.. ++... .+. .....++.+++.|++. ++++..
T Consensus 94 ------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~~~i~~d~~g~-l~v~~~ 164 (300)
T 2qc5_A 94 ------FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP-NKGSYPAFITLGSDNA-LWFTEN 164 (300)
T ss_dssp ------EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS-STTCCEEEEEECTTSS-EEEEET
T ss_pred ------eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC-CCCCCceeEEECCCCC-EEEEec
Confidence 1111111 23458999999999988888778899999988 55442 223 2456789999999988 666666
Q ss_pred CCCeE
Q 035500 598 LTTMS 602 (606)
Q Consensus 598 ~DgtI 602 (606)
.++.|
T Consensus 165 ~~~~i 169 (300)
T 2qc5_A 165 QNNSI 169 (300)
T ss_dssp TTTEE
T ss_pred CCCeE
Confidence 55544
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=98.09 E-value=3.4e-06 Score=90.38 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=94.6
Q ss_pred ccceeeeccCCCcccchhHHHHHHHHh--hccceEEEccCccccchHHHhhccCCC----ceeEEEccccchhc------
Q 035500 72 DIEAVDILSKRPCFLKEEYIMSLMHAI--DQKLRVVDLSNITLRNDNLLDLCQVGS----SCHVLILRATNIRK------ 139 (606)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------ 139 (606)
.+..+|+. .|.+....+-.+-.++ +.+|+.+||+++.++...+..+++.=. .=+.|+|++|.|..
T Consensus 29 ~L~~L~L~---~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 29 QCQVVRLD---DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp TCSEEEEE---SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CccEEEcc---CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 45666664 4556666544444443 478999999999888776666654322 46789999999885
Q ss_pred cccccccccccEEecccCCCccc-----ccccccccCccccEEEcccccccchh--hhhHHhhcCCchhhhhhcee
Q 035500 140 LNMVGRFMHLNTLSLDFCSSLAS-----LHEDCFSCMPYLMCLSMCETRIVNLW--TTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 140 l~~~~~~~~l~tl~l~~~~~~~~-----~~~~~~~~~p~l~~l~~~~~~~~~l~--~~~~~l~~~~~l~~l~~~~~ 208 (606)
...++.+++|++|+|. .|.|+. +.+.++...++|+.|.+.+|++.... .-..++.++++|++|.+..|
T Consensus 106 ~~~l~~~~~L~~L~Ls-~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLS-DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHTTSCTTCCEEECC-SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHccCCceeEEECC-CCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 3456788899999999 677764 34455667889999999999888643 12356777899999986654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=3.2e-06 Score=86.99 Aligned_cols=99 Identities=20% Similarity=0.237 Sum_probs=70.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCccc--ccccccccCcccc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLAS--LHEDCFSCMPYLM 175 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~--~~~~~~~~~p~l~ 175 (606)
.+|+.++|+++.+.. .-..++ -+=+.|+|++|+|..+.. ++.+.+|++|.|. .|.++. +....|..||+|+
T Consensus 100 ~~L~~L~Ls~n~l~~-l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 100 VKLERLYLSKNQLKE-LPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELG-TNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TTCCEEECCSSCCSB-CCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC-SSCCCGGGBCTTGGGGCTTCC
T ss_pred CCCCEEECCCCcCCc-cChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECC-CCcCCccCcChhhccCCCCcC
Confidence 589999999876652 111121 355779999998888764 6788899999998 777865 5566788889999
Q ss_pred EEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 176 CLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 176 ~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+.+|++..+...+ .++|++|.+..+
T Consensus 175 ~L~l~~n~l~~l~~~~-----~~~L~~L~l~~n 202 (330)
T 1xku_A 175 YIRIADTNITTIPQGL-----PPSLTELHLDGN 202 (330)
T ss_dssp EEECCSSCCCSCCSSC-----CTTCSEEECTTS
T ss_pred EEECCCCccccCCccc-----cccCCEEECCCC
Confidence 9999888887663322 267777776543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.4e-05 Score=87.88 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=95.7
Q ss_pred eeEEEEcCCCCCEEEEE-----eCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe--------
Q 035500 440 PRQFEYNPSNPSLMAFG-----TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC-------- 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSG-----s~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt-------- 506 (606)
+..++||| |++++|.+ +.+.+|++||+++|+.+.. ...+. ...+++|+ + +..|+.++.|..
T Consensus 131 l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~--k~~~~~Ws-D-g~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 131 LDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDV--KFSGISWL-G-NEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp EEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEE--ESCCCEEE-T-TTEEEEEESSCCC-------
T ss_pred EEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCc--eeccEEEe-C-CCEEEEEEecCccccccccc
Confidence 77789999 99998853 3346899999999986542 11111 12467899 4 567777777743
Q ss_pred -----EEEEeCCCCCCCcccccCCcceEEeecC----CCeEEEEEccCCCEEEE-EeC---CCcEEEEECCCCc-eeEEE
Q 035500 507 -----VRLFDLNHIPPKVADARGNSSVATYYDF----EQLTSVHVNSTDDQFLA-SGY---SKNVALYDINTEK-PLQLF 572 (606)
Q Consensus 507 -----IklWDl~~~~~~~~~l~~~~~i~t~~~~----~~V~sV~~sp~g~~LaS-gs~---Dg~I~IWDlrt~k-~v~~l 572 (606)
|++|++.+.. ......+... ..+.++.|+|+|++++. .+. ++.|.+||+.++. ....+
T Consensus 205 ~~~~~v~~~~lgt~~--------~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQ--------EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp CCCCEEEEEETTSCG--------GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred CCCcEEEEEECCCCc--------ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 9999987742 1223334332 23788999999986643 332 2589999998774 34555
Q ss_pred cCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 573 TDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
. .+....... |++++..+++.+..|
T Consensus 277 ~-~~~~~~~~~-~~~~g~~l~~~t~~~ 301 (693)
T 3iuj_A 277 Q-GDLDADVSL-VDNKGSTLYLLTNRD 301 (693)
T ss_dssp E-CSSSSCEEE-EEEETTEEEEEECTT
T ss_pred e-CCCCceEEE-EeccCCEEEEEECCC
Confidence 5 456666555 677777777777655
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00019 Score=76.61 Aligned_cols=149 Identities=9% Similarity=-0.015 Sum_probs=104.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEE--eccCCCCCE-E-EEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYI--PSIGGTNSV-L-GLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~--~~~gH~~~V-~-~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+.+++++|.++ .|..+..+++|+.||..++...... ...++...- . +++|+|.++.++++-+.++.|+.|+....
T Consensus 221 p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 221 IGAVALDETEE-WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE 299 (409)
T ss_dssp CCBCEECTTSS-EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred cEEEEEeCCCC-eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC
Confidence 66788999545 5555777899999999877643220 012332222 3 99999965667777788899999987652
Q ss_pred CCCcccccCCcceEEeec----------------CCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCC--
Q 035500 516 PPKVADARGNSSVATYYD----------------FEQLTSVHVNSTDDQFLASG-YSKNVALYDINTEKPLQLFTDMH-- 576 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~----------------~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k~v~~l~~gH-- 576 (606)
+..+.+ ......++++|+|+++++-+ .++.|+.||+.+++... +. ++
T Consensus 300 ------------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~-g~~~ 365 (409)
T 3hrp_A 300 ------------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-VA-GQVD 365 (409)
T ss_dssp ------------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-EE-ECTT
T ss_pred ------------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-Ee-CCCC
Confidence 111111 13378999999999888888 88999999987776433 32 22
Q ss_pred -------------CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 577 -------------REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 577 -------------~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
-.....++++|++ .++++-..++.||.
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRK 405 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEE
Confidence 2458899999995 57888888888874
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.4e-06 Score=88.91 Aligned_cols=106 Identities=22% Similarity=0.216 Sum_probs=73.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|++++|+++.+..-.-. -+..=..=+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.++...|..+|+|+.|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS-YNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC-CCcCCcCCHhHhCCCccCCEE
Confidence 5788888888765432111 1122234567888888888774 47778888888888 778888887778888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+|++..+.. ...+.++++|++|.+..|
T Consensus 130 ~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 130 NLLGNPYKTLGE-TSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp ECTTCCCSSSCS-SCSCTTCTTCCEEEEEES
T ss_pred ECCCCCCcccCc-hhhhccCCCCcEEECCCC
Confidence 888888775511 124677888888887664
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00063 Score=66.81 Aligned_cols=147 Identities=4% Similarity=-0.095 Sum_probs=102.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..+++++ ++++.++...++.|..||.. ++.. .+........+.++++.+ ++.++++...++.|..||... .
T Consensus 64 ~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~--- 135 (300)
T 2qc5_A 64 VMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTADG-T--- 135 (300)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTTS-C---
T ss_pred ceeEEECC-CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCCC-C---
Confidence 77889998 88888877778999999988 6553 333323446789999997 557777766688999998763 1
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
....... ....+.++++.++++++++...++.|..||. +++........+...+..+++++++. ++++...
T Consensus 136 ------~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~ 207 (300)
T 2qc5_A 136 ------IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIM 207 (300)
T ss_dssp ------EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETT
T ss_pred ------EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEEEccC
Confidence 1111122 2345889999999998777777889999998 55544322113456789999999886 5666655
Q ss_pred CCeE
Q 035500 599 TTMS 602 (606)
Q Consensus 599 DgtI 602 (606)
.+.|
T Consensus 208 ~~~i 211 (300)
T 2qc5_A 208 GNKI 211 (300)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 5443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00025 Score=71.47 Aligned_cols=147 Identities=11% Similarity=0.049 Sum_probs=96.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
.....|+|.++.++++...+++|..||..++... .+ .....+.++++++ ++.+++ +. ++.|.+||..++..
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~---~~~~~~~~i~~~~-dG~l~v-~~-~~~l~~~d~~~g~~-- 85 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV---TMDAPVSSVALRQ-SGGYVA-TI-GTKFCALNWKEQSA-- 85 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE---ECSSCEEEEEEBT-TSSEEE-EE-TTEEEEEETTTTEE--
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE---eCCCceEEEEECC-CCCEEE-EE-CCeEEEEECCCCcE--
Confidence 3356799966777888888999999999887653 23 2346799999998 455444 44 56899999876321
Q ss_pred ccccCCcceEEeec---CCCeEEEEEccCCCEEEEEeCC---------CcEEEEECCC-CceeEEEcCCCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGYS---------KNVALYDINT-EKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 520 ~~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~D---------g~I~IWDlrt-~k~v~~l~~gH~~~I~sV~fs 586 (606)
..+..... ...++++++.|+|+++++...+ ..-.+|.+.. ++...... +....+.++|+
T Consensus 86 ------~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~pngi~~s 157 (297)
T 3g4e_A 86 ------VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD--QVDISNGLDWS 157 (297)
T ss_dssp ------EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE--EESBEEEEEEC
T ss_pred ------EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee--ccccccceEEc
Confidence 11111111 1237899999999977765322 2334554443 33333222 34567899999
Q ss_pred CCCCeEEEEEeCCCeEE
Q 035500 587 HHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIR 603 (606)
|++..++++.+.++.|.
T Consensus 158 pdg~~lyv~~~~~~~i~ 174 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVD 174 (297)
T ss_dssp TTSCEEEEEEGGGTEEE
T ss_pred CCCCEEEEecCCCCcEE
Confidence 99998888888777664
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.1e-06 Score=80.32 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=68.3
Q ss_pred eEEEccCccccchHHH-hhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEcc
Q 035500 103 RVVDLSNITLRNDNLL-DLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180 (606)
Q Consensus 103 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~ 180 (606)
++|+++++.+.. +- .+. -.-+.|+|++|+|..+. .++.+.+|++|.|. .|.|+.+..+-|..||+|+.|.|.
T Consensus 13 ~~l~~~~~~l~~--ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKV--LPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLS-NNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSS--CCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCc--CCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECC-CCcCCEeCHhHccCCCCCCEEECC
Confidence 467777654331 11 121 24567888888888874 67778888888888 888888888888888888888888
Q ss_pred cccccchhhhhHHhhcCCchhhhhhce
Q 035500 181 ETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 181 ~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+|++..+- ..++..|++|+.|.+..
T Consensus 87 ~N~l~~i~--~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 87 YNRLRCIP--PRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp SSCCCBCC--TTTTTTCTTCCEEECCS
T ss_pred CCccCEeC--HHHhCCCCCCCEEECCC
Confidence 88887662 13466677777666433
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.4e-05 Score=84.06 Aligned_cols=210 Identities=12% Similarity=0.085 Sum_probs=124.8
Q ss_pred CccceeeeccCCCcccchhHHHHHHHH--hhccceEEEccCccccchHHHhhccC---C---------CceeEEEccccc
Q 035500 71 FDIEAVDILSKRPCFLKEEYIMSLMHA--IDQKLRVVDLSNITLRNDNLLDLCQV---G---------SSCHVLILRATN 136 (606)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~ 136 (606)
..+..+|+. .+.+..+-+..+..+ -+.+|+.++|+++.++......+... - ..=+.|+|+.|+
T Consensus 94 ~~L~~L~Ls---~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 94 PKLHTVRLS---DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCCEEECC---SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred CcccEEECC---CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 567777773 344555433333222 35789999999988875444433321 0 244569999988
Q ss_pred hhcc--c----cccccccccEEecccCCCccc-----ccccccccCccccEEEcccccccch--hhhhHHhhcCCchhhh
Q 035500 137 IRKL--N----MVGRFMHLNTLSLDFCSSLAS-----LHEDCFSCMPYLMCLSMCETRIVNL--WTTTAAISKLPYLMEL 203 (606)
Q Consensus 137 ~~~l--~----~~~~~~~l~tl~l~~~~~~~~-----~~~~~~~~~p~l~~l~~~~~~~~~l--~~~~~~l~~~~~l~~l 203 (606)
|..- . .++.+++|++|+|. .|.|+. +.+..|..+|+|+.|.|.+|++..- -.-..++.++|+|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~-~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMV-QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECC-SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECc-CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 8532 2 44567889999999 778872 3334678889999999999988532 1123467888899988
Q ss_pred hhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhcccchhhhhccCCCCCCCcce----
Q 035500 204 RFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLRTMNLMELSSCLSPNLNGHAE---- 279 (606)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---- 279 (606)
.++.|.- ++ .......+.+.. +.+..|..|++.+|++-.
T Consensus 250 ~L~~n~i---~~---------------------~~~~~l~~~l~~-------------~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 250 GLNDCLL---SA---------------------RGAAAVVDAFSK-------------LENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp ECTTCCC---CH---------------------HHHHHHHHHHHT-------------CSSCCCCEEECCSSCCBHHHHH
T ss_pred ECCCCCC---ch---------------------hhHHHHHHHHhh-------------ccCCCeEEEECcCCcCCHHHHH
Confidence 8766530 00 000000111100 113456666666666543
Q ss_pred -ecccccCCCCCCCCcccccccccc-hhhhhhhccCCCCcccchhhHHHHHhhCCCceecc
Q 035500 280 -MLDEVNDSNEFPGGAHKQDLMDAN-VKLKKYISHHPSPICFEKHYREYMIASLPQLEVLD 338 (606)
Q Consensus 280 -~~~~~~~~~~~~~~~~~~~~~l~~-v~L~~~l~~~~npi~~~~~YReyvI~~Lp~LkvLD 338 (606)
+.+.+. .+ -.|+ ++.+.+|++.....|.+.+...+|.++.++
T Consensus 293 ~l~~~l~----------------~~l~~L~-~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~ 336 (386)
T 2ca6_A 293 TLKTVID----------------EKMPDLL-FLELNGNRFSEEDDVVDEIREVFSTRGRGE 336 (386)
T ss_dssp HHHHHHH----------------HHCTTCC-EEECTTSBSCTTSHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHH----------------hcCCCce-EEEccCCcCCcchhHHHHHHHHhhhcCcch
Confidence 222221 11 1344 777888888888888888888888776543
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=6.4e-06 Score=93.07 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=13.9
Q ss_pred cchhhhhccCCCCCCCcceeccc
Q 035500 261 MNLMELSSCLSPNLNGHAEMLDE 283 (606)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~ 283 (606)
|+-+..|+.|++.+|++-.+.+.
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~~ 578 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPAS 578 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccccCcceeECCCCCCCcCCHh
Confidence 34455677777777766655444
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=89.87 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=75.2
Q ss_pred CCCcccchhHHHHHHHHhhccceEEEccCccccchHHHh-hccCCCceeEEEccccchhccccccccccccEEecccCCC
Q 035500 81 KRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLD-LCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSS 159 (606)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~ 159 (606)
..+|....+-.-.+-.....+|+.++|+++.+.. +-. + +..-+.|+|++|+|..+. +.+.+|++|+|. .|.
T Consensus 40 ~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~--lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls-~N~ 111 (571)
T 3cvr_A 40 ALPGENRNEAVSLLKECLINQFSELQLNRLNLSS--LPDNL---PPQITVLEITQNALISLP--ELPASLEYLDAC-DNR 111 (571)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC--CCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECC-SSC
T ss_pred CCccccccchhhhccccccCCccEEEeCCCCCCc--cCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEcc-CCC
Confidence 4556554332222224445588899998876653 222 3 245677999999888877 678889999998 778
Q ss_pred cccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 160 LASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 160 ~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|+.|+. |.. +|+.|.|.+|++..+ .. .+++|++|.+.++
T Consensus 112 l~~ip~--l~~--~L~~L~Ls~N~l~~l----p~--~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 112 LSTLPE--LPA--SLKHLDVDNNQLTML----PE--LPALLEYINADNN 150 (571)
T ss_dssp CSCCCC--CCT--TCCEEECCSSCCSCC----CC--CCTTCCEEECCSS
T ss_pred CCCcch--hhc--CCCEEECCCCcCCCC----CC--cCccccEEeCCCC
Confidence 888876 433 888888888888775 33 5778888876553
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.9e-05 Score=87.52 Aligned_cols=82 Identities=11% Similarity=0.087 Sum_probs=67.7
Q ss_pred ceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 126 SCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
.-+.|+++.|.+..+...+.+.+|++|.|. .|.|+.....-|..+|+|+.|.+.+|++..+-.-..++.++++|++|.+
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFT-QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECC-SSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred cceEEEccCCCcccccCccCCCCceEEECC-CCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 467788888888777766789999999999 8889986667789999999999999999876444456888999999987
Q ss_pred cee
Q 035500 206 QMC 208 (606)
Q Consensus 206 ~~~ 208 (606)
..+
T Consensus 411 ~~N 413 (562)
T 3a79_B 411 SLN 413 (562)
T ss_dssp TTS
T ss_pred CCC
Confidence 764
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.00 E-value=4.5e-06 Score=75.78 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=79.9
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhc-cc-cccccccccEEecccCCCcccccc-cccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRK-LN-MVGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~ 176 (606)
.+|+.++|+++.+..- .-...=..=++|+|+.|+|.. +. .++.+++|++|+|. .|.|+.++. ..|..||+|+.
T Consensus 42 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls-~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 42 EELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS-GNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT-TSCCCSHHHHGGGGGCTTCCE
T ss_pred CCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC-CCcCCChHHHHHHhhCCCCCE
Confidence 5799999999876543 222333356789999999998 55 34469999999999 888999853 56999999999
Q ss_pred EEcccccccchhhh-hHHhhcCCchhhhhhc
Q 035500 177 LSMCETRIVNLWTT-TAAISKLPYLMELRFQ 206 (606)
Q Consensus 177 l~~~~~~~~~l~~~-~~~l~~~~~l~~l~~~ 206 (606)
|.+.+|++..+-.. ...+..+|+|++|.++
T Consensus 118 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 118 LDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999999877321 1458889999988753
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=7e-06 Score=90.88 Aligned_cols=100 Identities=28% Similarity=0.317 Sum_probs=61.3
Q ss_pred cceEEEccCccccc---hHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCcccc
Q 035500 101 KLRVVDLSNITLRN---DNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLM 175 (606)
Q Consensus 101 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~ 175 (606)
.++++||+.|.+.. +.+..| -.=++|||++|+|..+. .++.+.+|++|+|. .|+|+.++.+.|..+++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l----~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls-~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSF----PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTC----TTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECGGGGTTCTTCC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCC----CCCCEEECCCCcCCCcChhHhcCCCCCCEEEcc-CCcCCCCCHHHhcCCCCCC
Confidence 46777777754421 111211 12356777777777765 35667777777777 6667777777777777777
Q ss_pred EEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 176 CLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 176 ~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+.+|++..+-. .++.+|++|++|.+..
T Consensus 128 ~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 128 KLVAVETNLASLEN--FPIGHLKTLKELNVAH 157 (635)
T ss_dssp EEECTTSCCCCSTT--CCCTTCTTCCEEECCS
T ss_pred EEECCCCcCCCCCh--hhhhcCcccCeecccc
Confidence 77777777665511 2356667777776443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00043 Score=71.02 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=94.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
.....|+|..+.+++++..++.|..||..+++... +. +...+.+++|.|+ +.+++ ++.+ .|.+||..++..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~---~~~~v~~i~~~~d-g~l~v-~~~~-gl~~~d~~~g~~-- 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA---LPFMGSALAKISD-SKQLI-ASDD-GLFLRDTATGVL-- 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE---CSSCEEEEEEEET-TEEEE-EETT-EEEEEETTTCCE--
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE---CCCcceEEEEeCC-CeEEE-EECC-CEEEEECCCCcE--
Confidence 34567999556677777788999999998776532 22 2457999999984 45554 4444 489999876321
Q ss_pred ccccCCcceEEeec---CCCeEEEEEccCCCEEEEEeC------CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 520 ADARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGY------SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 520 ~~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~------Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
..+..... ...++++.++|+|+++++... .+.|..+| +++...... +....+.++|+|++.
T Consensus 122 ------~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~ 191 (326)
T 2ghs_A 122 ------TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGT 191 (326)
T ss_dssp ------EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSC
T ss_pred ------EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCC
Confidence 01111111 124889999999997776542 24555666 454433222 335678999999999
Q ss_pred eEEEEEeCCCeEE
Q 035500 591 LCLLLLHLTTMSR 603 (606)
Q Consensus 591 ~LLaTgS~DgtIR 603 (606)
.++++.+.++.|.
T Consensus 192 ~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 192 TGYFVDTKVNRLM 204 (326)
T ss_dssp EEEEEETTTCEEE
T ss_pred EEEEEECCCCEEE
Confidence 8777777666654
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-05 Score=83.99 Aligned_cols=162 Identities=14% Similarity=0.195 Sum_probs=102.8
Q ss_pred eEEEeeccccCCCchhHHHHhhhcCcCccceeeeccCCCcccchhHHHHHHHHhhccceEEEccCccccchHHHhhccC-
Q 035500 45 SILVYLDQLKNADIYPLIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQV- 123 (606)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 123 (606)
.+.+-=.++.+.....+.+++... ...++.+|+-+-.-.....+.....++....+|+.++|+++.++......+++.
T Consensus 55 ~L~Ls~N~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 133 (362)
T 3goz_A 55 SLNLSGNSLGFKNSDELVQILAAI-PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTS-CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred EEECcCCCCCHHHHHHHHHHHhcc-CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH
Confidence 455544566666666666665433 256777777433322233344444555555789999999998877766655432
Q ss_pred ---CCceeEEEccccchhccc------cccccc-cccEEecccCCCccccccc----ccccCc-cccEEEcccccccchh
Q 035500 124 ---GSSCHVLILRATNIRKLN------MVGRFM-HLNTLSLDFCSSLASLHED----CFSCMP-YLMCLSMCETRIVNLW 188 (606)
Q Consensus 124 ---~~~~~~~~~~~~~~~~l~------~~~~~~-~l~tl~l~~~~~~~~~~~~----~~~~~p-~l~~l~~~~~~~~~l~ 188 (606)
.-+=+.|+|++|+|.... .+..++ +|++|+|. .|.|+..... .+..+| +|+.|.|.+|+|...-
T Consensus 134 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR-GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp TTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec-CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 235577999999888432 223454 89999999 7788877542 345564 9999999999887611
Q ss_pred h--hhHHhhcC-Cchhhhhhcee
Q 035500 189 T--TTAAISKL-PYLMELRFQMC 208 (606)
Q Consensus 189 ~--~~~~l~~~-~~l~~l~~~~~ 208 (606)
. -..++.++ ++|++|.+..+
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHHHhcCCCCceEEECcCC
Confidence 0 12345554 48888886654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=7.9e-06 Score=90.93 Aligned_cols=106 Identities=19% Similarity=0.107 Sum_probs=69.2
Q ss_pred ccceEEEccCccccchH-HHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccc-cccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDN-LLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~ 176 (606)
.+|+.++|+++.+...- +..-...-..=+.|+|+.|.+..+. .++.+++|.+|.|. .|.++.+.. ..|..+|+|+.
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ-HSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECT-TSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECC-CCccCCccChhhhhccccCCE
Confidence 57888888887654210 0111112234466888888777765 55677788888888 677777655 56777888888
Q ss_pred EEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 177 LSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 177 l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|.+.+|++.... -.++..+++|++|.+..|
T Consensus 429 L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 429 LDISYTNTKIDF--DGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EECTTSCCEECC--TTTTTTCTTCCEEECTTC
T ss_pred EECcCCCCCccc--hhhhcCCCCCCEEECCCC
Confidence 888888776532 234667777777776654
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.1e-05 Score=87.83 Aligned_cols=188 Identities=17% Similarity=0.159 Sum_probs=123.0
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+||.+||+++.+..- ..++ .=-.=+.|+|+.|+|..+. ++.+.+|++|+|. .|.|+.++ |..+|+|+.|.+
T Consensus 42 ~~L~~L~Ls~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls-~N~l~~~~---~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM--TGIE-KLTGLTKLICTSNNITTLD-LSQNTNLTYLACD-SNKLTNLD---VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC--TTGG-GCTTCSEEECCSSCCSCCC-CTTCTTCSEEECC-SSCCSCCC---CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC--hhhc-ccCCCCEEEccCCcCCeEc-cccCCCCCEEECc-CCCCceee---cCCCCcCCEEEC
Confidence 5799999999766531 1221 1124567999999999997 8899999999999 88899984 899999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchh---
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPK--- 256 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 256 (606)
.+|++..++ +.++++|++|.+..+. =++-. .+ .+.+.-+++.+.
T Consensus 114 ~~N~l~~l~-----~~~l~~L~~L~l~~N~---l~~l~---l~----------------------~l~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 114 DTNKLTKLD-----VSQNPLLTYLNCARNT---LTEID---VS----------------------HNTQLTELDCHLNKK 160 (457)
T ss_dssp CSSCCSCCC-----CTTCTTCCEEECTTSC---CSCCC---CT----------------------TCTTCCEEECTTCSC
T ss_pred CCCcCCeec-----CCCCCcCCEEECCCCc---cceec---cc----------------------cCCcCCEEECCCCCc
Confidence 999998872 8889999999876542 11110 00 111222223322
Q ss_pred --hhcccchhhhhccCCCCCCCcceecccccC-CCCCCCCcccccc-c--ccch-hhhhhhccCCCCcccchhhHHHHHh
Q 035500 257 --YLRTMNLMELSSCLSPNLNGHAEMLDEVND-SNEFPGGAHKQDL-M--DANV-KLKKYISHHPSPICFEKHYREYMIA 329 (606)
Q Consensus 257 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~--l~~v-~L~~~l~~~~npi~~~~~YReyvI~ 329 (606)
.+ .+.-+..|..|++.+|++-.+. +.. +++....+..|.+ . ++.. .|+ ++.+..|.+...+ +.
T Consensus 161 ~~~~-~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~-~L~Ls~N~l~~ip------~~ 230 (457)
T 3bz5_A 161 ITKL-DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLT-FLDCSSNKLTEID------VT 230 (457)
T ss_dssp CCCC-CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCS-EEECCSSCCSCCC------CT
T ss_pred cccc-ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeeccccCCCCC-EEECcCCcccccC------cc
Confidence 11 3445667888888888776643 333 4444555555544 1 1111 455 6666777776643 45
Q ss_pred hCCCceecc
Q 035500 330 SLPQLEVLD 338 (606)
Q Consensus 330 ~Lp~LkvLD 338 (606)
.+++|+.|+
T Consensus 231 ~l~~L~~L~ 239 (457)
T 3bz5_A 231 PLTQLTYFD 239 (457)
T ss_dssp TCTTCSEEE
T ss_pred ccCCCCEEE
Confidence 667777665
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-05 Score=87.84 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=41.8
Q ss_pred eEEEccccchhccc----cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhh
Q 035500 128 HVLILRATNIRKLN----MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 128 ~~~~~~~~~~~~l~----~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
+.|+|+.|++..+. .++.+++|++|+|. .|.++.+....|..+|+|+.|.+.+|++... ....++..+++|++|
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLS-YNEPLSLKTEAFKECPQLELLDLAFTRLKVK-DAQSPFQNLHLLKVL 430 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECC-SCSCEEECTTTTTTCTTCSEEECTTCCEECC-TTCCTTTTCTTCCEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECC-CCcCCcCCHHHhcCCccCCeEECCCCcCCCc-ccchhhhCcccCCEE
Confidence 45555555555543 34455666666666 5555555555566666666666666655432 111224455556655
Q ss_pred hhce
Q 035500 204 RFQM 207 (606)
Q Consensus 204 ~~~~ 207 (606)
.+..
T Consensus 431 ~l~~ 434 (606)
T 3t6q_A 431 NLSH 434 (606)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 5544
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.9e-06 Score=84.40 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=65.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+..-....++..-..=++|+|+.|.|..+.....+++|++|.|+ .|.|+.+++. |..+|+|+.|.+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~-~~~l~~L~~L~L 221 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS-SNKLAFMGPE-FQSAAGVTWISL 221 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC-SSCCCEECGG-GGGGTTCSEEEC
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECC-CCcCCcchhh-hcccCcccEEEC
Confidence 46777777776655443334433223445677777777776655567777777777 6677777665 667777777777
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+- .++..+++|++|.+..+
T Consensus 222 ~~N~l~~l~---~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 222 RNNKLVLIE---KALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TTSCCCEEC---TTCCCCTTCCEEECTTC
T ss_pred cCCcccchh---hHhhcCCCCCEEEccCC
Confidence 777776552 23566677777765543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-05 Score=85.74 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=36.6
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+.|+|+.|++..+. .++.+++|++|+|. .|.|+.+....|..||+|+.|.|.+|++..+ ...++..+++|++|.+
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLA-QNEINKIDDNAFWGLTHLLKLNLSQNFLGSI--DSRMFENLDKLEVLDL 354 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CGGGGTTCTTCCEEEC
T ss_pred eEEEecCccccccchhhcccCCCCCEEECC-CCcccccChhHhcCcccCCEEECCCCccCCc--ChhHhcCcccCCEEEC
Confidence 34555555444432 24445555555555 4555555444555555555555555554332 1123444555555544
Q ss_pred ce
Q 035500 206 QM 207 (606)
Q Consensus 206 ~~ 207 (606)
..
T Consensus 355 s~ 356 (455)
T 3v47_A 355 SY 356 (455)
T ss_dssp CS
T ss_pred CC
Confidence 33
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.2e-05 Score=88.12 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=18.6
Q ss_pred Ccccchh-hhcccc-hhhhhccCCCCCCCcceecc
Q 035500 250 DEVELPK-YLRTMN-LMELSSCLSPNLNGHAEMLD 282 (606)
Q Consensus 250 ~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~~~~ 282 (606)
.++|.+. ++.+++ .+..|+.|++.+|++-.|.+
T Consensus 434 ~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~ 468 (549)
T 2z81_A 434 EVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD 468 (549)
T ss_dssp SEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC
T ss_pred eEEECCCCChhhhcccCChhcEEECCCCccCcCCC
Confidence 3444444 444333 45677777777777664443
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=8.5e-06 Score=95.17 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=42.1
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+.|+|+.|.+..+. .++.+++|++|+|. .|.|+.+..+.|..+|+|+.|.+.+|++..+ ...++..+++|++|.+
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLA-YNKINKIADEAFYGLDNLQVLNLSYNLLGEL--YSSNFYGLPKVAYIDL 345 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEE-SCCCCEECTTTTTTCSSCCEEEEESCCCSCC--CSCSCSSCTTCCEEEC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECC-CCcCCCCChHHhcCCCCCCEEECCCCCCCcc--CHHHhcCCCCCCEEEC
Confidence 44555555555542 34555666666666 5556666555566666666666666655433 1124445555555554
Q ss_pred ce
Q 035500 206 QM 207 (606)
Q Consensus 206 ~~ 207 (606)
+.
T Consensus 346 ~~ 347 (844)
T 3j0a_A 346 QK 347 (844)
T ss_dssp CS
T ss_pred CC
Confidence 44
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=97.89 E-value=1.1e-05 Score=86.26 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=87.4
Q ss_pred ccceeeeccCCCcccchhHHHHHHHHh---hccceEEEccCccccchHHHhhcc---CCCceeEEEccccchhccc----
Q 035500 72 DIEAVDILSKRPCFLKEEYIMSLMHAI---DQKLRVVDLSNITLRNDNLLDLCQ---VGSSCHVLILRATNIRKLN---- 141 (606)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~---- 141 (606)
.++.+|+-+ +.+.+.-+..+..++ ..+|+.++|+++.++...+..+.. .--.=+.|+|+.|+|....
T Consensus 171 ~L~~L~L~~---n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 247 (461)
T 1z7x_W 171 DFKELTVSN---NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247 (461)
T ss_dssp TCCEEECCS---SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred CCCEEECcC---CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH
Confidence 566667633 446555555555544 458999999999888765444433 2344467999999887643
Q ss_pred ---cccccccccEEecccCCCccc-----ccccccccCccccEEEcccccccchhhhhHHhhc-----CCchhhhhhcee
Q 035500 142 ---MVGRFMHLNTLSLDFCSSLAS-----LHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISK-----LPYLMELRFQMC 208 (606)
Q Consensus 142 ---~~~~~~~l~tl~l~~~~~~~~-----~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~-----~~~l~~l~~~~~ 208 (606)
++..+++|++|+|. .|.|+. +.+ .+..+|+|+.|.+.+|++...- ..++.+ .++|++|.+..|
T Consensus 248 ~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIW-ECGITAKGCGDLCR-VLRAKESLKELSLAGNELGDEG--ARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHTSTTCCCCEEECT-TSCCCHHHHHHHHH-HHHHCTTCCEEECTTCCCHHHH--HHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHhcCCCCceEEECc-CCCCCHHHHHHHHH-HHhhCCCcceEECCCCCCchHH--HHHHHHHhccCCccceeeEcCCC
Confidence 22357899999999 668888 443 3667899999999999886431 122222 268888887765
Q ss_pred c
Q 035500 209 L 209 (606)
Q Consensus 209 ~ 209 (606)
.
T Consensus 324 ~ 324 (461)
T 1z7x_W 324 S 324 (461)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.6e-05 Score=90.11 Aligned_cols=77 Identities=22% Similarity=0.156 Sum_probs=45.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|++++|++|.+.. +...=..=+.|+|++|+|..+.. .+.+|.+|+|. +|.|+.++.. +|+|+.|.+
T Consensus 81 ~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~-~N~l~~lp~~----l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQLTS-----LPVLPPGLLELSIFSNPLTHLPA--LPSGLCKLWIF-GNQLTSLPVL----PPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCSC-----CCCCCTTCCEEEECSCCCCCCCC--CCTTCCEEECC-SSCCSCCCCC----CTTCCEEEC
T ss_pred CCCCEEEcCCCcCCc-----CCCCCCCCCEEECcCCcCCCCCC--CCCCcCEEECC-CCCCCcCCCC----CCCCCEEEC
Confidence 567777777765432 11122234556777776666554 46666667666 5666666542 366777777
Q ss_pred ccccccchh
Q 035500 180 CETRIVNLW 188 (606)
Q Consensus 180 ~~~~~~~l~ 188 (606)
.+|++..+-
T Consensus 149 s~N~l~~l~ 157 (622)
T 3g06_A 149 SDNQLASLP 157 (622)
T ss_dssp CSSCCSCCC
T ss_pred cCCcCCCcC
Confidence 666666553
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00018 Score=74.40 Aligned_cols=161 Identities=6% Similarity=-0.060 Sum_probs=99.9
Q ss_pred ceeEEEEcCCCCCEEEEEeC-----CCcEEEEECCCCceEEEEecc----CCCCCEEEEEEeeCCCCEEEEEE---CCCe
Q 035500 439 RPRQFEYNPSNPSLMAFGTL-----DGEVIVINHENGNVACYIPSI----GGTNSVLGLCWLKKYPSKLVAGS---DSGC 506 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~-----DGtVrIWDi~tg~~v~~~~~~----gH~~~V~~L~fsp~~~~~LaSgS---~Dgt 506 (606)
.+..++++| ++++.++-.. ++.|.+||..+++.+..+.+. .+...+.++++++.++..+++.+ .++.
T Consensus 68 ~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~ 146 (343)
T 2qe8_A 68 TVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA 146 (343)
T ss_dssp CEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred EeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence 378899999 7777666544 688999999999877666542 22345689999975545556666 7889
Q ss_pred EEEEeCCCCCCCcccccC-----C-cceEEeec---------------CCCeEEEEEccCCCEEEEEeCCC-cEEEEECC
Q 035500 507 VRLFDLNHIPPKVADARG-----N-SSVATYYD---------------FEQLTSVHVNSTDDQFLASGYSK-NVALYDIN 564 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~-----~-~~i~t~~~---------------~~~V~sV~~sp~g~~LaSgs~Dg-~I~IWDlr 564 (606)
|.+||..++.... .... . .......+ ...+..|+|+|+++.++.+..++ .+..+|..
T Consensus 147 i~v~d~~~g~~~r-~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~ 225 (343)
T 2qe8_A 147 LIRVDLQTGLAAR-VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSA 225 (343)
T ss_dssp EEEEETTTCCEEE-ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred EEEEECCCCCEEE-EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence 9999987642110 0000 0 00000000 12368999999999888777665 44444432
Q ss_pred ---CCc-----e---eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 565 ---TEK-----P---LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 565 ---t~k-----~---v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+. . +... ++......++++++|. ++++...++.|.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~--g~~g~pdgia~d~~G~-l~va~~~~~~V~~ 273 (343)
T 2qe8_A 226 DLSNLQLTDAELGSKIERY--SEKPICDGISIDKDHN-IYVGDLAHSAIGV 273 (343)
T ss_dssp HHTCTTCCHHHHHTTCEEE--EECCSCSCEEECTTCC-EEEEEGGGTEEEE
T ss_pred HhcCCCCChhhhhcceEec--ccCCCCceEEECCCCC-EEEEccCCCeEEE
Confidence 111 0 1111 2344566789999875 7778777777664
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.88 E-value=8.6e-06 Score=95.78 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=70.5
Q ss_pred ccceEEEccCcc-ccc----hHHHhhc---cCCCceeEEEccccchhcccc---ccccccccEEecccCCCccccccccc
Q 035500 100 QKLRVVDLSNIT-LRN----DNLLDLC---QVGSSCHVLILRATNIRKLNM---VGRFMHLNTLSLDFCSSLASLHEDCF 168 (606)
Q Consensus 100 ~~~~~~~l~~~~-~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~l~~---~~~~~~l~tl~l~~~~~~~~~~~~~~ 168 (606)
.+|+.++|++|. +.. +.+.+|. ..-.+=+.|+|++|++..+.. ++.+++|++|.|. .|.|+.|+ .|
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls-~N~l~~lp--~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV-HNKVRHLE--AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECT-TSCCCBCC--CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECC-CCCcccch--hh
Confidence 367777777775 433 2233332 222245678888888887765 6778888888888 77788777 57
Q ss_pred ccCccccEEEcccccccchhhhhHHhhcCCc-hhhhhhceec
Q 035500 169 SCMPYLMCLSMCETRIVNLWTTTAAISKLPY-LMELRFQMCL 209 (606)
Q Consensus 169 ~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~-l~~l~~~~~~ 209 (606)
..||+|+.|.+.+|++..+. +.+.++++ |++|.+..|.
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp---~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIP---EDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CTTSEESEEECCSSCCSCCC---TTSCEECTTCCEEECCSSC
T ss_pred cCCCcceEEECcCCccccch---HHHhhccccCCEEECcCCC
Confidence 88888888888888877442 34667777 7777776653
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.6e-05 Score=90.07 Aligned_cols=68 Identities=21% Similarity=0.105 Sum_probs=32.2
Q ss_pred eEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 128 HVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
++|||++|+|..+.. .+.+|.+|+|. +|.|+.++. .+++|+.|.+.+|++..+-. .+++|++|.+..
T Consensus 84 ~~L~Ls~N~l~~lp~--~l~~L~~L~Ls-~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~ 150 (622)
T 3g06_A 84 RTLEVSGNQLTSLPV--LPPGLLELSIF-SNPLTHLPA----LPSGLCKLWIFGNQLTSLPV------LPPGLQELSVSD 150 (622)
T ss_dssp CEEEECSCCCSCCCC--CCTTCCEEEEC-SCCCCCCCC----CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCS
T ss_pred CEEEcCCCcCCcCCC--CCCCCCEEECc-CCcCCCCCC----CCCCcCEEECCCCCCCcCCC------CCCCCCEEECcC
Confidence 344555544444433 34445555554 444444433 34455555555554444321 135666666554
Q ss_pred e
Q 035500 208 C 208 (606)
Q Consensus 208 ~ 208 (606)
|
T Consensus 151 N 151 (622)
T 3g06_A 151 N 151 (622)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=97.85 E-value=1.3e-05 Score=82.25 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=67.0
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccc-cccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASL-HEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~-~~~~~~~~p~l~~l 177 (606)
.-++.+||+++.+..+++..+...++ +.|+|++|.+.... .+..+++|++|+|. .+.++.. -...|..+|+|+.|
T Consensus 47 ~~~~~l~l~~~~~~~~~~~~~~~~~l--~~L~l~~n~l~~~~~~~~~~~~L~~L~L~-~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPDVTGRLLSQGV--IAFRCPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TTSSEEECTTCBCCHHHHHHHHHTTC--SEEECTTCEECSCCCSCCCCBCCCEEECT-TCEECHHHHHHHHTTBCCCSEE
T ss_pred hhheeeccccccCCHHHHHhhhhccc--eEEEcCCccccccchhhccCCCCCEEEcc-CCCcCHHHHHHHHhhCCCCCEE
Confidence 34777788777777666666654443 45777777765543 34466777788887 4556542 22446777788888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+|++... ...++.++++|++|.+..|
T Consensus 124 ~L~~~~l~~~--~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 124 SLEGLRLSDP--IVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp ECTTCBCCHH--HHHHHTTCTTCSEEECTTC
T ss_pred eCcCcccCHH--HHHHHhcCCCCCEEECCCC
Confidence 8877766532 3356677777777776654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.2e-05 Score=82.44 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=76.1
Q ss_pred hccceEEEccCccccc--hHHHhhccCCCceeEEEccccchhccc---cccccccccEEecccCCCcccccccccccCcc
Q 035500 99 DQKLRVVDLSNITLRN--DNLLDLCQVGSSCHVLILRATNIRKLN---MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPY 173 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~ 173 (606)
-.+|+.++|+++.+.. .....++..--.=+.|+|++|+|.... .+..+.+|++|+|. .|.|+.+++..| |+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls-~N~l~~ip~~~~---~~ 275 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS-FTGLKQVPKGLP---AK 275 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT-TSCCSSCCSSCC---SE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC-CCccChhhhhcc---CC
Confidence 3678888888887763 344455544445677999999888844 44456889999999 888998887655 89
Q ss_pred ccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 174 LMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 174 l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
|+.|.+.+|++..+ .++.++++|++|.+.+
T Consensus 276 L~~L~Ls~N~l~~~----p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN----PSPDELPQVGNLSLKG 305 (312)
T ss_dssp EEEEECCSSCCCSC----CCTTTSCEEEEEECTT
T ss_pred ceEEECCCCCCCCC----hhHhhCCCCCEEeccC
Confidence 99999999988877 4477888888887654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00048 Score=71.08 Aligned_cols=146 Identities=12% Similarity=0.068 Sum_probs=96.0
Q ss_pred eeEEEEcCCCCCEEEEEe--CCCcEEEEECCCCceEEEEe-----ccCCCCCEEEEEEeeCCCCEEEEEEC-----CCeE
Q 035500 440 PRQFEYNPSNPSLMAFGT--LDGEVIVINHENGNVACYIP-----SIGGTNSVLGLCWLKKYPSKLVAGSD-----SGCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs--~DGtVrIWDi~tg~~v~~~~-----~~gH~~~V~~L~fsp~~~~~LaSgS~-----DgtI 507 (606)
+..++++| +++++++.. .+|.++||.+.+++.. .+. ..+|-..+.+++++++ +.++++-+. ++.|
T Consensus 19 p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 19 PGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp EEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTSCCEE
T ss_pred cceEEECC-CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeE
Confidence 77889999 888988864 2453556655455543 221 1235578999999984 455444433 5789
Q ss_pred EEEeCCCCCCCcccccCCcceEEeec-------CCCeEEEEEccCCC-EEEEEe---CCCcEEEEECCCCceeEEEcCCC
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYD-------FEQLTSVHVNSTDD-QFLASG---YSKNVALYDINTEKPLQLFTDMH 576 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~-------~~~V~sV~~sp~g~-~LaSgs---~Dg~I~IWDlrt~k~v~~l~~gH 576 (606)
.+||..++ ..+.++.. ...+..++++|++. .+++.+ .++.|.+||+.+++..+.+. +|
T Consensus 96 ~~~d~~tg----------~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~ 164 (343)
T 2qe8_A 96 VAWDTLNN----------QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GY 164 (343)
T ss_dssp EEEETTTT----------EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TC
T ss_pred EEEECCCC----------eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CC
Confidence 99999873 22333332 12368999998754 445555 67899999999887766554 22
Q ss_pred C-----------------------------CCeEEEEEeCCCCeEEEEEeCC
Q 035500 577 R-----------------------------EPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 577 ~-----------------------------~~I~sV~fsP~g~~LLaTgS~D 599 (606)
. ..++.++|+|++..++++....
T Consensus 165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp TTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred CcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence 1 2368899999998766655443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=3.6e-05 Score=86.94 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=70.4
Q ss_pred ccceEEEccCccccchHHHhhccCC---CceeEEEccccchhccc--cccccccccEEecccCCCcc-cccccccccCcc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVG---SSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLA-SLHEDCFSCMPY 173 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~-~~~~~~~~~~p~ 173 (606)
.+|+.++|+++.+....+.+....+ .+=+.|+|+.|++..+. .++.+.+|++|+|. .|.++ .++...|..+|+
T Consensus 353 ~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~~l~~ 431 (680)
T 1ziw_A 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG-LNEIGQELTGQEWRGLEN 431 (680)
T ss_dssp TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCEEECCSGGGTTCTT
T ss_pred cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC-CCcCccccCcccccCccc
Confidence 5788999888765433322222111 23466888888887763 45677788888888 66775 356667788888
Q ss_pred ccEEEcccccccchhhhhHHhhcCCchhhhhhceec
Q 035500 174 LMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 174 l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
|+.|.+.+|++..+ ...++..+|+|++|.+..|.
T Consensus 432 L~~L~Ls~n~l~~~--~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 432 IFEIYLSYNKYLQL--TRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp CCEEECCSCSEEEC--CTTTTTTCTTCCEEECTTSC
T ss_pred ccEEecCCCCccee--ChhhhhcCcccccchhcccc
Confidence 88888888877654 22455667777777776654
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=97.82 E-value=2.1e-05 Score=80.81 Aligned_cols=103 Identities=9% Similarity=0.164 Sum_probs=72.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhc-c-ccccccccccEEecccCCCcc-cccccccccCc-ccc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRK-L-NMVGRFMHLNTLSLDFCSSLA-SLHEDCFSCMP-YLM 175 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l-~~~~~~~~l~tl~l~~~~~~~-~~~~~~~~~~p-~l~ 175 (606)
.+|+.++|+++.+....-..+. .=-+=+.|+|++|+|.. + ..++.+++|++|+|+ .|.|+ .+++. |..++ +|+
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~-l~~l~~~L~ 177 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD-GNRISGAIPDS-YGSFSKLFT 177 (313)
T ss_dssp TTCSEEEEEEECCEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC-SSCCEEECCGG-GGCCCTTCC
T ss_pred CCCCEEECcCCeeCCcCCHHHh-CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc-CCcccCcCCHH-HhhhhhcCc
Confidence 6899999999877632222221 12345789999999983 3 357889999999999 88888 55554 55565 999
Q ss_pred EEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 176 CLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 176 ~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+.+|++... ...++.+++ |++|.+..+
T Consensus 178 ~L~L~~N~l~~~--~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 178 SMTISRNRLTGK--IPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEEEE--CCGGGGGCC-CSEEECCSS
T ss_pred EEECcCCeeecc--CChHHhCCc-ccEEECcCC
Confidence 999999998732 123455555 888876553
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0035 Score=61.72 Aligned_cols=151 Identities=6% Similarity=-0.003 Sum_probs=98.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|+|.++.+.++-..++.|.+++...+....... .......++++++.++..+++-...+.|.+++.....
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--- 112 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--- 112 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---
Confidence 66889999555555566668899999987655433222 2224688999998555556666677899999987521
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEe-C--CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASG-Y--SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs-~--Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
...... .......++++|++..++.+. . .+.|..+++.... ...+....-...+.++++|++.+++++
T Consensus 113 -------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~ 184 (267)
T 1npe_A 113 -------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWV 184 (267)
T ss_dssp -------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred -------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEE
Confidence 111122 224478999999765444443 3 4688888886433 333321223567899999998888888
Q ss_pred EeCCCeEE
Q 035500 596 LHLTTMSR 603 (606)
Q Consensus 596 gS~DgtIR 603 (606)
....+.|.
T Consensus 185 d~~~~~I~ 192 (267)
T 1npe_A 185 DAGTHRAE 192 (267)
T ss_dssp ETTTTEEE
T ss_pred ECCCCEEE
Confidence 87777665
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0014 Score=69.12 Aligned_cols=153 Identities=12% Similarity=-0.020 Sum_probs=98.3
Q ss_pred eeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCceEEE-EeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL--DGEVIVINHENGNVACY-IPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~--DGtVrIWDi~tg~~v~~-~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
+..++|+| +++++++++. +++|.++| .+++.+.. +...+ ++.+.|.....+++.+.||.+.+||. .++
T Consensus 127 p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 127 SWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT------CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred ccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc------eEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence 55788999 9999998874 58899999 99988776 54321 13444545566777778888888887 432
Q ss_pred CCcccc-----cCCcc----------------------eE-------------Eeec-----------CCCeEEEEEccC
Q 035500 517 PKVADA-----RGNSS----------------------VA-------------TYYD-----------FEQLTSVHVNST 545 (606)
Q Consensus 517 ~~~~~l-----~~~~~----------------------i~-------------t~~~-----------~~~V~sV~~sp~ 545 (606)
...... .+..+ +. .+.. ......+.++|+
T Consensus 198 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d 277 (373)
T 2mad_H 198 AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS 277 (373)
T ss_pred EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC
Confidence 210000 00000 00 1100 011233678888
Q ss_pred CCEEEEEeC----------CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe-CCCeEE
Q 035500 546 DDQFLASGY----------SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH-LTTMSR 603 (606)
Q Consensus 546 g~~LaSgs~----------Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS-~DgtIR 603 (606)
++.++.+.. ++.|.++|..+++.+..++.+ ...+.++|+|+|++++.++. .++.|.
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ 344 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLH 344 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEE
Confidence 876666542 357999999999999888743 46889999999995455555 466654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.76 E-value=4.6e-06 Score=87.85 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=68.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
++..+++|+.||.|+.||..+|+....+.. +.+.+..+.. ++..+++++.||.|..||..+++. +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~----------~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEG----------L 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC------CCEEECTTTCCEEEC-----CC----------S
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceEc-CCCEEEEeCCCCEEEEEECCCCce----------e
Confidence 567999999999999999999999987764 3444444444 445677788999999999977432 1
Q ss_pred EEeecCC--CeE-EEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 529 ATYYDFE--QLT-SVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 529 ~t~~~~~--~V~-sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+..+. .+. +..+ ..+..+++++.|+.++.||.++|+.+..+. .+. ...++|.+. .+++++.|+.+++
T Consensus 73 w~~~~~~~~~~~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~-~~~----~~~~~p~~~-~v~~~~~dg~v~a 144 (369)
T 2hz6_A 73 TKLPFTIPELVQASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLS-SAF----ADSLSPSTS-LLYLGRTEYTITM 144 (369)
T ss_dssp EECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEEC
T ss_pred eeeeccCccccccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEec-CCC----cccccccCC-EEEEEecCCEEEE
Confidence 1222110 010 0000 135577788889999999999999987776 332 234567666 4667777777764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00035 Score=74.62 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=83.6
Q ss_pred EcCCCCCEEEEEeC-----CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------CCCeEEE
Q 035500 445 YNPSNPSLMAFGTL-----DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----------DSGCVRL 509 (606)
Q Consensus 445 fsP~dg~~LaSGs~-----DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----------~DgtIkl 509 (606)
..| +++.+..... +++|.+.|..+++.+..+.. |. .+ .++++|+ +.+++.++ .++.|.+
T Consensus 40 ~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v-G~-~P--~va~spD-G~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 40 PAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GF-LP--NPVVADD-GSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CS-SC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred cCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC-CC-CC--cEEECCC-CCEEEEEcccccccccCCCCCEEEE
Confidence 346 7777777765 68999999999999988763 32 33 3999995 55554443 4678999
Q ss_pred EeCCCCCCCcccccCCcceEEeecC--------CCeEEEEEccCCCEEEEEeC--CCcEEEEECCCCceeEEEcC
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDF--------EQLTSVHVNSTDDQFLASGY--SKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~--------~~V~sV~~sp~g~~LaSgs~--Dg~I~IWDlrt~k~v~~l~~ 574 (606)
||..+. ..+.++.-. ..-..+.++|+|++++.+.. ++.|.++|+.+++.+.+++.
T Consensus 114 iD~~t~----------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 114 FDPVTL----------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp ECTTTC----------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred EECCCC----------eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence 999884 344444311 13457899999998887763 68999999999999888863
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00068 Score=68.44 Aligned_cols=141 Identities=9% Similarity=-0.005 Sum_probs=94.2
Q ss_pred eeEEEEcCCCCC-EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPS-LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~-~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+....|+| +++ +++++..++.|..|+. ++.. ..+. .+...+.+++|++ ++.++++...++.|..||... ..
T Consensus 47 ~egp~~~~-~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~--~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~g-~~- 118 (305)
T 3dr2_A 47 SEGPAWWE-AQRTLVWSDLVGRRVLGWRE-DGTV-DVLL--DATAFTNGNAVDA-QQRLVHCEHGRRAITRSDADG-QA- 118 (305)
T ss_dssp EEEEEEEG-GGTEEEEEETTTTEEEEEET-TSCE-EEEE--ESCSCEEEEEECT-TSCEEEEETTTTEEEEECTTS-CE-
T ss_pred ccCCeEeC-CCCEEEEEECCCCEEEEEeC-CCCE-EEEe--CCCCccceeeECC-CCCEEEEECCCCEEEEECCCC-CE-
Confidence 45667999 777 7778888999999998 4543 2332 3456789999998 556555555568899998753 11
Q ss_pred cccccCCcceE-Eeec--CCCeEEEEEccCCCEEEE----EeC-------------CCcEEEEECCCCceeEEEcCCCCC
Q 035500 519 VADARGNSSVA-TYYD--FEQLTSVHVNSTDDQFLA----SGY-------------SKNVALYDINTEKPLQLFTDMHRE 578 (606)
Q Consensus 519 ~~~l~~~~~i~-t~~~--~~~V~sV~~sp~g~~LaS----gs~-------------Dg~I~IWDlrt~k~v~~l~~gH~~ 578 (606)
..+. .... ...++++++.|+|.+++| |.. .+.|..||..+++..... +..
T Consensus 119 -------~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~ 188 (305)
T 3dr2_A 119 -------HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLD 188 (305)
T ss_dssp -------EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EES
T ss_pred -------EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCC
Confidence 0111 1111 234678999999998886 332 256888888777654332 234
Q ss_pred CeEEEEEeCCCCeEEEEEeC
Q 035500 579 PINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+.++|+|++..++++.+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~ 208 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTP 208 (305)
T ss_dssp SEEEEEECTTSSEEEEEECC
T ss_pred CCcceEEcCCCCEEEEEecC
Confidence 56889999999977666554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=3e-05 Score=86.25 Aligned_cols=105 Identities=23% Similarity=0.180 Sum_probs=66.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+||+++|+++.+..--- .-+..=-.=++|||++|.|..+. .++.+.+|++|+|. .|+|+.+..+.|..+++|+.|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT-GNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC-CCcccccChhhcCCcccCCEE
Confidence 567777777765432110 01111123356777777777763 46677777788887 667777766777777888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+|++..+... ++.+|++|++|.+..|
T Consensus 110 ~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 110 VAVETKLASLESF--PIGQLITLKKLNVAHN 138 (606)
T ss_dssp ECTTSCCCCSSSS--CCTTCTTCCEEECCSS
T ss_pred EccCCcccccccc--ccCCCCCCCEEeCCCC
Confidence 8877777665321 3667777777775553
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0013 Score=69.42 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=88.0
Q ss_pred CCCEEEEEeC--CC---cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------CCCeEEEEeCC
Q 035500 449 NPSLMAFGTL--DG---EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----------DSGCVRLFDLN 513 (606)
Q Consensus 449 dg~~LaSGs~--DG---tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----------~DgtIklWDl~ 513 (606)
++.++.+... .. +|.+||..+++.+..++. + ..+ .++++| +++.++.+. .+++|.+||..
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~-g-~~p--~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-G-FLP--NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC-C-CCC--CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 6666666543 22 899999999998876653 2 233 999999 556666664 47889999998
Q ss_pred CCCCCcccccCCcceEEeec--------CCCeEEEEEccCCCEEEEEeC--CCcEEEEECCCCceeEE-EcCCCCCCeEE
Q 035500 514 HIPPKVADARGNSSVATYYD--------FEQLTSVHVNSTDDQFLASGY--SKNVALYDINTEKPLQL-FTDMHREPINV 582 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~--------~~~V~sV~~sp~g~~LaSgs~--Dg~I~IWDlrt~k~v~~-l~~gH~~~I~s 582 (606)
+.+ .+..... ...-..+.|+|+|++++.+.. ++.|.++| .+++.+.. ++. ...
T Consensus 106 t~~----------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~~--- 169 (373)
T 2mad_H 106 TFL----------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PTC--- 169 (373)
T ss_pred CCc----------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--Cce---
Confidence 632 2222221 122457899999998888764 58899999 99998877 662 121
Q ss_pred EEEeCCCCeEEEEEeCCCe
Q 035500 583 AKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~Dgt 601 (606)
+.+.|.++..+++.+.|+.
T Consensus 170 ~~~~~~~~~~~~~~~~dg~ 188 (373)
T 2mad_H 170 YHIHPGAPSTFYLLCAQGG 188 (373)
T ss_pred EEEEeCCCceEEEEcCCCC
Confidence 3445555545555555554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=97.73 E-value=4.2e-05 Score=71.44 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=69.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+.. ...+.+..-..=+.|+|++|+|..+.. ++.+.+|++|.|. .|.|+.++.+.|..||+|+.|
T Consensus 52 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD-TNQLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCSCCCTTTTTTCTTCCEE
T ss_pred ccccEEECCCCcceE-eChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc-CCcceEeCHHHhcCCcccCEE
Confidence 589999999987652 111222222345789999999998874 6789999999999 889999999999999999999
Q ss_pred Ecccccccch
Q 035500 178 SMCETRIVNL 187 (606)
Q Consensus 178 ~~~~~~~~~l 187 (606)
.|.+|.+.--
T Consensus 130 ~l~~N~~~~~ 139 (177)
T 2o6r_A 130 WLHTNPWDCS 139 (177)
T ss_dssp ECCSSCBCCC
T ss_pred EecCCCeecc
Confidence 9999987743
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=97.73 E-value=3.6e-05 Score=79.04 Aligned_cols=101 Identities=11% Similarity=0.175 Sum_probs=74.3
Q ss_pred ccceEEEccCccccch---HHHhhccCCCceeEEEccccchh-ccc-cccccc-cccEEecccCCCcccccccccccCcc
Q 035500 100 QKLRVVDLSNITLRND---NLLDLCQVGSSCHVLILRATNIR-KLN-MVGRFM-HLNTLSLDFCSSLASLHEDCFSCMPY 173 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~l~-~~~~~~-~l~tl~l~~~~~~~~~~~~~~~~~p~ 173 (606)
.+|+.++|+++.+... .+..| -+=++|+|+.|+|. .+. .++.+. +|++|.|. .|.++......|..++
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l----~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~-~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSL----PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS-RNRLTGKIPPTFANLN- 198 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGC----TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC-SSEEEEECCGGGGGCC-
T ss_pred CCCCEEeCCCCccCCcCChHHhcC----CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc-CCeeeccCChHHhCCc-
Confidence 6899999999877632 23332 34567999999887 443 566776 89999999 8888866666677777
Q ss_pred ccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 174 LMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 174 l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|+.|.+.+|++... ....+.++++|++|.+..+
T Consensus 199 L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 199 LAFVDLSRNMLEGD--ASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp CSEEECCSSEEEEC--CGGGCCTTSCCSEEECCSS
T ss_pred ccEEECcCCcccCc--CCHHHhcCCCCCEEECCCC
Confidence 99999999888754 2355778888888886664
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=4.7e-05 Score=87.95 Aligned_cols=77 Identities=17% Similarity=0.114 Sum_probs=47.3
Q ss_pred eEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 128 HVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+.|+|+.|++....-++.+++|++|+|. .|.++..... |..+|+|+.|.+.+|++... ...++.++++|++|.+..
T Consensus 181 ~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 181 KHLAISGNKISGDVDVSRCVNLEFLDVS-SNNFSTGIPF-LGDCSALQHLDISGNKLSGD--FSRAISTCTELKLLNISS 256 (768)
T ss_dssp CEEECCSSEEESCCBCTTCTTCCEEECC-SSCCCSCCCB-CTTCCSCCEEECCSSCCCSC--HHHHTTTCSSCCEEECCS
T ss_pred CEEECCCCcccccCCcccCCcCCEEECc-CCcCCCCCcc-cccCCCCCEEECcCCcCCCc--ccHHHhcCCCCCEEECCC
Confidence 4455555555554445566777777777 5555554433 67777777777777766532 234566777777777665
Q ss_pred e
Q 035500 208 C 208 (606)
Q Consensus 208 ~ 208 (606)
|
T Consensus 257 n 257 (768)
T 3rgz_A 257 N 257 (768)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=2.6e-05 Score=87.43 Aligned_cols=104 Identities=21% Similarity=0.232 Sum_probs=82.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcc-ccccccccccEEecccCCCcccccccccccCccccEEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKL-NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
..|++++|++|.+.. +.+++ .=..=+.|+|++|+|..+ ..++.+.+|++|+|+ +|.|+.++ -|..||+|+.|.
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp--~l~~l~~L~~L~ 514 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCHLE-QLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS-DNALENVD--GVANLPRLQELL 514 (567)
T ss_dssp TTCSEEECTTSCCSS--CCCGG-GGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC-SSCCCCCG--GGTTCSSCCEEE
T ss_pred cCceEEEecCCCCCC--CcCcc-ccccCcEeecCcccccccchhhhcCCCCCEEECC-CCCCCCCc--ccCCCCCCcEEE
Confidence 369999999986643 22211 112347799999999988 478899999999999 89999997 499999999999
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhceecc
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQMCLC 210 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~ 210 (606)
|.+|++..+- ....+.+|++|+.|.+.++.-
T Consensus 515 Ls~N~l~~~~-~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 515 LCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CCSSCCCSSS-TTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCCCCC-CcHHHhcCCCCCEEEecCCcC
Confidence 9999998761 135678899999999887654
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=2.9e-05 Score=85.30 Aligned_cols=105 Identities=27% Similarity=0.219 Sum_probs=70.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..+|.+||+++.+..-.-. -+..=-+=++|||++|+|..+. .++.+.+|++|+|. .|.|+.++.+.|..+++|+.|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc-CCcCCccCHhhhcCccccccc
Confidence 3577788877654321100 1111123467888888887775 46778888888888 777888887788888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+|++..+-.. ++.+|++|++|.+..+
T Consensus 106 ~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n 134 (570)
T 2z63_A 106 VAVETNLASLENF--PIGHLKTLKELNVAHN 134 (570)
T ss_dssp ECTTSCCCCSTTC--SCTTCTTCCEEECCSS
T ss_pred cccccccccCCCc--cccccccccEEecCCC
Confidence 8888887776221 2677788888776553
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=2e-05 Score=87.27 Aligned_cols=105 Identities=16% Similarity=0.240 Sum_probs=71.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|++++|+++.+...+..+.++.--+=++|||++|+|..+. .++.+++|++|+|. +|+|++++...|..+|+|+.|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls-~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS-HNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCBCCCGGGTTCTTCCEE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC-CCcCCCCChhHHhCCCCCCEE
Confidence 466777777765544444444444445577888888887774 46677888888888 778888877778888888888
Q ss_pred EcccccccchhhhhHHhhcC-Cchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKL-PYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~-~~l~~l~~~~ 207 (606)
.+.+|++..+- -.++..+ ++|+.|.+..
T Consensus 548 ~Ls~N~l~~~~--~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 548 DYSLNHIMTSK--KQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp ECTTSCCCBCC--SSCTTCCCTTCCEEECTT
T ss_pred ECCCCcCCCCC--HHHHHhhhCcCCEEEeeC
Confidence 88888776552 2345566 4677776554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.8e-05 Score=86.81 Aligned_cols=105 Identities=24% Similarity=0.272 Sum_probs=54.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+||++||+++.+..-.-..+ ..=-.=++|+|++|+|..+. .++.+.+|++|+|. .|.|+.+....|..|++|+.|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS-DNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTT-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhh-hcCCcccEEECCCCCcCccChhhccccccCCEEECC-CCccCccCHHHhccCCCCcEE
Confidence 456666666654432110111 11112345666666666554 35556666666666 556666665556666666666
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+.+|++..+- ....+.++++|++|.+..
T Consensus 104 ~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 104 NLMGNPYQTLG-VTSLFPNLTNLQTLRIGN 132 (549)
T ss_dssp ECTTCCCSSSC-SSCSCTTCTTCCEEEEEE
T ss_pred ECCCCcccccc-hhhhhhccCCccEEECCC
Confidence 66666655331 112345556666665444
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=97.70 E-value=6.5e-05 Score=81.55 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=47.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|++++|+++.+.. +-++ ..=-+=+.|+|++|++..+... +.+|++|.|. .|.++.+++ |..||+|+.|.+
T Consensus 131 ~~L~~L~L~~n~l~~--lp~~-~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~-~n~l~~l~~--~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LPEL-QNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAG-NNQLEELPE--LQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS--CCCC-TTCTTCCEEECCSSCCSCCCCC--CTTCCEEECC-SSCCSSCCC--CTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC--Cccc-CCCCCCCEEECCCCcCcccCCC--cccccEEECc-CCcCCcCcc--ccCCCCCCEEEC
Confidence 578888888766543 2221 1112345677777766654422 3467777776 556666653 666666666666
Q ss_pred ccccccch
Q 035500 180 CETRIVNL 187 (606)
Q Consensus 180 ~~~~~~~l 187 (606)
.+|++..+
T Consensus 203 ~~N~l~~l 210 (454)
T 1jl5_A 203 DNNSLKKL 210 (454)
T ss_dssp CSSCCSSC
T ss_pred CCCcCCcC
Confidence 66666543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.70 E-value=3.1e-05 Score=86.86 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=63.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|++|.+.. +- ..-..-+.|+|++|+|..+..++. +|.+|+|+ +|.|+.|+. .+|+|+.|.|
T Consensus 80 ~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls-~N~l~~lp~----~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALIS--LP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVD-NNQLTMLPE----LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECC-SSCCSCCCC----CCTTCCEEEC
T ss_pred CCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECC-CCcCCCCCC----cCccccEEeC
Confidence 568888888876652 21 112345678888888877655333 88888888 778888776 5788888888
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+ .. .+++|++|.+.++
T Consensus 148 s~N~l~~l----p~--~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 148 DNNQLTML----PE--LPTSLEVLSVRNN 170 (571)
T ss_dssp CSSCCSCC----CC--CCTTCCEEECCSS
T ss_pred CCCccCcC----CC--cCCCcCEEECCCC
Confidence 88887765 22 5677887776654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=97.69 E-value=2.9e-05 Score=85.11 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=50.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|++|.+.......++..=..=+.|+|++|.|..+.....+++|.+|+|+ +|.|+.++.+ |..+|+|+.|.|
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~-~~~l~~L~~L~L 221 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS-SNKLAFMGPE-FQSAAGVTWISL 221 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC-SSCCCEECGG-GGGGTTCSEEEC
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECC-CCCCCCCCHh-HcCCCCccEEEe
Confidence 34555555555444322222222112334455555555555444445555555555 5555555544 555555555555
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+-. .+..+++|+.|.+..
T Consensus 222 s~N~l~~lp~---~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 222 RNNKLVLIEK---ALRFSQNLEHFDLRG 246 (487)
T ss_dssp TTSCCCEECT---TCCCCTTCCEEECTT
T ss_pred cCCcCcccch---hhccCCCCCEEEcCC
Confidence 5555554321 234445555555443
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.67 E-value=5.9e-05 Score=88.68 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=65.8
Q ss_pred cceEEEccCccccchHHHhhc-----cCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCc-
Q 035500 101 KLRVVDLSNITLRNDNLLDLC-----QVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMP- 172 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p- 172 (606)
+|+.++|++|.+... +..+. ..+.+=+.|+|+.|+|..+.. +..+++|++|+|. +|.|+.++...|...+
T Consensus 645 ~L~~L~Ls~N~l~g~-ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls-~N~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSE-GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS-NNLMTSIPENSLKPKDG 722 (876)
T ss_dssp CEEEEECCSSCTTTT-SSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECC-SCCCSCCCTTSSSCTTS
T ss_pred CCCEEECcCCcCCCc-cccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECC-CCcCCccChHHhccccc
Confidence 488888888766431 11111 122345678888887776652 2356778888887 6777777777776543
Q ss_pred ------cccEEEcccccccchhhhhHHhh--cCCchhhhhhcee
Q 035500 173 ------YLMCLSMCETRIVNLWTTTAAIS--KLPYLMELRFQMC 208 (606)
Q Consensus 173 ------~l~~l~~~~~~~~~l~~~~~~l~--~~~~l~~l~~~~~ 208 (606)
+|+.|.|.+|++..+- ..+. .+|+|++|.+..+
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~~lp---~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLTSLS---DDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp CCTTGGGCCEEECCSSCCCCCC---GGGSTTTCTTCCEEECCSS
T ss_pred cccccCCccEEECCCCCCccch---HHhhhccCCCcCEEEeCCC
Confidence 7888888877777552 2343 6777777776664
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=97.64 E-value=6e-05 Score=85.25 Aligned_cols=103 Identities=7% Similarity=0.168 Sum_probs=59.0
Q ss_pred ceEEEccCccccchHHHhhc-cCCC-ceeEEEccccchhcc--cccc-------ccccccEEecccCCCccccccccccc
Q 035500 102 LRVVDLSNITLRNDNLLDLC-QVGS-SCHVLILRATNIRKL--NMVG-------RFMHLNTLSLDFCSSLASLHEDCFSC 170 (606)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l--~~~~-------~~~~l~tl~l~~~~~~~~~~~~~~~~ 170 (606)
|+.++|+++.+. . +-+.. ...+ +=+.|+|++|+|... ..++ .+.+|++|.|. .|.|+.++...|..
T Consensus 379 L~~L~Ls~N~l~-~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls-~N~l~~lp~~~~~~ 455 (636)
T 4eco_A 379 VENLSFAHNKLK-Y-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS-NNQISKFPKELFST 455 (636)
T ss_dssp CCEEECCSSCCS-S-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC-SSCCCSCCTHHHHT
T ss_pred CcEEEccCCcCc-c-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc-CCccCcCCHHHHcc
Confidence 777777776665 2 22211 1111 346677777777653 2233 45577777777 66777777776777
Q ss_pred CccccEEEcccccccchhhhhHH-----hhcCCchhhhhhce
Q 035500 171 MPYLMCLSMCETRIVNLWTTTAA-----ISKLPYLMELRFQM 207 (606)
Q Consensus 171 ~p~l~~l~~~~~~~~~l~~~~~~-----l~~~~~l~~l~~~~ 207 (606)
||+|+.|.|.+|++..+-..+-. +.++++|++|.+..
T Consensus 456 l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC
Confidence 77777777777777654322211 12233666666544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=97.63 E-value=8e-05 Score=76.23 Aligned_cols=108 Identities=20% Similarity=0.238 Sum_probs=50.7
Q ss_pred hccceEEEccCc-cccchHHHhhccCCCceeEEEcccc-chhcc---ccccccc-cccEEecccCC-Ccc--cccccccc
Q 035500 99 DQKLRVVDLSNI-TLRNDNLLDLCQVGSSCHVLILRAT-NIRKL---NMVGRFM-HLNTLSLDFCS-SLA--SLHEDCFS 169 (606)
Q Consensus 99 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l---~~~~~~~-~l~tl~l~~~~-~~~--~~~~~~~~ 169 (606)
..+|+.++|+++ .++...+..+...=.+=+.|+|++| .+... ..++.++ +|++|.|..|. .++ .++ ..+.
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~ 219 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVR 219 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHh
Confidence 355666666665 3443333333332233445666655 54431 2344555 56666665332 232 222 2344
Q ss_pred cCccccEEEccccc-ccchhhhhHHhhcCCchhhhhhceec
Q 035500 170 CMPYLMCLSMCETR-IVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 170 ~~p~l~~l~~~~~~-~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
.+|+|+.|.+.+|+ +.+ ....++.++++|++|.+..|.
T Consensus 220 ~~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HCTTCSEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTCT
T ss_pred hCCCCCEEeCCCCCcCCH--HHHHHHhCCCCCCEeeCCCCC
Confidence 55566666665555 332 122445555555555555543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=4.5e-05 Score=88.08 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=52.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchh-ccc-ccc-ccccccEEecccCCCcccccccccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIR-KLN-MVG-RFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~-~~~-~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
.+|++++|+++.+.... -...- -+=+.|+|+.|++. .+. .++ .+++|++|.|. .|.++.....-|..+|+|+.
T Consensus 247 ~~L~~L~Ls~n~l~~~~-~~~~l--~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPI-PPLPL--KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS-GNHFYGAVPPFFGSCSLLES 322 (768)
T ss_dssp SSCCEEECCSSCCEESC-CCCCC--TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC-SSEEEECCCGGGGGCTTCCE
T ss_pred CCCCEEECCCCcccCcc-Ccccc--CCCCEEECcCCccCCccCHHHHhhcCcCCEEECc-CCcCCCccchHHhcCCCccE
Confidence 57888888887653211 00001 12245666666654 221 122 23566666666 55555544455666666666
Q ss_pred EEccccccc-chhhhhHHhhcCCchhhhhhcee
Q 035500 177 LSMCETRIV-NLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 177 l~~~~~~~~-~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|.+.+|++. .+ ...++.++++|++|.+..|
T Consensus 323 L~L~~n~l~~~i--p~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 323 LALSSNNFSGEL--PMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEEEC--CHHHHTTCTTCCEEECCSS
T ss_pred EECCCCcccCcC--CHHHHhcCCCCCEEeCcCC
Confidence 666666554 22 1123555666666655543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.6e-05 Score=82.29 Aligned_cols=104 Identities=22% Similarity=0.205 Sum_probs=55.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+....-.. ...=-+=+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.+....|..||+|+.|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCEECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhh-cccCCCCCEEECCCCcccccChhHhcCcccCCEEECC-CCccCCcChhHhcCcccCCEE
Confidence 56777777766554221111 111112345666666666553 44555666666666 556666655556666666666
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+.+|++..+- ..++..+++|++|.+..
T Consensus 353 ~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 353 DLSYNHIRALG--DQSFLGLPNLKELALDT 380 (455)
T ss_dssp ECCSSCCCEEC--TTTTTTCTTCCEEECCS
T ss_pred ECCCCcccccC--hhhccccccccEEECCC
Confidence 66666654431 13445555666665554
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.62 E-value=7.5e-05 Score=70.24 Aligned_cols=92 Identities=11% Similarity=0.104 Sum_probs=71.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..|++++|++|.+..-. .+.+..=-.=+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.++.+.|..||+|+.|
T Consensus 33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~-~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN-DNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC-CCccceeCHHHhccccCCCEE
Confidence 57899999998765321 1112222345779999999999874 6789999999999 899999999999999999999
Q ss_pred EcccccccchhhhhHH
Q 035500 178 SMCETRIVNLWTTTAA 193 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~ 193 (606)
.|.+|.+.-....+..
T Consensus 111 ~L~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 111 YLYNNPWDCECRDIMY 126 (174)
T ss_dssp ECCSSCBCTTBGGGHH
T ss_pred EeCCCCcccccccHHH
Confidence 9999987754333333
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00052 Score=69.30 Aligned_cols=146 Identities=9% Similarity=0.033 Sum_probs=96.1
Q ss_pred ceeEEEEcCCCCCEEEE----EeC-------------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE
Q 035500 439 RPRQFEYNPSNPSLMAF----GTL-------------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG 501 (606)
Q Consensus 439 rV~slafsP~dg~~LaS----Gs~-------------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg 501 (606)
.+..++++| +|++.++ |.. .+.|..||..+++..... +.....+++|+| ++..|+.+
T Consensus 132 ~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~~~~p~gl~~sp-dg~~lyv~ 205 (305)
T 3dr2_A 132 SPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----DLDHPNGLAFSP-DEQTLYVS 205 (305)
T ss_dssp CCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----EESSEEEEEECT-TSSEEEEE
T ss_pred CCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----cCCCCcceEEcC-CCCEEEEE
Confidence 366789999 8988886 432 356888888777654432 233578999999 55666655
Q ss_pred ECC------CeEEEEeCCCCCCCcccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 502 SDS------GCVRLFDLNHIPPKVADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 502 S~D------gtIklWDl~~~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
... +.|..||+.... + .....+. .......+++.++|+++++. .+ .|.+||. .++.+..+.
T Consensus 206 ~~~~~~~~~~~i~~~~~~~~~-----l---~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~~ 274 (305)
T 3dr2_A 206 QTPEQGHGSVEITAFAWRDGA-----L---HDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHIP 274 (305)
T ss_dssp ECCC---CCCEEEEEEEETTE-----E---EEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEEEE
T ss_pred ecCCcCCCCCEEEEEEecCCC-----c---cCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEEEE
Confidence 544 789999987531 0 0011111 12335678899999966555 44 4999998 577777776
Q ss_pred CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 574 DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
. +. .+..++|.|++..++++++ ++..+.
T Consensus 275 ~-~~-~~~~~~f~~d~~~L~it~~-~~l~~~ 302 (305)
T 3dr2_A 275 T-PG-TASNCTFDQAQQRLFITGG-PCLWML 302 (305)
T ss_dssp C-SS-CCCEEEECTTSCEEEEEET-TEEEEE
T ss_pred C-CC-ceeEEEEeCCCCEEEEEcC-CeEEEE
Confidence 3 33 6889999999887766654 666554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00059 Score=78.01 Aligned_cols=136 Identities=9% Similarity=0.043 Sum_probs=92.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCC--------------------------CC-----------CEEEEEEeeCC
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGG--------------------------TN-----------SVLGLCWLKKY 494 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH--------------------------~~-----------~V~~L~fsp~~ 494 (606)
.++.++.+|.++++|..+|+.+...++... .. .-..++++|.
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~- 399 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD- 399 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT-
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC-
Confidence 788999999999999999998754432110 00 0012677774
Q ss_pred CCEEEEEEC---------------------------------------------CCeEEEEeCCCCCCCcccccCCcceE
Q 035500 495 PSKLVAGSD---------------------------------------------SGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 495 ~~~LaSgS~---------------------------------------------DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
..+++..+. +|+|..||+.++ +.+-
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG----------~~~W 469 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ----------QAAW 469 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT----------EEEE
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC----------CeEe
Confidence 456665532 367888888774 2222
Q ss_pred EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 530 TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 530 t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.+..+.++..-.+...+.+++.|+.|+.++.||.++|+.+..++.++.....-+.|..+|+..+++.+.
T Consensus 470 ~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 470 EVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp EEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 333444444445566788999999999999999999999998885544444567888888866665554
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=97.61 E-value=7.1e-05 Score=84.65 Aligned_cols=104 Identities=14% Similarity=0.209 Sum_probs=72.9
Q ss_pred cceEEEccCccccchHHHhhc---c---CCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCc
Q 035500 101 KLRVVDLSNITLRNDNLLDLC---Q---VGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMP 172 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p 172 (606)
+|+.++|+++.+....-..+. . ...+=+.|+|+.|+|..+.. +..+++|++|.|. .|.|+.++...|..++
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM-GNMLTEIPKNSLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC-SSCCSBCCSSSSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC-CCCCCCcCHHHhcccc
Confidence 688888888776543222222 1 23356778888888886653 3357888888888 7888888887777665
Q ss_pred -------cccEEEcccccccchhhhhHHhh--cCCchhhhhhcee
Q 035500 173 -------YLMCLSMCETRIVNLWTTTAAIS--KLPYLMELRFQMC 208 (606)
Q Consensus 173 -------~l~~l~~~~~~~~~l~~~~~~l~--~~~~l~~l~~~~~ 208 (606)
+|+.|.|.+|++..+. ..+. .+++|++|.+..+
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLTKLS---DDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp EECTTGGGCCEEECCSSCCCBCC---GGGSTTTCTTCCEEECCSS
T ss_pred ccccccCCccEEECcCCcCCccC---hhhhhccCCCcCEEECCCC
Confidence 8888888888888553 3344 7788888887764
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=97.61 E-value=9.9e-05 Score=80.13 Aligned_cols=95 Identities=20% Similarity=0.287 Sum_probs=74.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+.. +...--+-++|+|++|++..+..++.+.+|++|.|. .|.++.++. .+++|+.|.+
T Consensus 111 ~~L~~L~l~~n~l~~-----l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~-~N~l~~lp~----~~~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD-NNSLKKLPD----LPPSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSC-----CCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC-SSCCSCCCC----CCTTCCEEEC
T ss_pred CCCcEEECCCCccCc-----ccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECC-CCcCcccCC----CcccccEEEC
Confidence 689999998875542 211113567899999999988878889999999999 778888864 3579999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+ .++.++++|++|.+..|
T Consensus 181 ~~n~l~~l----~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 181 GNNQLEEL----PELQNLPFLTAIYADNN 205 (454)
T ss_dssp CSSCCSSC----CCCTTCTTCCEEECCSS
T ss_pred cCCcCCcC----ccccCCCCCCEEECCCC
Confidence 99988876 46888999999987764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00053 Score=78.27 Aligned_cols=136 Identities=7% Similarity=0.043 Sum_probs=94.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCC---------CCE------------------------EEEEEeeCCCCE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGT---------NSV------------------------LGLCWLKKYPSK 497 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~---------~~V------------------------~~L~fsp~~~~~ 497 (606)
..++.++.+|.|+++|..+|+.+..++..... ..+ ..++++|+ ..+
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~-~~~ 406 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ-TGL 406 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT-TTE
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC-CCE
Confidence 68999999999999999999998766532110 001 14677874 456
Q ss_pred EEEEECC-------------------------------------------CeEEEEeCCCCCCCcccccCCcceEEeecC
Q 035500 498 LVAGSDS-------------------------------------------GCVRLFDLNHIPPKVADARGNSSVATYYDF 534 (606)
Q Consensus 498 LaSgS~D-------------------------------------------gtIklWDl~~~~~~~~~l~~~~~i~t~~~~ 534 (606)
++..+.+ |.|..||..++ +.+-.+.+.
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG----------~~~W~~~~~ 476 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ----------KAAWSVEHV 476 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT----------EEEEEEEES
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC----------cEEeecCCC
Confidence 6665432 67888888774 222233344
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 535 EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 535 ~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.++.+..+...+.+++.++.|+.++.||.++++.+..+..++.....-+.|.++|+..++..+
T Consensus 477 ~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~ 539 (677)
T 1kb0_A 477 SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV 539 (677)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEec
Confidence 445555566778888999999999999999999999998655555556777788876555543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0064 Score=61.56 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=96.8
Q ss_pred eeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL--DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~--DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
...++|+| ++.+.++.+. ++.|+++|..+++.+..+....+ ....++++. +....++.-.++.+.++|..+.
T Consensus 23 ~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~-- 96 (266)
T 2iwa_A 23 TQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL-- 96 (266)
T ss_dssp EEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTT--
T ss_pred cccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECCCC--
Confidence 46788998 6655544443 68999999999999987765332 234466665 3344555557889999999873
Q ss_pred CcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC----CCeEEEEEeCCCCeE
Q 035500 518 KVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHR----EPINVAKFSHHSPLC 592 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~----~~I~sV~fsP~g~~L 592 (606)
..+.++... ..- ..+.+++..++.+..+++|.++|..+.+.+..++-+-. ..++.+.|. ++ .+
T Consensus 97 --------~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~l 164 (266)
T 2iwa_A 97 --------SNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EV 164 (266)
T ss_dssp --------EEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EE
T ss_pred --------cEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EE
Confidence 345555433 222 33456777666666789999999999988777763211 246788888 55 57
Q ss_pred EEEEeCCCeE
Q 035500 593 LLLLHLTTMS 602 (606)
Q Consensus 593 LaTgS~DgtI 602 (606)
+++...+..|
T Consensus 165 yvn~~~~~~V 174 (266)
T 2iwa_A 165 WANIWQTDCI 174 (266)
T ss_dssp EEEETTSSEE
T ss_pred EEecCCCCeE
Confidence 7776554444
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=3.8e-05 Score=81.46 Aligned_cols=134 Identities=15% Similarity=0.101 Sum_probs=97.3
Q ss_pred ccceeeeccCCCcccchhHHHHHHHHh---hccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--c---
Q 035500 72 DIEAVDILSKRPCFLKEEYIMSLMHAI---DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--V--- 143 (606)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~--- 143 (606)
.+..+|+ +.|.+....+-.+...+ +..|+.+||+++.++...+..++..=..++.|||++|.|..... +
T Consensus 73 ~L~~L~L---s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 73 SLRQLNL---AGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TCCEEEC---TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hCCEEEe---cCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 3556666 44556666555555553 47999999999999988887776554478999999998855331 1
Q ss_pred --cccccccEEecccCCCcccccccc----cccCccccEEEcccccccchh--hhhHHhhcCCchhhhhhceec
Q 035500 144 --GRFMHLNTLSLDFCSSLASLHEDC----FSCMPYLMCLSMCETRIVNLW--TTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 144 --~~~~~l~tl~l~~~~~~~~~~~~~----~~~~p~l~~l~~~~~~~~~l~--~~~~~l~~~~~l~~l~~~~~~ 209 (606)
....+|.+|+|. +|.|+...-.. +..+|+|+.|.|.+|+|.+.- .-..+|.+.++|++|.+..|-
T Consensus 150 L~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 150 LLHDQCQITTLRLS-NNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHSTTCCCCEEECC-SSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHhcCCccceeeCC-CCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 135789999999 77888743322 367899999999999988642 124677888999999977753
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.50 E-value=4.9e-05 Score=87.59 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=66.2
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
.+|++++|+++.+. ..-.+++ .-..=+.|+|++|+|..+. .++.+.+|.+|+|. .|.|+.|++. |..|++|+.|.
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLS-HNRLTSLPAE-LGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECT-TSCCSSCCSS-GGGGTTCSEEE
T ss_pred CCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCc-CCcCCccChh-hcCCCCCCEEE
Confidence 56777787776654 1112232 2233456788888777664 36677788888888 6777777544 77778888888
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhce
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
|.+|++..+-. .+.+|++|++|.+..
T Consensus 300 L~~N~l~~lp~---~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 300 FFDNMVTTLPW---EFGNLCNLQFLGVEG 325 (727)
T ss_dssp CCSSCCCCCCS---STTSCTTCCCEECTT
T ss_pred CCCCCCCccCh---hhhcCCCccEEeCCC
Confidence 88887775532 266777777776544
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=4e-05 Score=78.28 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=30.5
Q ss_pred EEEccccchhcc--cccccc---ccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhh
Q 035500 129 VLILRATNIRKL--NMVGRF---MHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 129 ~~~~~~~~~~~l--~~~~~~---~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
.|||++|+|..+ ..++.+ ++|++|+|+ .|.|+.++...+ |+|+.|.+.+|++..+ ..+..+|+|++|
T Consensus 228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls-~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~----~~~~~l~~L~~L 299 (310)
T 4glp_A 228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLS-FAGLEQVPKGLP---AKLRVLDLSSNRLNRA----PQPDELPEVDNL 299 (310)
T ss_dssp SEECTTSCCCCCCCSCCSSCCCCTTCCCEECC-SSCCCSCCSCCC---SCCSCEECCSCCCCSC----CCTTSCCCCSCE
T ss_pred EEECCCCCCCccchhhHHhccCcCcCCEEECC-CCCCCchhhhhc---CCCCEEECCCCcCCCC----chhhhCCCccEE
Confidence 345555554444 223333 345555555 444554443322 4555555555554433 223444555544
Q ss_pred h
Q 035500 204 R 204 (606)
Q Consensus 204 ~ 204 (606)
.
T Consensus 300 ~ 300 (310)
T 4glp_A 300 T 300 (310)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00013 Score=79.52 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=59.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccccccc-ccccEEecccCCCcccccccccccCccccEEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRF-MHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
.+|+.+||+++.+....-...+..-.+=+.|+|++|++...- ...+ .+|++|.|. +|.|+.+++..| .+|+|+.|.
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~~L~~L~Ls-~N~l~~ip~~~~-~l~~L~~L~ 450 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FRCLPPRIKVLDLH-SNKIKSIPKQVV-KLEALQELN 450 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG-GGSCCTTCCEEECC-SSCCCCCCGGGG-GCTTCCEEE
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch-hhhhcccCCEEECC-CCcccccchhhh-cCCCCCEEE
Confidence 455555555555443222222222223455666666654321 1122 577777777 667777776655 777777777
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|.+|++..+-.. ++..+++|++|.+..+
T Consensus 451 L~~N~l~~l~~~--~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 451 VASNQLKSVPDG--IFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCSSCCCCCCTT--TTTTCTTCCEEECCSS
T ss_pred CCCCcCCccCHH--HhccCCcccEEECcCC
Confidence 777777755322 4666777777776654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=97.44 E-value=6.9e-06 Score=78.52 Aligned_cols=84 Identities=18% Similarity=0.304 Sum_probs=46.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccc-cccccCccccEEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMCLS 178 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~l~ 178 (606)
.+|+.++|+++.+. .+-.+...-.+=+.|+|++|+|..+..++.+++|++|+|. .|.|+.++. +.|..+|+|+.|.
T Consensus 70 ~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~-~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 70 ENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS-NNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp TTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEES-EEECCCHHHHHHHTTTTTCSEEE
T ss_pred CCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECC-CCcCCchhHHHHHhcCCCCCEEE
Confidence 45666666665444 1222221112334566666666666555566666666666 556666544 4466666666666
Q ss_pred cccccccc
Q 035500 179 MCETRIVN 186 (606)
Q Consensus 179 ~~~~~~~~ 186 (606)
|.+|++..
T Consensus 147 l~~N~l~~ 154 (198)
T 1ds9_A 147 LAGNPLYN 154 (198)
T ss_dssp ECSCHHHH
T ss_pred ecCCcccc
Confidence 66665543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00011 Score=80.67 Aligned_cols=106 Identities=24% Similarity=0.206 Sum_probs=72.5
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+||++||+++.+..-. .+.+..=..=++|+|++|++..+. .++.+.+|++|+|. .|.|+.++...|..+++|+.|
T Consensus 52 ~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp SSCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TSCCCCSTTCSCTTCTTCCEE
T ss_pred CCceEEECCCCcCCccC-cccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc-ccccccCCCccccccccccEE
Confidence 46888888887543210 111121224467888888888774 57788888888888 778888877778888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+|++..+ .--+++.+|++|++|.+..+
T Consensus 130 ~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 130 NVAHNLIQSF-KLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp ECCSSCCCCC-CCCGGGGGCTTCCEEECTTS
T ss_pred ecCCCcccee-cChhhhcccCCCCEEeCcCC
Confidence 8888877642 11245677788888876654
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0002 Score=66.84 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=67.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|++|.+..-. .+.+..=-+=+.|+|++|+|..+.- ++.+++|++|+|. .|.|+.++++-|..||+|+.|
T Consensus 30 ~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN-DNQLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC-CCccCEeCHHHhcCCCCCCEE
Confidence 67899999997664321 1111111245789999999999874 6789999999999 899999999999999999999
Q ss_pred Eccccccc
Q 035500 178 SMCETRIV 185 (606)
Q Consensus 178 ~~~~~~~~ 185 (606)
.|.+|.+.
T Consensus 108 ~L~~N~~~ 115 (170)
T 3g39_A 108 WLLNNPWD 115 (170)
T ss_dssp ECCSSCBC
T ss_pred EeCCCCCC
Confidence 99999765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0015 Score=70.63 Aligned_cols=133 Identities=11% Similarity=0.036 Sum_probs=89.7
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------CCCeEEEEeCC
Q 035500 449 NPSLMAFGTLD-----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----------DSGCVRLFDLN 513 (606)
Q Consensus 449 dg~~LaSGs~D-----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----------~DgtIklWDl~ 513 (606)
+++.+++.... ++|.++|..+++.+..+.. |. .+ ++.++|++ ++++.+. .++.|.++|..
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-G~-~P--gia~SpDg-k~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-GF-LP--HPVAAEDG-SFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-CS-SC--EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-CC-CC--ceEECCCC-CEEEEEeccccccccCCCCCEEEEEECC
Confidence 55655555442 6999999999999988874 33 34 89999954 5554443 47799999998
Q ss_pred CCCCCcccccCCcceEEeec--------CCCeEEEEEccCCCEEEEEeC--CCcEEEEECCCCceeEEEcCCCCC-----
Q 035500 514 HIPPKVADARGNSSVATYYD--------FEQLTSVHVNSTDDQFLASGY--SKNVALYDINTEKPLQLFTDMHRE----- 578 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~--------~~~V~sV~~sp~g~~LaSgs~--Dg~I~IWDlrt~k~v~~l~~gH~~----- 578 (606)
+. ..+.++.- ...-..+.++|+|++++.+.. ++.|.+.|+.+++.+..++.+...
T Consensus 158 t~----------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~ 227 (426)
T 3c75_H 158 TF----------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPA 227 (426)
T ss_dssp TC----------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred CC----------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccC
Confidence 84 33444331 122457889999998888764 588999999999998888742210
Q ss_pred -CeEEEEEeCCCCeEEEEE
Q 035500 579 -PINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 579 -~I~sV~fsP~g~~LLaTg 596 (606)
.-.-+.++++|..++++.
T Consensus 228 g~~~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 228 SPTVFYMNCRDGSLARVDF 246 (426)
T ss_dssp ETTEEEEEETTSSEEEEEC
T ss_pred CCcEEEEEcCCCCEEEEEC
Confidence 011245666666544444
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0049 Score=70.00 Aligned_cols=147 Identities=12% Similarity=0.136 Sum_probs=95.4
Q ss_pred eEEEEcCCCCCEEEEEeCCCc-------------EEEEECCCCce--EEEEeccC-CCCCEEEEEEeeCCCCEE-EEEEC
Q 035500 441 RQFEYNPSNPSLMAFGTLDGE-------------VIVINHENGNV--ACYIPSIG-GTNSVLGLCWLKKYPSKL-VAGSD 503 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGt-------------VrIWDi~tg~~--v~~~~~~g-H~~~V~~L~fsp~~~~~L-aSgS~ 503 (606)
..++|+ |++.|+.++.+.. |++|++.++.. ...+.... |...+.++.|+|+ +.++ ++.+.
T Consensus 178 ~~~~Ws--Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~ 254 (693)
T 3iuj_A 178 SGISWL--GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED-DRFLLISAAN 254 (693)
T ss_dssp CCCEEE--TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTT-SCEEEEEEES
T ss_pred ccEEEe--CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCC-CCEEEEEEcc
Confidence 456798 7788888887744 99999987543 33333334 5556889999995 5554 55443
Q ss_pred ---CCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEE-EEEeCC---CcEEEEECCCCce--eEEEc
Q 035500 504 ---SGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQF-LASGYS---KNVALYDINTEKP--LQLFT 573 (606)
Q Consensus 504 ---DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~L-aSgs~D---g~I~IWDlrt~k~--v~~l~ 573 (606)
+..|.+||+..+. .....+. +....... |++++..| +.+..+ +.|..||+.++.. ...+.
T Consensus 255 ~~~~~~i~~~d~~~~~---------~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 255 STSGNRLYVKDLSQEN---------APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp SSSCCEEEEEETTSTT---------CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred CCCCcEEEEEECCCCC---------CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence 3589999987742 1233333 33334444 56666644 444443 6799999998754 34555
Q ss_pred CCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 574 DMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 574 ~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
.|...+. .|+|++.+++++...|+.-+
T Consensus 325 -~~~~~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 325 -PERQQVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp -CCCSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred -cCCCCEE--EEEEECCEEEEEEEECCeeE
Confidence 4666655 89999998888877776433
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00016 Score=79.96 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=54.2
Q ss_pred eeEEEccccchhcccccccc-ccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 127 CHVLILRATNIRKLNMVGRF-MHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~-~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
=+.|+|++|++... ....+ .+|++|.|+ +|.|+.|+++.| .+|+|+.|.+.+|++..+-.. ++..+++|++|.+
T Consensus 430 L~~L~l~~n~l~~~-~~~~l~~~L~~L~L~-~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l 504 (562)
T 3a79_B 430 ILVLNLSSNMLTGS-VFRCLPPKVKVLDLH-NNRIMSIPKDVT-HLQALQELNVASNQLKSVPDG--VFDRLTSLQYIWL 504 (562)
T ss_dssp CCEEECCSSCCCGG-GGSSCCTTCSEEECC-SSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTT--STTTCTTCCCEEC
T ss_pred CCEEECCCCCCCcc-hhhhhcCcCCEEECC-CCcCcccChhhc-CCCCCCEEECCCCCCCCCCHH--HHhcCCCCCEEEe
Confidence 34566666655421 12233 588888888 778888888777 888888888888888866433 4777888888877
Q ss_pred ceec
Q 035500 206 QMCL 209 (606)
Q Consensus 206 ~~~~ 209 (606)
.+.+
T Consensus 505 ~~N~ 508 (562)
T 3a79_B 505 HDNP 508 (562)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6643
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.005 Score=66.91 Aligned_cols=153 Identities=12% Similarity=0.050 Sum_probs=104.1
Q ss_pred ceeEEEEcCCCCCEEEEEeCC------CcEEEEECCCCceEEEEeccCCC-CCEEEEEEeeCCCCEEEEEE---------
Q 035500 439 RPRQFEYNPSNPSLMAFGTLD------GEVIVINHENGNVACYIPSIGGT-NSVLGLCWLKKYPSKLVAGS--------- 502 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~D------GtVrIWDi~tg~~v~~~~~~gH~-~~V~~L~fsp~~~~~LaSgS--------- 502 (606)
++..+...| ++ +++++..+ |.|.++|.++++.+..++..++. .--+.+-|+| +.+.++|..
T Consensus 139 ~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~ 215 (462)
T 2ece_A 139 RLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIED 215 (462)
T ss_dssp EEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTT
T ss_pred cccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCcccccc
Confidence 366778899 88 77776666 78999999999998877643232 2345688898 556777764
Q ss_pred ----------CCCeEEEEeCCCCCCCcccccCCcceEEeecC---CCeEEEEE--ccCCCEEEEEe------CCCcEEEE
Q 035500 503 ----------DSGCVRLFDLNHIPPKVADARGNSSVATYYDF---EQLTSVHV--NSTDDQFLASG------YSKNVALY 561 (606)
Q Consensus 503 ----------~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~---~~V~sV~~--sp~g~~LaSgs------~Dg~I~IW 561 (606)
.+.+|.+||+.+. +.+.++... .....|.| +|++++.+.++ .+++|.+|
T Consensus 216 g~~~~~~~~~~~d~V~v~D~~~~----------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~ 285 (462)
T 2ece_A 216 GLKLEHLKDRYGNRIHFWDLRKR----------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLW 285 (462)
T ss_dssp CCCTTTHHHHSCCEEEEEETTTT----------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred ccchhhhhhccCCEEEEEECCCC----------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEE
Confidence 4789999999873 344555542 12445656 99998777666 45688776
Q ss_pred ECCCCce--eEE--EcC----C-----------CCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 562 DINTEKP--LQL--FTD----M-----------HREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 562 Dlrt~k~--v~~--l~~----g-----------H~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
....++- .+. +.. + -......|.++|+|++++++.-..+.|+.
T Consensus 286 ~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vav 347 (462)
T 2ece_A 286 FYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQ 347 (462)
T ss_dssp EEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEE
T ss_pred EecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEE
Confidence 5544421 111 110 0 02457789999999999999888888765
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00016 Score=83.22 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=55.0
Q ss_pred CCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhh
Q 035500 124 GSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLME 202 (606)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~ 202 (606)
--.=++|+|++|.|..+. .++.+.+|.+|+|. +|.|+.|+ ..|..|++|+.|.|.+|++..+.. .+..|++|++
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls-~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~ 297 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLN-GNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPA---ELGSCFQLKY 297 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCT-TSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCS---SGGGGTTCSE
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCEEEee-CCcCcccC-hhhhCCCCCCEEeCcCCcCCccCh---hhcCCCCCCE
Confidence 334567888888887775 45577788888888 77777776 347778888888888888775533 3556666777
Q ss_pred hhhce
Q 035500 203 LRFQM 207 (606)
Q Consensus 203 l~~~~ 207 (606)
|.+.+
T Consensus 298 L~L~~ 302 (727)
T 4b8c_D 298 FYFFD 302 (727)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 76554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.012 Score=59.59 Aligned_cols=132 Identities=13% Similarity=0.074 Sum_probs=94.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
...+.+....++.+.+||.++.+.+..++..+ .-+++++. + ..|+.+..++.|.++|..+.+ .+
T Consensus 105 g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~---eGwGLt~D--g-~~L~vSdGs~~l~~iDp~T~~----------v~ 168 (268)
T 3nok_A 105 GERLYQLTWTEGLLFTWSGMPPQRERTTRYSG---EGWGLCYW--N-GKLVRSDGGTMLTFHEPDGFA----------LV 168 (268)
T ss_dssp SSCEEEEESSSCEEEEEETTTTEEEEEEECSS---CCCCEEEE--T-TEEEEECSSSEEEEECTTTCC----------EE
T ss_pred CCEEEEEEccCCEEEEEECCcCcEEEEEeCCC---ceeEEecC--C-CEEEEECCCCEEEEEcCCCCe----------EE
Confidence 34555566678999999999999999887533 34666654 3 455555568899999988742 23
Q ss_pred EEee---cC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC------------CCCCeEEEEEeCCCC
Q 035500 529 ATYY---DF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM------------HREPINVAKFSHHSP 590 (606)
Q Consensus 529 ~t~~---~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g------------H~~~I~sV~fsP~g~ 590 (606)
.+.. .. ..++.+.|. +|.+++....+..|.+.|.++++.+..+..+ -..-.+.|+|+|++.
T Consensus 169 ~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~ 247 (268)
T 3nok_A 169 GAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG 247 (268)
T ss_dssp EEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred EEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC
Confidence 3332 11 236778877 6666666667889999999999998777631 113568999999998
Q ss_pred eEEEEEe
Q 035500 591 LCLLLLH 597 (606)
Q Consensus 591 ~LLaTgS 597 (606)
.+++||-
T Consensus 248 rlfVTGK 254 (268)
T 3nok_A 248 RIFMTGK 254 (268)
T ss_dssp CEEEEET
T ss_pred EEEEeCC
Confidence 8998873
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0095 Score=60.26 Aligned_cols=136 Identities=7% Similarity=-0.073 Sum_probs=95.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVAT 530 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t 530 (606)
.+.++.-.+++|.++|..+++.+..++. + ...-+++++ ++...++ +..+++|.++|..+.+ .+.+
T Consensus 77 ~lyv~t~~~~~v~viD~~t~~v~~~i~~-g-~~~g~glt~--Dg~~l~v-s~gs~~l~viD~~t~~----------v~~~ 141 (266)
T 2iwa_A 77 KLYQVVWLKNIGFIYDRRTLSNIKNFTH-Q-MKDGWGLAT--DGKILYG-SDGTSILYEIDPHTFK----------LIKK 141 (266)
T ss_dssp EEEEEETTCSEEEEEETTTTEEEEEEEC-C-SSSCCEEEE--CSSSEEE-ECSSSEEEEECTTTCC----------EEEE
T ss_pred EEEEEEecCCEEEEEECCCCcEEEEEEC-C-CCCeEEEEE--CCCEEEE-ECCCCeEEEEECCCCc----------EEEE
Confidence 4445555689999999999999988864 3 223345554 3444444 4468899999988732 2333
Q ss_pred eec---C---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-C-----------CCCeEEEEEeCCCCeE
Q 035500 531 YYD---F---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM-H-----------REPINVAKFSHHSPLC 592 (606)
Q Consensus 531 ~~~---~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g-H-----------~~~I~sV~fsP~g~~L 592 (606)
..- . ..++.+.|. ++..++....++.|.+.|..+++.+..+..+ - ....+.++|+|++..+
T Consensus 142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence 331 1 236788888 6666666667899999999999998888631 0 1356899999999999
Q ss_pred EEEEeCCCeE
Q 035500 593 LLLLHLTTMS 602 (606)
Q Consensus 593 LaTgS~DgtI 602 (606)
++|+.....+
T Consensus 221 fVTgk~~~~v 230 (266)
T 2iwa_A 221 FVTGKLWPKL 230 (266)
T ss_dssp EEEETTCSEE
T ss_pred EEECCCCCeE
Confidence 9999877655
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00033 Score=74.16 Aligned_cols=133 Identities=16% Similarity=0.118 Sum_probs=100.1
Q ss_pred CccceeeeccCCCcccchhHHHHHHHHhhccceEEEccCccccchHHHhhcc----CCCceeEEEccccchhccc-----
Q 035500 71 FDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQ----VGSSCHVLILRATNIRKLN----- 141 (606)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~----- 141 (606)
..++.+|+ +.|.+..+-+..+..++- +|+.++|++|.++...+..|+. ....=+.|+|++|.|....
T Consensus 101 ~~L~~L~L---s~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNL---ASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEEC---TTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEe---cCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 46777777 455677777766666654 7999999999999887777653 3345678999999987633
Q ss_pred -cccccccccEEecccCCCccccc----ccccccCccccEEEcccccccchh--hhhHHhhcCCchhhhhhcee
Q 035500 142 -MVGRFMHLNTLSLDFCSSLASLH----EDCFSCMPYLMCLSMCETRIVNLW--TTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 142 -~~~~~~~l~tl~l~~~~~~~~~~----~~~~~~~p~l~~l~~~~~~~~~l~--~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+...+.|++|+|. .|.|+... ...+..+++|+.|.|.+|+|.+.- .-..+|...++|++|.+..+
T Consensus 177 ~~L~~~~~L~~L~Ls-~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 177 EGLAGNTSVTHLSLL-HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHTCSSCCEEECT-TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHhcCCCcCEEeCC-CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 22467899999999 77888654 244677899999999999998642 23356778899999997764
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00025 Score=82.79 Aligned_cols=103 Identities=21% Similarity=0.334 Sum_probs=56.2
Q ss_pred ccceEEEccCcccc----chHHHhhccCCCceeEEEccccchhcc--ccccccccccEEecccCCCccc--ccccccccC
Q 035500 100 QKLRVVDLSNITLR----NDNLLDLCQVGSSCHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLAS--LHEDCFSCM 171 (606)
Q Consensus 100 ~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~--~~~~~~~~~ 171 (606)
.+||++||+++.+. .+.+++|. .=++|+|++|.|..+ ..++.+.+|++|+|. .|.++. .....|..+
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~----~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLP----NLRILDLGSSKIYFLHPDAFQGLFHLFELRLY-FCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCT----TCCEEECTTCCCCEECTTSSCSCSSCCCEECT-TCCCSSCCSTTCCCSSC
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCC----CCCEEECCCCcCcccCHhHccCCcccCEeeCc-CCCCCcccccCcccccc
Confidence 45666666665222 12222222 234566666666665 355666666666666 555554 333456666
Q ss_pred ccccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 172 PYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 172 p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|+|+.|.+.+|++..+. ..+.+.+|++|++|.+..+
T Consensus 123 ~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESS
T ss_pred CCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCC
Confidence 66666666666665431 1134556666666665543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0065 Score=65.98 Aligned_cols=142 Identities=9% Similarity=0.127 Sum_probs=96.9
Q ss_pred CCCCCEE-EEEeCCCcEEEEECCCC----ceEEEEe---c---cCCCCCEEEEEEeeCCCCEEEEEECC------CeEEE
Q 035500 447 PSNPSLM-AFGTLDGEVIVINHENG----NVACYIP---S---IGGTNSVLGLCWLKKYPSKLVAGSDS------GCVRL 509 (606)
Q Consensus 447 P~dg~~L-aSGs~DGtVrIWDi~tg----~~v~~~~---~---~gH~~~V~~L~fsp~~~~~LaSgS~D------gtIkl 509 (606)
+ +.+++ ++|-.+++|.|+|+.+. +...+++ . .+ ...-..+...|+ + .++|+..+ |.|.+
T Consensus 93 ~-~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pd-G-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 I-ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPD-A-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp C-CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSS-C-EEEEEEEETTSCSCCEEEE
T ss_pred c-cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeECCC-e-EEEEcCCCcCCCCCCeEEE
Confidence 5 45555 45667899999998765 4555552 1 11 113455677774 4 77777666 78999
Q ss_pred EeCCCCCCCcccccCCcceEEeec-CCC---eEEEEEccCCCEEEEEe-------------------CCCcEEEEECCCC
Q 035500 510 FDLNHIPPKVADARGNSSVATYYD-FEQ---LTSVHVNSTDDQFLASG-------------------YSKNVALYDINTE 566 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~-~~~---V~sV~~sp~g~~LaSgs-------------------~Dg~I~IWDlrt~ 566 (606)
.|..+. ..+.++.. ..+ -..+.|+|+++.++++. .+.+|.+||+.++
T Consensus 169 lD~~T~----------~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 169 LDHYSF----------EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp ECTTTC----------CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred EECCCC----------eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 998873 34555542 111 34688899999888885 4689999999999
Q ss_pred ceeEEEcCCCC-CCeEEEEE--eCCCCeEEEEEe-----CCCeE
Q 035500 567 KPLQLFTDMHR-EPINVAKF--SHHSPLCLLLLH-----LTTMS 602 (606)
Q Consensus 567 k~v~~l~~gH~-~~I~sV~f--sP~g~~LLaTgS-----~DgtI 602 (606)
+.+.++..+.. .....+.| +|++++.++++- .+++|
T Consensus 239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V 282 (462)
T 2ece_A 239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSI 282 (462)
T ss_dssp EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEE
T ss_pred cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceE
Confidence 88888875322 23445666 999999888887 66665
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.017 Score=57.66 Aligned_cols=131 Identities=11% Similarity=0.061 Sum_probs=92.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+.+.+..-.++.+.+||.++.+.+..++..+ .-+++++. +..+++| ..++.|.++|..+.. .+.
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~---~Gwglt~d--g~~L~vS-dgs~~l~~iDp~t~~----------~~~ 138 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATLTPRARFRYPG---EGWALTSD--DSHLYMS-DGTAVIRKLDPDTLQ----------QVG 138 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEECSS---CCCEEEEC--SSCEEEE-CSSSEEEEECTTTCC----------EEE
T ss_pred CEEEEEEeeCCEEEEEECCcCcEEEEEeCCC---CceEEeeC--CCEEEEE-CCCCeEEEEeCCCCe----------EEE
Confidence 3455555678999999999999999887533 33666643 4445555 458899999988742 233
Q ss_pred Eeec------CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC------------CCCCeEEEEEeCCCCe
Q 035500 530 TYYD------FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM------------HREPINVAKFSHHSPL 591 (606)
Q Consensus 530 t~~~------~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g------------H~~~I~sV~fsP~g~~ 591 (606)
+... ...++.+.|. +|..++....+..|.+.|.++++.+..+.-+ -..-.+.|+|+|++..
T Consensus 139 ~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 217 (243)
T 3mbr_X 139 SIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR 217 (243)
T ss_dssp EEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred EEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence 3331 1336677766 5666666667789999999999998777621 1135689999999998
Q ss_pred EEEEEe
Q 035500 592 CLLLLH 597 (606)
Q Consensus 592 LLaTgS 597 (606)
+++||-
T Consensus 218 lfVTGK 223 (243)
T 3mbr_X 218 LFVTGK 223 (243)
T ss_dssp EEEEET
T ss_pred EEEECC
Confidence 998873
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0061 Score=69.44 Aligned_cols=158 Identities=9% Similarity=0.074 Sum_probs=102.4
Q ss_pred EEEEcCCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEeccCCC-------CCEEEEEEeeCCC
Q 035500 442 QFEYNPSNPSLMAFGTLDG-------------------EVIVINHENGNVACYIPSIGGT-------NSVLGLCWLKKYP 495 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DG-------------------tVrIWDi~tg~~v~~~~~~gH~-------~~V~~L~fsp~~~ 495 (606)
.++++| +++.++.++.++ .|..+|..+|+.+..++...|. ....-+.... ++
T Consensus 247 ~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG 324 (677)
T 1kb0_A 247 SMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AG 324 (677)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TT
T ss_pred ceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CC
Confidence 567888 677888887764 5999999999999988765553 1222223322 33
Q ss_pred ---CEEEEEECCCeEEEEeCCCCCCCcccccCC-----------cceE------------Eee---cCCCeEEEEEccCC
Q 035500 496 ---SKLVAGSDSGCVRLFDLNHIPPKVADARGN-----------SSVA------------TYY---DFEQLTSVHVNSTD 546 (606)
Q Consensus 496 ---~~LaSgS~DgtIklWDl~~~~~~~~~l~~~-----------~~i~------------t~~---~~~~V~sV~~sp~g 546 (606)
..++.++.+|.+.++|..+++..-...... .++. .+. +...-..++++|+.
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 578899999999999998864311000000 0000 000 00001257889988
Q ss_pred CEEEEEeC-------------------------------------------CCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 547 DQFLASGY-------------------------------------------SKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 547 ~~LaSgs~-------------------------------------------Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
.++++... .+.|..||+.+++.+..++ +...++..
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g 482 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGG 482 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCc
Confidence 87777543 2789999999999988887 34455556
Q ss_pred EEeCCCCeEEEEEeCCCeEEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+...+.. +..++.|+.+++
T Consensus 483 ~~~~~g~~-v~~g~~dg~l~a 502 (677)
T 1kb0_A 483 TLTTAGNV-VFQGTADGRLVA 502 (677)
T ss_dssp EEEETTTE-EEEECTTSEEEE
T ss_pred ceEeCCCE-EEEECCCCcEEE
Confidence 66677774 556788998875
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.018 Score=61.73 Aligned_cols=151 Identities=11% Similarity=0.159 Sum_probs=94.6
Q ss_pred ceeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCC----eEEEEeC
Q 035500 439 RPRQFEYNPS-NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSG----CVRLFDL 512 (606)
Q Consensus 439 rV~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~Dg----tIklWDl 512 (606)
.+..++++|. ++ .|..+...+.|+.+|...+...... .......+++|++ ++..| ++...++ .+...+.
T Consensus 138 ~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~---~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVY---SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEE---CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEe---cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC
Confidence 3678899983 45 4555544488999999876654433 2345688999998 45644 4443222 2333332
Q ss_pred CCCCCCcccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 513 NHIPPKVADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
.. . ......+........++++| ++.++++-..++.|..||...+........+....-+.++|+|++.+
T Consensus 213 ~g-~--------~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 213 ES-G--------FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp GG-T--------SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred CC-c--------eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence 22 1 11112232333457788999 66777777778999999998766533333222345678999999998
Q ss_pred EEEEEeCCCeEE
Q 035500 592 CLLLLHLTTMSR 603 (606)
Q Consensus 592 LLaTgS~DgtIR 603 (606)
++++-.....|.
T Consensus 284 lyv~d~~~~~I~ 295 (430)
T 3tc9_A 284 AYIVVVNQHYIL 295 (430)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCEEE
Confidence 788777666664
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00027 Score=73.49 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=35.5
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCc-ccccccccccCccccE-EEcccccccchhhhhHHhhcCCchhhh
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSL-ASLHEDCFSCMPYLMC-LSMCETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~-~~~~~~~~~~~p~l~~-l~~~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
+.|+|++|+|+.+. .+..+.+|++|+|. .|.| +.++.+.|..+|+|.. +.+..|++..+- -.++..|++|+.|
T Consensus 33 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~--~~~f~~l~~L~~L 109 (350)
T 4ay9_X 33 IELRFVLTKLRVIQKGAFSGFGDLEKIEIS-QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN--PEAFQNLPNLQYL 109 (350)
T ss_dssp SEEEEESCCCSEECTTSSTTCTTCCEEEEE-CCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC--TTSBCCCTTCCEE
T ss_pred CEEEccCCcCCCcCHHHHcCCCCCCEEECc-CCCCCCccChhHhhcchhhhhhhcccCCcccccC--chhhhhccccccc
Confidence 44555555555553 24455555555555 3333 3344455555555443 233334444331 1234445555555
Q ss_pred hhce
Q 035500 204 RFQM 207 (606)
Q Consensus 204 ~~~~ 207 (606)
.+.+
T Consensus 110 ~l~~ 113 (350)
T 4ay9_X 110 LISN 113 (350)
T ss_dssp EEEE
T ss_pred cccc
Confidence 5443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.012 Score=67.07 Aligned_cols=158 Identities=11% Similarity=0.086 Sum_probs=101.2
Q ss_pred EEEEcCCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEeccCCC-------CCEEEEEEeeCCC
Q 035500 442 QFEYNPSNPSLMAFGTLDGE-------------------VIVINHENGNVACYIPSIGGT-------NSVLGLCWLKKYP 495 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGt-------------------VrIWDi~tg~~v~~~~~~gH~-------~~V~~L~fsp~~~ 495 (606)
.++++| +.++++.++.++. |..||..+|+.+..++...|. .......... ++
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G 316 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DG 316 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TT
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CC
Confidence 467888 6778999988874 999999999999888765443 1222222222 22
Q ss_pred C---EEEEEECCCeEEEEeCCCCCCCcc------ccc------CCcce---------------EEee---cCCCeEEEEE
Q 035500 496 S---KLVAGSDSGCVRLFDLNHIPPKVA------DAR------GNSSV---------------ATYY---DFEQLTSVHV 542 (606)
Q Consensus 496 ~---~LaSgS~DgtIklWDl~~~~~~~~------~l~------~~~~i---------------~t~~---~~~~V~sV~~ 542 (606)
. .++.++.+|.++++|..+++.... .+. ...++ ..+. +......+++
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 2 688899999999999988643100 000 00000 0000 0011234788
Q ss_pred ccCCCEEEEEeC---------------------------------------------CCcEEEEECCCCceeEEEcCCCC
Q 035500 543 NSTDDQFLASGY---------------------------------------------SKNVALYDINTEKPLQLFTDMHR 577 (606)
Q Consensus 543 sp~g~~LaSgs~---------------------------------------------Dg~I~IWDlrt~k~v~~l~~gH~ 577 (606)
+|+..++++.+. +|.|..||+.+++.+..++. +
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~- 474 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY-V- 474 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE-S-
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC-C-
Confidence 888887776532 37799999999999888873 3
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 578 EPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 578 ~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+....+...+. ++..|+.|+.++.
T Consensus 475 ~~~~~g~~~tagg-lvf~gt~dg~l~a 500 (689)
T 1yiq_A 475 TIFNGGTLSTAGN-LVFEGSADGRVIA 500 (689)
T ss_dssp SSCCCCEEEETTT-EEEEECTTSEEEE
T ss_pred CCccCccceECCC-EEEEECCCCcEEE
Confidence 3344445566666 5677899999885
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.027 Score=57.02 Aligned_cols=152 Identities=15% Similarity=0.134 Sum_probs=95.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc---------C--------CCCCEEEEEEeeCCCCEEEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI---------G--------GTNSVLGLCWLKKYPSKLVAGS 502 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~---------g--------H~~~V~~L~fsp~~~~~LaSgS 502 (606)
+..++|+| +++++.++..++.|..||..++......... + ....+.++++.+.+ ..|+.+.
T Consensus 21 p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~-g~l~v~d 98 (322)
T 2fp8_A 21 PNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN-NQLYIVD 98 (322)
T ss_dssp CCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT-TEEEEEE
T ss_pred ceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC-CcEEEEE
Confidence 56778999 7887888889999999998765543221100 0 11357899998633 4555565
Q ss_pred CCCeEEEEeCCCCCCCcccccCCcceE-Eeec--CCCeEEEEEcc-CCCEEEEEeC-----------------CCcEEEE
Q 035500 503 DSGCVRLFDLNHIPPKVADARGNSSVA-TYYD--FEQLTSVHVNS-TDDQFLASGY-----------------SKNVALY 561 (606)
Q Consensus 503 ~DgtIklWDl~~~~~~~~~l~~~~~i~-t~~~--~~~V~sV~~sp-~g~~LaSgs~-----------------Dg~I~IW 561 (606)
..+.|..+|...... ..+. ...+ ....+.+++.+ +|+++++-.. ++.|..|
T Consensus 99 ~~~~i~~~d~~~g~~--------~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA--------TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp TTTEEEEECTTCEEC--------EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred CCCCEEEEeCCCCEE--------EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 555688888664210 0111 1111 13478899999 8887776533 3678999
Q ss_pred ECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 562 DINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 562 Dlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
|..+++...... .-...+.++|+|++..++++-+..+.|.
T Consensus 171 d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~ 210 (322)
T 2fp8_A 171 DPSTKETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIV 210 (322)
T ss_dssp ETTTTEEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEE
T ss_pred eCCCCEEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEE
Confidence 988776533222 1234567999999987777766655553
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.012 Score=59.52 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=89.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVAT 530 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t 530 (606)
.+.+..-.++.+.+||.++.+.+..++..+ .-+++++. +..+++| ..++.|.++|..+.+ .+.+
T Consensus 98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~d--g~~L~~S-dGs~~i~~iDp~T~~----------v~~~ 161 (262)
T 3nol_A 98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHN--DQYLIMS-DGTPVLRFLDPESLT----------PVRT 161 (262)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEEC--SSCEEEC-CSSSEEEEECTTTCS----------EEEE
T ss_pred EEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecC--CCEEEEE-CCCCeEEEEcCCCCe----------EEEE
Confidence 344444568999999999999999887533 23455543 4344444 447789999988742 2333
Q ss_pred eec---C---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC---------C--CCCeEEEEEeCCCCeEE
Q 035500 531 YYD---F---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM---------H--REPINVAKFSHHSPLCL 593 (606)
Q Consensus 531 ~~~---~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g---------H--~~~I~sV~fsP~g~~LL 593 (606)
... . ..++.+.|. +|.+++....++.|.+.|.++++.+..+..+ + ....+.|+|+|++..++
T Consensus 162 I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf 240 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF 240 (262)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred EEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence 221 1 335667776 6666666667889999999999998777631 0 13568999999999888
Q ss_pred EEEe
Q 035500 594 LLLH 597 (606)
Q Consensus 594 aTgS 597 (606)
+||-
T Consensus 241 VTGK 244 (262)
T 3nol_A 241 VTGK 244 (262)
T ss_dssp EEET
T ss_pred EECC
Confidence 8873
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.022 Score=57.44 Aligned_cols=161 Identities=11% Similarity=0.073 Sum_probs=101.7
Q ss_pred cceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE
Q 035500 421 LHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL 498 (606)
Q Consensus 421 i~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L 498 (606)
....++....+|+.. .+ ...+.|+ ++.+..+++.+| .|+++|.++++......+.. .-..-++... +....
T Consensus 28 ~~~~~vv~~~phd~~-~f-tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly 100 (262)
T 3nol_A 28 IYDYQIVHSYPHDTK-AF-TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIV 100 (262)
T ss_dssp EEEEEEEEEEECCTT-CE-EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEE
T ss_pred ccceEEEEEecCCCC-cc-cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEE
Confidence 344444445555543 11 4678887 456777777776 99999999999988776522 2122345554 33445
Q ss_pred EEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC---
Q 035500 499 VAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM--- 575 (606)
Q Consensus 499 aSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g--- 575 (606)
++.-.++.+.+||..+. +.+.++.....-..+ .+++..++.+..++.|.++|..+.+.+..++-+
T Consensus 101 ~ltw~~~~v~v~D~~t~----------~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g 168 (262)
T 3nol_A 101 GLTWKNGLGFVWNIRNL----------RQVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG 168 (262)
T ss_dssp EEESSSSEEEEEETTTC----------CEEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT
T ss_pred EEEeeCCEEEEEECccC----------cEEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC
Confidence 55556899999999883 456666643322334 356766555555789999999999887776631
Q ss_pred CC-CCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 576 HR-EPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 576 H~-~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
.. ..++.+.|. +| .+++..-.+..|
T Consensus 169 ~~~~~lNELe~~-~G-~lyan~w~~~~I 194 (262)
T 3nol_A 169 EELPELNELEWV-DG-EIFANVWQTNKI 194 (262)
T ss_dssp EECCCEEEEEEE-TT-EEEEEETTSSEE
T ss_pred ccccccceeEEE-CC-EEEEEEccCCeE
Confidence 11 445667776 44 477666444433
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.032 Score=56.42 Aligned_cols=163 Identities=8% Similarity=-0.056 Sum_probs=106.7
Q ss_pred CCccceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCE
Q 035500 418 WPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSK 497 (606)
Q Consensus 418 ~~~i~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~ 497 (606)
.|...+.++....+++... + ...+.|+ ++.+..+.+.+|.|+++|.++++..... + +..-..-++.+. +...
T Consensus 37 ~~~~~~~~Vv~~~phd~~~-f-tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~L 108 (268)
T 3nok_A 37 EPVRRVAHIIREYPHATNA-F-TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERL 108 (268)
T ss_dssp CCEEEEEEEEEEEECCTTC-C-EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCE
T ss_pred CccccceEEEEEEcCCCcc-c-cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEE
Confidence 3434444555555555431 1 4677886 4567778888899999999999998876 4 322223346554 4466
Q ss_pred EEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-C
Q 035500 498 LVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM-H 576 (606)
Q Consensus 498 LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g-H 576 (606)
.++.-.++.+.+||..+ .+.+.++.....-+.++ +++..++.+..++.|.++|..+.+.+..++-+ +
T Consensus 109 y~ltw~~~~v~V~D~~T----------l~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~ 176 (268)
T 3nok_A 109 YQLTWTEGLLFTWSGMP----------PQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR 176 (268)
T ss_dssp EEEESSSCEEEEEETTT----------TEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred EEEEccCCEEEEEECCc----------CcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC
Confidence 66666899999999998 34566666433334444 46777777767899999999999887777631 1
Q ss_pred C---CCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 577 R---EPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 577 ~---~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
. ..++.+.|. +| .+++..-.+..|
T Consensus 177 g~~v~~lNeLe~~-dG-~lyanvw~s~~I 203 (268)
T 3nok_A 177 GQPVELINELECA-NG-VIYANIWHSSDV 203 (268)
T ss_dssp TEECCCEEEEEEE-TT-EEEEEETTCSEE
T ss_pred CcccccccccEEe-CC-EEEEEECCCCeE
Confidence 1 245777777 44 577766444433
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0003 Score=72.67 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=58.3
Q ss_pred ceeEEEccc-cchhcccc--ccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhh
Q 035500 126 SCHVLILRA-TNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLME 202 (606)
Q Consensus 126 ~~~~~~~~~-~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~ 202 (606)
+=+.|+|++ |+|..+.. ++.+.+|++|+|. +|.|+.+..+-|..||+|+.|.|.+|++..+-.. .+..++ |++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~~~~~-L~~ 107 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK--TVQGLS-LQE 107 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST--TTCSCC-CCE
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECC-CCccceeCHHHhcCCcCCCEEeCCCCccceeCHH--HcccCC-ceE
Confidence 356788885 88888863 7788888999998 7788888888888889999999988888766322 222333 777
Q ss_pred hhhce
Q 035500 203 LRFQM 207 (606)
Q Consensus 203 l~~~~ 207 (606)
|.+.+
T Consensus 108 l~l~~ 112 (347)
T 2ifg_A 108 LVLSG 112 (347)
T ss_dssp EECCS
T ss_pred EEeeC
Confidence 76554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.042 Score=57.05 Aligned_cols=151 Identities=9% Similarity=0.043 Sum_probs=98.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|++.++.+..+-...+.|+.++...+....... .......++++.+.++.++++-+..+.|.+.+.....
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 149 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 149 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe--CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence 67889998566566666678899999988655433222 2223467888887555666777778899999987621
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCC-CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYS-KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~D-g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...... .-.....+++.|.+. ++++-... +.|..+++..... ..+....-..-+.++|+|.+..++.+-
T Consensus 150 -------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 150 -------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp -------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred -------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 112222 234478999999765 45555555 7888888874332 233212234578999999888888877
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
+..+.|.
T Consensus 222 ~~~~~I~ 228 (349)
T 3v64_C 222 AKHHVIE 228 (349)
T ss_dssp TTTTEEE
T ss_pred CCCCEEE
Confidence 6666554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0044 Score=65.60 Aligned_cols=158 Identities=9% Similarity=-0.137 Sum_probs=100.5
Q ss_pred EEEEcCCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeccCCC-----CCEEEEEEeeCCCCEEEEEEC--C
Q 035500 442 QFEYNPSNPSLMAFGT----------LDGEVIVINHENGNVACYIPSIGGT-----NSVLGLCWLKKYPSKLVAGSD--S 504 (606)
Q Consensus 442 slafsP~dg~~LaSGs----------~DGtVrIWDi~tg~~v~~~~~~gH~-----~~V~~L~fsp~~~~~LaSgS~--D 504 (606)
.++++| ++++++++. .+++|.+||..+++.+..+..-+.. .....++++| ++++++.+.. +
T Consensus 69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~ 146 (368)
T 1mda_H 69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSS 146 (368)
T ss_dssp EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSS
T ss_pred ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEccCCC
Confidence 578999 888888876 3789999999999999887642111 2355788998 5566666653 4
Q ss_pred CeEEE--EeCCC------CC----------------CC-------ccc---------------c-cCCcc----------
Q 035500 505 GCVRL--FDLNH------IP----------------PK-------VAD---------------A-RGNSS---------- 527 (606)
Q Consensus 505 gtIkl--WDl~~------~~----------------~~-------~~~---------------l-~~~~~---------- 527 (606)
..+.+ ||..+ +. .. ... + .+..|
T Consensus 147 ~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~ 226 (368)
T 1mda_H 147 AAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV 226 (368)
T ss_dssp CEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred CeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEE
Confidence 56888 87732 00 00 000 0 00000
Q ss_pred ------eEEeecC--C----------------------CeEEEEEccCCCEEEEE-e---C-----CCcEEEEECCCCce
Q 035500 528 ------VATYYDF--E----------------------QLTSVHVNSTDDQFLAS-G---Y-----SKNVALYDINTEKP 568 (606)
Q Consensus 528 ------i~t~~~~--~----------------------~V~sV~~sp~g~~LaSg-s---~-----Dg~I~IWDlrt~k~ 568 (606)
+..+... . ....+.++|+++.++.+ . . ++.+.+||+.+.+.
T Consensus 227 ~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v 306 (368)
T 1mda_H 227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT 306 (368)
T ss_dssp ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE
T ss_pred EEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE
Confidence 1001100 0 00116789998866654 3 2 23566999999999
Q ss_pred eEEEcCCCCCCeEEEEEeCCCCeEEEEEe-CCCeEE
Q 035500 569 LQLFTDMHREPINVAKFSHHSPLCLLLLH-LTTMSR 603 (606)
Q Consensus 569 v~~l~~gH~~~I~sV~fsP~g~~LLaTgS-~DgtIR 603 (606)
+..++.+ ...+.++|+|++++++++.. .++.|.
T Consensus 307 v~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 307 SGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp EECCEEE--EEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred EEEEECC--CCcceEEECCCCCEEEEEccCCCCeEE
Confidence 8888743 36889999999998888888 577764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.029 Score=55.06 Aligned_cols=137 Identities=8% Similarity=0.055 Sum_probs=87.2
Q ss_pred eeEEEEcCCCCCEEEEEeC---CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL---DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~---DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
+..++++| ++..+..+.. .+.|..++..... ...+.. ..-....+++++++++.++++-...+.|..+|....
T Consensus 124 P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~- 199 (267)
T 1npe_A 124 PRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP- 199 (267)
T ss_dssp EEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCC-CEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-
T ss_pred ccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCC-cEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-
Confidence 67889999 5445544443 4788888876432 222211 223457899999855455566677789999998752
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
..............++.. .+.++++....+.|..+|..+++.+..+..+.....+.+++.|++.
T Consensus 200 ---------~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 200 ---------GRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ---------EEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred ---------ceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 111222222334566654 3445555556789999999999988888743333567888888764
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00093 Score=73.71 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=14.9
Q ss_pred cCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 170 CMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 170 ~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
.+|+|+.|.+.++.+..+- ..+.++++|++|.+
T Consensus 218 ~~~~L~~L~L~~~~~~~l~---~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELV---GFFKAAANLEEFCG 250 (592)
T ss_dssp HCTTCCEEECSSCBGGGGH---HHHHHCTTCCEEEE
T ss_pred hCCCCcEEeccCccHHHHH---HHHhhhhHHHhhcc
Confidence 4455555555554444331 23344444444443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.13 Score=51.29 Aligned_cols=139 Identities=12% Similarity=0.010 Sum_probs=91.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
...+.|++ +.+..+.+.+| .|+++|.++++......+..+ -.--++... +.......-.++.+.+||..+
T Consensus 23 tqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~t--- 94 (243)
T 3mbr_X 23 TEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAW--RDRLIQLTWRNHEGFVYDLAT--- 94 (243)
T ss_dssp EEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEESSSSEEEEEETTT---
T ss_pred cccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEe--CCEEEEEEeeCCEEEEEECCc---
Confidence 55678876 45566666654 899999999999987765332 122345544 445555566789999999988
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-CC---CCeEEEEEeCCCCeEE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM-HR---EPINVAKFSHHSPLCL 593 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g-H~---~~I~sV~fsP~g~~LL 593 (606)
.+.+.++.....-..++ +++..++.+..++.|.++|..+.+.+..++-+ +. ..++.+.|. +| .++
T Consensus 95 -------l~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~ly 163 (243)
T 3mbr_X 95 -------LTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-ELL 163 (243)
T ss_dssp -------TEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred -------CcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-EEE
Confidence 34566666433334554 45665555556899999999999887777632 11 345667765 33 466
Q ss_pred EEEe
Q 035500 594 LLLH 597 (606)
Q Consensus 594 aTgS 597 (606)
+..-
T Consensus 164 anvw 167 (243)
T 3mbr_X 164 ANVW 167 (243)
T ss_dssp EEET
T ss_pred EEEC
Confidence 6653
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00057 Score=71.03 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=62.6
Q ss_pred ceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 126 SCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
.=+.|+|+.|.|+.+. .+....+|.+|.|..+|.++.|+++.|..|++|+.|.|.+|+|..+-. .++.+|++|+.|.
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARS 232 (350)
T ss_dssp SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTT
T ss_pred hhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhcc
Confidence 3567999999999886 344668999999977899999999999999999999999999998843 3355555555444
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00061 Score=70.29 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=65.7
Q ss_pred EEEcccc-chhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 129 VLILRAT-NIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 129 ~~~~~~~-~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.++++++ ++..+..++.+.+|.+|+|..+|.|+.++++-|..|++|+.|.|.+|++..+- -.++..|++|++|.+..
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--PDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC--TTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC--HHHhcCCcCCCEEeCCC
Confidence 3677887 88888778889999999999339999999999999999999999999988762 23678899999998665
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.11 Score=52.82 Aligned_cols=151 Identities=7% Similarity=-0.061 Sum_probs=94.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC----CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN----GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t----g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+..++|++.++.+..+-..++.|..++... ......+. ..-....++++.+.++.+.++-...+.|.+.|....
T Consensus 32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe--CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 678899985555666666679999999875 22222221 222346788888645555666677889999998752
Q ss_pred CCCcccccCCcceEEee-cCCCeEEEEEccCCCEEE-EEeCC-CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFL-ASGYS-KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~La-Sgs~D-g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
....... .......+++.|.+..++ +.... +.|...++... ....+....-...+.++++|++..+
T Consensus 110 ----------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 110 ----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp ----------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEE
T ss_pred ----------ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEE
Confidence 1111222 234578999999766444 44333 68888888643 3333321233567899999988888
Q ss_pred EEEEeCCCeEE
Q 035500 593 LLLLHLTTMSR 603 (606)
Q Consensus 593 LaTgS~DgtIR 603 (606)
+.+-+..+.|.
T Consensus 179 Y~~D~~~~~I~ 189 (316)
T 1ijq_A 179 YWVDSKLHSIS 189 (316)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCeEE
Confidence 87776665554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00064 Score=68.97 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=61.7
Q ss_pred ceeEEEccccchhcccccc----ccccccEEecccCCCcccccc-cccccCccccEEEcccccccchhhh-----hHHhh
Q 035500 126 SCHVLILRATNIRKLNMVG----RFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMCLSMCETRIVNLWTT-----TAAIS 195 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~----~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~l~~~~~~~~~l~~~-----~~~l~ 195 (606)
.-++|+|++|+|..+..++ .|++|++|+|. +|.|+++.+ +-+..+ +|+.|+|.+|.+..-+.. ...+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls-~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS-GNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECT-TSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECC-CCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHH
Confidence 5788999999999987655 79999999999 999999854 333334 999999999998753221 24678
Q ss_pred cCCchhhhhhc
Q 035500 196 KLPYLMELRFQ 206 (606)
Q Consensus 196 ~~~~l~~l~~~ 206 (606)
.||+|+.|..+
T Consensus 249 ~~P~L~~LDg~ 259 (267)
T 3rw6_A 249 RFPKLLRLDGH 259 (267)
T ss_dssp HCTTCCEESSC
T ss_pred HCcccCeECCc
Confidence 89999998744
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.047 Score=57.53 Aligned_cols=151 Identities=8% Similarity=0.009 Sum_probs=98.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|++.++.++.+-...+.|+.|+...+.....+. .......++++.+.++.++++-+..+.|.+.+....
T Consensus 118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~---- 191 (386)
T 3v65_B 118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---- 191 (386)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC--SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC----
T ss_pred cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe--CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC----
Confidence 67889998566666666678899999988665433322 222345678888755566666677788888887652
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEE-EEEeCC-CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQF-LASGYS-KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~L-aSgs~D-g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
....... .......|++.|.+..+ ++-... +.|..+++.......... ..-...+.++|+|.+..++.+-
T Consensus 192 ------~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 192 ------HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp ------SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEEGGGTEEEEEE
T ss_pred ------ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCeeeEEEeCCCCEEEEEE
Confidence 1112222 23457899999877644 444444 788888887543333333 2334578999999888888877
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
+..+.|.
T Consensus 265 ~~~~~I~ 271 (386)
T 3v65_B 265 AKHHVIE 271 (386)
T ss_dssp TTTTEEE
T ss_pred CCCCEEE
Confidence 7666654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00092 Score=63.40 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=67.3
Q ss_pred HHHHHHHhhccceEEEccCc-cccchHHHhhcc---CCCceeEEEccccchhccc------cccccccccEEecccCCCc
Q 035500 91 IMSLMHAIDQKLRVVDLSNI-TLRNDNLLDLCQ---VGSSCHVLILRATNIRKLN------MVGRFMHLNTLSLDFCSSL 160 (606)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~------~~~~~~~l~tl~l~~~~~~ 160 (606)
++.-+-+-+..|+.++|+++ .+|.+.++.|+. .--.-++|+|+.|+|..-+ .+.....|++|+|. .|.|
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~-~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE-SNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC-SSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc-CCcC
Confidence 33333344667777777776 776665555543 2334456777777765422 22334567777887 6677
Q ss_pred cccc----ccccccCccccEEEc--ccccccchh--hhhHHhhcCCchhhhhhce
Q 035500 161 ASLH----EDCFSCMPYLMCLSM--CETRIVNLW--TTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 161 ~~~~----~~~~~~~p~l~~l~~--~~~~~~~l~--~~~~~l~~~~~l~~l~~~~ 207 (606)
+.-. .......+.|+.|.| .+|+|..-- .-..+|.+.++|++|.+..
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 6521 122445667888888 667776521 1124556667777777554
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00066 Score=71.24 Aligned_cols=120 Identities=12% Similarity=0.049 Sum_probs=64.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+..+++|+.||.|+.||.++|+....+. .+. ...++| .+..+++++.|+.|..||..+++. +-
T Consensus 92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~--~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~----------~W 154 (369)
T 2hz6_A 92 DGILYMGKKQDIWYVIDLLTGEKQQTLS--SAF----ADSLSP-STSLLYLGRTEYTITMYDTKTREL----------RW 154 (369)
T ss_dssp ---CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSSC----------CC
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEec--CCC----cccccc-cCCEEEEEecCCEEEEEECCCCCE----------EE
Confidence 4577888999999999999999887654 222 134556 557889999999999999987532 11
Q ss_pred EeecCCCeEEEEEccCC---CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE-EEEeCCC
Q 035500 530 TYYDFEQLTSVHVNSTD---DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV-AKFSHHS 589 (606)
Q Consensus 530 t~~~~~~V~sV~~sp~g---~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s-V~fsP~g 589 (606)
.+... ......+.++. ..+++++.||.+..||.++++.+..+. ...++.. ..+++++
T Consensus 155 ~~~~~-~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 155 NATYF-DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN--YASPVVAFYVWQREG 215 (369)
T ss_dssp EEEEE-EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSS
T ss_pred eEecc-cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec--CCCceEEEEEecCCc
Confidence 11100 01112223321 567778899999999999999988777 2344433 3344444
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=96.69 E-value=0.02 Score=60.91 Aligned_cols=111 Identities=14% Similarity=-0.021 Sum_probs=78.7
Q ss_pred EEEcCCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeccC-----CCCCEEEEEEeeCCCCEEEEEEC--CC
Q 035500 443 FEYNPSNPSLMAFGT----------LDGEVIVINHENGNVACYIPSIG-----GTNSVLGLCWLKKYPSKLVAGSD--SG 505 (606)
Q Consensus 443 lafsP~dg~~LaSGs----------~DGtVrIWDi~tg~~v~~~~~~g-----H~~~V~~L~fsp~~~~~LaSgS~--Dg 505 (606)
++++| +++++++++ .++.|.+||..+++.+..+..-+ .......+.++| ++++++.+.. ++
T Consensus 83 va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~ 160 (386)
T 3sjl_D 83 PVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAP 160 (386)
T ss_dssp EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSC
T ss_pred EEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCC
Confidence 88999 888887765 36789999999999888776422 012456789999 5677766653 68
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCC-Cce
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINT-EKP 568 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt-~k~ 568 (606)
+|.++|..+. +.+.++..... ..+.|.+ ..+++.+.||++.+.++.+ ++.
T Consensus 161 ~VsVID~~t~----------~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 161 AVGVVDLEGK----------AFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp EEEEEETTTT----------EEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred eEEEEECCCC----------cEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 9999999983 44555543221 1223444 6777888899999999986 554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.057 Score=54.14 Aligned_cols=155 Identities=10% Similarity=0.139 Sum_probs=99.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|+|..+.+.++...++.|...|.. ++....+.+.+ ....-+|++.+ ++.++++.-.++.+.++++..... .
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~-i 104 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSE-V 104 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCC-E
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCe-e
Confidence 77899999555566678889999999998 88888776644 34588899986 445556655677888888876421 0
Q ss_pred ccccCCcceEEe-----ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECC---CCceeEEEc------CCCCCCeEEEEE
Q 035500 520 ADARGNSSVATY-----YDFEQLTSVHVNSTDDQFLASGYSKNVALYDIN---TEKPLQLFT------DMHREPINVAKF 585 (606)
Q Consensus 520 ~~l~~~~~i~t~-----~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr---t~k~v~~l~------~gH~~~I~sV~f 585 (606)
.. .....+ ........++|.|.++.++++.......+|.+. .+..+..+. ..+...+..+++
T Consensus 105 ~~----~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 105 KI----LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp EE----EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred ee----eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 00 001111 122337899999998766666554444444443 112223221 123456789999
Q ss_pred eCCCCeEEEEEeCCCeE
Q 035500 586 SHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtI 602 (606)
+|...++++.+.....+
T Consensus 181 dp~tg~lliLS~~s~~L 197 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRAL 197 (255)
T ss_dssp ETTTTEEEEEETTTTEE
T ss_pred cCCCCeEEEEECCCCeE
Confidence 99988888877776654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.021 Score=65.60 Aligned_cols=144 Identities=10% Similarity=0.113 Sum_probs=88.0
Q ss_pred eeEEEEc-CCCCCEEEEEeC-CC----cEEEEECCCC-ceEE-EEeccCCCCCEEEEEEeeCCCCEEEEEECC-----Ce
Q 035500 440 PRQFEYN-PSNPSLMAFGTL-DG----EVIVINHENG-NVAC-YIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-----GC 506 (606)
Q Consensus 440 V~slafs-P~dg~~LaSGs~-DG----tVrIWDi~tg-~~v~-~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-----gt 506 (606)
+...+|| | ||+++|.+.. +| +|+++|+.++ +.+. .+. . ...+++|+|+ +..|+..+.| ..
T Consensus 176 ~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~---~~~~~~WspD-g~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 176 VMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--G---TNGEIVWGPD-HTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--E---ECSCCEECSS-TTEEEEEEECTTCCEEE
T ss_pred EeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--C---ceeeEEEecC-CCEEEEEEECCCCCCCE
Confidence 6678899 9 9998886543 23 5999999988 6321 111 1 1346789994 4556555554 25
Q ss_pred EEEEeCCCCCCCcccccCCcceEEeec--CCCeEEEEEccCCCEEEEEeC---CCcEEEEECCCCc-ee--EEEcCCCCC
Q 035500 507 VRLFDLNHIPPKVADARGNSSVATYYD--FEQLTSVHVNSTDDQFLASGY---SKNVALYDINTEK-PL--QLFTDMHRE 578 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t~~~--~~~V~sV~~sp~g~~LaSgs~---Dg~I~IWDlrt~k-~v--~~l~~gH~~ 578 (606)
|..|++.+.. ......+.. .....++.|+|+|++++..+. ...|.++|+.++. .. ..+......
T Consensus 249 v~~~~lgt~~--------~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 249 VWRHVMGKLQ--------SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp EEEEETTSCG--------GGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred EEEEECCCCc--------hhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 7777776531 112233332 233678899999997765542 3568889998763 23 444323455
Q ss_pred CeEEEEEeCCCCeEEEEEeCC
Q 035500 579 PINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~D 599 (606)
..+++.|+. +..++..+..+
T Consensus 321 ~~~s~~~~~-g~~l~~~t~~~ 340 (751)
T 2xe4_A 321 VRYDVQMHG-TSHLVILTNEG 340 (751)
T ss_dssp CCEEEEEET-TTEEEEEECTT
T ss_pred ceEEEeeee-CCEEEEEeCCC
Confidence 667776654 45555555544
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0017 Score=66.70 Aligned_cols=109 Identities=14% Similarity=0.095 Sum_probs=81.3
Q ss_pred HHHHHHHHhhccceEEEccCccccchHHHhhccCCC-ceeEEEccccchhccc--ccccccccc-EEecccCCCcccccc
Q 035500 90 YIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGS-SCHVLILRATNIRKLN--MVGRFMHLN-TLSLDFCSSLASLHE 165 (606)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~--~~~~~~~l~-tl~l~~~~~~~~~~~ 165 (606)
.....++..-.+|+.++|.++. ...+.+-+..|. +=+.|+|.+| +..++ .|..+.+|+ +|.|. + +|+.|++
T Consensus 216 ~~~~~l~~~~~~L~~l~L~~n~--i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~-~-~l~~I~~ 290 (329)
T 3sb4_A 216 ADFKLIRDYMPNLVSLDISKTN--ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP-A-SVTAIEF 290 (329)
T ss_dssp HHHHHHHHHCTTCCEEECTTBC--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC-T-TCCEECT
T ss_pred HHHHHHHHhcCCCeEEECCCCC--cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc-c-cceEEch
Confidence 3445566667899999999853 334444444444 6678999887 77776 456677788 88887 4 9999999
Q ss_pred cccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 166 DCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 166 ~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
++|..+++|+.|.+.+|+|..+- -.|...+++|++|.+
T Consensus 291 ~aF~~c~~L~~l~l~~n~i~~I~--~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDKITTLG--DELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTCTTEEEEEECSSCCCEEC--TTTTCTTCCCCEEEC
T ss_pred hhhhCCccCCEEEeCCCccCccc--hhhhcCCcchhhhcc
Confidence 99999999999999888888773 246777888887753
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.034 Score=62.00 Aligned_cols=138 Identities=16% Similarity=0.060 Sum_probs=85.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCC-----------CCE--------------------------EEEEEeeCC
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGT-----------NSV--------------------------LGLCWLKKY 494 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~-----------~~V--------------------------~~L~fsp~~ 494 (606)
.++.++.+|.+.++|.++|+.+...+..... .++ ..++++|+
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~- 396 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE- 396 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT-
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC-
Confidence 6778999999999999999988766542200 111 13466763
Q ss_pred CCEEEEEE-------------------------------------CCCeEEEEeCCCCCCCcccccCCcceEEeecCCCe
Q 035500 495 PSKLVAGS-------------------------------------DSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQL 537 (606)
Q Consensus 495 ~~~LaSgS-------------------------------------~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V 537 (606)
..+++..+ .+|.|..||..+++ .+-.+....++
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~----------~~W~~~~~~~~ 466 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK----------AKWTKWEKFAA 466 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC----------EEEEEEESSCC
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC----------EEEEecCCCCc
Confidence 34555443 34677778877642 22222222222
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 538 TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 538 ~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
.+......+..++.++.|+.++.||.++++.+..++.++...-..+.+..++..++++.+..+
T Consensus 467 ~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G~~ 529 (571)
T 2ad6_A 467 WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVG 529 (571)
T ss_dssp CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred cceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEECCCC
Confidence 222223346778889999999999999999998888543222233456677775555554443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.55 E-value=0.29 Score=51.66 Aligned_cols=151 Identities=9% Similarity=-0.051 Sum_probs=96.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG----NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg----~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+..++|++.++.+..+-...+.|+.+++... .....+. .......++++.+.++.+.++-+..+.|.+.++...
T Consensus 114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 6788999955555555566788999998652 1222221 234567899998755566666677889998888762
Q ss_pred CCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEe-C-CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASG-Y-SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs-~-Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
....... .......|++.|.+..++.+. . .+.|...++.......... ..-...+.++++|.+..|
T Consensus 192 ----------~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 192 ----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp ----------SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTEE
T ss_pred ----------ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE-CCCCceEEEEEEeCCCEE
Confidence 1222222 334578999999766544443 3 4788888887544333333 233567899999988888
Q ss_pred EEEEeCCCeEE
Q 035500 593 LLLLHLTTMSR 603 (606)
Q Consensus 593 LaTgS~DgtIR 603 (606)
+.+-+....|.
T Consensus 261 Y~aD~~~~~I~ 271 (400)
T 3p5b_L 261 YWVDSKLHSIS 271 (400)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCEEE
Confidence 77766655554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.064 Score=57.58 Aligned_cols=153 Identities=8% Similarity=0.011 Sum_probs=93.6
Q ss_pred ceeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC---Ce-EEEEeCC
Q 035500 439 RPRQFEYNPS-NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS---GC-VRLFDLN 513 (606)
Q Consensus 439 rV~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D---gt-IklWDl~ 513 (606)
.+..++|+|. +...|..+...+.|+.+|..++...... +......+++|+++ +.++++.... .. +...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~---~~~~~P~giavd~d-G~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT---TNIGQCADVNFTLN-GDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC---CCCSCEEEEEECTT-CCEEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee---cCCCCccEEEECCC-CCEEEEcCCCCcccceEEEEECC
Confidence 3678899983 2344555544489999999877765433 33456899999984 4555554321 12 2222221
Q ss_pred CCCCCcccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCe
Q 035500 514 HIPPKVADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
.. ......+........++++| ++.++++-..++.|+.+|..++.. ...+..+....-..++|+|++.+
T Consensus 216 ~~---------~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 216 SG---------FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp GT---------TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred CC---------eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 11 00011222233456788999 667777777778999999987766 23333222233457999999998
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
++++-.....|+.
T Consensus 287 LYvad~~~~~I~~ 299 (433)
T 4hw6_A 287 AYIIYNGKHCIYR 299 (433)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEeCCCCEEEE
Confidence 8888777666653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0039 Score=65.98 Aligned_cols=90 Identities=14% Similarity=-0.035 Sum_probs=66.9
Q ss_pred cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------CCCeEEEEeCCCCCCCcccccCCcceEE
Q 035500 461 EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----------DSGCVRLFDLNHIPPKVADARGNSSVAT 530 (606)
Q Consensus 461 tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----------~DgtIklWDl~~~~~~~~~l~~~~~i~t 530 (606)
+|.++|..+++.+..+.. |.. + ++.++|+ +..++.+. .+++|.+||..+. ..+.+
T Consensus 47 ~vsvID~~t~~v~~~i~v-G~~-P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T~----------~vv~~ 111 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLG-AFL-S--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTF----------LPIAD 111 (368)
T ss_dssp EEEEEETTTTEEEEEEEE-CTT-C--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTC----------CEEEE
T ss_pred eEEEEECCCCeEEEEEeC-CCC-C--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCC----------CEEEE
Confidence 889999999999998874 433 4 7999995 45555554 4789999999984 34555
Q ss_pred eecC--------CCeEEEEEccCCCEEEEEeC--CCcEEE--EECCC
Q 035500 531 YYDF--------EQLTSVHVNSTDDQFLASGY--SKNVAL--YDINT 565 (606)
Q Consensus 531 ~~~~--------~~V~sV~~sp~g~~LaSgs~--Dg~I~I--WDlrt 565 (606)
+... ..-..+.++|+|++++.+.. +..+.+ +|+.+
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 5422 22457889999998887764 467888 99987
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0013 Score=62.66 Aligned_cols=85 Identities=8% Similarity=0.069 Sum_probs=65.1
Q ss_pred CCCceeEEEccccchhcc--ccccccccccEEecccCCCcccccccccccC----ccccEEEcccc-cccchhhhhHHhh
Q 035500 123 VGSSCHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCM----PYLMCLSMCET-RIVNLWTTTAAIS 195 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~----p~l~~l~~~~~-~~~~l~~~~~~l~ 195 (606)
.++.=+.|||+++.|..- ..+..+++|++|+|.+|..||--.-.-.+.+ |+|+.|.+.++ +|++ ..+++|.
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~ 136 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALH 136 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGG
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHh
Confidence 455567788887776553 3456899999999999999987543334444 68999999885 5876 3568899
Q ss_pred cCCchhhhhhceec
Q 035500 196 KLPYLMELRFQMCL 209 (606)
Q Consensus 196 ~~~~l~~l~~~~~~ 209 (606)
++|+|++|.+..|+
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 99999999988876
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.065 Score=59.89 Aligned_cols=84 Identities=12% Similarity=0.011 Sum_probs=51.2
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
+|.|.-||..+++. +=......++..-.....+.+++.|+.|+.++.||.++|+.+..++.+......-+
T Consensus 465 ~G~l~A~D~~tG~~----------~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~ 534 (582)
T 1flg_A 465 VGSLRAMDPVSGKV----------VWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPI 534 (582)
T ss_dssp SEEEEEECTTTCCE----------EEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred cceEEEEECCCCCE----------EEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCce
Confidence 56777888777421 11122222222111122467888899999999999999999998884332222336
Q ss_pred EEeCCCCeEEEEEe
Q 035500 584 KFSHHSPLCLLLLH 597 (606)
Q Consensus 584 ~fsP~g~~LLaTgS 597 (606)
.|..+|+..+++.+
T Consensus 535 ~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 535 TWEQDGEQYLGVTV 548 (582)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEc
Confidence 77777775555443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.046 Score=58.91 Aligned_cols=119 Identities=10% Similarity=0.144 Sum_probs=81.2
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCceE--EEEeccC--------CCCCEEEEEEeeCCCCEEEEEE---------C
Q 035500 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVA--CYIPSIG--------GTNSVLGLCWLKKYPSKLVAGS---------D 503 (606)
Q Consensus 443 lafsP~dg~~LaSGs~DGtVrIWDi~tg~~v--~~~~~~g--------H~~~V~~L~fsp~~~~~LaSgS---------~ 503 (606)
+.|.| ++..++..+..|+|.+.|...+... ..+.... .......++++|++...+++.. .
T Consensus 270 ~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~ 348 (426)
T 3c75_H 270 PAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAA 348 (426)
T ss_dssp CEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSC
T ss_pred eeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCC
Confidence 35788 7777777778899999998654432 1111100 0111223688885444444432 1
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCC-EEEEEe-CCCcEEEEECCCCceeEEE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDD-QFLASG-YSKNVALYDINTEKPLQLF 572 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~-~LaSgs-~Dg~I~IWDlrt~k~v~~l 572 (606)
+++|.+.|..+ .+.+.++.......++.|+|+++ +++++. .++.|.++|+.+.+.+..+
T Consensus 349 s~~VsVID~~T----------~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 349 SRFVVVLNAET----------GERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEEETTT----------CCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCEEEEEECCC----------CeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 35799999988 34566666555688999999998 888887 5899999999999999887
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0065 Score=68.06 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=96.9
Q ss_pred eEEEEcCCCCCEEEEEeCCC--------------------------------------cEEEEECCC--Cce-EEEEecc
Q 035500 441 RQFEYNPSNPSLMAFGTLDG--------------------------------------EVIVINHEN--GNV-ACYIPSI 479 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DG--------------------------------------tVrIWDi~t--g~~-v~~~~~~ 479 (606)
.-++++| +++++++.+.+. .|.|.|..+ ++. +.+++.
T Consensus 198 d~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv- 275 (595)
T 1fwx_A 198 DNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI- 275 (595)
T ss_dssp CCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-
T ss_pred cceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-
Confidence 3457888 888888888654 477778776 444 444432
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcc-cccCC-cceEEeecCCCeEEEEEccCCCEEEEEeCCCc
Q 035500 480 GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVA-DARGN-SSVATYYDFEQLTSVHVNSTDDQFLASGYSKN 557 (606)
Q Consensus 480 gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~-~l~~~-~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~ 557 (606)
+ ....++.++|++...++++..+.+|.++|+.+...... .+... ..+....-...-..++|+|+|....+.--|++
T Consensus 276 g--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsq 353 (595)
T 1fwx_A 276 A--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQ 353 (595)
T ss_dssp E--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTE
T ss_pred C--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCc
Confidence 2 24678999995433456666889999999986310000 00001 12223333445788999999955556677899
Q ss_pred EEEEECCC----------CceeEEEcCCCCCCe-----EEEEEeCCCCeEEEEEeC
Q 035500 558 VALYDINT----------EKPLQLFTDMHREPI-----NVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 558 I~IWDlrt----------~k~v~~l~~gH~~~I-----~sV~fsP~g~~LLaTgS~ 598 (606)
|..||+.+ .+.+..+. .|..+- ..+.++|+|++++++...
T Consensus 354 V~kwdi~~a~~~~~g~~~~~vi~kid-V~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 354 VVKWNIEDAIRAYAGEKVDPIKDKLD-VHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp EEEEEHHHHHHHHHTCSCCCEEEEEE-CSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred EEEEEhhHhhhhhcccccceeEEEee-cccccccceeccceEeCCCCCEEEEcCCC
Confidence 99999987 45667777 343322 123457999998877543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.1 Score=58.37 Aligned_cols=141 Identities=6% Similarity=0.018 Sum_probs=98.5
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEe--eCCCCEEEEEE------------------CCCeE
Q 035500 449 NPSLMAFGT-LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWL--KKYPSKLVAGS------------------DSGCV 507 (606)
Q Consensus 449 dg~~LaSGs-~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fs--p~~~~~LaSgS------------------~DgtI 507 (606)
||+++.... .+++|.+.|+.+.+....+.. .......++++. | ++.+++.++ .++.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-p~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeC-CCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 566666554 467799999999998875543 333458899984 6 567777774 34578
Q ss_pred EEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC-------------------------------
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK------------------------------- 556 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg------------------------------- 556 (606)
.+.|..+. ..+.+..-...-..++++|+|+++++++.+.
T Consensus 178 tvID~~t~----------~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 178 TAVDADKW----------EVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEEETTTT----------EEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEEECCCC----------eEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 88888873 2333333222345677899999888887553
Q ss_pred -------cEEEEECCC--Cce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 557 -------NVALYDINT--EKP-LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 557 -------~I~IWDlrt--~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
.|.+.|.++ ++. +..++. ......+.++|+|+++++++..+.+|.
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipv--g~~PhGv~~sPDGk~v~V~~~~s~~Vs 302 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVT 302 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEE
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEec--CCCceEEEEcCCCCEEEEeCCCCCeEE
Confidence 588899988 555 556653 235568999999999999988887764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.04 E-value=0.4 Score=49.06 Aligned_cols=151 Identities=6% Similarity=-0.024 Sum_probs=96.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE-EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA-CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v-~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+..++|++.++.+..+-...+.|..++...+... ..+. ..-....++++.+.++.++++-+..+.|.+++.....
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-- 112 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-- 112 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc--
Confidence 5678999856666666667889999998765321 1111 1223467888887555666676778899999987621
Q ss_pred cccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
..... ........+++.|.+..++.+. ..+.|...++.......... ..-..-+.++|+|++..++.+
T Consensus 113 --------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 113 --------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp --------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEE
T ss_pred --------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-CCCCCccEEEEeccCCEEEEE
Confidence 11112 2334578999999766554443 35788888886433222222 223456899999988888877
Q ss_pred EeCCCeEE
Q 035500 596 LHLTTMSR 603 (606)
Q Consensus 596 gS~DgtIR 603 (606)
-+..+.|.
T Consensus 184 D~~~~~I~ 191 (318)
T 3sov_A 184 DAKLNFIH 191 (318)
T ss_dssp ETTTTEEE
T ss_pred ECCCCEEE
Confidence 66666554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.055 Score=61.41 Aligned_cols=84 Identities=8% Similarity=0.054 Sum_probs=52.8
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
+|.|.-||..+++ .+=......+.....+...+.+++.++.|+.++.||.++++.+..++.+..-.-.-+
T Consensus 437 ~g~l~A~D~~tG~----------~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~ 506 (668)
T 1kv9_A 437 SGALLAWDPVKQK----------AAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPM 506 (668)
T ss_dssp EEEEEEEETTTTE----------EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred cceEEEEeCCCCc----------EEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCce
Confidence 4778888888742 222222333333333455688999999999999999999999988874321111334
Q ss_pred EEeCCCCeEEEEEe
Q 035500 584 KFSHHSPLCLLLLH 597 (606)
Q Consensus 584 ~fsP~g~~LLaTgS 597 (606)
.+..+|...++.++
T Consensus 507 ~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 507 TFELAGRQYVAIMA 520 (668)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 55556664454444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.13 Score=52.73 Aligned_cols=132 Identities=8% Similarity=0.009 Sum_probs=86.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+..+..++.+|.+..+|..+|+....... .....+... +..++.++.++.+..+|..+++ ..-
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~----~~~~~~~~~---~~~l~~~~~~g~l~~~d~~tG~----------~~w 301 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKREL----GSVNDFIVD---GNRIYLVDQNDRVMALTIDGGV----------TLW 301 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECC----CCEEEEEEE---TTEEEEEETTCCEEEEETTTCC----------EEE
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccC----CCCCCceEE---CCEEEEEcCCCeEEEEECCCCc----------EEE
Confidence 45788888999999999999998876542 234444433 3578888999999999998753 111
Q ss_pred Eee-c-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE-EEEeCCCCeEEEEEeCCCeEEE
Q 035500 530 TYY-D-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV-AKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 530 t~~-~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s-V~fsP~g~~LLaTgS~DgtIRc 604 (606)
... . ...+..... .+..++.++.+|.+..+|.++++.+..... ....+.. ... . +.. +..++.||.+.+
T Consensus 302 ~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~-~~~~~~~~~~~-~-~~~-l~v~~~~G~l~~ 373 (376)
T 3q7m_A 302 TQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV-DSSGFQTEPVA-A-DGK-LLIQAKDGTVYS 373 (376)
T ss_dssp EECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC-CTTCBCSCCEE-E-TTE-EEEEBTTSCEEE
T ss_pred eecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCcceeCCEE-E-CCE-EEEEeCCCEEEE
Confidence 222 1 111222222 267888899999999999999998877763 2233322 222 2 333 556777887754
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.15 Score=57.88 Aligned_cols=158 Identities=14% Similarity=0.099 Sum_probs=96.7
Q ss_pred EEEEcCCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEeccCCC-------CCEEEEEEeeCCC
Q 035500 442 QFEYNPSNPSLMAFGTLDGE-------------------VIVINHENGNVACYIPSIGGT-------NSVLGLCWLKKYP 495 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGt-------------------VrIWDi~tg~~v~~~~~~gH~-------~~V~~L~fsp~~~ 495 (606)
.++++| +.++++.++.++. |..+|..+|+.+..++...|. .+........ ++
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G 311 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DG 311 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TT
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CC
Confidence 467888 6678888887764 999999999999988765453 2332222222 22
Q ss_pred C---EEEEEECCCeEEEEeCCCCCCCcc------ccc------CCcceE------------Eeec---CCCeEEEEEccC
Q 035500 496 S---KLVAGSDSGCVRLFDLNHIPPKVA------DAR------GNSSVA------------TYYD---FEQLTSVHVNST 545 (606)
Q Consensus 496 ~---~LaSgS~DgtIklWDl~~~~~~~~------~l~------~~~~i~------------t~~~---~~~V~sV~~sp~ 545 (606)
. .++.++.+|.+.++|..+++.... ++. ...++. .+.. ...-..++++|+
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~ 391 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG 391 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence 2 588899999999999888643100 000 000100 0000 000123677777
Q ss_pred CCEEEEE------------------------------------eCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 546 DDQFLAS------------------------------------GYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 546 g~~LaSg------------------------------------s~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
..+++.. ..+|.|.-||+.+++.+...+. ........+...+
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~g 469 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAG 469 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETT
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCC
Confidence 6655532 1247899999999999877763 2333334444556
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
. ++..++.|+.+++
T Consensus 470 g-~vf~g~~dg~l~a 483 (668)
T 1kv9_A 470 N-LVFQGTAAGQMHA 483 (668)
T ss_dssp T-EEEEECTTSEEEE
T ss_pred C-EEEEECCcccchh
Confidence 6 4566788998875
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.25 Score=54.27 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=95.8
Q ss_pred eeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecc-CCCCCEEEEEE-------eeCCCCEEEEEECCC-----
Q 035500 440 PRQFEYNPS-NPSLMAFGTLDGEVIVINHENGNVACYIPSI-GGTNSVLGLCW-------LKKYPSKLVAGSDSG----- 505 (606)
Q Consensus 440 V~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~-gH~~~V~~L~f-------sp~~~~~LaSgS~Dg----- 505 (606)
+..|+|+|. +++++++-...+.|++.|.+++......... +.......++| ++ ++..|+.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCccc
Confidence 567899994 4556666555678999999987776544321 12335899999 88 455555555443
Q ss_pred --eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECC-------CCce-------
Q 035500 506 --CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDIN-------TEKP------- 568 (606)
Q Consensus 506 --tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlr-------t~k~------- 568 (606)
.|.+.+...... .........+..+ .....++++|++ .++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~-~~~~~~~~~v~~~---~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGT-FDDRSDIQLIAAY---KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSC-CSTTSCEEEEEEE---SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCc-eeecccceeeccC---CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 255565332111 0000000122222 234577889954 566677778899999997 5543
Q ss_pred ----e-EEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 569 ----L-QLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 569 ----v-~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
. ..+..+....-+.++|+|++..++++-+....|+-
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k 336 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR 336 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence 1 22332234456799999999977777666666653
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.075 Score=52.78 Aligned_cols=140 Identities=11% Similarity=0.066 Sum_probs=88.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.++.+.+ ++.+. .|+ +.|..|| .+++...... .....+.++...+ + ..+..++.++.+..+|...
T Consensus 179 ~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~~~~~~--~~~~~~~~~~~~~-~-g~l~v~t~~~gl~~~~~~g----- 244 (330)
T 3hxj_A 179 TSAASIGK-DGTIY-FGS--DKVYAIN-PDGTEKWNFY--AGYWTVTRPAISE-D-GTIYVTSLDGHLYAINPDG----- 244 (330)
T ss_dssp CSCCEECT-TCCEE-EES--SSEEEEC-TTSCEEEEEC--CSSCCCSCCEECT-T-SCEEEEETTTEEEEECTTS-----
T ss_pred eeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcEEEEEc--cCCcceeceEECC-C-CeEEEEcCCCeEEEECCCC-----
Confidence 44455665 66544 444 7799999 7777665544 3345577777765 3 3577788888888887433
Q ss_pred ccccCCcceEEeecCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFE-QLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~-~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..+.... .+.++...+++ .+..++.++.+..+|. +++.+..+. .....+.++...+++. +..|+.
T Consensus 245 ------~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~-~~~~~~~~~~~d~~g~--l~~gt~ 313 (330)
T 3hxj_A 245 ------TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE-TGSWIIATPVIDENGT--IYFGTR 313 (330)
T ss_dssp ------CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTCC--EEEECT
T ss_pred ------CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE-cCCccccceEEcCCCE--EEEEcC
Confidence 1222333222 23444454444 5566777889999996 677776666 3456677788877776 445788
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
+|.+++
T Consensus 314 ~G~~~~ 319 (330)
T 3hxj_A 314 NGKFYA 319 (330)
T ss_dssp TSCEEE
T ss_pred CCeEEE
Confidence 888765
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.087 Score=52.34 Aligned_cols=130 Identities=9% Similarity=0.066 Sum_probs=84.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
...+..|+.+|.|..+|.. ++...... .+...+.++...+ + ..++.++.++.|..||.. +. ...
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~--~~~~~~~~~~~~~-~-g~l~vgt~~~~l~~~d~~-g~----------~~~ 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFK--TKKAIYATPIVSE-D-GTIYVGSNDNYLYAINPD-GT----------EKW 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEE--CSSCCCSCCEECT-T-SCEEEECTTSEEEEECTT-SC----------EEE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEc--CCCceeeeeEEcC-C-CEEEEEcCCCEEEEECCC-CC----------EeE
Confidence 3577788889999999988 77665544 3333455555554 3 347778888999999987 32 122
Q ss_pred Eeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 530 TYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 530 t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
.+.. ...+.++...+++.+++++ +.+..|| .+++...... .....+.++...+++. +++ ++.++.+
T Consensus 171 ~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g~-l~v-~t~~~gl 237 (330)
T 3hxj_A 171 RFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFY-AGYWTVTRPAISEDGT-IYV-TSLDGHL 237 (330)
T ss_dssp EEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEEC-CSSCCCSCCEECTTSC-EEE-EETTTEE
T ss_pred EEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEc-cCCcceeceEECCCCe-EEE-EcCCCeE
Confidence 2222 3336666666667755544 8899999 7777776666 3556788888888775 444 4444433
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.83 Score=45.64 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=86.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-C-eEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-G-CVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-g-tIklWDl~~~~~ 517 (606)
+..++|+| +++++++-..+++|..||... .....+.. .....++++.+ ++.++++.... + .|..+|...+..
T Consensus 34 pegia~~~-~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 34 LENLASAP-DGTIFVTNHEVGEIVSITPDG-NQQIHATV---EGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTTC-CEEEEEEC---SSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred cceEEECC-CCCEEEEeCCCCeEEEECCCC-ceEEEEeC---CCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeE
Confidence 66789999 888777777899999999875 33333332 24588999998 45655554433 2 355566554311
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEc--------CCCCCCeEEEEEeCC
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFT--------DMHREPINVAKFSHH 588 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~--------~gH~~~I~sV~fsP~ 588 (606)
..+...........++..+.+..+++-..++.|..+|..+++. +.... .+.-...+.+ +|+
T Consensus 108 --------~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 108 --------ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp --------EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred --------EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 1111111112234555544444555555678999999876532 21110 0111234555 788
Q ss_pred CCeEEEEEeCCCeEE
Q 035500 589 SPLCLLLLHLTTMSR 603 (606)
Q Consensus 589 g~~LLaTgS~DgtIR 603 (606)
+.+++++-+..+.|.
T Consensus 178 g~~lyv~d~~~~~I~ 192 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLL 192 (306)
T ss_dssp TTEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCEEE
Confidence 888888877776664
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.28 Score=50.16 Aligned_cols=111 Identities=10% Similarity=0.006 Sum_probs=74.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCC-------CCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGG-------TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVAD 521 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH-------~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~ 521 (606)
.+..+.+++.+|.|..||.++|+.......... ...+.+.... .+..++.++.++.|..+|..+++
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~----- 124 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGT----- 124 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCC-----
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCC-----
Confidence 346888888999999999999999877664221 1223222222 23678889999999999998753
Q ss_pred ccCCcceEEeecCCCe-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 522 ARGNSSVATYYDFEQL-TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 522 l~~~~~i~t~~~~~~V-~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
.+-.......+ ...... +..++.++.++.+..+|.++++.+....
T Consensus 125 -----~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 125 -----VAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVN 170 (376)
T ss_dssp -----EEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -----EEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence 12122222111 111121 5678888899999999999999887776
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.19 Score=57.73 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=86.0
Q ss_pred eEEEEcCCCCCEEEEEeCC-----CcEEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEEE---CCCeEEEE
Q 035500 441 RQFEYNPSNPSLMAFGTLD-----GEVIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAGS---DSGCVRLF 510 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~D-----GtVrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS---~DgtIklW 510 (606)
..++|+| |++.|+....| ..|+++++.++.. ...+.. .+.....++.|+| ++.+|+..+ ....|.++
T Consensus 224 ~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~ 300 (751)
T 2xe4_A 224 GEIVWGP-DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE-HNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLL 300 (751)
T ss_dssp SCCEECS-STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC-CCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEE
T ss_pred eeEEEec-CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec-CCCceEEEEEECC-CCCEEEEEecCCCCceEEEE
Confidence 4578999 88888777765 3688888877642 222221 2234567889999 556655444 23467778
Q ss_pred eCCCCCCCcccccCCcc-eEEee--cCCCeEEEEEccCCCEEEEEeCC----CcEEEEECCCC-ceeE-EEcCCCCCCeE
Q 035500 511 DLNHIPPKVADARGNSS-VATYY--DFEQLTSVHVNSTDDQFLASGYS----KNVALYDINTE-KPLQ-LFTDMHREPIN 581 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~-i~t~~--~~~~V~sV~~sp~g~~LaSgs~D----g~I~IWDlrt~-k~v~-~l~~gH~~~I~ 581 (606)
|+..+.. .. +..+. ......++.|+..+.+++.+..+ ..|..+|+.++ +... .+. |...+.
T Consensus 301 d~~~~~~--------~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~--~~~~~~ 370 (751)
T 2xe4_A 301 DLRKGNA--------HNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD--HSEDVF 370 (751)
T ss_dssp ESSSCTT--------CCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC--CCSSEE
T ss_pred ECCCCCC--------CceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC--CCCCcE
Confidence 8876311 11 02222 13445667666544455555443 36777777653 2222 333 444333
Q ss_pred EEEEeCCCCeEEEEEeCCCeEEE
Q 035500 582 VAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 582 sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
--.+.+.+.+++++...|+..+.
T Consensus 371 l~~~~~~~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 371 MESIAVRSNYLVVAGRRAGLTRI 393 (751)
T ss_dssp EEEEEECSSEEEEEEEETTEEEE
T ss_pred EEEEEEECCEEEEEEEeCCEEEE
Confidence 33344557788888888886654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0075 Score=56.99 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=83.1
Q ss_pred cCccceeeeccCCCc-ccchhHHHHHHHHh--hccceEEEccCccccchHHHhhcc---CCCceeEEEccccchhc----
Q 035500 70 SFDIEAVDILSKRPC-FLKEEYIMSLMHAI--DQKLRVVDLSNITLRNDNLLDLCQ---VGSSCHVLILRATNIRK---- 139 (606)
Q Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---- 139 (606)
...+..+|+ +.| .+..+-+..+..++ |..|++++|+++.+|.+-...|++ ..-.=+.|+|++|+|..
T Consensus 35 ~~~L~~L~L---~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 35 DPDLEEVNL---NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp CTTCCEEEC---TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred CCCCCEEEe---cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345666776 456 77777776666654 688999999999998877665543 23344679999999887
Q ss_pred --cccccccccccEEec--ccCCCcccccc----cccccCccccEEEcccccccch
Q 035500 140 --LNMVGRFMHLNTLSL--DFCSSLASLHE----DCFSCMPYLMCLSMCETRIVNL 187 (606)
Q Consensus 140 --l~~~~~~~~l~tl~l--~~~~~~~~~~~----~~~~~~p~l~~l~~~~~~~~~l 187 (606)
.+.+..-..|++|+| . .|.|+.-.. ..+...++|+.|.|.+|.|..-
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~-~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQ-SQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCC-SSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHhCCCceEEEecCC-CCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 345556678999999 6 788886432 2345569999999999988644
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.012 Score=64.70 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=31.0
Q ss_pred cccccEEecccCCCccccccccc-ccCccccEEEcccccccchhhhhHHhhcCCchhhhhhceec
Q 035500 146 FMHLNTLSLDFCSSLASLHEDCF-SCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 146 ~~~l~tl~l~~~~~~~~~~~~~~-~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
+++|++|+|. ++.|+...-..+ ..+|+|+.|.+.+|++.. +.-.+.+.++|+|++|.+++|.
T Consensus 455 ~~~L~~L~L~-~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 455 AKKMEMLSVA-FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD-KALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CTTCCEEEEE-SCCSSHHHHHHHHHHCTTCCEEEEESCSCCH-HHHHHTGGGGGGSSEEEEESSC
T ss_pred chhccEeecc-CCCCcHHHHHHHHhcCCCcCEEECcCCCCcH-HHHHHHHHhCCCCCEEeeeCCC
Confidence 4556666666 344543322222 446666666666666521 1111223346666666666654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.64 E-value=1 Score=46.35 Aligned_cols=148 Identities=3% Similarity=-0.092 Sum_probs=92.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-CeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-GCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-gtIklWDl~~~~~~ 518 (606)
+..+++++..+++..+-...+.|.+++........... ..-....+++++|.++.++++-... +.|...++....
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~--~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-- 193 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-- 193 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe--CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--
Confidence 56788988566666666778899999987543322222 3345678999998665556665555 788888876521
Q ss_pred cccccCCcceEEe-e-cCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATY-Y-DFEQLTSVHVNSTDDQFL-ASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~-~-~~~~V~sV~~sp~g~~La-Sgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
...+ . .-..-+.++++|++..++ +-+..+.|..+|+........+. ........+++. +..++.+
T Consensus 194 ---------~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~giav~--~~~ly~t 261 (349)
T 3v64_C 194 ---------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITVF--EDSLYWT 261 (349)
T ss_dssp ---------CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEE--TTEEEEE
T ss_pred ---------cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe-CCCCCceEEEEE--CCEEEEe
Confidence 1111 1 223468999998776554 44556889999987543333333 233456677773 3456666
Q ss_pred EeCCCeEE
Q 035500 596 LHLTTMSR 603 (606)
Q Consensus 596 gS~DgtIR 603 (606)
-...+.|.
T Consensus 262 d~~~~~V~ 269 (349)
T 3v64_C 262 DWHTKSIN 269 (349)
T ss_dssp ETTTTEEE
T ss_pred cCCCCeEE
Confidence 65555543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.7 Score=53.56 Aligned_cols=151 Identities=9% Similarity=-0.049 Sum_probs=96.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG----NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg----~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+..++|++.++.+..+-...+.|+.+++... .....+. .......+|++.+.++.++++-+..+.|.+.++...
T Consensus 426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 6678999856656666667788999998742 2222221 234456788888755566677778889999998762
Q ss_pred CCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEe-CC-CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASG-YS-KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs-~D-g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
....... .-.....|++.|.+..|+.+. .. +.|...++........+. ..-...+.|++++.+..|
T Consensus 504 ----------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 504 ----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRL 572 (791)
T ss_dssp ----------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTEE
T ss_pred ----------eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-CCCCCceEEEEecCCCeE
Confidence 1112222 334578999999865444443 33 788888887544433333 334578899999888877
Q ss_pred EEEEeCCCeEE
Q 035500 593 LLLLHLTTMSR 603 (606)
Q Consensus 593 LaTgS~DgtIR 603 (606)
+.+-.....|.
T Consensus 573 YwaD~~~~~I~ 583 (791)
T 3m0c_C 573 YWVDSKLHSIS 583 (791)
T ss_dssp EEEETTTTEEE
T ss_pred EEEeCCCCcEE
Confidence 77765555543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.22 Score=55.93 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=38.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 545 TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 545 ~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.+.+++.++.|+.++.||.++|+.+..++.+......-+.|..+|+..+++.+
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 46788889999999999999999998887433333344666667765455443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.8 Score=47.93 Aligned_cols=149 Identities=3% Similarity=-0.096 Sum_probs=91.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-CeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-GCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-gtIklWDl~~~~~~ 518 (606)
+..++++|..+.+.++-...+.|.+.+.........+. ..-....+++++|.++.++++-... +.|...+.....
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~--~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-- 236 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-- 236 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec--CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--
Confidence 45678888566666666677889998887443322222 3345678999998665555555555 778888776521
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNSTDDQFL-ASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~La-Sgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...... .-..-+.|+|+|++..|+ +-+..+.|..+|+........+. ........+++. +..++.+.
T Consensus 237 --------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~giav~--~~~ly~td 305 (386)
T 3v65_B 237 --------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITVF--EDSLYWTD 305 (386)
T ss_dssp --------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC-SSCSSEEEEEEE--TTEEEEEE
T ss_pred --------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE-CCCCCceEEEEE--CCEEEEee
Confidence 111111 223468999998766544 44566889999987543333333 233456677773 34567776
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
...+.|.
T Consensus 306 ~~~~~V~ 312 (386)
T 3v65_B 306 WHTKSIN 312 (386)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 6655553
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.51 Score=47.36 Aligned_cols=147 Identities=10% Similarity=-0.037 Sum_probs=90.5
Q ss_pred eeEEEEcCCCCCEEEEEeC-----------------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCC-EEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTL-----------------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPS-KLVAG 501 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-----------------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~-~LaSg 501 (606)
+..+++.|.++++.++-.. +|.|..||..+++....... -....+++|+| ++. ++++-
T Consensus 128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~p~gia~~~-dg~~lyv~d 203 (322)
T 2fp8_A 128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE---LHVPGGAEVSA-DSSFVLVAE 203 (322)
T ss_dssp EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE---ESCCCEEEECT-TSSEEEEEE
T ss_pred cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC---CccCcceEECC-CCCEEEEEe
Confidence 6678888745566655432 47799999877765432221 12356799998 445 44555
Q ss_pred ECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeC----------CCcEEEEECCCCceeE
Q 035500 502 SDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGY----------SKNVALYDINTEKPLQ 570 (606)
Q Consensus 502 S~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~----------Dg~I~IWDlrt~k~v~ 570 (606)
+..+.|..|++..... .....+. ... ...+++.++|+++++... .+.|..+|.. ++.+.
T Consensus 204 ~~~~~I~~~~~~~~~~--------~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~ 273 (322)
T 2fp8_A 204 FLSHQIVKYWLEGPKK--------GTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILE 273 (322)
T ss_dssp GGGTEEEEEESSSTTT--------TCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEE
T ss_pred CCCCeEEEEECCCCcC--------CccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEE
Confidence 6778999999875311 0111111 122 678899999997777654 4678888874 77766
Q ss_pred EEcCCC---CCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 571 LFTDMH---REPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 571 ~l~~gH---~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
.+.... -..++.+++. +..+++++...+.|
T Consensus 274 ~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i 306 (322)
T 2fp8_A 274 VIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSV 306 (322)
T ss_dssp EEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEE
T ss_pred EEECCCCCccccceEEEEe--CCEEEEeecCCCce
Confidence 665321 2456777773 34577776555544
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=2.3 Score=42.87 Aligned_cols=149 Identities=6% Similarity=-0.021 Sum_probs=90.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-CeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-GCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-gtIklWDl~~~~~~ 518 (606)
+..+++++..+++.++-...+.|.+++........... ..-....+++++|.++.++++.... +.|...++...
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~--- 153 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--- 153 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE--CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---
Confidence 66788987455566666778999999987543332222 2334678999998555445554333 67887777652
Q ss_pred cccccCCcceEEee--cCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYY--DFEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~~LLa 594 (606)
....+. .-...+.+++.|++..++.+ +..+.|..+|+........... +.-.....+++. +.+++.
T Consensus 154 --------~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~ 223 (316)
T 1ijq_A 154 --------DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFW 223 (316)
T ss_dssp --------CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEE
T ss_pred --------CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEE
Confidence 112221 22347899999887655544 5568999999974332222221 122345677774 345677
Q ss_pred EEeCCCeEE
Q 035500 595 LLHLTTMSR 603 (606)
Q Consensus 595 TgS~DgtIR 603 (606)
+....+.|.
T Consensus 224 ~d~~~~~V~ 232 (316)
T 1ijq_A 224 TDIINEAIF 232 (316)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 766555553
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.64 Score=46.48 Aligned_cols=139 Identities=6% Similarity=-0.002 Sum_probs=85.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCce-EEEEe-------ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNV-ACYIP-------SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVA 520 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~-------~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~ 520 (606)
++..+++-..+|.|.++|..+++. +.... ..+.-....++ +|++..++++-+..+.|..+|+.....
T Consensus 127 ~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~--- 201 (306)
T 2p4o_A 127 DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK--- 201 (306)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC---
T ss_pred CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC---
Confidence 444455555689999999876532 11000 01112245666 664444566667788999999875211
Q ss_pred cccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeE--EEcCCCCCCeEEEEEe---CCCCeEEEE
Q 035500 521 DARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQ--LFTDMHREPINVAKFS---HHSPLCLLL 595 (606)
Q Consensus 521 ~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~--~l~~gH~~~I~sV~fs---P~g~~LLaT 595 (606)
+ .....+........+++.++|+++++....+.|..+|.. ++... .+. ......++++|. |++..++++
T Consensus 202 -~---~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-~~~~~p~~~a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 202 -P---GEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-QGVIGSTAVAFGQTEGDCTAIYVV 275 (306)
T ss_dssp -B---CCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-GTCTTEEEEEECCSTTTTTEEEEE
T ss_pred -C---CccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-cccCCceEEEEecccCCCCEEEEE
Confidence 0 011122212335678889999988887778999999986 65532 233 123568999998 898888887
Q ss_pred EeC
Q 035500 596 LHL 598 (606)
Q Consensus 596 gS~ 598 (606)
.+.
T Consensus 276 ~~~ 278 (306)
T 2p4o_A 276 TNG 278 (306)
T ss_dssp ECT
T ss_pred CCC
Confidence 764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.72 Score=49.33 Aligned_cols=158 Identities=9% Similarity=0.006 Sum_probs=97.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++++|.++.+.++-..++.|+.+|..++.....+...+....-..++|+|++..++++-...+.|..++........
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~ 309 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL 309 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc
Confidence 55678999677777777778999999998777632222223233345799999543356666778899998876421100
Q ss_pred ccccCCcceEEeec----------------CCCeEEEEE---------ccCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 035500 520 ADARGNSSVATYYD----------------FEQLTSVHV---------NSTDDQFLASGYSKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 520 ~~l~~~~~i~t~~~----------------~~~V~sV~~---------sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~ 574 (606)
. ....+.+ -..-..+++ .+.++++++-...+.|+.+|. .+........
T Consensus 310 ~------~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~ 382 (433)
T 4hw6_A 310 A------VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGR 382 (433)
T ss_dssp C------CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECC
T ss_pred C------cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeC
Confidence 0 0001100 122567888 566677777777889999985 4543332211
Q ss_pred CC----------------CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 575 MH----------------REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 575 gH----------------~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+. -..-..|+++|....++++-.....||.
T Consensus 383 g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~ 428 (433)
T 4hw6_A 383 GNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRK 428 (433)
T ss_dssp CTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred CCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 10 1236789999655567887777777764
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.28 Score=54.71 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=39.1
Q ss_pred CcEEEEECCCCceEEEEeccCCC--------CCEEEEEEeeCCC---CEEEEEECCCeEEEEeCCCCC
Q 035500 460 GEVIVINHENGNVACYIPSIGGT--------NSVLGLCWLKKYP---SKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 460 GtVrIWDi~tg~~v~~~~~~gH~--------~~V~~L~fsp~~~---~~LaSgS~DgtIklWDl~~~~ 516 (606)
+.|.-+|..+|+.+..++...|. .++. +.....++ ..++.++.+|.+.++|..+++
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence 68999999999999988765553 1221 11110133 368889999999999988754
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.99 Score=46.91 Aligned_cols=151 Identities=12% Similarity=0.120 Sum_probs=93.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC----CC--CCEEEEEE---eeCCCCEEEEEE--------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG----GT--NSVLGLCW---LKKYPSKLVAGS-------- 502 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g----H~--~~V~~L~f---sp~~~~~LaSgS-------- 502 (606)
+.+.+|++.++.+.++.-..|+|..||...+..... ...+ .. ..+.+|.| .|. +.+++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTT
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccccc
Confidence 556789985555555554899999999976654433 2212 11 13689999 574 45555432
Q ss_pred -----CCCeEEEEeCC---CCCCCcccccCCcceEEee----c-------C-CCeEEEEEccCCCEEEEEeCC-CcEEEE
Q 035500 503 -----DSGCVRLFDLN---HIPPKVADARGNSSVATYY----D-------F-EQLTSVHVNSTDDQFLASGYS-KNVALY 561 (606)
Q Consensus 503 -----~DgtIklWDl~---~~~~~~~~l~~~~~i~t~~----~-------~-~~V~sV~~sp~g~~LaSgs~D-g~I~IW 561 (606)
.+..+..+|+. +++. .-...+. . . ....+++.-++|+..++++.- +.|...
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~--------~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKP--------VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV 164 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCC--------SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCE--------EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence 26789999988 4321 0011111 0 1 237899999999999998887 777777
Q ss_pred ECCCCceeEEE-cC---CCCCCeEEEEEeCCCCeEEEEEeCCCe
Q 035500 562 DINTEKPLQLF-TD---MHREPINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 562 Dlrt~k~v~~l-~~---gH~~~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
|........-. .. ...-..+.|+++|++..|++..+ ++.
T Consensus 165 ~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~ 207 (334)
T 2p9w_A 165 SADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRA 207 (334)
T ss_dssp CTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSS
T ss_pred eCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCe
Confidence 76643222111 11 12234679999999997777666 553
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.66 Score=51.46 Aligned_cols=139 Identities=11% Similarity=-0.012 Sum_probs=80.2
Q ss_pred cEEEEECCCCceEEEEeccCCC--------CCEEEEEEeeCCC---CEEEEEECCCeEEEEeCCCCCCCcc-cccC----
Q 035500 461 EVIVINHENGNVACYIPSIGGT--------NSVLGLCWLKKYP---SKLVAGSDSGCVRLFDLNHIPPKVA-DARG---- 524 (606)
Q Consensus 461 tVrIWDi~tg~~v~~~~~~gH~--------~~V~~L~fsp~~~---~~LaSgS~DgtIklWDl~~~~~~~~-~l~~---- 524 (606)
.|..+|..+|+.+..++...|. .++. +...+ ++ ..++.++.+|.+.++|..+++..-. ....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 5999999999999888765442 2221 11122 33 2467788999999999887542100 0000
Q ss_pred --------CcceE--------------Eee---cCCCeEEEEEccCCCEEEEEe--------------------------
Q 035500 525 --------NSSVA--------------TYY---DFEQLTSVHVNSTDDQFLASG-------------------------- 553 (606)
Q Consensus 525 --------~~~i~--------------t~~---~~~~V~sV~~sp~g~~LaSgs-------------------------- 553 (606)
..|+. ... +...-..++++|+..+++..+
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 01110 000 000013467788777666553
Q ss_pred -----------CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 554 -----------YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 554 -----------~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.++.|..||+.+++.+..++. ...+....+...+.. +..++.|+.+++
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~-v~~g~~dg~l~a 489 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKGGL-VWYATLDGYLKA 489 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTE-EEEECTTSEEEE
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecC--CCCccceeEEECCCE-EEEEcCCCeEEE
Confidence 347899999999999877763 223333333334554 445788888775
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=2.4 Score=47.67 Aligned_cols=150 Identities=5% Similarity=-0.033 Sum_probs=98.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|++.++.+..+-..++.|+.+++........+. .......++++.+.++.+.++-+..+.|.+.++....
T Consensus 39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~--~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--- 113 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE--FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--- 113 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe--CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---
Confidence 67899999666666666678999999987544433332 1223567888887555566666777889999887631
Q ss_pred ccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
..... ..-..-.+|++.|....++-+. ..+.|...++.......... .-...+.+++++.+..++.+-
T Consensus 114 -------~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~--~~~~P~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 114 -------RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP--NVGRANGLTIDYAKRRLYWTD 184 (628)
T ss_dssp -------CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--SCSSEEEEEEETTTTEEEEEE
T ss_pred -------EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC--CCCCcceEEEccccCEEEEEE
Confidence 11112 2334468999999765444443 35778888887544433333 345678999999888787776
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
+..+.|.
T Consensus 185 ~~~~~I~ 191 (628)
T 4a0p_A 185 LDTNLIE 191 (628)
T ss_dssp TTTTEEE
T ss_pred CCCCEEE
Confidence 6666554
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.026 Score=61.96 Aligned_cols=13 Identities=8% Similarity=-0.046 Sum_probs=7.5
Q ss_pred hhhhccCCCCCCC
Q 035500 264 MELSSCLSPNLNG 276 (606)
Q Consensus 264 ~~~l~~~~~~~~~ 276 (606)
+..|+.|++.+|.
T Consensus 288 ~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 288 CSRLTTLNLSYAT 300 (594)
T ss_dssp HTTCCEEECTTCC
T ss_pred hCCCCEEEccCCC
Confidence 3456666666555
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.022 Score=58.29 Aligned_cols=76 Identities=16% Similarity=0.105 Sum_probs=59.9
Q ss_pred CceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCcccc-EEEcccccccchhhhhHHhhcCCchh
Q 035500 125 SSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLM-CLSMCETRIVNLWTTTAAISKLPYLM 201 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~-~l~~~~~~~~~l~~~~~~l~~~~~l~ 201 (606)
.+=+.|+|++|++..+. .+..+.+|++|.|. .| |+.|++++|..+++|+ .|.+.+ +|..+ .-.|...+++|+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~-~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I--~~~aF~~c~~L~ 300 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP-HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI--EFGAFMGCDNLR 300 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECC-TT-CCEECTTTTTTCTTCCEEEEECT-TCCEE--CTTTTTTCTTEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECC-cc-cceehHHHhhCChhccEEEEEcc-cceEE--chhhhhCCccCC
Confidence 34577999988888887 56778889999888 44 9999999999999998 999977 56544 225777788888
Q ss_pred hhhh
Q 035500 202 ELRF 205 (606)
Q Consensus 202 ~l~~ 205 (606)
+|.+
T Consensus 301 ~l~l 304 (329)
T 3sb4_A 301 YVLA 304 (329)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8874
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=3.4 Score=47.13 Aligned_cols=147 Identities=13% Similarity=0.113 Sum_probs=94.9
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc------CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI------GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~------gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
.|.++...+ ++++. .|+.+|-|..||..++......... -....|.++...+ ++..|..|+.++-+..||.
T Consensus 358 ~V~~i~~d~-~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 358 VVSCIVEDK-DKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp SEEEEEECT-TSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEET
T ss_pred eeEEEEECC-CCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeC
Confidence 378888887 77655 5777766999998877654432110 1235789998875 4453777888788999998
Q ss_pred CCCCCCcccccCCcceEEee------cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc-----CCCCCCeE
Q 035500 513 NHIPPKVADARGNSSVATYY------DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT-----DMHREPIN 581 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~------~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~-----~gH~~~I~ 581 (606)
.++. ...+. ....|.++...++|.+.+.+. +-+..||..+++...... ..+...|+
T Consensus 435 ~~~~-----------~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 435 NSGQ-----------VENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp TTCC-----------EEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEE
T ss_pred CCCc-----------EEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEE
Confidence 7632 22222 134589998888788666554 458999988765432211 01246799
Q ss_pred EEEEeCCCCeEEEEEeCCCeEE
Q 035500 582 VAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 582 sV~fsP~g~~LLaTgS~DgtIR 603 (606)
++...++|. +.+.+. +|..+
T Consensus 502 ~i~~d~~g~-lWigt~-~Gl~~ 521 (795)
T 4a2l_A 502 TLFRDSHKR-LWIGGE-EGLSV 521 (795)
T ss_dssp EEEECTTCC-EEEEES-SCEEE
T ss_pred EEEECCCCC-EEEEeC-CceEE
Confidence 999998887 444443 56544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=1.8 Score=45.34 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=91.3
Q ss_pred eeEEEEcCCCCCEEEEEe-------------CCCcEEEEECCC--CceEEEEeccC-----CCCCEEEEEEeeC-CC-CE
Q 035500 440 PRQFEYNPSNPSLMAFGT-------------LDGEVIVINHEN--GNVACYIPSIG-----GTNSVLGLCWLKK-YP-SK 497 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-------------~DGtVrIWDi~t--g~~v~~~~~~g-----H~~~V~~L~fsp~-~~-~~ 497 (606)
+-.+++.| +| ++.+++ .+|.|.++|..+ ++. ..+...+ ..-...++.+.++ ++ .+
T Consensus 52 ~EDi~~~~-~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 52 SEDLEILP-NG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCEEEECT-TS-EEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred cceeEEcC-CC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 34566777 66 444444 799999999873 332 2233333 2346788888763 22 23
Q ss_pred EEEE-EC--CCeEEEEeCCCCCCCcccccCCcceEEeecC--CCeEEEEEccCCCEEEEEeC-----------------C
Q 035500 498 LVAG-SD--SGCVRLFDLNHIPPKVADARGNSSVATYYDF--EQLTSVHVNSTDDQFLASGY-----------------S 555 (606)
Q Consensus 498 LaSg-S~--DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~--~~V~sV~~sp~g~~LaSgs~-----------------D 555 (606)
|+.+ .. +.+|.+|++...... ...+.++.+. ...+++.+.++|.+.++... .
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~------~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKS------LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTE------EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCeEEEEEEECCCCE------EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc
Confidence 4444 33 568888888763211 1233445442 34899999999987777641 2
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 556 KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 556 g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
|.|.-||. ++...... .-..-+.++|+|+++.++++-+..+.|.
T Consensus 203 g~vyr~d~--~~~~~~~~--~l~~pNGia~spDg~~lYvadt~~~~I~ 246 (355)
T 3sre_A 203 SFVTYYSP--NDVRVVAE--GFDFANGINISPDGKYVYIAELLAHKIH 246 (355)
T ss_dssp EEEEEECT--TCCEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred cEEEEEEC--CeEEEeec--CCcccCcceECCCCCEEEEEeCCCCeEE
Confidence 45555555 33222222 2356789999999999888887776664
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=94.38 E-value=3.6 Score=43.21 Aligned_cols=150 Identities=6% Similarity=-0.036 Sum_probs=91.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWDl~~~~~~ 518 (606)
+..+++.+..+++.++-...+.|.+.+.........+. ..-....+|+++|.++.++++-.. .+.|...++....
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~--~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-- 236 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-- 236 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE--CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS--
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe--CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc--
Confidence 66788988566666666778899999987554433332 233457899999855444554422 4678888776521
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~~LLaT 595 (606)
...... .-...+.|++.+++..++.+ +..+.|..+|+........... +.-.....+++ ++..++.+
T Consensus 237 --------~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywt 306 (400)
T 3p5b_L 237 --------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT 306 (400)
T ss_dssp --------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEE
T ss_pred --------cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEe
Confidence 111222 22457899999887765555 4568899999875433222221 12234456665 34456666
Q ss_pred EeCCCeEE
Q 035500 596 LHLTTMSR 603 (606)
Q Consensus 596 gS~DgtIR 603 (606)
....+.|.
T Consensus 307 d~~~~~V~ 314 (400)
T 3p5b_L 307 DIINEAIF 314 (400)
T ss_dssp ESSSCSEE
T ss_pred cCCCCeEE
Confidence 65555443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.077 Score=55.82 Aligned_cols=133 Identities=13% Similarity=0.159 Sum_probs=75.3
Q ss_pred CCCchhHHH-HhhhcCcCccceeeecc-CCCcccchhHHHHHHHHhh--ccceEEEccCccccchHHHhhccCCCceeEE
Q 035500 55 NADIYPLID-VFTEMDSFDIEAVDILS-KRPCFLKEEYIMSLMHAID--QKLRVVDLSNITLRNDNLLDLCQVGSSCHVL 130 (606)
Q Consensus 55 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 130 (606)
+.++..+++ .+..++++.|.++.+-. +-+-.--++.+-.|.+++- .+||.+.|.++.++...+.- |+
T Consensus 90 ~~~~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~-------~~-- 160 (362)
T 2ra8_A 90 AEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISW-------IE-- 160 (362)
T ss_dssp HHTTCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGG-------CB--
T ss_pred cccHHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhccccc-------cc--
Confidence 345555666 56688888899988832 2110001233333444342 37888888775432111100 10
Q ss_pred EccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhh--cCCchhhhhhce
Q 035500 131 ILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAIS--KLPYLMELRFQM 207 (606)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~--~~~~l~~l~~~~ 207 (606)
...+. ..+..+++|+.|.|..+..+ +++. +. +|+|++|.+..+.+.. ..+.+|. +||+|++|.++.
T Consensus 161 ---~~~L~--~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~--~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 161 ---QVDLS--PVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPD--SVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp ---CCBCH--HHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCH--HHHHHHHHSBCTTCCEEEEEC
T ss_pred ---ccCHH--HHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCCh--HHHHHHHHccCCCCcEEEEec
Confidence 00111 24456788999998744223 3433 33 8999999998887653 4445554 789999988653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=94.31 E-value=4 Score=41.49 Aligned_cols=149 Identities=3% Similarity=-0.097 Sum_probs=88.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE-ECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG-SDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg-S~DgtIklWDl~~~~~~ 518 (606)
+..+++.+..+++..+-...+.|.+++........... .......++++.|.++.++.+- +..+.|...+.....
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~--~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-- 156 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW--QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-- 156 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS--
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe--CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC--
Confidence 56788988566666666678899999987543322221 3345678999998554444443 235777777776521
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...... .-..-+.++++|++..++.+ +..+.|..+|+.......... +.......+++. +..++.+-
T Consensus 157 --------~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~glav~--~~~lywtd 225 (318)
T 3sov_A 157 --------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLF--EDILYWTD 225 (318)
T ss_dssp --------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SCCSCEEEEEEE--TTEEEEEE
T ss_pred --------eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-CCCCCceEEEEe--CCEEEEEe
Confidence 111111 22346899999977655544 566889999987433322222 233455667764 33566665
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
...+.|.
T Consensus 226 ~~~~~V~ 232 (318)
T 3sov_A 226 WSTHSIL 232 (318)
T ss_dssp TTTTEEE
T ss_pred cCCCeEE
Confidence 5555443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.02 Score=60.29 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=50.8
Q ss_pred ccceEEEccCccccchHHHhhccC-CCceeEEEccc--cc------hhccc---cccccccccEEecccCCCcccc-ccc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQV-GSSCHVLILRA--TN------IRKLN---MVGRFMHLNTLSLDFCSSLASL-HED 166 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~------~~~l~---~~~~~~~l~tl~l~~~~~~~~~-~~~ 166 (606)
.+||.++|..+.+..+.++.|++. -.+=+.|+|+. +. ++.|. ..+.|++|.+|.|. ++.|+.- ..-
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~-~~~i~~~~~~~ 271 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV-DAEEQNVVVEM 271 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEE-SCTTHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCC-CCCCchHHHHH
Confidence 355555555555555666666542 22334466542 11 11111 11346677777776 4554421 111
Q ss_pred cc--ccCccccEEEcccccccchh--hhhHHhhcCCchhhhhhce
Q 035500 167 CF--SCMPYLMCLSMCETRIVNLW--TTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 167 ~~--~~~p~l~~l~~~~~~~~~l~--~~~~~l~~~~~l~~l~~~~ 207 (606)
.+ ..||+|+.|.+..|.+.+-= .-...|..|++|++|.+..
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 12 25677777777666655420 0011234456666666543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.20 E-value=3.6 Score=44.26 Aligned_cols=143 Identities=10% Similarity=0.072 Sum_probs=90.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEeccC--CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcc--ccc
Q 035500 448 SNPSLMAFGTLDGEVIVINHENGNVACYIPSIG--GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVA--DAR 523 (606)
Q Consensus 448 ~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g--H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~--~l~ 523 (606)
.++.-++.+- ++.||.-++..+..-+.+.... --+.|..+..+| ++.+||..+ +.+|.|-.+..+..... ...
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 3666666664 4778888877443333444322 123578899998 667776665 56899999884321111 000
Q ss_pred CCcceEEeec-------CCCeEEEEEccCC---CEEEEEeCCCcEEEEECCCC--ceeEEEcC--------CCCCCeEEE
Q 035500 524 GNSSVATYYD-------FEQLTSVHVNSTD---DQFLASGYSKNVALYDINTE--KPLQLFTD--------MHREPINVA 583 (606)
Q Consensus 524 ~~~~i~t~~~-------~~~V~sV~~sp~g---~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~--------gH~~~I~sV 583 (606)
.....+++.- ..+|..+.|||-+ ..+++-..|++|++||+... ++. .+.. .+...|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 1122344442 3569999999985 58999999999999999963 233 3331 123678899
Q ss_pred EEeCCCCeEEE
Q 035500 584 KFSHHSPLCLL 594 (606)
Q Consensus 584 ~fsP~g~~LLa 594 (606)
+|.+++-.+.+
T Consensus 186 ~Fg~~~lTLYv 196 (452)
T 3pbp_A 186 EFSKDGLTLYC 196 (452)
T ss_dssp EECTTSSCEEE
T ss_pred EEcCCCcEEEE
Confidence 99997765554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.036 Score=60.86 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=62.5
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEcc----ccchhcc-------ccccccccccEEecccCCC-ccccc-cc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILR----ATNIRKL-------NMVGRFMHLNTLSLDFCSS-LASLH-ED 166 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l-------~~~~~~~~l~tl~l~~~~~-~~~~~-~~ 166 (606)
.+|+.++|..+.+....+..+++.-.+=+.|+|+ +|++... ..+..+++|++|.|.+|+. ++.-. +.
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 5677777766666666666665533344567774 4555432 1234567777777765442 33211 11
Q ss_pred ccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhceec
Q 035500 167 CFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 167 ~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
....+|+|+.|.+.+|++... .-.+-+..+++|++|.+.+|.
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDE-GLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHH-HHHHHHTCCTTCCEEEEESCC
T ss_pred HHHhCccceEeeccCCCCCHH-HHHHHHhcCcccCeeeccCCC
Confidence 233477788888887776542 112234567778888776654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=1.1 Score=50.03 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=49.1
Q ss_pred EEEcCCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEeccCCCC--------CEEEEEEeeCCC---
Q 035500 443 FEYNPSNPSLMAFGTLD----------------GEVIVINHENGNVACYIPSIGGTN--------SVLGLCWLKKYP--- 495 (606)
Q Consensus 443 lafsP~dg~~LaSGs~D----------------GtVrIWDi~tg~~v~~~~~~gH~~--------~V~~L~fsp~~~--- 495 (606)
.++.+ ..+++..++.+ +.|.-+|..+|+.+..++...|.. ++. +.....++
T Consensus 246 ~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 246 YAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred eeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 35666 55677777665 379999999999999888766532 222 12210133
Q ss_pred CEEEEEECCCeEEEEeCCCCC
Q 035500 496 SKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 496 ~~LaSgS~DgtIklWDl~~~~ 516 (606)
..++.++.+|.+.+.|..+++
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEECCCcEEEEEECCCCC
Confidence 357778899999999988764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.95 E-value=1.5 Score=47.31 Aligned_cols=111 Identities=15% Similarity=0.281 Sum_probs=63.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc------CCCCCEEEEEEeeC---CCCEEEEEEC-------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI------GGTNSVLGLCWLKK---YPSKLVAGSD------- 503 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~------gH~~~V~~L~fsp~---~~~~LaSgS~------- 503 (606)
++.++|.| +++++++-...+.|++++..++.......+. ...+...+|+|+|+ ++...++-+.
T Consensus 29 P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 29 PHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred ceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 78899999 8887776554457999987656543322211 12456889999985 4444444432
Q ss_pred -----CCeEEEEeCCCCCCCcccccCCcceE-Eee--cCCCeEEEEEccCCCEEEEEeC
Q 035500 504 -----SGCVRLFDLNHIPPKVADARGNSSVA-TYY--DFEQLTSVHVNSTDDQFLASGY 554 (606)
Q Consensus 504 -----DgtIklWDl~~~~~~~~~l~~~~~i~-t~~--~~~~V~sV~~sp~g~~LaSgs~ 554 (606)
...|.-|+....... +.....+. .+. .......|.|.|+|.++++.++
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~---~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDT---LEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTE---EEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCC---cCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 124444544321110 00011111 122 1234789999999998877664
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.86 E-value=3.6 Score=47.61 Aligned_cols=150 Identities=6% Similarity=-0.030 Sum_probs=90.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-CeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-GCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-gtIklWDl~~~~~~ 518 (606)
+..|++.+..+++.++-...++|.+.++........+. ..-....+|+++|..+.++++-..+ +.|...++...
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~--~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--- 547 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--- 547 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe--CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---
Confidence 67789998555666677778999999987544333222 3344688999998555455544333 67888777652
Q ss_pred cccccCCcceEEeec-CCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYYD-FEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~~LLaT 595 (606)
........ -...+.|++.+.+..|+.+ ...+.|...|+........+.. +.-.....|++ .+.+|+.+
T Consensus 548 -------~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwt 618 (791)
T 3m0c_C 548 -------DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT 618 (791)
T ss_dssp -------CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEE
T ss_pred -------ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEE
Confidence 11122222 2457899999877655555 4557899999875444333331 11223445555 34466766
Q ss_pred EeCCCeEE
Q 035500 596 LHLTTMSR 603 (606)
Q Consensus 596 gS~DgtIR 603 (606)
-...+.|.
T Consensus 619 D~~~~~I~ 626 (791)
T 3m0c_C 619 DIINEAIF 626 (791)
T ss_dssp ETTTTEEE
T ss_pred ECCCCEEE
Confidence 66555543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=4.5 Score=45.28 Aligned_cols=152 Identities=7% Similarity=-0.026 Sum_probs=95.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|++.++.+..+-...+.|+.++.........+. ..-....++++.+.++.+.++-+..+.|.+.++....
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~--~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~--- 425 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT--AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM--- 425 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE--CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe---
Confidence 67899999666555565668899999987544333222 2234567888886555566666778899999887631
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCC-EEEEE-eCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDD-QFLAS-GYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~-~LaSg-s~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..+.....-....+|+++|... +++|- +..+.|.-.++..... ..+....-...+.+++++.+..|+.+=+
T Consensus 426 ------~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~ 498 (619)
T 3s94_A 426 ------RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLVNTSLGWPNGLALDYDEGKIYWGDA 498 (619)
T ss_dssp ------CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred ------EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEEeCCCCCCeeeEEcccCCEEEEEEC
Confidence 1111111335578999999754 44444 2336677777653332 2332233456788999988777777766
Q ss_pred CCCeEE
Q 035500 598 LTTMSR 603 (606)
Q Consensus 598 ~DgtIR 603 (606)
..+.|.
T Consensus 499 ~~~~I~ 504 (619)
T 3s94_A 499 KTDKIE 504 (619)
T ss_dssp TTTEEE
T ss_pred CCCEEE
Confidence 555553
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.084 Score=60.32 Aligned_cols=151 Identities=9% Similarity=-0.046 Sum_probs=87.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC----CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN----GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t----g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+..++|++..+.+.++-...+.|+.+++.. ......+. .......+|++.+.++.++++-...+.|.+++....
T Consensus 408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~--~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC--SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe--CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 567789984444444445678999999875 12211111 111234567777545555666566788999987752
Q ss_pred CCCcccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCC-CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYS-KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~D-g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
. ...... .......|++.|.+. ++++-... +.|..+++........+. ..-...+.|+|+|++..|
T Consensus 486 ~----------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~-~~l~~PnGlavd~~~~~L 554 (699)
T 1n7d_A 486 K----------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRL 554 (699)
T ss_dssp C----------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC-SSCSSCCCEEECTTTCCE
T ss_pred c----------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe-CCCCCccEEEEeccCCEE
Confidence 1 111122 123357888998765 44443333 778888776433222222 122445679999988878
Q ss_pred EEEEeCCCeEE
Q 035500 593 LLLLHLTTMSR 603 (606)
Q Consensus 593 LaTgS~DgtIR 603 (606)
+++-+..+.|.
T Consensus 555 Y~aD~~~~~I~ 565 (699)
T 1n7d_A 555 YWVDSKLHSIS 565 (699)
T ss_dssp EEEETTTTEEE
T ss_pred EEEecCCCeEE
Confidence 87776666554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=93.63 E-value=1.7 Score=45.24 Aligned_cols=115 Identities=10% Similarity=0.074 Sum_probs=79.7
Q ss_pred ceeEEEE---cCCCCCEEEEEe-------------CCCcEEEEECC---CCceEEEEeccCCC-----------CCEEEE
Q 035500 439 RPRQFEY---NPSNPSLMAFGT-------------LDGEVIVINHE---NGNVACYIPSIGGT-----------NSVLGL 488 (606)
Q Consensus 439 rV~slaf---sP~dg~~LaSGs-------------~DGtVrIWDi~---tg~~v~~~~~~gH~-----------~~V~~L 488 (606)
.+..+.| .| ++.++++.. .++.|..||+. +++.+....+.+.. ....++
T Consensus 64 ~~sGl~~~~~D~-~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDv 142 (334)
T 2p9w_A 64 QMSGLSLLTHDN-SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQS 142 (334)
T ss_dssp EEEEEEESSSSS-CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEE
T ss_pred eeeEEEEeccCC-CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCcee
Confidence 3678899 68 577777544 26889999999 88887766543211 247789
Q ss_pred EEeeCCCCEEEEEECC-CeEEEEeCCCCCCCcccccCCcceEEee--c-----CCCeEEEEEccCCCEEEEEeCCCcEEE
Q 035500 489 CWLKKYPSKLVAGSDS-GCVRLFDLNHIPPKVADARGNSSVATYY--D-----FEQLTSVHVNSTDDQFLASGYSKNVAL 560 (606)
Q Consensus 489 ~fsp~~~~~LaSgS~D-gtIklWDl~~~~~~~~~l~~~~~i~t~~--~-----~~~V~sV~~sp~g~~LaSgs~Dg~I~I 560 (606)
+..+ .++..++++.- +.|...+.... .+..+. . ....+.|+++|++.++++....|.+.-
T Consensus 143 avD~-~GnaYVt~s~~~~~I~rV~pdG~-----------~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~ 210 (334)
T 2p9w_A 143 AQDR-DGNSYVAFALGMPAIARVSADGK-----------TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTA 210 (334)
T ss_dssp EECT-TSCEEEEEEESSCEEEEECTTSC-----------CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEE
T ss_pred EECC-CCCEEEeCCCCCCeEEEEeCCCC-----------EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEE
Confidence 9998 56777888877 77655555441 112111 1 122679999999998888866999999
Q ss_pred EECCCC
Q 035500 561 YDINTE 566 (606)
Q Consensus 561 WDlrt~ 566 (606)
+|+++.
T Consensus 211 fD~~~p 216 (334)
T 2p9w_A 211 FDVSKP 216 (334)
T ss_dssp EECSSS
T ss_pred EcCCCC
Confidence 999843
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=93.61 E-value=0.049 Score=51.62 Aligned_cols=99 Identities=12% Similarity=0.123 Sum_probs=55.5
Q ss_pred cceEEEccCccccchHHHhhccCCCceeEEEccccc-hhc--cccccc----cccccEEecccCCCcccccccccccCcc
Q 035500 101 KLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATN-IRK--LNMVGR----FMHLNTLSLDFCSSLASLHEDCFSCMPY 173 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--l~~~~~----~~~l~tl~l~~~~~~~~~~~~~~~~~p~ 173 (606)
+|+.+||++......-++.|. .=-.=+.|+|+... |.. |..+.. -++|+.|+|..|..||.-.-.....||+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 455555555544444444442 11122345555432 221 111222 2479999999999999755455667899
Q ss_pred ccEEEcccc-cccchhhhhHHhhc-CCch
Q 035500 174 LMCLSMCET-RIVNLWTTTAAISK-LPYL 200 (606)
Q Consensus 174 l~~l~~~~~-~~~~l~~~~~~l~~-~~~l 200 (606)
|+.|.+.+. +|++.=-++..|.+ ||.+
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l 169 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTC
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCc
Confidence 999999886 47664333444433 5554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=5.1 Score=44.84 Aligned_cols=152 Identities=6% Similarity=-0.020 Sum_probs=92.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|++.++.+..+=...+.|..++.........+. ...-....++++.+.++.++++-+..+.|.+.+.....
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~-~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~--- 117 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--- 117 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE-eCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC---
Confidence 66789999555555555557889999987543211111 12234688999998555566676778899999988631
Q ss_pred ccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
..... ..-....+|++.|.+..++-+. ..+.|...++.......... ..-...+.+++++.+..++.+-
T Consensus 118 -------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 118 -------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp -------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEEEE
T ss_pred -------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-CCCCCCcEEEEEccCCEEEEEe
Confidence 11112 2234467899999865444443 24667777776433333332 2345678999999888787776
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
+....|.
T Consensus 190 ~~~~~I~ 196 (619)
T 3s94_A 190 AKLNFIH 196 (619)
T ss_dssp TTTCCEE
T ss_pred CCCCeEE
Confidence 6665554
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=93.34 E-value=1.2 Score=47.99 Aligned_cols=117 Identities=11% Similarity=0.086 Sum_probs=76.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc------------eEEEEeccC----CCCCEEEEEEeeCC--CCEEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN------------VACYIPSIG----GTNSVLGLCWLKKY--PSKLVAG 501 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~------------~v~~~~~~g----H~~~V~~L~fsp~~--~~~LaSg 501 (606)
++.+..+| +|+++|..+ +.+|.|-.+..+. ...++.... ...+|..+.|+|.. +..|+.-
T Consensus 68 i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 68 TFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred eeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 66788999 999999886 5579998876321 112333211 35679999999953 4589999
Q ss_pred ECCCeEEEEeCCCCCCCcccccCCcceEEeec---CCCeEEEEEccCCCEEEEE--eCCCcEEE
Q 035500 502 SDSGCVRLFDLNHIPPKVADARGNSSVATYYD---FEQLTSVHVNSTDDQFLAS--GYSKNVAL 560 (606)
Q Consensus 502 S~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSg--s~Dg~I~I 560 (606)
..|++|++||+.........+..... .+.. ...|.+++|.+++=.+... +..|.|+-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~--~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNN--SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCS--EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhcccc--ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 99999999999873221111211111 2221 1458999999877555553 46777764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.081 Score=47.24 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=43.5
Q ss_pred EEEccccchh--ccccccccccccEEecccCCCcccccccccccCccccEEEcccccc
Q 035500 129 VLILRATNIR--KLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRI 184 (606)
Q Consensus 129 ~~~~~~~~~~--~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 184 (606)
++|.+++.+. .+.- +-..+|.+|.|. +|.|+.|+++-|..||+|+.|.|.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLT-GNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECT-TSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECC-CCcCCccChhhhhhccccCEEEecCCCe
Confidence 5677777665 4441 124479999999 9999999999999999999999998854
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.12 E-value=3.5 Score=43.74 Aligned_cols=156 Identities=6% Similarity=-0.014 Sum_probs=94.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCC-EEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPS-KLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~-~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+..++++|.++.++++-..++.|..|+...+........ +......+++|+|+ ++ ++++-...+.|..++.......
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-~~~~~P~gia~~pd-G~~lyv~d~~~~~I~~~~~d~~~~~ 305 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI-QDSGWEFHIQFHPS-GNYAYIVVVNQHYILRSDYDWKTKR 305 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC-SSSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEETTTTE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc-CCCCcceeEEEcCC-CCEEEEEECCCCEEEEEeCCccccc
Confidence 556789997777777777889999999987654333222 22345779999994 56 5666677889999887642110
Q ss_pred cccccCCcceEEeec----------------CCCeE-EEEEc--------cCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 519 VADARGNSSVATYYD----------------FEQLT-SVHVN--------STDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~----------------~~~V~-sV~~s--------p~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
.. .+.++.+ ...-. .+... +++.++++=...+.|+.+|. .++......
T Consensus 306 ~~------~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g 378 (430)
T 3tc9_A 306 LT------TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAG 378 (430)
T ss_dssp EC------CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEE
T ss_pred cc------ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEe
Confidence 00 0011110 01122 45553 23556666666788999884 454433332
Q ss_pred C------C----------CCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 574 D------M----------HREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ~------g----------H~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
. + .-..-+.++++|++..++++-.....||-
T Consensus 379 ~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~ 425 (430)
T 3tc9_A 379 RGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRK 425 (430)
T ss_dssp CCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred CCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 1 0 01247899999976678888777777763
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=7.4 Score=43.62 Aligned_cols=152 Identities=9% Similarity=-0.003 Sum_probs=93.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec--c--CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS--I--GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~--~--gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+..++|++.++.+..+=...+.|+.++.........+.. . .....+.++++...+..+.++-+..+.|.+.++...
T Consensus 342 ~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~ 421 (628)
T 4a0p_A 342 VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGR 421 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCC
Confidence 678999995555555555678899898764333222221 0 123468899998755556667778889999888652
Q ss_pred CCCcccccCCcceEEe-e-cCCCeEEEEEccC-CCEEEEEeCCC--cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 516 PPKVADARGNSSVATY-Y-DFEQLTSVHVNST-DDQFLASGYSK--NVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~-~-~~~~V~sV~~sp~-g~~LaSgs~Dg--~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
...++ . .-....+|+++|. |.++.|-.... .|...++.......... ..-...+.+++++.+.
T Consensus 422 -----------~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~-~~l~~P~gla~D~~~~ 489 (628)
T 4a0p_A 422 -----------SVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFF-SGLSKPIALALDSRLG 489 (628)
T ss_dssp -----------EEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTT
T ss_pred -----------eEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEe-ccCCCccEEEEeCCCC
Confidence 11222 2 3355899999995 55555543333 56666665333322233 2345678899999887
Q ss_pred eEEEEEeCCCeEE
Q 035500 591 LCLLLLHLTTMSR 603 (606)
Q Consensus 591 ~LLaTgS~DgtIR 603 (606)
.|+.+-+..+.|.
T Consensus 490 ~LYw~D~~~~~I~ 502 (628)
T 4a0p_A 490 KLFWADSDLRRIE 502 (628)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEeCCCCEEE
Confidence 7777666555554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=4.5 Score=46.04 Aligned_cols=143 Identities=12% Similarity=0.082 Sum_probs=91.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc--CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI--GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~--gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.++...+ +++++-.|+.++-+..||..+++........ .+...|.++...+ ++. |..|+.+ -+..||..+..
T Consensus 408 v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lwigt~~-Gl~~~~~~~~~- 482 (795)
T 4a2l_A 408 IKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGN-LWLGTLS-ALVRFNPEQRS- 482 (795)
T ss_dssp EEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSC-EEEEESS-CEEEEETTTTE-
T ss_pred EEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCC-EEEEecC-ceeEEeCCCCe-
Confidence 77888887 7774667777777999999887654432100 1245788988776 334 4455554 47888876531
Q ss_pred CcccccCCcceEEee--------cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc------CCCCCCeEEE
Q 035500 518 KVADARGNSSVATYY--------DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT------DMHREPINVA 583 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~--------~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~------~gH~~~I~sV 583 (606)
...+. ....|.++...++|.+.+.+. +-+..||..+++. .+. ..+...|.++
T Consensus 483 ----------~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i 548 (795)
T 4a2l_A 483 ----------FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCI 548 (795)
T ss_dssp ----------EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEE
T ss_pred ----------EEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEE
Confidence 11111 124588998888888766554 5688999887665 222 0134679999
Q ss_pred EEeCCCCeEEEEEeCCCeEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIR 603 (606)
...++|. +.+++. .|..+
T Consensus 549 ~~d~~g~-lWigT~-~Gl~~ 566 (795)
T 4a2l_A 549 YEASNGI-IWVGTR-EGFYC 566 (795)
T ss_dssp EECTTSC-EEEEES-SCEEE
T ss_pred EECCCCC-EEEEeC-CCcee
Confidence 9988887 344433 36655
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.69 E-value=5.9 Score=41.22 Aligned_cols=153 Identities=8% Similarity=0.071 Sum_probs=85.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec----cCCCCCEEEEEEeeC---CCCEEEEEE--CCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS----IGGTNSVLGLCWLKK---YPSKLVAGS--DSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~----~gH~~~V~~L~fsp~---~~~~LaSgS--~DgtIklW 510 (606)
++.++|.| ++.++++--..|+|++++...++....... ....+...+|+++|+ ++...++-+ .++.|.-|
T Consensus 34 P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 34 PWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred ceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 78999999 888777765589999998766654322111 123456899999984 333333323 34455555
Q ss_pred eCCCCCCCcccccCCcceE-Eee--cCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEECCCC----c---
Q 035500 511 DLNHIPPKVADARGNSSVA-TYY--DFEQLTSVHVNSTDDQFLASGY-------------SKNVALYDINTE----K--- 567 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~-t~~--~~~~V~sV~~sp~g~~LaSgs~-------------Dg~I~IWDlrt~----k--- 567 (606)
...........+.....+. .+. ....-..|.|.|+|.++++.++ -|.|.-.+.... .
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~ 192 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFP 192 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSST
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCC
Confidence 5544211000111111121 121 1223567999999998887653 245544455422 0
Q ss_pred eeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 568 PLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 568 ~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
....+..+|.+ ...++|+|++. ++++
T Consensus 193 ~~~i~a~G~RN-p~Gla~dp~G~-L~~~ 218 (347)
T 3das_A 193 GSPVYSYGHRN-VQGLAWDDKQR-LFAS 218 (347)
T ss_dssp TCCEEEBCCSB-CCEEEECTTCC-EEEE
T ss_pred CCeEEeeCCCC-cceEEECCCCC-EEEE
Confidence 12244446643 45899999876 5554
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=92.38 E-value=4 Score=42.67 Aligned_cols=139 Identities=9% Similarity=0.074 Sum_probs=89.2
Q ss_pred CCcEEEEEC--CCCceEEEEecc----CCC-CCEEEEEE--eeCCCC-EEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 459 DGEVIVINH--ENGNVACYIPSI----GGT-NSVLGLCW--LKKYPS-KLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 459 DGtVrIWDi--~tg~~v~~~~~~----gH~-~~V~~L~f--sp~~~~-~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
+++|.+|++ .++. +..+... +.. ..++++|. +|..+. +++....+|.+..|++....... . ....+
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~--~-~~~lV 173 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY--I-SGKKV 173 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC--E-EEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc--c-cceEE
Confidence 578999966 4444 3333110 111 56788888 554443 57888889999999985421100 0 13457
Q ss_pred EEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-----CCceeEEEcCCCC-CCeEEEEE--eCCCC-eEEEEEeCC
Q 035500 529 ATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDIN-----TEKPLQLFTDMHR-EPINVAKF--SHHSP-LCLLLLHLT 599 (606)
Q Consensus 529 ~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr-----t~k~v~~l~~gH~-~~I~sV~f--sP~g~-~LLaTgS~D 599 (606)
+++...+++..+...+....++.+-.+.-|--||.+ +++.+..+..+|- ..+-.+++ .+++. ++++++-.+
T Consensus 174 R~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 174 RAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred EEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence 788877889999999888999999998667667755 2345555533332 36788887 45555 777777455
Q ss_pred Ce
Q 035500 600 TM 601 (606)
Q Consensus 600 gt 601 (606)
.+
T Consensus 254 ~s 255 (355)
T 3amr_A 254 SS 255 (355)
T ss_dssp TE
T ss_pred CE
Confidence 33
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.04 E-value=2.8 Score=43.17 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=82.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec---cCCCCCEEEEEEeeC---CCCEEEEEECC-----CeEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS---IGGTNSVLGLCWLKK---YPSKLVAGSDS-----GCVR 508 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~---~gH~~~V~~L~fsp~---~~~~LaSgS~D-----gtIk 508 (606)
++.++|.| ++++++ +..+|.|++++ .+........ ........+++|+|+ ++...++-+.+ +.|.
T Consensus 33 P~~ia~~p-dG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 33 PWALAFLP-DGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp EEEEEECT-TSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred ceEEEEcC-CCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 78899999 887554 45679999998 4443221111 122456899999985 34444444433 5677
Q ss_pred EEeCCCCCCCcccccCCcceE-Eeec----CCCeEEEEEccCCCEEEEEeCC-------------CcEEEEECCCC----
Q 035500 509 LFDLNHIPPKVADARGNSSVA-TYYD----FEQLTSVHVNSTDDQFLASGYS-------------KNVALYDINTE---- 566 (606)
Q Consensus 509 lWDl~~~~~~~~~l~~~~~i~-t~~~----~~~V~sV~~sp~g~~LaSgs~D-------------g~I~IWDlrt~---- 566 (606)
.|+..... +.....+. .+.. ......++|.|+|.+.++.+.. +.|.-+|....
T Consensus 109 r~~~~~~~-----~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 109 RLRHLGER-----GVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEECSSC-----EEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEeCCCC-----cCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 77766421 00011111 1221 1124689999999877775432 45666665431
Q ss_pred --------ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 567 --------KPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 567 --------k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.....+..+| ...+.++|+|+...++++-.
T Consensus 184 npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp CTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE
T ss_pred CcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc
Confidence 1112233244 23567899994444565543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=91.98 E-value=6.1 Score=39.90 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=82.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEC--CCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINH--ENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi--~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
+..+++.| ++.+++.+...+..+-+|- .+.+.+ . .+....+..+.+.+. + .++.++.+|.+.+++...+.
T Consensus 165 ~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW~~~---~-~~~~~~~~~~~~~~~-g-~~~~~~~~G~~~~s~~D~G~- 236 (327)
T 2xbg_A 165 MRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAWEPH---N-RTTSRRLHNMGFTPD-G-RLWMIVNGGKIAFSDPDNSE- 236 (327)
T ss_dssp EEEEEECT-TSCEEEEETTSSEEEEECTTCSSCEEE---E-CCSSSCEEEEEECTT-S-CEEEEETTTEEEEEETTEEE-
T ss_pred eEEEEEcC-CCcEEEEECCCcEEEEeCCCCCceeEC---C-CCCCCccceeEECCC-C-CEEEEeCCceEEEecCCCCC-
Confidence 56788988 7777766654443333442 222222 1 245567889998873 3 45566778888777422110
Q ss_pred CcccccCC-cceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC--CCCCCeEEEEEeCCCCeEEE
Q 035500 518 KVADARGN-SSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD--MHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 518 ~~~~l~~~-~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~--gH~~~I~sV~fsP~g~~LLa 594 (606)
.+... .+ .+.....+.++.+.+.+..++++. ++.+ ++....++.-..+.. .+...++.+.|.+++. +.
T Consensus 237 ---tW~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~--~~ 307 (327)
T 2xbg_A 237 ---NWGELLSP--LRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ--GF 307 (327)
T ss_dssp ---EECCCBCT--TSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE--EE
T ss_pred ---eeEeccCC--cccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc--eE
Confidence 01000 00 001123478899988777766654 5766 455555655444441 1346788999975543 44
Q ss_pred EEeCCCeEE
Q 035500 595 LLHLTTMSR 603 (606)
Q Consensus 595 TgS~DgtIR 603 (606)
.++.+|+|.
T Consensus 308 ~~G~~G~i~ 316 (327)
T 2xbg_A 308 ILGQKGILL 316 (327)
T ss_dssp EECSTTEEE
T ss_pred EEcCCceEE
Confidence 556677664
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=2.7 Score=43.41 Aligned_cols=151 Identities=12% Similarity=0.094 Sum_probs=82.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEe-ccCCCCCEEEEEEeeC---CCCEEEEEEC---C----CeE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-VACYIP-SIGGTNSVLGLCWLKK---YPSKLVAGSD---S----GCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-~v~~~~-~~gH~~~V~~L~fsp~---~~~~LaSgS~---D----gtI 507 (606)
++.++|.| ++++ ..+..+|.|+++| .+++ .+..+. .........+|+|+|+ ++...++-+. + ..|
T Consensus 31 P~~ia~~p-dG~l-~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 31 PWSIAPLG-GGRY-LVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp EEEEEEEE-TTEE-EEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CeEEEEcC-CCeE-EEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 78899999 8864 4556679999997 4454 111111 1122356899999985 4444444442 3 566
Q ss_pred EEEeCCCCCCCcccccCCcce-EEeec--CCCeEEEEEccCCCEEEEEeCC-------------CcEEEEECCCCc----
Q 035500 508 RLFDLNHIPPKVADARGNSSV-ATYYD--FEQLTSVHVNSTDDQFLASGYS-------------KNVALYDINTEK---- 567 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i-~t~~~--~~~V~sV~~sp~g~~LaSgs~D-------------g~I~IWDlrt~k---- 567 (606)
..|+....... +.....+ ..+.. ......+.|.|+|.++++.+.. +.|.-+|....-
T Consensus 108 ~r~~~~~~~~~---~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 108 IRGRLDGSTFK---LKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEECSSSCC---EEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEECCCCcC---cCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 66776542100 0001111 11221 1224679999999877775532 455555554220
Q ss_pred ---eeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 568 ---PLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 568 ---~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
....+..+|. ..+.++|+|+...++++-.
T Consensus 185 pf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 185 PFPNSPIWSYGHR-NPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp SSTTCCEEEECCS-CCCEEEECTTTCCEEEEEC
T ss_pred CCCCCcEEEEccC-CcceEEEeCCCCCEEEEec
Confidence 1123333453 3457999994444666543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=91.68 E-value=0.55 Score=52.69 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=72.0
Q ss_pred EEEEcCCCCCEEEEEeCCC-----------cEEEEECCCCceEEEEec-cCCCCCEEEEEEeeCCCCEEEEEE-CCCeEE
Q 035500 442 QFEYNPSNPSLMAFGTLDG-----------EVIVINHENGNVACYIPS-IGGTNSVLGLCWLKKYPSKLVAGS-DSGCVR 508 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DG-----------tVrIWDi~tg~~v~~~~~-~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIk 508 (606)
..++.|.++.+++.|+.++ .+.+||..+++....... ..+.....++++.+ ++.+++.|| .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 3456665778888888653 588999988765432221 12333344566665 567888888 455899
Q ss_pred EEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe-CC-----CcEEEEECCCCc
Q 035500 509 LFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG-YS-----KNVALYDINTEK 567 (606)
Q Consensus 509 lWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs-~D-----g~I~IWDlrt~k 567 (606)
+||..+.. |. .+..+.....-.++...+++.+++.|| .+ ..+.+||..+.+
T Consensus 269 ~yd~~t~~-----W~---~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 269 LYDSSSDS-----WI---PGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEGGGTE-----EE---ECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EecCcCCc-----ee---ECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 99987631 11 011111111123455667899999998 44 579999998764
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=91.31 E-value=3 Score=43.04 Aligned_cols=151 Identities=13% Similarity=0.035 Sum_probs=81.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-----ccCCCCCEEEEEEeeC---CCCEEEEEEC-------C
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP-----SIGGTNSVLGLCWLKK---YPSKLVAGSD-------S 504 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~-----~~gH~~~V~~L~fsp~---~~~~LaSgS~-------D 504 (606)
++.++|.| +++.+..+...|.|++++.. +.....+. .....+...+++|+|+ ++...++-+. .
T Consensus 20 P~~i~~~p-dG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 20 PWALAFLP-DNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp EEEEEECS-TTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred cEEEEEcC-CCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 78899999 88834455668999999853 33221111 0112346789999984 3444444333 2
Q ss_pred CeEEEEeCCCCCCCcccccCCcceE-Eee----cCCCeEEEEEccCCCEEEEEeCC-------------CcEEEEECCCC
Q 035500 505 GCVRLFDLNHIPPKVADARGNSSVA-TYY----DFEQLTSVHVNSTDDQFLASGYS-------------KNVALYDINTE 566 (606)
Q Consensus 505 gtIklWDl~~~~~~~~~l~~~~~i~-t~~----~~~~V~sV~~sp~g~~LaSgs~D-------------g~I~IWDlrt~ 566 (606)
..|.-|+......... ....+. .+. ....-..+.|.|+|.+.++.++. |.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVT---DFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEECTTSSBEE---EEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eEEEEEEECCCCCCCC---ceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 2455566543211000 001111 111 11224679999999776666542 45766776532
Q ss_pred c------------eeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 567 K------------PLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 567 k------------~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
- ....+..+| .....++|+|....++++-
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNE 215 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEE
T ss_pred CCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEe
Confidence 1 222333345 3467899999444466553
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=91.26 E-value=0.15 Score=54.15 Aligned_cols=99 Identities=13% Similarity=0.183 Sum_probs=67.8
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccE
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
|.+|+.|+|.++ ...+.+-+..|-.=+.|+|.+ .+..++ .+..+.+|.+|.|. .|+|+.|+.++|.| .+|+.
T Consensus 134 ~~~L~~i~l~~~---i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~-~n~l~~I~~~aF~~-~~L~~ 207 (401)
T 4fdw_A 134 NSQIAKVVLNEG---LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS-KTKITKLPASTFVY-AGIEE 207 (401)
T ss_dssp TCCCSEEECCTT---CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECT-TSCCSEECTTTTTT-CCCSE
T ss_pred cCCccEEEeCCC---ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecC-CCcceEechhhEee-cccCE
Confidence 457888888774 233333334443445677764 566665 45567889999998 88899999999986 88999
Q ss_pred EEcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 177 LSMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 177 l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
|.+-++ |..+ .-.|...+++|++|.|.
T Consensus 208 l~lp~~-l~~I--~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 208 VLLPVT-LKEI--GSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp EECCTT-CCEE--CTTTTTTCTTCCCEECC
T ss_pred EEeCCc-hhee--hhhHhhCCCCCCEEecC
Confidence 988755 5544 22466778888887753
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=91.00 E-value=13 Score=42.14 Aligned_cols=146 Identities=14% Similarity=0.004 Sum_probs=88.3
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
.|.++...+ ++.+.+ |+.++-+..||..+++.............|.++...+ + ..+..|+. +-+..||..+....
T Consensus 408 ~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~-g~lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 408 SVLCSLKDS-EGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-N-KKIWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp BEEEEEECT-TSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-T-SEEEEEET-TEEEEEESSSSSCC
T ss_pred ceEEEEECC-CCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-C-CCEEEEEC-CceEEEeCCCCeEE
Confidence 377888876 665554 7776668999988776543211011345788888775 3 45666666 55888887763210
Q ss_pred cccccCCcceEEee----cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC---CCCCeEEEEEeCCCCe
Q 035500 519 VADARGNSSVATYY----DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM---HREPINVAKFSHHSPL 591 (606)
Q Consensus 519 ~~~l~~~~~i~t~~----~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g---H~~~I~sV~fsP~g~~ 591 (606)
...... ....|.++...++|.+.+.+.. +-+..||..+++.. .+... ....|.++...++|.
T Consensus 483 --------~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~-~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~- 551 (781)
T 3v9f_A 483 --------HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG-GGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQ- 551 (781)
T ss_dssp --------EEECTTTSSCSCSCEEEEEECTTCCEEEEESS-SCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSC-
T ss_pred --------ecccCcccccccceeEEEEEcCCCCEEEEEcC-CCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCC-
Confidence 000000 1245889988888876665443 44778998766543 33211 245789999988887
Q ss_pred EEEEEeCCCe
Q 035500 592 CLLLLHLTTM 601 (606)
Q Consensus 592 LLaTgS~Dgt 601 (606)
+.+++. +|.
T Consensus 552 lWi~T~-~Gl 560 (781)
T 3v9f_A 552 MWLATG-EGL 560 (781)
T ss_dssp EEEEET-TEE
T ss_pred EEEEEC-CCc
Confidence 444433 665
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.12 E-value=7.8 Score=42.32 Aligned_cols=162 Identities=11% Similarity=0.054 Sum_probs=93.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC-------CCce-----------EEEEeccCCCCCEEEEEEeeCCCC-EEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE-------NGNV-----------ACYIPSIGGTNSVLGLCWLKKYPS-KLVA 500 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~-------tg~~-----------v~~~~~~gH~~~V~~L~fsp~~~~-~LaS 500 (606)
+..++++|.++.++++-..++.|..+|.. ++.. ...+-..+....-+.++|+|. ++ ++++
T Consensus 249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~-G~~lYva 327 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPT-GKYAYFG 327 (496)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTT-SSEEEEE
T ss_pred ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCC-CCEEEEE
Confidence 44677999777777788888999999987 5543 111111233445689999994 45 4666
Q ss_pred EECCCeEEEEeCCCCCCCc---ccccCCcceEEee-c------CCCeE-EEEEc-------cCCCEEEEEeCCCcEEEEE
Q 035500 501 GSDSGCVRLFDLNHIPPKV---ADARGNSSVATYY-D------FEQLT-SVHVN-------STDDQFLASGYSKNVALYD 562 (606)
Q Consensus 501 gS~DgtIklWDl~~~~~~~---~~l~~~~~i~t~~-~------~~~V~-sV~~s-------p~g~~LaSgs~Dg~I~IWD 562 (606)
=+....|+.+|........ ..+-+.....-+. + -..-. .+... +.++++++=...+.|+.++
T Consensus 328 D~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~ 407 (496)
T 3kya_A 328 VINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT 407 (496)
T ss_dssp ETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC
T ss_pred eCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe
Confidence 6778889887654421100 0000000000000 0 01123 44444 4566777777789999998
Q ss_pred CCCCceeEEEc-C------------CC----------CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 563 INTEKPLQLFT-D------------MH----------REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 563 lrt~k~v~~l~-~------------gH----------~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.++.. .++- . |. -..-+.|+++++...++++=+....||.
T Consensus 408 -~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrk 470 (496)
T 3kya_A 408 -PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRT 470 (496)
T ss_dssp -TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred -CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 45543 3332 1 11 1235689999974557777777777774
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=90.01 E-value=0.94 Score=50.78 Aligned_cols=126 Identities=7% Similarity=-0.056 Sum_probs=68.5
Q ss_pred CcEEEEECCCCceEEEEeccCC-------CCCEEEEEEeeCCCCEEEEEECCC-----------eEEEEeCCCCCCCccc
Q 035500 460 GEVIVINHENGNVACYIPSIGG-------TNSVLGLCWLKKYPSKLVAGSDSG-----------CVRLFDLNHIPPKVAD 521 (606)
Q Consensus 460 GtVrIWDi~tg~~v~~~~~~gH-------~~~V~~L~fsp~~~~~LaSgS~Dg-----------tIklWDl~~~~~~~~~ 521 (606)
..+..||..+............ .....++.|...++..++.|+.++ .|.+||.....
T Consensus 369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~----- 443 (656)
T 1k3i_A 369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP----- 443 (656)
T ss_dssp SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC-----
T ss_pred cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC-----
Confidence 3567888887654332221110 112345555444566777777543 57777766521
Q ss_pred ccCCcceEEee-----cCCCeEEEEEccCCCEEEEEeCC-----------CcEEEEECCCCceeE--EEcCCCCCCeEEE
Q 035500 522 ARGNSSVATYY-----DFEQLTSVHVNSTDDQFLASGYS-----------KNVALYDINTEKPLQ--LFTDMHREPINVA 583 (606)
Q Consensus 522 l~~~~~i~t~~-----~~~~V~sV~~sp~g~~LaSgs~D-----------g~I~IWDlrt~k~v~--~l~~gH~~~I~sV 583 (606)
..... ....-.+....|++.+++.||.+ ..+.+||..+.+=.. .+. .......+.
T Consensus 444 ------W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~-~~R~~hs~a 516 (656)
T 1k3i_A 444 ------NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS-IVRVYHSIS 516 (656)
T ss_dssp ------EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS-SCCCTTEEE
T ss_pred ------eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC-CccccccHh
Confidence 11111 11112344567899999999864 568999998764221 112 111222344
Q ss_pred EEeCCCCeEEEEEeC
Q 035500 584 KFSHHSPLCLLLLHL 598 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~ 598 (606)
.+.|++. +++.||.
T Consensus 517 ~ll~dg~-v~v~GG~ 530 (656)
T 1k3i_A 517 LLLPDGR-VFNGGGG 530 (656)
T ss_dssp EECTTSC-EEEEECC
T ss_pred hcCCCcE-EEecCCC
Confidence 5568887 6777774
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.85 E-value=12 Score=42.52 Aligned_cols=146 Identities=10% Similarity=0.023 Sum_probs=89.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP-SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~-~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|+++...+ ++.+. .|+.++-+..||..++....... .......|.++...+ + ..|..|+.++-+..+|..+..
T Consensus 365 v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~-g~lWigt~~~Gl~~~~~~~~~-- 438 (781)
T 3v9f_A 365 VSSVCDDG-QGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-E-GNLWFGTYLGNISYYNTRLKK-- 438 (781)
T ss_dssp EEEEEECT-TSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-T-SCEEEEETTEEEEEECSSSCE--
T ss_pred eEEEEEcC-CCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-C-CCEEEEeccCCEEEEcCCCCc--
Confidence 78888877 66554 56655558899987654332110 012345688888765 3 345567777778888876521
Q ss_pred cccccCCcceEEee----cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC----CCCCeEEEEEeCCCC
Q 035500 519 VADARGNSSVATYY----DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM----HREPINVAKFSHHSP 590 (606)
Q Consensus 519 ~~~l~~~~~i~t~~----~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g----H~~~I~sV~fsP~g~ 590 (606)
...+. ....|.++...+++.+.+. +. +-+..||..+++........ ....|.++...++|.
T Consensus 439 ---------~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 507 (781)
T 3v9f_A 439 ---------FQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR 507 (781)
T ss_dssp ---------EEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC
T ss_pred ---------EEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC
Confidence 22222 2345888888777765554 44 56899999877654433211 146799999988887
Q ss_pred eEEEEEeCCCeEE
Q 035500 591 LCLLLLHLTTMSR 603 (606)
Q Consensus 591 ~LLaTgS~DgtIR 603 (606)
+.+++..+|..+
T Consensus 508 -lWigt~~~Gl~~ 519 (781)
T 3v9f_A 508 -FWIGTFGGGVGI 519 (781)
T ss_dssp -EEEEESSSCEEE
T ss_pred -EEEEEcCCCEEE
Confidence 454444456554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=89.70 E-value=16 Score=36.84 Aligned_cols=145 Identities=8% Similarity=-0.006 Sum_probs=74.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..+.+.+ ++..++++ .+|.|..- ...|+-=... ..++...+..+.+.+ ++..++.+...+..+-+|-.. .
T Consensus 124 ~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~tW~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG-~--- 194 (327)
T 2xbg_A 124 PRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKNWQAL-VQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQ-T--- 194 (327)
T ss_dssp EEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSSEEEE-ECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTC-S---
T ss_pred eEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCCCEEe-ecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCC-C---
Confidence 34455555 45555544 46654321 1123221111 125566789999987 445555544433344444311 0
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC---CCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM---HREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g---H~~~I~sV~fsP~g~~LLaTg 596 (606)
. -..+ .......+..+.+.+++..++ ++.+|.++.++...++.-..+..+ +...+.++.+.|.+. +++++
T Consensus 195 -t---W~~~-~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g 267 (327)
T 2xbg_A 195 -A---WEPH-NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAG 267 (327)
T ss_dssp -S---CEEE-ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEE
T ss_pred -c---eeEC-CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE-EEEEe
Confidence 0 1111 112234588898988877654 455788877753334332222211 234688999998765 56655
Q ss_pred eCCCe
Q 035500 597 HLTTM 601 (606)
Q Consensus 597 S~Dgt 601 (606)
. ++.
T Consensus 268 ~-~g~ 271 (327)
T 2xbg_A 268 G-AGA 271 (327)
T ss_dssp S-TTC
T ss_pred C-CCe
Confidence 5 443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=89.61 E-value=0.44 Score=54.35 Aligned_cols=149 Identities=6% Similarity=-0.028 Sum_probs=83.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-CeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-GCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-gtIklWDl~~~~~~ 518 (606)
+..+++.+..+++.++-...+.|.+++.........+. .......+|+++|.++.++++-... +.|..+++.....
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~--~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~- 531 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI- 531 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC--CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe--CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-
Confidence 56678887566666666677899999987544333222 2223467888888555555544333 6777766654211
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~~LLaT 595 (606)
..... .-..-+.|+|.|++. ++++-+..+.|..+|+........+.. +.-.....+++.. ..++.+
T Consensus 532 ---------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywt 600 (699)
T 1n7d_A 532 ---------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWT 600 (699)
T ss_dssp ---------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEE
T ss_pred ---------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEE
Confidence 11111 123357899998865 555556678899999874333222221 1112233444433 356666
Q ss_pred EeCCCeE
Q 035500 596 LHLTTMS 602 (606)
Q Consensus 596 gS~DgtI 602 (606)
....+.|
T Consensus 601 d~~~~~V 607 (699)
T 1n7d_A 601 DIINEAI 607 (699)
T ss_dssp CSTTTCE
T ss_pred eCCCCeE
Confidence 5554444
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=88.74 E-value=14 Score=38.54 Aligned_cols=139 Identities=5% Similarity=0.069 Sum_probs=83.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC---CCC---E-EEEEEC--CCeEEEEeCCCCCCCcc
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK---YPS---K-LVAGSD--SGCVRLFDLNHIPPKVA 520 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~---~~~---~-LaSgS~--DgtIklWDl~~~~~~~~ 520 (606)
.++++.....+-+.|||+ +|+.+..+.. +.+..+..-|. ++. + ++|.-. +++|.+|++........
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 346666667788999999 7888877642 45777766552 111 2 233333 58999998853211111
Q ss_pred cccCC-cceEEeecC-CCeEEEEE--ccCC-C-EEEEEeCCCcEEEEECC-------CCceeEEEcCCCCCCeEEEEEeC
Q 035500 521 DARGN-SSVATYYDF-EQLTSVHV--NSTD-D-QFLASGYSKNVALYDIN-------TEKPLQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 521 ~l~~~-~~i~t~~~~-~~V~sV~~--sp~g-~-~LaSgs~Dg~I~IWDlr-------t~k~v~~l~~gH~~~I~sV~fsP 587 (606)
..... .++ ... ..+..+++ +|.+ . +++....+|.+..|++. +.+.++.|.. .+.+-.+...+
T Consensus 115 ~i~~~~~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCE---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEET
T ss_pred eccccccCc---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcC
Confidence 11000 011 111 33556666 6654 3 67788888999999883 3366888884 45777888888
Q ss_pred CCCeEEEEEeCC
Q 035500 588 HSPLCLLLLHLT 599 (606)
Q Consensus 588 ~g~~LLaTgS~D 599 (606)
....+++ +-+|
T Consensus 190 ~~g~Lyv-~eEd 200 (355)
T 3amr_A 190 EYGRLYI-AEED 200 (355)
T ss_dssp TTTEEEE-EETT
T ss_pred CCCeEEE-eccc
Confidence 7776554 4443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.19 E-value=14 Score=36.52 Aligned_cols=110 Identities=9% Similarity=0.096 Sum_probs=74.0
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEe--ecCCCeEEEEEccCCCEEEEEeCCCc
Q 035500 480 GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATY--YDFEQLTSVHVNSTDDQFLASGYSKN 557 (606)
Q Consensus 480 gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~--~~~~~V~sV~~sp~g~~LaSgs~Dg~ 557 (606)
+-.+.+.+++|+|+++.+++....++.|...|... + -+..+ .+....-.|++.+++.++++.-.++.
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~----------v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~ 92 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-D----------LIRTIPLDFVKDLETIEYIGDNQFVISDERDYA 92 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-C----------EEEEEECSSCSSEEEEEECSTTEEEEEETTTTE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-C----------EEEEEecCCCCChHHeEEeCCCEEEEEECCCCc
Confidence 55568999999996544555566788888888773 1 23333 34456888999887776666656788
Q ss_pred EEEEECCCCce---eEEEcC-----CCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 558 VALYDINTEKP---LQLFTD-----MHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 558 I~IWDlrt~k~---v~~l~~-----gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
+.++++..... +..... .+....-.++|+|.+..++++.-.+.
T Consensus 93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p 143 (255)
T 3qqz_A 93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP 143 (255)
T ss_dssp EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS
T ss_pred EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC
Confidence 99998875432 223321 13345689999999988777665553
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=87.52 E-value=16 Score=44.18 Aligned_cols=147 Identities=13% Similarity=0.191 Sum_probs=88.1
Q ss_pred eeEEEEcCCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 440 PRQFEYNPSNPSLMAFGT----------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs----------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
+..+.|......+++.|+ ..|.|.+|++..++... +.....+++|++++-. ++ +|++|- .++|++
T Consensus 834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~l-v~~~~v~g~v~al~~~--~g-~Lla~i-g~~l~v 908 (1158)
T 3ei3_A 834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQT-VAEKEVKGAVYSMVEF--NG-KLLASI-NSTVRL 908 (1158)
T ss_dssp EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEE-EEEEEESSCEEEEEEE--TT-EEEEEE-TTEEEE
T ss_pred EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEE-EEEEEcCCcCEEEeee--CC-EEEEEc-CCEEEE
Confidence 444445443357999887 45889999987554333 3333557889999865 33 555443 578999
Q ss_pred EeCCCCCCCcccccCCcceE-EeecCCCeEEEEEccCCCEEEEEeCCCcEEE--EECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 510 FDLNHIPPKVADARGNSSVA-TYYDFEQLTSVHVNSTDDQFLASGYSKNVAL--YDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~-t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~I--WDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
|++...+ .++ .......|..+.....+++++.|..-..|.+ |+...++....-...+...++++.|-
T Consensus 909 y~l~~~~----------~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~l 978 (1158)
T 3ei3_A 909 YEWTTEK----------ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 978 (1158)
T ss_dssp EEECTTS----------CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEE
T ss_pred EECCCCc----------eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEE
Confidence 9998632 122 1111222333333335789998887666665 45544444444443466788888886
Q ss_pred CCCCeEEEEEeCCCeEE
Q 035500 587 HHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIR 603 (606)
.++. ++.+..+|.+.
T Consensus 979 d~~t--~l~aD~~gNl~ 993 (1158)
T 3ei3_A 979 DDDN--FLGAENAFNLF 993 (1158)
T ss_dssp ETTE--EEEEETTSEEE
T ss_pred ccCc--EEEEcCCCcEE
Confidence 5543 55677776654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=86.45 E-value=14 Score=36.23 Aligned_cols=144 Identities=6% Similarity=-0.078 Sum_probs=77.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE------EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA------CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v------~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
++.++|+| ++.+.|. .+|.+.-.+..+.... ..+-..+... -..+.|.| ++.+.++ .||.|.-|+-.
T Consensus 43 ~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 43 FKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp CSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred ceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 67899999 9987666 7787766666442211 1111112121 35777887 4454444 56988777653
Q ss_pred CCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc------eeEEEcCCCCCCeEEEEEe
Q 035500 514 HIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK------PLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k------~v~~l~~gH~~~I~sV~fs 586 (606)
+.. ...+... ....-. +-..+..|.+.|+|.+.+.. |+.++-+-..++. ....+....-..-+-+.|.
T Consensus 116 ~~~--~~~Wl~~-a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 116 QSD--TDNWIAR-ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CST--TCCHHHH-SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred cCC--CCceecc-ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 321 1122111 111111 23458999999999998888 6665443333221 1112221223344556788
Q ss_pred CCCCeEEEEE
Q 035500 587 HHSPLCLLLL 596 (606)
Q Consensus 587 P~g~~LLaTg 596 (606)
|++. +++..
T Consensus 191 ~~G~-l~~v~ 199 (236)
T 1tl2_A 191 SVGT-LFGVQ 199 (236)
T ss_dssp TTSC-EEEEE
T ss_pred CCCc-EEEEe
Confidence 8886 44443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=86.33 E-value=31 Score=37.26 Aligned_cols=123 Identities=14% Similarity=0.183 Sum_probs=84.9
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccc
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVAD 521 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~ 521 (606)
+.-.|| ..+.+|--. ..++.|||+++...+..+.+ ...|.-..|-. ++.|+-.+ +..|..|++...
T Consensus 70 sAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~---~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~------ 135 (494)
T 1bpo_A 70 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGE------ 135 (494)
T ss_dssp EEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEEC---SSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSS------
T ss_pred eeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceec---CCCceEEEecC--CCeEEEEc-CCeeEEecccCC------
Confidence 445889 667888776 78999999999988887654 34688889974 35665554 568999999763
Q ss_pred ccCCcceEEeecC-----CCeEEEEEccCCCEEEEEeC-------CCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 522 ARGNSSVATYYDF-----EQLTSVHVNSTDDQFLASGY-------SKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 522 l~~~~~i~t~~~~-----~~V~sV~~sp~g~~LaSgs~-------Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
..|++.|..+ .+|..-..+++.++++..|- .|.+.+|..+.+.. +.++ ||......+
T Consensus 136 ---s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ie-Ghaa~F~~~ 204 (494)
T 1bpo_A 136 ---SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE-GHAASFAQF 204 (494)
T ss_dssp ---CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEEC-CSEEEEEEE
T ss_pred ---CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chhe-eeeeeeEEE
Confidence 4577777643 44777777888887764432 37888999876543 3444 674444333
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=84.07 E-value=0.57 Score=49.68 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=16.2
Q ss_pred cccEEecccCCCcccccccccccCccccEEEccccc
Q 035500 148 HLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETR 183 (606)
Q Consensus 148 ~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~ 183 (606)
.|.+|.| .++|+.|+..+|..+++|+.|.+.+|.
T Consensus 249 ~L~~i~l--p~~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 249 GITTVKL--PNGVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp CCSEEEE--ETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred CccEEEe--CCCccEEChhHhhCCCCCCEEEeCCcc
Confidence 4444444 244555555555555555555554443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=80.62 E-value=27 Score=35.56 Aligned_cols=155 Identities=9% Similarity=0.038 Sum_probs=80.7
Q ss_pred eeEEEEcCCCCCEEEEEeC-------------CCcEEEEECCCC------------ceEEEEeccCCCCCEEEEEEeeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-------------DGEVIVINHENG------------NVACYIPSIGGTNSVLGLCWLKKY 494 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-------------DGtVrIWDi~tg------------~~v~~~~~~gH~~~V~~L~fsp~~ 494 (606)
...++|.| ++.+.++-+. .|.|.-++.... .....+ ..+|. ...+++|+|..
T Consensus 137 ~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~-a~G~r-np~g~a~d~~~ 213 (352)
T 2ism_A 137 GGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVY-SLGHR-NPQGLAWHPKT 213 (352)
T ss_dssp CCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEE-EECCS-EECCCEECTTT
T ss_pred CceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEE-EEcCC-CcccEEEECCC
Confidence 44678999 8876666432 256666665420 000111 12443 46788999855
Q ss_pred CCEEEEEECCCeE------EEEeCCCCCCCc----c---ccc-CCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 035500 495 PSKLVAGSDSGCV------RLFDLNHIPPKV----A---DAR-GNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVAL 560 (606)
Q Consensus 495 ~~~LaSgS~DgtI------klWDl~~~~~~~----~---~l~-~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~I 560 (606)
+.++++-.....+ .+.-+..+..-. . ... -..|+..+..+.....++| .++.++++.-..+.|..
T Consensus 214 g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~ 292 (352)
T 2ism_A 214 GELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLR 292 (352)
T ss_dssp CCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEE
Confidence 5555544332221 122222221000 0 000 0235556655556778888 46777777666778888
Q ss_pred EECCCCce------eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 561 YDINTEKP------LQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 561 WDlrt~k~------v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.++..... ...+- .--..+..+++.|+|.-.+++.+.+
T Consensus 293 v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~~~~ 336 (352)
T 2ism_A 293 LVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVTTSNRD 336 (352)
T ss_dssp EEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEEECSTT
T ss_pred EEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEEEeCCC
Confidence 77764331 12221 1236789999999997444443334
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.60 E-value=3 Score=43.27 Aligned_cols=114 Identities=8% Similarity=0.079 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEE--ECCCeEEEEeCCCCCCCcccccCCcc
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAG--SDSGCVRLFDLNHIPPKVADARGNSS 527 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSg--S~DgtIklWDl~~~~~~~~~l~~~~~ 527 (606)
++++.++.||.|.-+|.++|+....++.. ...++....-... .+..++.+ +.||.+..+|...+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~---------- 79 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ---------- 79 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE----------
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE----------
Confidence 48899999999999999999999987643 2123322211000 11233333 5799998888766311
Q ss_pred eEEee-----cCCCeEE--------EEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC
Q 035500 528 VATYY-----DFEQLTS--------VHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM 575 (606)
Q Consensus 528 i~t~~-----~~~~V~s--------V~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g 575 (606)
...+. ...++.. .--...+..+++|+.+|++.-.|+++|+.+..+..+
T Consensus 80 ~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 80 KLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred EeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 01111 1122221 000014678899999999999999999999988743
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=80.41 E-value=69 Score=34.64 Aligned_cols=150 Identities=10% Similarity=0.122 Sum_probs=84.6
Q ss_pred eeEEEEcCCCCCEEEEEe-------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEe--eCCCCEEEEEEC---CCeE
Q 035500 440 PRQFEYNPSNPSLMAFGT-------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWL--KKYPSKLVAGSD---SGCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fs--p~~~~~LaSgS~---DgtI 507 (606)
+..-..++ +.++++..| -.|.+.+|..+.+... .++ ||...-..+... +.....++-+.. .+.+
T Consensus 153 IInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 228 (494)
T 1bpo_A 153 IINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (494)
T ss_dssp EEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EEC--CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred EEEEEECC-CCCeEEEEeecccCCcccceEEEeeccccccc-hhe--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 33334455 555555332 2477889998865432 233 665333333221 100112333333 2789
Q ss_pred EEEeCCCCCCCcccccCCcceEEee-c---CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYY-D---FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~-~---~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
++-++.+......+.. ++.+..+- . .+--.+++.++.-..+..-+.-|.+.+||++++.++..-+ -..+.|...
T Consensus 229 hi~Ei~~~~~~~~~f~-kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr-Is~~~iF~t 306 (494)
T 1bpo_A 229 HIIEVGTPPTGNQPFP-KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVT 306 (494)
T ss_dssp EEEECSCCCTTCCCCC-CEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEE
T ss_pred EEEEcCCCccCCCCcc-ceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec-ccCCceEEe
Confidence 9999866422111221 22221111 1 1225678889888888888999999999999999987777 356777776
Q ss_pred EEeCCCCeEEEE
Q 035500 584 KFSHHSPLCLLL 595 (606)
Q Consensus 584 ~fsP~g~~LLaT 595 (606)
+-+....-+++.
T Consensus 307 ~~~~~~~Gi~~V 318 (494)
T 1bpo_A 307 APHEATAGIIGV 318 (494)
T ss_dssp EEETTTTEEEEE
T ss_pred cccCCCCcEEEE
Confidence 666554444433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 606 | ||||
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 7e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 6e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 |
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 42.0 bits (97), Expect = 7e-05
Identities = 25/221 (11%), Positives = 63/221 (28%), Gaps = 36/221 (16%)
Query: 137 IRKLNMVGRFMHLNTLSLDFCSSLASLHE--DCFSCMPYLMCLSMCETRIVNLWTTTAAI 194
IR + ++ + + + S + L++ I + +++
Sbjct: 11 IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI----SSL 66
Query: 195 SKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVEL 254
S + L L L K D +++ E +
Sbjct: 67 SGMENLRILSLGRNLIKKIENLD-----------AVADTLEELWISYNQIASLSGIEKLV 115
Query: 255 PKYLRTMNLMELSSCLSPNLNGHAEMLDEVNDSNEFPGGAHKQDLMDANVKLKKYISHHP 314
+ M+ ++++ + + L+++ + + +
Sbjct: 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG-------------------NPLYNDY 156
Query: 315 SPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVFA 355
YR ++ LP L+ LD +P+ +RE A
Sbjct: 157 KENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVARG 197
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 12/121 (9%), Positives = 39/121 (32%), Gaps = 11/121 (9%)
Query: 475 YIPSI----GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVAT 530
+I + + + + V+ S G ++++D + + + S
Sbjct: 3 FIATANAGKAHDADIFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH 59
Query: 531 YYDFEQLTSVHV---NSTDDQFLASG-YSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586
+ + ++ + +A+ +S ++ Y I E + + ++
Sbjct: 60 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKK 119
Query: 587 H 587
H
Sbjct: 120 H 120
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 6e-04
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 309 YISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVF 354
Y+ +P+ +KHYR Y+I +PQ+ VLD + +R+ A+ +F
Sbjct: 116 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMF 161
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.001
Identities = 10/56 (17%), Positives = 19/56 (33%)
Query: 531 YYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586
Y L+++ D L SG +Y++ + K + + I F
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK 333
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.9 bits (86), Expect = 0.003
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS 504
+N + +A + EV + V G+ W +++V
Sbjct: 15 WNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTD 72
Query: 505 GCVRLFDLNHIPPK 518
++ L K
Sbjct: 73 RNAYVWTLKGRTWK 86
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 606 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.86 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.85 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.84 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.83 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.83 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.82 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.81 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.81 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.81 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.81 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.8 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.78 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.78 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.77 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.76 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.76 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.74 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.73 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.73 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.73 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.72 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.71 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.71 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.71 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.67 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.67 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.59 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.57 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.56 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.53 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.39 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.31 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.28 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.27 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.26 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.24 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.23 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.2 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.16 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.09 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.09 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.03 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.0 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.79 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.69 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.65 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.64 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.63 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.61 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.59 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.57 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.53 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.52 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.5 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.46 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.41 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.29 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.28 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 98.18 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.07 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.04 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.03 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.97 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.92 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 97.92 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.88 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 97.85 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 97.79 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 97.77 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 97.77 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 97.73 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.7 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.65 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.61 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 97.59 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 97.58 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 97.58 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.57 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.53 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.51 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.49 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.48 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 97.31 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.25 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.2 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.97 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 96.91 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 96.86 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.86 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 96.83 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 96.81 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.77 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.63 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.62 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.57 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 96.55 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.53 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 96.49 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 96.24 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 96.23 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 96.16 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.15 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.13 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 95.85 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 95.52 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.52 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 95.3 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 94.73 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.53 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 93.95 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 92.76 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 92.72 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 91.6 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 91.58 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.47 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.72 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 90.18 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 90.13 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 89.77 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.7 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 89.69 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 89.26 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 89.11 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 87.72 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 87.62 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 86.22 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 84.3 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 82.66 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 81.28 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.86 E-value=1.4e-20 Score=186.41 Aligned_cols=149 Identities=17% Similarity=0.245 Sum_probs=133.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+....+.+ .+.++++|+.||.|++||+++++.+..+. +|.+.|.+++|+| ++.+|++|+.||+|++||++..
T Consensus 187 ~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~---- 258 (340)
T d1tbga_ 187 VMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFT--GHESDINAICFFP-NGNAFATGSDDATCRLFDLRAD---- 258 (340)
T ss_dssp EEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT----
T ss_pred Eeeecccc-ccceeEEeecCceEEEEECCCCcEEEEEe--CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeeccc----
Confidence 56677888 88899999999999999999999887665 8999999999999 6789999999999999999873
Q ss_pred ccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
..+..+. +..+|.+++|+|+++++++|+.||.|++||+++++.+..+. +|.+.|++++|+|++.+ ++||
T Consensus 259 ------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~H~~~V~~l~~s~d~~~-l~s~ 330 (340)
T d1tbga_ 259 ------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMA-VATG 330 (340)
T ss_dssp ------EEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSC-EEEE
T ss_pred ------ccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCE-EEEE
Confidence 3444443 34559999999999999999999999999999999999999 89999999999999985 7899
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
|.||+|+.
T Consensus 331 s~Dg~v~i 338 (340)
T d1tbga_ 331 SWDSFLKI 338 (340)
T ss_dssp ETTSCEEE
T ss_pred ccCCEEEE
Confidence 99999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.85 E-value=8.3e-21 Score=196.14 Aligned_cols=154 Identities=12% Similarity=0.090 Sum_probs=129.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+|++|+| +++++|+|+.||.|+|||.++++......+.+|.++|.+++|+| ++++|+|||.|++|++||+....
T Consensus 10 It~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~--- 84 (371)
T d1k8kc_ 10 ISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRT--- 84 (371)
T ss_dssp CCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTE---
T ss_pred eEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeecccc---
Confidence 78999999 99999999999999999998887655555669999999999999 67899999999999999998632
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce---eEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP---LQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~---v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
..+...+. +...|.+++|+|+++.+++|+.|+++++|++..... ......+|...|.+++|+|++.+ +++
T Consensus 85 -----~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~s 158 (371)
T d1k8kc_ 85 -----WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL-LAA 158 (371)
T ss_dssp -----EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE-EEE
T ss_pred -----cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccc-eec
Confidence 12333444 356699999999999999999999999999887643 23333479999999999999985 799
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
|+.|++|+.
T Consensus 159 ~s~D~~v~v 167 (371)
T d1k8kc_ 159 GSCDFKCRI 167 (371)
T ss_dssp EETTSCEEE
T ss_pred cccCcEEEE
Confidence 999999985
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=7.2e-20 Score=177.80 Aligned_cols=150 Identities=15% Similarity=0.215 Sum_probs=134.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-------------------CCEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-------------------PSKLVA 500 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-------------------~~~LaS 500 (606)
+.+++|+| ++.++++|+.||.|++|+..++.....+. +|...+.+++|.|.. +..+++
T Consensus 146 ~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (317)
T d1vyhc1 146 VRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222 (317)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred ceeeeccc-CCCEEEEEeCCCeEEEEeeccceeeEEEe--cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence 77889999 89999999999999999999988877655 889999999998643 346899
Q ss_pred EECCCeEEEEeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 035500 501 GSDSGCVRLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP 579 (606)
Q Consensus 501 gS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~ 579 (606)
|+.|++|++||.++ ..++.++.+ ..+|.+++|+|++++|++|+.||.|++||+++++++..+. +|.+.
T Consensus 223 ~~~d~~i~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~ 291 (317)
T d1vyhc1 223 GSRDKTIKMWDVST----------GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHF 291 (317)
T ss_dssp EETTSEEEEEETTT----------TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSC
T ss_pred ccCCCEEEEEECCC----------CcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc-CCCCC
Confidence 99999999999998 456777775 5669999999999999999999999999999999999999 89999
Q ss_pred eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++++|+|++++ ++|||.|++|++
T Consensus 292 V~~~~~s~~~~~-l~s~s~Dg~i~i 315 (317)
T d1vyhc1 292 VTSLDFHKTAPY-VVTGSVDQTVKV 315 (317)
T ss_dssp EEEEEECSSSSC-EEEEETTSEEEE
T ss_pred EEEEEEcCCCCE-EEEEeCCCeEEE
Confidence 999999999985 789999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.83 E-value=9e-20 Score=185.14 Aligned_cols=151 Identities=11% Similarity=0.101 Sum_probs=130.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC--CCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD--SGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~--DgtIklWDl~~~~~ 517 (606)
|++++|+| ++++||+|+.||+|+|||+.++.......+.+|.++|.+++|+| ++..+++++. +..+++|++...
T Consensus 61 v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~-- 136 (311)
T d1nr0a1 61 TTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTG-- 136 (311)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTC--
T ss_pred EEEEEEeC-CCCeEeccccCceEeeeeeeccccccccccccccCccccccccc-cccccccccccccccccccccccc--
Confidence 88999999 89999999999999999999877654445568999999999998 5678888875 456999999874
Q ss_pred CcccccCCcceEEeec-CCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 518 KVADARGNSSVATYYD-FEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.+..++.+ ...|.+++|+|+++ .+++|+.|+.|++||+++++....+. +|...|++++|+|++. ++++
T Consensus 137 --------~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~-~~~~~i~~v~~~p~~~-~l~~ 206 (311)
T d1nr0a1 137 --------TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGS-LFAS 206 (311)
T ss_dssp --------CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSS-EEEE
T ss_pred --------cccccccccccccccccccccceeeecccccccccccccccccccccccc-cccccccccccCcccc-cccc
Confidence 33444554 45699999999987 58899999999999999999999988 7999999999999998 5889
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
|+.|+.|+.
T Consensus 207 ~~~d~~v~~ 215 (311)
T d1nr0a1 207 TGGDGTIVL 215 (311)
T ss_dssp EETTSCEEE
T ss_pred ccccccccc
Confidence 999999875
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.3e-19 Score=182.22 Aligned_cols=147 Identities=11% Similarity=0.076 Sum_probs=131.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| ++..+++|+.||.|++||+++++.+..+ .|.+.|.+++|+| ++..+++|+.|+.+++||++..
T Consensus 186 v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~---~~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~---- 256 (337)
T d1gxra_ 186 ASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQH---DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKP---- 256 (337)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEE---ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSS----
T ss_pred cccccccc-cccccccccccccccccccccceeeccc---ccccceEEEEEcc-cccccceecccccccccccccc----
Confidence 78899999 8899999999999999999999877654 6788999999998 6789999999999999999873
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.......|...|++++|+|++++|++|+.||.|++||+.+++.+..+. |...|++++|+|++++ ++|||.|
T Consensus 257 ------~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~d~~~-l~t~s~D 327 (337)
T d1gxra_ 257 ------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKY-IVTGSGD 327 (337)
T ss_dssp ------CEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCE-EEEEETT
T ss_pred ------ccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc--CCCCEEEEEEeCCCCE-EEEEeCC
Confidence 344455567789999999999999999999999999999999988776 7899999999999985 7899999
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
++||+
T Consensus 328 ~~I~v 332 (337)
T d1gxra_ 328 KKATV 332 (337)
T ss_dssp SCEEE
T ss_pred CeEEE
Confidence 99985
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.82 E-value=6.4e-19 Score=174.36 Aligned_cols=159 Identities=14% Similarity=0.168 Sum_probs=132.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++++||+|+.||+|+|||..+++.+..+. +|...|.+++|+| ++.++++|+.|+++++|+........
T Consensus 58 I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~--~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~ 133 (340)
T d1tbga_ 58 IYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIP--LRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNV 133 (340)
T ss_dssp EEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEE--CSCSCEEEEEECT-TSSEEEEEETTCCEEEEESSSSCSCC
T ss_pred EEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEe--cccccEEeeEeec-cceeeeeecccceeeccccccccccc
Confidence 88999999 99999999999999999999999888766 8999999999998 67899999999999999976643211
Q ss_pred cc---c--------------------------------cCCcce-EEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 035500 520 AD---A--------------------------------RGNSSV-ATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDI 563 (606)
Q Consensus 520 ~~---l--------------------------------~~~~~i-~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDl 563 (606)
.. + ...... ........+....+.+.+.++++|+.|+.|++||+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~ 213 (340)
T d1tbga_ 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp CEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEEC
Confidence 00 0 000011 11123455788888999999999999999999999
Q ss_pred CCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 564 NTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 564 rt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++++++..+. +|...|++++|+|++. ++++|+.|++|+.
T Consensus 214 ~~~~~~~~~~-~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~ 252 (340)
T d1tbga_ 214 REGMCRQTFT-GHESDINAICFFPNGN-AFATGSDDATCRL 252 (340)
T ss_dssp TTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred CCCcEEEEEe-CCCCCeEEEEECCCCC-EEEEEeCCCeEEE
Confidence 9999999999 7999999999999998 5889999999885
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.81 E-value=6.2e-19 Score=178.85 Aligned_cols=151 Identities=14% Similarity=0.172 Sum_probs=130.6
Q ss_pred eeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL--DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~--DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.+++|+| +++++++++. ++.++||++++++....+ .+|.+.|.+++|+|++...+++|+.||+|++||++.
T Consensus 105 v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l--~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~--- 178 (311)
T d1nr0a1 105 VKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNL--TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--- 178 (311)
T ss_dssp EEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCC--CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---
T ss_pred cccccccc-cccccccccccccccccccccccccccccc--cccccccccccccccceeeecccccccccccccccc---
Confidence 78999999 8899999886 466999999998877654 489999999999996666799999999999999998
Q ss_pred CcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc------CCCCCCeEEEEEeCCCC
Q 035500 518 KVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT------DMHREPINVAKFSHHSP 590 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~------~gH~~~I~sV~fsP~g~ 590 (606)
......+.. ..+|+++.|+|+++++++++.|+.|++||.++++.+..++ .+|...|++++|+|++.
T Consensus 179 -------~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~ 251 (311)
T d1nr0a1 179 -------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 251 (311)
T ss_dssp -------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred -------cccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCC
Confidence 345556654 5679999999999999999999999999999998877664 25889999999999998
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
+ ++|||.|++|++
T Consensus 252 ~-l~tgs~Dg~v~i 264 (311)
T d1nr0a1 252 K-IASASADKTIKI 264 (311)
T ss_dssp E-EEEEETTSEEEE
T ss_pred E-EEEEeCCCeEEE
Confidence 5 789999999986
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=5.7e-19 Score=179.90 Aligned_cols=162 Identities=20% Similarity=0.288 Sum_probs=128.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-----ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP-----SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~-----~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
..++.++|.+++++++|+.||.|++||..++.....+. ..+|.+.|.+++|+| ++.+|++|+.||.|++||++.
T Consensus 207 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~ 285 (388)
T d1erja_ 207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQN 285 (388)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECCCcEEEEeccC
Confidence 45667888799999999999999999999988766543 247899999999998 678999999999999999987
Q ss_pred CCCCcccc--cCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe-----
Q 035500 515 IPPKVADA--RGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS----- 586 (606)
Q Consensus 515 ~~~~~~~l--~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs----- 586 (606)
........ .......... |...|.+++|+|+++++++|+.||+|++||+++++++..++ +|.+.|+++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~-~H~~~V~~~~~~~~~~~ 364 (388)
T d1erja_ 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSL 364 (388)
T ss_dssp -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSCTT
T ss_pred CccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe-CCCCCEEEEEEecCccc
Confidence 53321110 1112223333 45679999999999999999999999999999999999999 899999999864
Q ss_pred -CCCCeEEEEEeCCCeEEE
Q 035500 587 -HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 587 -P~g~~LLaTgS~DgtIRc 604 (606)
|++. +++|||.||+||+
T Consensus 365 spd~~-~l~s~s~Dg~I~i 382 (388)
T d1erja_ 365 GPEYN-VFATGSGDCKARI 382 (388)
T ss_dssp CTTCE-EEEEEETTSEEEE
T ss_pred CCCCC-EEEEEeCCCEEEE
Confidence 5665 6899999999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.81 E-value=7.3e-19 Score=181.32 Aligned_cols=155 Identities=8% Similarity=0.006 Sum_probs=128.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++++|++|+.||+|+|||+.++.........+|...|.+++|+| ++..|++|+.|++|++|++......
T Consensus 54 V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~- 130 (371)
T d1k8kc_ 54 VTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW- 130 (371)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE-
T ss_pred EEEEEECC-CCCEEEEEECCCeEEEEeeccccccccccccccccccccccccc-ccccceeecccCcceeeeeeccccc-
Confidence 88999999 89999999999999999999887766666678999999999999 6789999999999999998874210
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc------------------eeEEEcCCCCCCe
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK------------------PLQLFTDMHREPI 580 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k------------------~v~~l~~gH~~~I 580 (606)
........ +...|.+++|+|++.+|++|+.|++|++||..... .+.... +|...|
T Consensus 131 -----~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 204 (371)
T d1k8kc_ 131 -----WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWV 204 (371)
T ss_dssp -----EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCE
T ss_pred -----ccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeecc-CccCcE
Confidence 00111222 35669999999999999999999999999987532 334445 699999
Q ss_pred EEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 581 NVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 581 ~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++++|+|++.. +++++.|++|+.
T Consensus 205 ~~~~~s~~g~~-l~s~~~d~~i~i 227 (371)
T d1k8kc_ 205 HGVCFSANGSR-VAWVSHDSTVCL 227 (371)
T ss_dssp EEEEECSSSSE-EEEEETTTEEEE
T ss_pred EEEEeeccccc-ccccccCCcceE
Confidence 99999999985 789999999875
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.81 E-value=1.7e-18 Score=167.86 Aligned_cols=149 Identities=18% Similarity=0.269 Sum_probs=133.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++++||||+.||+|+|||+++++.+..+. +|.+.|.+++|+| ++..+++++.++++.+|+....
T Consensus 20 I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~h~~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---- 91 (317)
T d1vyhc1 20 VTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLK--GHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGF---- 91 (317)
T ss_dssp EEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEEC--CCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSS----
T ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEEEEEe--CCCCcEEEEeeec-cccccccccccccccccccccc----
Confidence 88999999 89999999999999999999999888765 8999999999998 6789999999999999998873
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.....+. +...+.++.|+|+++.+++++.|+.+++||+++++.+..+. +|...+.+++|+|++. ++++|+.
T Consensus 92 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~~ 163 (317)
T d1vyhc1 92 ------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGT-LIASCSN 163 (317)
T ss_dssp ------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSS-EEEEEET
T ss_pred ------ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc-cCCCcceeeecccCCC-EEEEEeC
Confidence 2233333 45669999999999999999999999999999999999998 7999999999999988 5899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|+.
T Consensus 164 d~~v~~ 169 (317)
T d1vyhc1 164 DQTVRV 169 (317)
T ss_dssp TSCEEE
T ss_pred CCeEEE
Confidence 999885
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=9.6e-19 Score=181.87 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=122.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe----ccCCCCCEEEEEEeeCCCCEEEEEECCCe---EEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP----SIGGTNSVLGLCWLKKYPSKLVAGSDSGC---VRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~----~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt---IklWDl 512 (606)
+.+++|+| ++ ++|+|+.||+|+|||+++++.+..++ +.+|..+|.+++|+| ++.+|++||.|++ |++||+
T Consensus 187 ~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~ 263 (393)
T d1sq9a_ 187 ATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYET 263 (393)
T ss_dssp CCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEET
T ss_pred EEEEEECC-CC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeeeccc
Confidence 77899999 76 99999999999999999998876554 347999999999999 6789999999975 999999
Q ss_pred CCCCCCccc---ccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC---------
Q 035500 513 NHIPPKVAD---ARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP--------- 579 (606)
Q Consensus 513 ~~~~~~~~~---l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~--------- 579 (606)
..+...... .........+. |...|++++|+|++++|+|||.|++|++||+++++.+.++. +|.+.
T Consensus 264 ~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~-gH~~~v~~~~~~~~ 342 (393)
T d1sq9a_ 264 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN-MHCDDIEIEEDILA 342 (393)
T ss_dssp TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCGGGCSSGGGCCC
T ss_pred ccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC-CcCCcccCCccEEE
Confidence 874321000 00011111222 55679999999999999999999999999999999999998 78654
Q ss_pred ------------eEEEEEeCCC---------CeEEEEEeCCCeEEE
Q 035500 580 ------------INVAKFSHHS---------PLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 ------------I~sV~fsP~g---------~~LLaTgS~DgtIRc 604 (606)
++++.|.+.+ ...+++++.|+.||.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~ 388 (393)
T d1sq9a_ 343 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 388 (393)
T ss_dssp BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred ECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEE
Confidence 4556665432 123678888888874
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=9.8e-18 Score=169.94 Aligned_cols=150 Identities=10% Similarity=0.143 Sum_probs=129.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++++|++|+.||+|++||+............+|...+..++|+| ++..+++++.|+.|++||+...
T Consensus 100 I~~v~~s~-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~---- 173 (337)
T d1gxra_ 100 IRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQ---- 173 (337)
T ss_dssp EEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT----
T ss_pred EEEEEEcC-CCCEEEEeeccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc----
Confidence 88999999 99999999999999999987654443344558999999999998 6789999999999999999873
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.+..... +...|.+++|++++..+++|+.|+.+++||+++++.+..+. |...|++++|+|++.. +++|+.
T Consensus 174 ------~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~-l~~~~~ 244 (337)
T d1gxra_ 174 ------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW-LAVGME 244 (337)
T ss_dssp ------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE-EEEEET
T ss_pred ------cccccccccccccccccccccccccccccccccccccccccceeecccc--cccceEEEEEcccccc-cceecc
Confidence 3445555 45679999999999999999999999999999999988876 7899999999999985 789999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.+++
T Consensus 245 d~~i~i 250 (337)
T d1gxra_ 245 SSNVEV 250 (337)
T ss_dssp TSCEEE
T ss_pred cccccc
Confidence 998875
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.78 E-value=8.3e-18 Score=165.84 Aligned_cols=160 Identities=12% Similarity=0.087 Sum_probs=125.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++++||+|+.||+|++||+++++....+. .+|...|.+++|+|+ + .+++++.|+++++|+........
T Consensus 15 V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~-~~h~~~v~~v~~~~~-g-~~~~~~~d~~v~~~~~~~~~~~~ 90 (299)
T d1nr0a2 15 ITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFP-DVHATMITGIKTTSK-G-DLFTVSWDDHLKVVPAGGSGVDS 90 (299)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSS-CSCSSCEEEEEECTT-S-CEEEEETTTEEEEECSSSSSSCT
T ss_pred cEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEc-CCCCCcEEEEEeecc-c-eeecccceeeEEEeccCCccccc
Confidence 88999999 99999999999999999999998876553 479999999999984 3 47788899999999976532110
Q ss_pred c-----cc-----------cC-------CcceE--------EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q 035500 520 A-----DA-----------RG-------NSSVA--------TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP 568 (606)
Q Consensus 520 ~-----~l-----------~~-------~~~i~--------t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~ 568 (606)
. .. .+ ...+. .......+.+++|+|+++++++|+.|+.|++||+++++.
T Consensus 91 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~ 170 (299)
T d1nr0a2 91 SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 170 (299)
T ss_dssp TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00 00 00111 112234578999999999999999999999999998876
Q ss_pred eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 569 LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 569 v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
......+|...|++++|+|++.+ +++|+.|+.|+.
T Consensus 171 ~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~ 205 (299)
T d1nr0a2 171 SEVKTIVHPAEITSVAFSNNGAF-LVATDQSRKVIP 205 (299)
T ss_dssp EEEEEEECSSCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred ccccccccccccccccccccccc-cccccccccccc
Confidence 55444469999999999999985 788999998875
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=5.4e-18 Score=165.76 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=63.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE-EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC-YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~-~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
|++++|+| ++++||+|+.||+|+|||++++.... .....+|.++|.+++|+|.++..+++|+.||+|++|+....
T Consensus 14 I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~ 89 (342)
T d1yfqa_ 14 ISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89 (342)
T ss_dssp EEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred EEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc
Confidence 78999999 89999999999999999987654332 22334799999999999976678999999999999998653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.76 E-value=1.1e-17 Score=165.04 Aligned_cols=153 Identities=10% Similarity=0.118 Sum_probs=120.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| +++++++|+.||.|++||+++++.... ....|...|.+++|+| ++.++++++.|+.|++||+.....
T Consensus 139 ~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~-- 213 (299)
T d1nr0a2 139 SSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEV-KTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFE-- 213 (299)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEE-EEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTE--
T ss_pred cccccccc-ccccccccccccccccccccccccccc-cccccccccccccccc-cccccccccccccccccccccccc--
Confidence 67889999 899999999999999999987765543 3348899999999998 668999999999999999987422
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee--EEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPL--QLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v--~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
......+. |..+|++++|+|+++++++|+.||.|++||++++... ......|...|+++.|.+ +. .++||
T Consensus 214 -----~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~ 286 (299)
T d1nr0a2 214 -----LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ET-TIVSA 286 (299)
T ss_dssp -----ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-TT-EEEEE
T ss_pred -----ccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC-CC-EEEEE
Confidence 11122333 3466999999999999999999999999999987543 233322445677776654 55 47889
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
|.|++||.
T Consensus 287 s~D~~i~i 294 (299)
T d1nr0a2 287 GQDSNIKF 294 (299)
T ss_dssp ETTSCEEE
T ss_pred eCCCEEEE
Confidence 99999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=3.2e-17 Score=166.74 Aligned_cols=150 Identities=13% Similarity=0.211 Sum_probs=125.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe----------------ccCCCCCEEEEEEeeCCCCEEEEEEC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP----------------SIGGTNSVLGLCWLKKYPSKLVAGSD 503 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~----------------~~gH~~~V~~L~fsp~~~~~LaSgS~ 503 (606)
|+|++|+| +|++||+|+ ||+|+|||+.+++.+..+. ..+|...|.+++|+| ++.+|++|+.
T Consensus 65 V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~~ 141 (388)
T d1erja_ 65 VCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAE 141 (388)
T ss_dssp CCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEEEEET
T ss_pred EEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC-CCCcceeccc
Confidence 88999999 999999987 8999999999888765443 235778899999999 6789999999
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV 582 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s 582 (606)
||+|++||... ...+..+. |...|.+++|++++..+++|+.++.+++||.++........ +.....+
T Consensus 142 dg~v~i~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~ 209 (388)
T d1erja_ 142 DRLIRIWDIEN----------RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTT 209 (388)
T ss_dssp TSCEEEEETTT----------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEE
T ss_pred ccccccccccc----------cccccccccccccccccccccccccccccccceeeeeeeccccccccccc--ccccccc
Confidence 99999999987 34555555 45669999999999999999999999999999988877776 4456667
Q ss_pred EEEeCCCCeEEEEEeCCCeEEE
Q 035500 583 AKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.++|....++++|+.|+.|+.
T Consensus 210 ~~~~~~~~~~l~~~~~d~~i~i 231 (388)
T d1erja_ 210 VAVSPGDGKYIAAGSLDRAVRV 231 (388)
T ss_dssp EEECSTTCCEEEEEETTSCEEE
T ss_pred ccccCCCCCeEEEEcCCCeEEE
Confidence 7777765567999999999875
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=3.3e-17 Score=166.16 Aligned_cols=153 Identities=12% Similarity=0.059 Sum_probs=120.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP-SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~-~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+|..+.++++|+.||.|++||...++...... ..+|...|.+++|+|+.+..+++|+.||.|++||++.+
T Consensus 162 v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~--- 238 (325)
T d1pgua1 162 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG--- 238 (325)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---
T ss_pred cccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc---
Confidence 78899999666678899999999999998877655443 34788899999999977889999999999999999873
Q ss_pred cccccCCcceEEeecC-CCe----EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC--eEEEEEeCCCCe
Q 035500 519 VADARGNSSVATYYDF-EQL----TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP--INVAKFSHHSPL 591 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V----~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~--I~sV~fsP~g~~ 591 (606)
..+.++.++ .++ .++.| |++.+|++++.|++|++||+++++++..+. .|... +..+++.+.+..
T Consensus 239 -------~~~~~l~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 309 (325)
T d1pgua1 239 -------EFLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWT-LDKQQLGNQQVGVVATGNG 309 (325)
T ss_dssp -------CEEEECCBTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCTTCGGGCEEEEEEEETT
T ss_pred -------cccccccccccccccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEE-ecCCcccCeEEEEEECCCC
Confidence 456666643 334 44444 578999999999999999999999988887 45443 445555444433
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
.+++||.|++|+.
T Consensus 310 ~l~s~s~dg~i~v 322 (325)
T d1pgua1 310 RIISLSLDGTLNF 322 (325)
T ss_dssp EEEEEETTSCEEE
T ss_pred EEEEEECCCEEEE
Confidence 5789999999986
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=4e-17 Score=161.11 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=117.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.++.|+| ++.++++|+.||+|++||.+++.....+. +|...|.+++|++ .++++|+.||+|++||++..
T Consensus 204 ~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~---- 273 (355)
T d1nexb2 204 IYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQ--GHTALVGLLRLSD---KFLVSAAADGSIRGWDANDY---- 273 (355)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCCCEEEECS---SEEEEECTTSEEEEEETTTC----
T ss_pred cccccccc-cceeeecccccceEEeeeccccccccccc--ccccccccccccc---ceeeeeeccccccccccccc----
Confidence 67788999 88999999999999999999999887665 9999999999975 58999999999999999873
Q ss_pred ccccCCcceEEeecCCCeEEE-EEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQLTSV-HVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV-~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...... |+..+.++ .+++++.++++| .|++|++||+++++.+.....+|.+.|++++|+|+ .++++++.
T Consensus 274 ------~~~~~~-~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~ 343 (355)
T d1nexb2 274 ------SRKFSY-HHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEK 343 (355)
T ss_dssp ------CEEEEE-ECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT--EEEEEEES
T ss_pred ------ceeccc-ccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC--eEEEEEEC
Confidence 222222 34444444 456666766665 48999999999999886544479999999999985 47889999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
||.+.+
T Consensus 344 dg~~~l 349 (355)
T d1nexb2 344 DGQSFL 349 (355)
T ss_dssp SSCEEE
T ss_pred CCcEEE
Confidence 998754
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=7.8e-17 Score=158.13 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=115.7
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccc
Q 035500 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADA 522 (606)
Q Consensus 443 lafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l 522 (606)
..+++ ++.++++|+.||+|++||++.++.+..+. +|...|.++.+++ +++++|+.||+|++||+...
T Consensus 181 ~~~~~-~~~~l~s~~~dg~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~------- 247 (342)
T d2ovrb2 181 YSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLT--GHQSLTSGMELKD---NILVSGNADSTVKIWDIKTG------- 247 (342)
T ss_dssp EEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEEC--CCCSCEEEEEEET---TEEEEEETTSCEEEEETTTC-------
T ss_pred ccccC-CCCEEEEEeCCCeEEEeecccceeeeEec--ccccceeEEecCC---CEEEEEcCCCEEEEEecccc-------
Confidence 34555 77899999999999999999999887655 8999999998875 59999999999999999883
Q ss_pred cCCcceEEeec----CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc----CCCCCCeEEEEEeCCCCeEEE
Q 035500 523 RGNSSVATYYD----FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT----DMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 523 ~~~~~i~t~~~----~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~----~gH~~~I~sV~fsP~g~~LLa 594 (606)
.....+.. ...+.+++++ ++++++|+.||+|++||+++++.++.+. .+|...|++++|+|++. ++|
T Consensus 248 ---~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~-~la 321 (342)
T d2ovrb2 248 ---QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL-VCA 321 (342)
T ss_dssp ---CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE-EEE
T ss_pred ---cccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC-EEE
Confidence 33444442 2346666664 6799999999999999999999988774 25778899999999886 689
Q ss_pred EEeCCCe
Q 035500 595 LLHLTTM 601 (606)
Q Consensus 595 TgS~Dgt 601 (606)
+|+.||+
T Consensus 322 ~g~~dGt 328 (342)
T d2ovrb2 322 VGSRNGT 328 (342)
T ss_dssp EECSSSS
T ss_pred EEeCCCC
Confidence 9999986
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=2.2e-16 Score=155.64 Aligned_cols=154 Identities=13% Similarity=0.164 Sum_probs=121.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++|+++ ++++||||+.||+|+|||+.+++.+..+. +|.+.|++++|+|+ +.|+||+.||+|++|+........
T Consensus 16 itc~~~---~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~--~H~~~V~~l~~s~~--~~l~s~s~D~~i~iw~~~~~~~~~ 88 (355)
T d1nexb2 16 ITCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLS--GHDGGVWALKYAHG--GILVSGSTDRTVRVWDIKKGCCTH 88 (355)
T ss_dssp EEEEEE---ETTEEEEEETTTEEEEEETTTTEEEEEEE--CCSSCEEEEEEETT--TEEEEEETTCCEEEEETTTTEEEE
T ss_pred EEEEEE---CCCEEEEEeCCCeEEEEECCCCcEEEEEE--CCCCCEEEEEEcCC--CEEEEEeccccccccccccccccc
Confidence 456666 56899999999999999999999988766 99999999999973 589999999999999876542100
Q ss_pred --------------------------------ccc---------------------------------------------
Q 035500 520 --------------------------------ADA--------------------------------------------- 522 (606)
Q Consensus 520 --------------------------------~~l--------------------------------------------- 522 (606)
..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 168 (355)
T d1nexb2 89 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168 (355)
T ss_dssp EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEE
T ss_pred ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccc
Confidence 000
Q ss_pred --------------------cCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeE
Q 035500 523 --------------------RGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPIN 581 (606)
Q Consensus 523 --------------------~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~ 581 (606)
.....+.... +...+.++.|+|.++.+++++.|+.|++||.+++..+..+. +|...|+
T Consensus 169 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~ 247 (355)
T d1nexb2 169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVG 247 (355)
T ss_dssp EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCCC
T ss_pred cccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc-ccccccc
Confidence 0000111112 23447788899999999999999999999999999999999 8999999
Q ss_pred EEEEeCCCCeEEEEEeCCCeEEE
Q 035500 582 VAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 582 sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+++|++ . .+++|+.|++|+.
T Consensus 248 ~~~~~~--~-~l~~~~~dg~i~i 267 (355)
T d1nexb2 248 LLRLSD--K-FLVSAAADGSIRG 267 (355)
T ss_dssp EEEECS--S-EEEEECTTSEEEE
T ss_pred cccccc--c-eeeeeeccccccc
Confidence 999975 3 5899999999985
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=1e-16 Score=166.24 Aligned_cols=152 Identities=10% Similarity=0.123 Sum_probs=117.7
Q ss_pred eeEEEEcCC----CCCEEEEEeCCCcEEEEECCCCce------------E----EEEeccCCCCCEEEEEEeeCCCCEEE
Q 035500 440 PRQFEYNPS----NPSLMAFGTLDGEVIVINHENGNV------------A----CYIPSIGGTNSVLGLCWLKKYPSKLV 499 (606)
Q Consensus 440 V~slafsP~----dg~~LaSGs~DGtVrIWDi~tg~~------------v----~~~~~~gH~~~V~~L~fsp~~~~~La 499 (606)
+..++|.+. .+.++++++.||+|++|++..... . .......+...+.+++|+|+ .+|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d--g~la 199 (393)
T d1sq9a_ 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--GLIA 199 (393)
T ss_dssp EEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--SEEE
T ss_pred eEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCC--CEEE
Confidence 445667662 246899999999999999642110 0 01112245667889999984 4899
Q ss_pred EEECCCeEEEEeCCCCCCCcccccCCcceEEe------e-cCCCeEEEEEccCCCEEEEEeCCCc---EEEEECCCCcee
Q 035500 500 AGSDSGCVRLFDLNHIPPKVADARGNSSVATY------Y-DFEQLTSVHVNSTDDQFLASGYSKN---VALYDINTEKPL 569 (606)
Q Consensus 500 SgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~------~-~~~~V~sV~~sp~g~~LaSgs~Dg~---I~IWDlrt~k~v 569 (606)
||+.||+|++||+.+. .++..+ . |..+|++++|+|++++|++||.|++ |++||+++++.+
T Consensus 200 sgs~Dg~i~iwd~~~~----------~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~ 269 (393)
T d1sq9a_ 200 TGFNNGTVQISELSTL----------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI 269 (393)
T ss_dssp EECTTSEEEEEETTTT----------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred EEeCCCcEEEEeeccc----------ccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceee
Confidence 9999999999999874 233322 2 4567999999999999999999874 999999999887
Q ss_pred EEEc------------CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 570 QLFT------------DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 570 ~~l~------------~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+. .+|.+.|++++|+|+++ +|+|||.|++||.
T Consensus 270 ~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~v 315 (393)
T d1sq9a_ 270 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRF 315 (393)
T ss_dssp EEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEE
T ss_pred eeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEE
Confidence 7764 27999999999999998 5899999999985
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=1.5e-16 Score=155.98 Aligned_cols=147 Identities=12% Similarity=0.171 Sum_probs=115.4
Q ss_pred EEEcCCCCCEEEEEeCCC-cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccc
Q 035500 443 FEYNPSNPSLMAFGTLDG-EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVAD 521 (606)
Q Consensus 443 lafsP~dg~~LaSGs~DG-tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~ 521 (606)
.+++| +++.+++|+.|+ .|++|+........... ..|.+.+.+++|+| ++.+|++|+.||.|++||+....
T Consensus 124 ~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~----- 195 (287)
T d1pgua2 124 SAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLK-TPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSRE----- 195 (287)
T ss_dssp EEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECS-SCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE-----
T ss_pred eeeec-cCcceeeeccccceeeeeeccccceeeeee-eccCCceeEEEecc-Cccccccccccccccceeecccc-----
Confidence 45677 667888888775 79999987655544332 36888999999999 67899999999999999998732
Q ss_pred ccCCcceEEee-cCCCeEEEEEccC----------CCEEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEEeCCC
Q 035500 522 ARGNSSVATYY-DFEQLTSVHVNST----------DDQFLASGYSKNVALYDINTEK-PLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 522 l~~~~~i~t~~-~~~~V~sV~~sp~----------g~~LaSgs~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~fsP~g 589 (606)
.....+. |..+|.+++|+|. +.++++|+.|++|++||++++. .+..+. +|.+.|++++|+|++
T Consensus 196 ----~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~-~h~~~V~~v~~~~~~ 270 (287)
T d1pgua2 196 ----VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-AHKDGVNNLLWETPS 270 (287)
T ss_dssp ----EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-SSTTCEEEEEEEETT
T ss_pred ----cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeC-CCCCCeEEEEECCCC
Confidence 1111233 3466999999875 4689999999999999998754 455555 899999999999986
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
. ++|+|.|++||.
T Consensus 271 ~--l~s~g~D~~v~i 283 (287)
T d1pgua2 271 T--LVSSGADACIKR 283 (287)
T ss_dssp E--EEEEETTSCEEE
T ss_pred E--EEEEECCCeEEE
Confidence 3 788999999985
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.4e-18 Score=159.40 Aligned_cols=145 Identities=23% Similarity=0.322 Sum_probs=125.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.|||++||++ .++..+.+++..-..=++|||++|+|.+++.++.+++|++|+|. +|.|+.++++.|..||+|+.|.|
T Consensus 18 ~~lr~L~L~~--n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls-~N~i~~l~~~~~~~l~~L~~L~L 94 (162)
T d1a9na_ 18 VRDRELDLRG--YKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDLTELIL 94 (162)
T ss_dssp TSCEEEECTT--SCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECC-SSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCcEEECCC--CCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcc-cccccCCCcccccccccccccee
Confidence 4899999999 55566667655444457799999999999999999999999999 88999999999999999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhc
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLR 259 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (606)
.+|+|.++ ..+..|.++|+|++
T Consensus 95 ~~N~i~~~-~~l~~l~~l~~L~~--------------------------------------------------------- 116 (162)
T d1a9na_ 95 TNNSLVEL-GDLDPLASLKSLTY--------------------------------------------------------- 116 (162)
T ss_dssp CSCCCCCG-GGGGGGGGCTTCCE---------------------------------------------------------
T ss_pred cccccccc-ccccccccccccch---------------------------------------------------------
Confidence 99999875 55666777777764
Q ss_pred ccchhhhhccCCCCCCCcceecccccCCCCCCCCcccccccccchhhhhhhccCCCCcccchhhHHHHHhhCCCceeccC
Q 035500 260 TMNLMELSSCLSPNLNGHAEMLDEVNDSNEFPGGAHKQDLMDANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDN 339 (606)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~L~~~l~~~~npi~~~~~YReyvI~~Lp~LkvLD~ 339 (606)
+.+.+||++..++||.|+++.+|+|++||+
T Consensus 117 --------------------------------------------------L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 117 --------------------------------------------------LCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp --------------------------------------------------EECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred --------------------------------------------------hhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 447788999999999999999999999999
Q ss_pred CCCCcchHHHHHHHhh
Q 035500 340 LPIGRLDREIAKSVFA 355 (606)
Q Consensus 340 ~~i~~~eRe~A~~ifS 355 (606)
.+|+..||+.|...|.
T Consensus 147 ~~i~~~er~~A~~~~~ 162 (162)
T d1a9na_ 147 QKVKLKERQEAEKMFK 162 (162)
T ss_dssp EECCHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998763
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=3e-16 Score=158.89 Aligned_cols=150 Identities=13% Similarity=0.160 Sum_probs=124.5
Q ss_pred eeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL--DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~--DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.+++|+| ++.++++++. ++.+++|+..+++.+..+. +|...|.+++|+|.++..+++++.|+.+++||....+
T Consensus 118 v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~- 193 (325)
T d1pgua1 118 ISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVS--GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK- 193 (325)
T ss_dssp EEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECC--SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-
T ss_pred EEEEEECC-CCCccceeeccccceEEEEeecccccceeee--ecccccccccccccccceEEEeecccccccccccccc-
Confidence 78999999 8888887764 6789999999998887654 8999999999999776778999999999999987632
Q ss_pred CcccccCCcceEEee----cCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe---CCC
Q 035500 518 KVADARGNSSVATYY----DFEQLTSVHVNST-DDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS---HHS 589 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~----~~~~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs---P~g 589 (606)
...... +...|.+++|+|+ +.++++++.|+.|++||+++++.+..+. +|...+..+.|+ |++
T Consensus 194 ---------~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-~~~~~v~~~~~s~~~~dg 263 (325)
T d1pgua1 194 ---------FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIFALSWLDS 263 (325)
T ss_dssp ---------EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-BTTBCCCSCEEEEEESSS
T ss_pred ---------cceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc-ccccccccceeeeeccCC
Confidence 222222 2455999999997 5799999999999999999999999998 688777666555 566
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
. .|++||.|++||+
T Consensus 264 ~-~l~s~s~D~~i~i 277 (325)
T d1pgua1 264 Q-KFATVGADATIRV 277 (325)
T ss_dssp S-EEEEEETTSEEEE
T ss_pred C-EEEEEeCCCeEEE
Confidence 6 4889999999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4.1e-15 Score=142.29 Aligned_cols=151 Identities=13% Similarity=0.151 Sum_probs=107.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+|+ ++ ++++||||+.||+|+|||+++++.+..+. +|.+.|++++|+ +.+|+||+.||+|++|++.......
T Consensus 18 V~c~--~~-d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~--~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~~~~~ 89 (293)
T d1p22a2 18 VYCL--QY-DDQKIVSGLRDNTIKIWDKNTLECKRILT--GHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLN 89 (293)
T ss_dssp EEEE--EC-CSSEEEEEESSSCEEEEESSSCCEEEEEC--CCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEE
T ss_pred EEEE--EE-cCCEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCCEeeeecc---cceeecccccccccccccccccccc
Confidence 5554 45 78999999999999999999999988775 999999999985 3699999999999999997753211
Q ss_pred ccc------------------------------cC---CcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 520 ADA------------------------------RG---NSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 520 ~~l------------------------------~~---~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
... .. ......+. +...+..+.+. ...+++++.|+.|++||+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~ 167 (293)
T d1p22a2 90 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTST 167 (293)
T ss_dssp EECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTT
T ss_pred cccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCC
Confidence 000 00 00111111 22335554443 45677778888888888888
Q ss_pred CceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 566 EKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 566 ~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++.+..+. +|...|..+.+++ . .+++++.|++|+.
T Consensus 168 ~~~~~~~~-~~~~~v~~~~~~~--~-~l~~~~~dg~i~i 202 (293)
T d1p22a2 168 CEFVRTLN-GHKRGIACLQYRD--R-LVVSGSSDNTIRL 202 (293)
T ss_dssp CCEEEEEE-CCSSCEEEEEEET--T-EEEEEETTSCEEE
T ss_pred CcEEEEEc-ccccccccccCCC--C-eEEEecCCCEEEE
Confidence 88877777 6777777777653 2 4677778887764
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.1e-15 Score=146.53 Aligned_cols=149 Identities=10% Similarity=0.102 Sum_probs=114.7
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccc---
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVAD--- 521 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~--- 521 (606)
+++ +|++||||+.||+|+|||+++++.+..+. +|.+.|.+++|+| .+|++|+.|+++++|+..........
T Consensus 23 ~~~-~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~--~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~~~~~~~~~~~~~~ 96 (342)
T d2ovrb2 23 LQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLV--GHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGH 96 (342)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTTCCEEEECC--CCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEe--CCCCCEEEEEeCC---Cccccceecccccccccccccceeccccc
Confidence 445 67899999999999999999999887665 9999999999986 48999999999999998653110000
Q ss_pred ---------------------------c----------------------------------------cCCcceEEeecC
Q 035500 522 ---------------------------A----------------------------------------RGNSSVATYYDF 534 (606)
Q Consensus 522 ---------------------------l----------------------------------------~~~~~i~t~~~~ 534 (606)
. ....++..+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~ 176 (342)
T d2ovrb2 97 TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH 176 (342)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCC
T ss_pred ceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCc
Confidence 0 000111122222
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 535 EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 535 ~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
......+++++..+++|+.||+|++||++.++.+..+. +|...+.+++++++ ++++|+.|++|+.
T Consensus 177 -~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~---~l~s~s~d~~i~i 241 (342)
T d2ovrb2 177 -TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMELKDN---ILVSGNADSTVKI 241 (342)
T ss_dssp -SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEEETT---EEEEEETTSCEEE
T ss_pred -ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEec-ccccceeEEecCCC---EEEEEcCCCEEEE
Confidence 12234455678899999999999999999999999998 79999999988763 6899999999985
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.59 E-value=1.2e-14 Score=145.05 Aligned_cols=137 Identities=11% Similarity=0.083 Sum_probs=114.5
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC--eEEEEeCCCCCCCcc
Q 035500 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG--CVRLFDLNHIPPKVA 520 (606)
Q Consensus 443 lafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg--tIklWDl~~~~~~~~ 520 (606)
-.|||.||+++|+++ +|.|++||.+.+.... .+|...|.+++|+| ++..|++++.+. .|++||..++
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~----~~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~----- 76 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----VPEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTG----- 76 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----CSCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTC-----
T ss_pred ccccCCCCCEEEEEE-CCeEEEEECCCCcEEE----ccCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCC-----
Confidence 469998999999987 5799999999887664 27999999999999 567777666543 7999999873
Q ss_pred cccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 521 DARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 521 ~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
.......+...|.+++|+|+++++++++.++.+++|+..+++....+. .|...+.+++|+|+|.+++.+.
T Consensus 77 -----~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~la~~~ 146 (360)
T d1k32a3 77 -----KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSRFIAYGF 146 (360)
T ss_dssp -----CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEEE
T ss_pred -----cEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeee-cccccccchhhccceeeeeeec
Confidence 233344466779999999999999999999999999999999988888 6899999999999999765544
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.9e-14 Score=140.78 Aligned_cols=112 Identities=11% Similarity=0.236 Sum_probs=94.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC---------CCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK---------YPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~---------~~~~LaSgS~DgtIklW 510 (606)
+++++|+| ++.++++|+.||.|++||..++..... ...+|...|.+++|+|. ++.+++|||.|++|++|
T Consensus 165 v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw 242 (287)
T d1pgua2 165 PSYISISP-SETYIAAGDVMGKILLYDLQSREVKTS-RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 242 (287)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEC-CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEE
T ss_pred eeEEEecc-Cccccccccccccccceeecccccccc-cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEE
Confidence 78999999 899999999999999999998876543 34589999999999873 35689999999999999
Q ss_pred eCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 035500 511 DLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDI 563 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDl 563 (606)
|++.. ...+..+. |...|++++|+|++ .++|+|.|++|++||+
T Consensus 243 ~~~~~---------~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 243 SVKRP---------MKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ESSCT---------TCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred ECCCC---------CeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 99873 23455555 45669999999975 6899999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=7.1e-14 Score=133.51 Aligned_cols=141 Identities=12% Similarity=0.220 Sum_probs=114.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.++.+.+ ..+++++.||.|++||..+++.+..+. +|...|..+.+++ ..+++++.||+|++||++.
T Consensus 141 v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~----- 207 (293)
T d1p22a2 141 VNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLN--GHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC----- 207 (293)
T ss_dssp EEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEET---TEEEEEETTSCEEEEETTT-----
T ss_pred cccceecc---cccccccCCCceeeecCCCCcEEEEEc--ccccccccccCCC---CeEEEecCCCEEEEEeccc-----
Confidence 45555544 688999999999999999999887665 8888898888864 5899999999999999998
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCC---------ceeEEEcCCCCCCeEEEEEeCCC
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTE---------KPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~---------k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
...+..+..+.. +.. +.+++.++++|+.||.|++||++++ ..+..+. +|.+.|++++|++
T Consensus 208 -----~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~H~~~V~~v~~d~-- 277 (293)
T d1p22a2 208 -----GACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQFDE-- 277 (293)
T ss_dssp -----CCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEECS--
T ss_pred -----ceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEec-CCCCCEEEEEEcC--
Confidence 345666665444 554 4667889999999999999997642 3467777 7999999999964
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
. .++|||.|++||+
T Consensus 278 ~-~l~s~s~Dg~i~i 291 (293)
T d1p22a2 278 F-QIVSSSHDDTILI 291 (293)
T ss_dssp S-CEEECCSSSEEEE
T ss_pred C-EEEEEecCCEEEE
Confidence 3 4899999999985
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.53 E-value=6.3e-14 Score=139.59 Aligned_cols=146 Identities=11% Similarity=0.038 Sum_probs=118.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|++++|+| |+++|++++.+. .|++||.++++... ..+|.+.|.+++|+| ++.++++++.++.+++|+....
T Consensus 45 v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~~---~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~-- 117 (360)
T d1k32a3 45 IRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAEK---FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETG-- 117 (360)
T ss_dssp EEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEEE---CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTC--
T ss_pred EEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEEE---eeCCCceEEeeeecc-cccccceecccccccccccccc--
Confidence 88999999 999988876553 79999999887654 348999999999999 6789999999999999999883
Q ss_pred CcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEe----------CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 518 KVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASG----------YSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs----------~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
.....+.. ...+.+++|+|+|++++.++ .++.+++||+.+++...... |...+..++|+
T Consensus 118 --------~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~~~~s 187 (360)
T d1k32a3 118 --------KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT--ENSHDYAPAFD 187 (360)
T ss_dssp --------CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC--SSSBEEEEEEC
T ss_pred --------ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc--ccccccccccc
Confidence 34455554 45689999999999988654 34569999999887655444 67888999999
Q ss_pred CCCCeEEEEEeCCCeEE
Q 035500 587 HHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIR 603 (606)
|+|++ +++++.|+.++
T Consensus 188 pdg~~-l~~~s~~~~~~ 203 (360)
T d1k32a3 188 ADSKN-LYYLSYRSLDP 203 (360)
T ss_dssp TTSCE-EEEEESCCCCC
T ss_pred CCCCE-EEEEeCCCceE
Confidence 99996 67788877654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.39 E-value=1.6e-12 Score=126.20 Aligned_cols=118 Identities=8% Similarity=0.006 Sum_probs=92.5
Q ss_pred cCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCc
Q 035500 479 IGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKN 557 (606)
Q Consensus 479 ~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~ 557 (606)
.+|.+.|++|+|+| ++.+|+|||.||+|++||+...... ......+.|..+|.+++|+|++ .++++|+.|++
T Consensus 8 ~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~------~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 8 QAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp SCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CCCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcc------eEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence 48999999999999 5789999999999999999874221 1223344577889999999875 58999999999
Q ss_pred EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 558 VALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 558 I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++|++..+.........+........+.+++. .+++++.|++++.
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 126 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEV 126 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred eeeeecccccccccccccccccccccccccccc-cccccccccccce
Confidence 999999998887777743444444555555555 6889999998875
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.31 E-value=6.4e-12 Score=131.51 Aligned_cols=135 Identities=13% Similarity=0.109 Sum_probs=98.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEe
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATY 531 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~ 531 (606)
++++++.||+|+|||..+++.+..++ .| ..+.+++|+| +++++++++.|++|++||+.+.+. .....+
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~--~g-~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~--------~~~~~i 101 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVID--TG-YAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEP--------TKVAEI 101 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEE--CC-SSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSC--------EEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEe--CC-CCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCce--------eEEEEE
Confidence 55788899999999999999999886 44 3699999999 678999999999999999998531 122233
Q ss_pred ec----CCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 532 YD----FEQLTSVHVNSTDDQFL-ASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 532 ~~----~~~V~sV~~sp~g~~La-Sgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.. ...+.+++|+|+|++++ ++..++.+++||..+++....+. +|...+..+.+.+.+....+.++.|
T Consensus 102 ~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~d 173 (426)
T d1hzua2 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHE 173 (426)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE-CCEECSSSCCEESCCCEEEEEECSS
T ss_pred eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEee-ccCCCccceeecCCCceeEEEECCC
Confidence 32 23366778889999765 45588999999999999887776 4555444444444443333333333
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.28 E-value=8.5e-11 Score=113.61 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=112.0
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCCCCcccccCCcceEEe
Q 035500 453 MAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIPPKVADARGNSSVATY 531 (606)
Q Consensus 453 LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~ 531 (606)
.++++.|++|.|||.++++.+..++. ...+.+++|+| +++++ ++++.++.|++||+.+ ...+.++
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~---g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t----------~~~~~~~ 70 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPV---GSNPMGAVISP-DGTKVYVANAHSNDVSIIDTAT----------NNVIATV 70 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTT----------TEEEEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEEC---CCCceEEEEeC-CCCEEEEEECCCCEEEEEECCC----------Cceeeee
Confidence 35678899999999999999887764 24588999999 45655 6788899999999988 4567777
Q ss_pred ecCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 532 YDFEQLTSVHVNSTDDQF-LASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 532 ~~~~~V~sV~~sp~g~~L-aSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+..+..++|++++..+ +++..++.+.+||..+++....+. +.....++.|+|++..++++++.|+.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~ 142 (301)
T d1l0qa2 71 PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSV 142 (301)
T ss_dssp ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eccccccccccccccccccccccccceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccccceee
Confidence 777788999999999754 555677899999999999888887 45678899999999998888888887653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.27 E-value=2.8e-11 Score=127.95 Aligned_cols=163 Identities=7% Similarity=-0.053 Sum_probs=113.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE--EEEe-ccCCCCCEEEEEEeeCCCCE-EEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA--CYIP-SIGGTNSVLGLCWLKKYPSK-LVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v--~~~~-~~gH~~~V~~L~fsp~~~~~-LaSgS~DgtIklWDl~~~ 515 (606)
+..++||| ||+++++++.||+|++||+.+++.. ..++ ..+|.+.+.+..|+| ++.+ +++++.+++|++||..+.
T Consensus 64 ~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~ 141 (432)
T d1qksa2 64 VHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETL 141 (432)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTC
T ss_pred eeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC-CCCEEEEEcCCCCeEEEEeCccc
Confidence 67889999 9999999999999999999886643 2222 224555566666777 4565 588999999999999874
Q ss_pred CCCccccc--CCcceEEeecCCCeEEEEEccCCCE-EEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADAR--GNSSVATYYDFEQLTSVHVNSTDDQ-FLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~--~~~~i~t~~~~~~V~sV~~sp~g~~-LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
........ .......+........+.++|++.. +++.+.++.|.+||..+.+........+...+..++|+|+|.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~ 221 (432)
T d1qksa2 142 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 221 (432)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEE
Confidence 32100000 0000112223344778899999875 45667789999999998876544443366788999999999987
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
++++..+..+..
T Consensus 222 ~va~~~~~~v~v 233 (432)
T d1qksa2 222 ITAANARNKLVV 233 (432)
T ss_dssp EEEEGGGTEEEE
T ss_pred EEeccccceEEE
Confidence 777776666553
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.26 E-value=2.8e-11 Score=118.52 Aligned_cols=137 Identities=13% Similarity=0.042 Sum_probs=108.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
.++++++.|++|+|||.++++.+..+....+...+.+++|+| +++++ ++++.|+.|.+||+.++ +.+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~----------~~~~ 70 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTG----------ETLG 70 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTC----------CEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECC-CCCEEEEEECCCCeEEEEECCCC----------cEEE
Confidence 489999999999999999999999887656666788999999 55665 67788999999999984 3344
Q ss_pred EeecC------CCeEEEEEccCCCEEEEEe------------CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 530 TYYDF------EQLTSVHVNSTDDQFLASG------------YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 530 t~~~~------~~V~sV~~sp~g~~LaSgs------------~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
....+ ..+..++|+|+++.+++++ .+..+.+||..+++....+. +...+..++|+|++.+
T Consensus 71 ~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~ 148 (337)
T d1pbyb_ 71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSK 148 (337)
T ss_dssp EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSC
T ss_pred EEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc--ccCCceEEEEcCCCCE
Confidence 44322 2245789999999888776 35789999999999988887 4567889999999997
Q ss_pred EEEEEeCCCe
Q 035500 592 CLLLLHLTTM 601 (606)
Q Consensus 592 LLaTgS~Dgt 601 (606)
++ +++.|..
T Consensus 149 l~-~~~~~~~ 157 (337)
T d1pbyb_ 149 LY-GLGRDLH 157 (337)
T ss_dssp EE-EESSSEE
T ss_pred EE-EEcCCcc
Confidence 54 5555543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.24 E-value=3e-10 Score=109.62 Aligned_cols=148 Identities=12% Similarity=0.132 Sum_probs=119.4
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+..++|+| +++++ ++++.+++|++||..+++.+..+. .|. .+.+++|++++...++++..++.+.+|+...
T Consensus 34 p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 105 (301)
T d1l0qa2 34 PMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVP--AGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS---- 105 (301)
T ss_dssp EEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE--CSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT----
T ss_pred ceEEEEeC-CCCEEEEEECCCCEEEEEECCCCceeeeee--ccc-cccccccccccccccccccccceeeeccccc----
Confidence 67889999 88877 567789999999999999888765 443 5789999986555667778889999999987
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQF-LASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~L-aSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
......+.++.....+.|+|++..+ ++++.++.+.+|+..+++.+..+. +...+..++++|++..+++++.
T Consensus 106 ------~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 177 (301)
T d1l0qa2 106 ------NTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--VGRSPKGIAVTPDGTKVYVANF 177 (301)
T ss_dssp ------TEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEET
T ss_pred ------ceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc--cCCCceEEEeeccccceeeecc
Confidence 4456677777788999999999865 455678899999999999988887 4567889999999998776666
Q ss_pred CCCeEE
Q 035500 598 LTTMSR 603 (606)
Q Consensus 598 ~DgtIR 603 (606)
.++.+.
T Consensus 178 ~~~~~~ 183 (301)
T d1l0qa2 178 DSMSIS 183 (301)
T ss_dssp TTTEEE
T ss_pred cccccc
Confidence 555443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.23 E-value=2.5e-10 Score=120.50 Aligned_cols=140 Identities=16% Similarity=0.068 Sum_probs=109.9
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEe
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATY 531 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~ 531 (606)
++++.+.||+|.|||..+++.+..++ .| ..+.+++|+| +++++++++.|++|++||+.+.+. ..+...
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~--~g-~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~--------~~~~~i 101 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLD--TG-YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEP--------TTVAEI 101 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEE--CS-SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSC--------CEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEe--CC-CCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCc--------eEEEEE
Confidence 45899999999999999999999887 34 3699999999 779999999999999999987432 122222
Q ss_pred e----cCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeEEEcC----------CCCCCeEEEEEeCCCCeEEEEE
Q 035500 532 Y----DFEQLTSVHVNSTDDQF-LASGYSKNVALYDINTEKPLQLFTD----------MHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 532 ~----~~~~V~sV~~sp~g~~L-aSgs~Dg~I~IWDlrt~k~v~~l~~----------gH~~~I~sV~fsP~g~~LLaTg 596 (606)
. +...+.+..|+|+|+++ ++++.+++|++||..+++++..+.. .+......+.++|+++.++++.
T Consensus 102 ~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~ 181 (432)
T d1qksa2 102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181 (432)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE
Confidence 2 22336666778899865 7788899999999999998877651 1345567888999999888888
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
+.++.|.
T Consensus 182 ~~~~~i~ 188 (432)
T d1qksa2 182 KETGKIL 188 (432)
T ss_dssp TTTTEEE
T ss_pred ccCCeEE
Confidence 8877664
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.20 E-value=6.4e-13 Score=127.04 Aligned_cols=140 Identities=22% Similarity=0.292 Sum_probs=86.6
Q ss_pred ceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 126 SCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+.+.|+|++|+|.++..++.+.+|++|+|+ .|.|++++ +.+..+|+|+.|.+.+|+|..+ .++.++++|+.|.+
T Consensus 49 ~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls-~N~i~~i~-~~~~~~~~L~~L~l~~N~i~~l----~~~~~l~~L~~L~L 122 (198)
T d1m9la_ 49 ACKHLALSTNNIEKISSLSGMENLRILSLG-RNLIKKIE-NLDAVADTLEELWISYNQIASL----SGIEKLVNLRVLYM 122 (198)
T ss_dssp TCCEEECSEEEESCCCCHHHHTTCCEEECC-EEEECSCS-SHHHHHHHCCEEECSEEECCCH----HHHHHHHHSSEEEE
T ss_pred ccceeECcccCCCCcccccCCccccChhhc-cccccccc-cccccccccccccccccccccc----cccccccccccccc
Confidence 355677777777776666666777777776 55666664 4455566677777777766654 55666666666654
Q ss_pred ceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhcccchhhhhccCCCCCCCcceeccccc
Q 035500 206 QMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLRTMNLMELSSCLSPNLNGHAEMLDEVN 285 (606)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 285 (606)
..+. +. ++. .++.+.-+..|+
T Consensus 123 ~~N~---------------------------------------i~--~~~-~~~~l~~l~~L~----------------- 143 (198)
T d1m9la_ 123 SNNK---------------------------------------IT--NWG-EIDKLAALDKLE----------------- 143 (198)
T ss_dssp SEEE---------------------------------------CC--CHH-HHHHHTTTTTCS-----------------
T ss_pred ccch---------------------------------------hc--ccc-ccccccCCCccc-----------------
Confidence 4322 00 000 000111111122
Q ss_pred CCCCCCCCcccccccccchhhhhhhccCCCCcc-------cchhhHHHHHhhCCCceeccCCCCCcchHHHHHHH
Q 035500 286 DSNEFPGGAHKQDLMDANVKLKKYISHHPSPIC-------FEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSV 353 (606)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~v~L~~~l~~~~npi~-------~~~~YReyvI~~Lp~LkvLD~~~i~~~eRe~A~~i 353 (606)
++.+.+||++ ....||.+++..||+|+.||+.+|...||..|...
T Consensus 144 -----------------------~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I~~~er~~A~~~ 195 (198)
T d1m9la_ 144 -----------------------DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVA 195 (198)
T ss_dssp -----------------------EEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGGTTTTTTHHHHH
T ss_pred -----------------------eeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccCCHHHHHHHHHh
Confidence 4444455544 23679999999999999999999999999998853
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.16 E-value=6.9e-10 Score=108.39 Aligned_cols=158 Identities=11% Similarity=0.051 Sum_probs=107.9
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCceEEEEeccC---CCCCEEEEEEeeCCCCEEEEEE------------C
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHENGNVACYIPSIG---GTNSVLGLCWLKKYPSKLVAGS------------D 503 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~g---H~~~V~~L~fsp~~~~~LaSgS------------~ 503 (606)
+..++|+| ||+++ ++++.+|.|.+||+.+++.+..+.... +...+.+++|+| ++..+++++ .
T Consensus 36 ~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T d1pbyb_ 36 PMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEEC
T ss_pred ccEEEECC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeecccc
Confidence 66789999 98887 567789999999999999887665321 123345789998 556776665 4
Q ss_pred CCeEEEEeCCCCCCC--------ccc-------------------c------------------------cCC-------
Q 035500 504 SGCVRLFDLNHIPPK--------VAD-------------------A------------------------RGN------- 525 (606)
Q Consensus 504 DgtIklWDl~~~~~~--------~~~-------------------l------------------------~~~------- 525 (606)
++.+.+||....... ... + .+.
T Consensus 114 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (337)
T d1pbyb_ 114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE 193 (337)
T ss_dssp CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCT
T ss_pred ccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeecccc
Confidence 667888886653100 000 0 000
Q ss_pred ------------------------------------c-ceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 035500 526 ------------------------------------S-SVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK 567 (606)
Q Consensus 526 ------------------------------------~-~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k 567 (606)
. ....+. +...+..+.++|++.+++++ ++.+++||+.+++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~ 271 (337)
T d1pbyb_ 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA 271 (337)
T ss_dssp TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE
T ss_pred ccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCc
Confidence 0 000011 12235566677777777655 4789999999999
Q ss_pred eeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 568 PLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 568 ~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+..+. +...+.+++|+|+|.+ +++|+.|+.|+.
T Consensus 272 ~~~~~~--~~~~~~~~~~s~dG~~-l~v~~~~~~i~v 305 (337)
T d1pbyb_ 272 SIKRVP--LPHSYYSVNVSTDGST-VWLGGALGDLAA 305 (337)
T ss_dssp EEEEEE--CSSCCCEEEECTTSCE-EEEESBSSEEEE
T ss_pred EEEEEc--CCCCEEEEEECCCCCE-EEEEeCCCcEEE
Confidence 998887 5678899999999996 567888998875
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=3.9e-10 Score=110.69 Aligned_cols=145 Identities=10% Similarity=-0.006 Sum_probs=104.5
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCCCCcccccCCcceEE
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIPPKVADARGNSSVAT 530 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t 530 (606)
.+++++.|++|+||++.+......++...|.+.+.+++|+| ++++| ++++.|+.|++|++...... ......
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~------~~~~~~ 78 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGA------LTFAAE 78 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCC------EEEEEE
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCc------EEEeee
Confidence 45788899999999987654444445557888999999999 56766 55556899999999864221 011222
Q ss_pred eecCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeEEEc-CCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 531 YYDFEQLTSVHVNSTDDQFLASGY-SKNVALYDINTEKPLQLFT-DMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 531 ~~~~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt~k~v~~l~-~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
......+..++|+|+|+++++++. ++.+.+|+........... ..|...+.++.++|++.+++++...+..|+
T Consensus 79 ~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~ 153 (333)
T d1ri6a_ 79 SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC 153 (333)
T ss_dssp EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceee
Confidence 334455788999999998888875 6789999988765533322 146778889999999998776666665554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=5e-11 Score=105.25 Aligned_cols=74 Identities=22% Similarity=0.345 Sum_probs=63.6
Q ss_pred eEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 128 HVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
++|||++|+|..+..++.+.+|.+|+|+ +|.|+.+++ .|..||+|+.|.+.+|+|..+ .++.++|+|++|.+..
T Consensus 1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls-~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l----~~~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLS-HNRLRALPP-ALAALRCLEVLQASDNALENV----DGVANLPRLQELLLCN 74 (124)
T ss_dssp SEEECTTSCCSSCCCGGGGTTCCEEECC-SSCCCCCCG-GGGGCTTCCEEECCSSCCCCC----GGGTTCSSCCEEECCS
T ss_pred CEEEcCCCCCCCCcccccCCCCCEEECC-CCccCcchh-hhhhhhccccccccccccccc----CccccccccCeEECCC
Confidence 4799999999999989999999999999 889999975 488899999999999999877 6788888888887443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.03 E-value=2e-09 Score=112.16 Aligned_cols=162 Identities=7% Similarity=-0.027 Sum_probs=108.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe---ccCCCCCEEEEEEeeCCCCE-EEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP---SIGGTNSVLGLCWLKKYPSK-LVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~---~~gH~~~V~~L~fsp~~~~~-LaSgS~DgtIklWDl~~~ 515 (606)
+..++||| ||+++++++.||+|++||+.+++...... ..+|.+.+.+++|+| ++.+ +++++.++++++||....
T Consensus 64 ~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~ 141 (426)
T d1hzua2 64 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDGETL 141 (426)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEETTTC
T ss_pred eeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC-CCCEEEEeecCCCeEEEEcCCcc
Confidence 67899999 99999999999999999999887544332 235556667777788 4555 466679999999999884
Q ss_pred CCCcccccC--CcceEEeecCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARG--NSSVATYYDFEQLTSVHVNSTDDQFLASG-YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~--~~~i~t~~~~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
......... ......+........+..++++..++... ..+.+.+++.........-..++...+..++|+|++.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 221 (426)
T d1hzua2 142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYF 221 (426)
T ss_dssp CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEE
T ss_pred ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEE
Confidence 311000000 00001122334456677788877555544 446777777776654333222478889999999999988
Q ss_pred EEEEeCCCeEE
Q 035500 593 LLLLHLTTMSR 603 (606)
Q Consensus 593 LaTgS~DgtIR 603 (606)
+++...+..+.
T Consensus 222 ~~a~~~~~~~~ 232 (426)
T d1hzua2 222 MTAANNSNKVA 232 (426)
T ss_dssp EEEETTCSEEE
T ss_pred Eeeeeccccee
Confidence 87776666554
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.00 E-value=5.5e-10 Score=109.51 Aligned_cols=138 Identities=7% Similarity=0.003 Sum_probs=100.8
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCE-EEEEECCCeEEEEeCCCCCCCcccc
Q 035500 444 EYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSK-LVAGSDSGCVRLFDLNHIPPKVADA 522 (606)
Q Consensus 444 afsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~-LaSgS~DgtIklWDl~~~~~~~~~l 522 (606)
+|++ +++++++++.|++|.|||+.+++.+.+++. +|...+.+++|+|+ +.+ +++++.++.|.+||+.+.
T Consensus 3 a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~-~~~~~p~~l~~spD-G~~l~v~~~~~~~v~~~d~~t~------- 72 (346)
T d1jmxb_ 3 ALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTC------- 72 (346)
T ss_dssp CCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTT-------
T ss_pred cCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEc-CCCCCcceEEECCC-CCEEEEEECCCCcEEEEeCccC-------
Confidence 5788 899999999999999999999999887764 55667889999994 455 577778999999999884
Q ss_pred cCCcceEEeecC-------CCeEEEEEccCCCEEEEEe------------CCCcEEEEECCCCceeEEEcC-CCCCCeEE
Q 035500 523 RGNSSVATYYDF-------EQLTSVHVNSTDDQFLASG------------YSKNVALYDINTEKPLQLFTD-MHREPINV 582 (606)
Q Consensus 523 ~~~~~i~t~~~~-------~~V~sV~~sp~g~~LaSgs------------~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~s 582 (606)
..+..+... ..+..++|+|+|+++++++ .++.+.+||..+++....+.. .....+..
T Consensus 73 ---~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (346)
T d1jmxb_ 73 ---KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYL 149 (346)
T ss_dssp ---EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCC
T ss_pred ---eeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEE
Confidence 333333321 1256789999999887765 467899999998765433321 12345666
Q ss_pred EEEeCCCCeEEEE
Q 035500 583 AKFSHHSPLCLLL 595 (606)
Q Consensus 583 V~fsP~g~~LLaT 595 (606)
+.+++++. ++++
T Consensus 150 ~~~~~~~~-~~~~ 161 (346)
T d1jmxb_ 150 MRAADDGS-LYVA 161 (346)
T ss_dssp EEECTTSC-EEEE
T ss_pred EEecCCCE-EEEe
Confidence 77777665 4444
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=7.9e-08 Score=93.75 Aligned_cols=154 Identities=12% Similarity=0.129 Sum_probs=105.4
Q ss_pred eeEEEEcCCCCCEEEEE-eCCCcEEEEECCCCceEEEE-eccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFG-TLDGEVIVINHENGNVACYI-PSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSG-s~DGtVrIWDi~tg~~v~~~-~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~~ 516 (606)
+..++|+| ||++|+++ ..|+.|++|++..+...... ....+...+.+++|+| +++++++++ .+++|.+|+.....
T Consensus 39 v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~ 116 (333)
T d1ri6a_ 39 VQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGL 116 (333)
T ss_dssp CCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTE
T ss_pred EeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeecccccc
Confidence 78899999 99988555 45899999998765433222 1123445677899999 567777776 57799999887632
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeE-----EEcCCCCCCeEEEEEeCCCC
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY-SKNVALYDINTEKPLQ-----LFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt~k~v~-----~l~~gH~~~I~sV~fsP~g~ 590 (606)
. ........+...+.++.++|+++.+++++. +..+.+|+........ .....+......++|++++.
T Consensus 117 ~-------~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~ 189 (333)
T d1ri6a_ 117 P-------VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ 189 (333)
T ss_dssp E-------EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred c-------eecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce
Confidence 1 111222234556889999999998777764 4679999988754322 12223456678899999999
Q ss_pred eEEEEEeCCCeE
Q 035500 591 LCLLLLHLTTMS 602 (606)
Q Consensus 591 ~LLaTgS~DgtI 602 (606)
.++.+....+..
T Consensus 190 ~~~~~~~~~~~~ 201 (333)
T d1ri6a_ 190 YAYCVNELNSSV 201 (333)
T ss_dssp EEEEEETTTTEE
T ss_pred eEEeeccccCce
Confidence 877666555543
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.69 E-value=1.5e-08 Score=95.54 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=62.7
Q ss_pred ceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 126 SCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
..+.|+|+++.|..+..+..|++|.+|+|+ +|.|+.+.. |..||+|+.|.+.+|++..+ .++..+++|++|.+
T Consensus 41 ~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls-~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~----~~l~~l~~L~~L~l 113 (199)
T d2omxa2 41 QVTTLQADRLGIKSIDGVEYLNNLTQINFS-NNQLTDITP--LKNLTKLVDILMNNNQIADI----TPLANLTNLTGLTL 113 (199)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGTTCTTCSEEEC
T ss_pred CCCEEECCCCCCCCccccccCCCcCcCccc-cccccCccc--ccCCcccccccccccccccc----cccccccccccccc
Confidence 456789999999988888889999999998 778988865 88899999999988877665 67888888888875
Q ss_pred cee
Q 035500 206 QMC 208 (606)
Q Consensus 206 ~~~ 208 (606)
..|
T Consensus 114 ~~~ 116 (199)
T d2omxa2 114 FNN 116 (199)
T ss_dssp CSS
T ss_pred ccc
Confidence 543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.65 E-value=7.2e-08 Score=100.90 Aligned_cols=142 Identities=8% Similarity=0.035 Sum_probs=102.0
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe---ccCCCCCEEEEEEeeCCCCEEEEEEC---------CCeEEE
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP---SIGGTNSVLGLCWLKKYPSKLVAGSD---------SGCVRL 509 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~---~~gH~~~V~~L~fsp~~~~~LaSgS~---------DgtIkl 509 (606)
++.|.+ +++++.. .||.+.+||+.+++....+. +..|...|.++.|+| ++.+|+.++. ++.+.+
T Consensus 21 ~~~W~~-d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 21 SLRWIS-DHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCEECS-SSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred CCEeCC-CCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEE
Confidence 356998 8877763 57889999999998765443 345667899999999 6788887753 568889
Q ss_pred EeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC-------------
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMH------------- 576 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH------------- 576 (606)
||+.++. ....-.+...+..+.|+|+|+.+|... ++.+.+|+..+++..+....+.
T Consensus 97 ~d~~~~~----------~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~ 165 (470)
T d2bgra1 97 YDLNKRQ----------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (470)
T ss_dssp EETTTTE----------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred EECCCCc----------ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceee
Confidence 9999842 111122355689999999999998864 5789999999887765443221
Q ss_pred ----CCCeEEEEEeCCCCeEEEEEeCC
Q 035500 577 ----REPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 577 ----~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.+....+.|+|+|+++ |....|
T Consensus 166 ~~~~~~~~~~~~wSPDGk~i-a~~~~d 191 (470)
T d2bgra1 166 EEEVFSAYSALWWSPNGTFL-AYAQFN 191 (470)
T ss_dssp HHHTSSSSBCEEECTTSSEE-EEEEEE
T ss_pred eeeecCCccccEECCCCCcc-ceeEec
Confidence 2334568899999974 444444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.64 E-value=3e-08 Score=98.16 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=92.5
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCC----------CCEEEEEEeeCCCCEEEEEECC-------
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGT----------NSVLGLCWLKKYPSKLVAGSDS------- 504 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~----------~~V~~L~fsp~~~~~LaSgS~D------- 504 (606)
...+.+ ++..++.++.+|++++|+...+.....-...+|. .....+++++ ++..++..+.+
T Consensus 199 ~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~~~~~ 276 (355)
T d2bbkh_ 199 HPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHK 276 (355)
T ss_dssp CCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTT
T ss_pred eccccC-CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccCCceeec
Confidence 445777 7778899999999999999877653221111221 2233467777 44555444333
Q ss_pred ---CeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCC--EEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 035500 505 ---GCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDD--QFLASGYSKNVALYDINTEKPLQLFTDMHREP 579 (606)
Q Consensus 505 ---gtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~--~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~ 579 (606)
..|.+||..+. ..+..+.....+.+++|+|+|+ ++++++.|++|++||+++++.++.+. ++...
T Consensus 277 ~~~~~v~v~d~~t~----------~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~-~~G~~ 345 (355)
T d2bbkh_ 277 TASRFVVVLDAKTG----------ERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN-QLGHG 345 (355)
T ss_dssp SCEEEEEEEETTTC----------CEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC-CCCSS
T ss_pred CCCCeEEEEeCCCC----------cEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe-CcCCC
Confidence 37999999883 4556666666689999999997 46677889999999999999999997 45444
Q ss_pred eEEEEEeCC
Q 035500 580 INVAKFSHH 588 (606)
Q Consensus 580 I~sV~fsP~ 588 (606)
-..+.+.++
T Consensus 346 p~~i~~~d~ 354 (355)
T d2bbkh_ 346 PQVITTADM 354 (355)
T ss_dssp CCEEECCCC
T ss_pred ccEEEeCCC
Confidence 445554443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.63 E-value=2.7e-08 Score=94.60 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=64.3
Q ss_pred ceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 126 SCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+.+.|+++++.|..+..+..|++|.+|+|+ .|.|+.++. ++.||+|+.|.+.+|+|..+ .++..+++|++|.+
T Consensus 47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~-~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l----~~l~~l~~L~~L~l 119 (210)
T d1h6ta2 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLN-GNKLTDIKP--LANLKNLGWLFLDENKVKDL----SSLKDLKKLKSLSL 119 (210)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSSCCCCG----GGGTTCTTCCEEEC
T ss_pred CccEEECcCCCCCCchhHhhCCCCCEEeCC-CccccCccc--cccCcccccccccccccccc----cccccccccccccc
Confidence 457789999999988888889999999999 778998864 67899999999999988776 67888888888886
Q ss_pred ceec
Q 035500 206 QMCL 209 (606)
Q Consensus 206 ~~~~ 209 (606)
+.|.
T Consensus 120 ~~~~ 123 (210)
T d1h6ta2 120 EHNG 123 (210)
T ss_dssp TTSC
T ss_pred cccc
Confidence 6653
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.61 E-value=1.8e-08 Score=88.39 Aligned_cols=98 Identities=23% Similarity=0.311 Sum_probs=79.6
Q ss_pred eEEEccCccccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEccc
Q 035500 103 RVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCE 181 (606)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~ 181 (606)
|++||+++-+- .+..+.+- ..=+.|||++|+|+.+. .++.+.+|++|+|+ .|.|++++. |..||+|+.|.+.+
T Consensus 1 R~L~Ls~n~l~--~l~~l~~l-~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~-~N~i~~l~~--~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 1 RVLHLAHKDLT--VLCHLEQL-LLVTHLDLSHNRLRALPPALAALRCLEVLQAS-DNALENVDG--VANLPRLQELLLCN 74 (124)
T ss_dssp SEEECTTSCCS--SCCCGGGG-TTCCEEECCSSCCCCCCGGGGGCTTCCEEECC-SSCCCCCGG--GTTCSSCCEEECCS
T ss_pred CEEEcCCCCCC--CCcccccC-CCCCEEECCCCccCcchhhhhhhhcccccccc-cccccccCc--cccccccCeEECCC
Confidence 78899986553 33333221 24578999999999994 68899999999999 899999975 89999999999999
Q ss_pred ccccchhhhhHHhhcCCchhhhhhce
Q 035500 182 TRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 182 ~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
|+|..+ ..+.++.++|+|+.|.+.+
T Consensus 75 N~i~~~-~~~~~l~~~~~L~~L~l~~ 99 (124)
T d1dcea3 75 NRLQQS-AAIQPLVSCPRLVLLNLQG 99 (124)
T ss_dssp SCCCSS-STTGGGGGCTTCCEEECTT
T ss_pred CccCCC-CCchhhcCCCCCCEEECCC
Confidence 999965 5567889999999998765
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=3.8e-09 Score=97.01 Aligned_cols=83 Identities=24% Similarity=0.305 Sum_probs=57.4
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccc-cccccccEEecccCCCccccc--ccccccCcccc
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMV-GRFMHLNTLSLDFCSSLASLH--EDCFSCMPYLM 175 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~tl~l~~~~~~~~~~--~~~~~~~p~l~ 175 (606)
|...+..||.+ +..+ .+|...+.-+ .+++..+.+..+..+ ..+++|++|+|. .|.|+.+. ..+|.++|+|+
T Consensus 21 ~~~~~~Ldls~--l~~~--~~l~~~~~~~-~l~~~~~~~~~l~~~~~~~~~L~~L~Ls-~N~i~~l~~~~~~~~~l~~L~ 94 (162)
T d1koha1 21 DGSQQALDLKG--LRSD--PDLVAQNIDV-VLNRRSSMAATLRIIEENIPELLSLNLS-NNRLYRLDDMSSIVQKAPNLK 94 (162)
T ss_dssp CSSSCCBCCCC--CSSC--TTTTTTTCCC-CTTSHHHHHHHHHHHHHHCTTCCCCCCC-SSCCCCCSGGGTHHHHSTTCC
T ss_pred chhhCeeeccc--CCCC--chhhhccchh-hcchhhhHhhhhHHHHHhCCCCCEeeCC-CccccCCchhHHHHhhCCccc
Confidence 44566777776 3322 2344444333 245555555555544 368899999999 88999885 46788999999
Q ss_pred EEEcccccccch
Q 035500 176 CLSMCETRIVNL 187 (606)
Q Consensus 176 ~l~~~~~~~~~l 187 (606)
.|.+.+|+|..+
T Consensus 95 ~L~Ls~N~i~~l 106 (162)
T d1koha1 95 ILNLSGNELKSE 106 (162)
T ss_dssp CCCCTTSCCCCG
T ss_pred ccccccCccccc
Confidence 999999999876
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.57 E-value=2.7e-06 Score=84.52 Aligned_cols=161 Identities=11% Similarity=0.045 Sum_probs=104.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc----CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI----GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~----gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+.++.++|.....+++++.||++.+|+...+......... ++......+.+. ....++..+.++.+.+|+....
T Consensus 167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~ 244 (373)
T d2madh_ 167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN--KSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC--CCceEEEecCCceEEEEEcCCC
Confidence 5577899944456678999999999999987776654321 112222334444 3456777888999999998874
Q ss_pred CCCcc-cccC--CcceEEeecCCCeEEEEEccCCC----------EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE
Q 035500 516 PPKVA-DARG--NSSVATYYDFEQLTSVHVNSTDD----------QFLASGYSKNVALYDINTEKPLQLFTDMHREPINV 582 (606)
Q Consensus 516 ~~~~~-~l~~--~~~i~t~~~~~~V~sV~~sp~g~----------~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s 582 (606)
..... .+.. ...............+++++++. .+++...++.+.+||..+++.+..+. +...+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~--~~~~~~~ 322 (373)
T d2madh_ 245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVDA 322 (373)
T ss_pred eEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec--CCCCeeE
Confidence 32100 0000 00000000112234455555554 34455667889999999999998887 5678999
Q ss_pred EEEeCCCCe-EEEEEeCCCeEEE
Q 035500 583 AKFSHHSPL-CLLLLHLTTMSRC 604 (606)
Q Consensus 583 V~fsP~g~~-LLaTgS~DgtIRc 604 (606)
++|+|+|++ ++++++.|++|+.
T Consensus 323 ~a~spDG~~~l~vt~~~d~~v~v 345 (373)
T d2madh_ 323 ISVAQDGGPDLYALSAGTEVLHI 345 (373)
T ss_pred EEECCCCCEEEEEEeCCCCeEEE
Confidence 999999987 4678999999875
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.53 E-value=2.8e-07 Score=89.69 Aligned_cols=112 Identities=12% Similarity=0.060 Sum_probs=87.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
....++++..++.+.+||..++...... ..+|...+..+.+++.+ ..+++++ ++.|.+||..+ .+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v~v~d~~~----------~~~~ 285 (346)
T d1jmxb_ 219 DKQDPATADLLYGYLSVDLKTGKTHTQE-FADLTELYFTGLRSPKD-PNQIYGV-LNRLAKYDLKQ----------RKLI 285 (346)
T ss_dssp -----CCCEEEEEEEEEETTTCCEEEEE-EEECSSCEEEEEECSSC-TTEEEEE-ESEEEEEETTT----------TEEE
T ss_pred CceeEeeccCCceEEEEECCCCceEEEE-eecccceeEEEEEeCCC-CEEEEec-CCeEEEEECCC----------CcEE
Confidence 5556777788889999999988766543 34778889999999854 4555555 45799999988 4456
Q ss_pred EEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 529 ATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 529 ~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
..+.....+.+++|+|+|+++++++.|+.|++||.++++.+..++
T Consensus 286 ~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 286 KAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp EEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence 667766779999999999999999999999999999999988777
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=9.8e-08 Score=93.61 Aligned_cols=75 Identities=21% Similarity=0.277 Sum_probs=56.4
Q ss_pred eeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 127 CHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
=++|||++|+|..+. .+..+++|++|+|+ .|.|+.++. |..||+|+.|.+.+|++...+. .+..+++|++|.
T Consensus 33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~-~N~l~~l~~--~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~ 106 (266)
T d1p9ag_ 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLD-RAELTKLQV--DGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLD 106 (266)
T ss_dssp CCEEECTTSCCSEEEGGGGTTCTTCCEEECT-TSCCCEEEC--CSCCTTCCEEECCSSCCSSCCC---CTTTCTTCCEEE
T ss_pred CCEEECcCCcCCCcCHHHhhccccccccccc-ccccccccc--cccccccccccccccccccccc---cccccccccccc
Confidence 367888888888874 46778888888888 678888865 6778888888888888776543 455677777776
Q ss_pred hce
Q 035500 205 FQM 207 (606)
Q Consensus 205 ~~~ 207 (606)
+..
T Consensus 107 l~~ 109 (266)
T d1p9ag_ 107 VSF 109 (266)
T ss_dssp CCS
T ss_pred ccc
Confidence 544
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.50 E-value=2.4e-06 Score=84.96 Aligned_cols=133 Identities=10% Similarity=0.024 Sum_probs=93.1
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCC----------EEEEEEeeC---------CCCEEEEEE
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNS----------VLGLCWLKK---------YPSKLVAGS 502 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~----------V~~L~fsp~---------~~~~LaSgS 502 (606)
...+++ ++ .++..+.++++.+|+..++..........+... ...++++++ .+..+++..
T Consensus 218 ~~~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 295 (373)
T d2madh_ 218 PAQANK-SG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHA 295 (373)
T ss_pred eEEECC-Cc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeec
Confidence 344555 44 555677899999999887665433322222222 223344432 223445667
Q ss_pred CCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCC--EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCe
Q 035500 503 DSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDD--QFLASGYSKNVALYDINTEKPLQLFTDMHREPI 580 (606)
Q Consensus 503 ~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~--~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I 580 (606)
.++.+.+||..+ ...+..+.+...+.+++|+|+|+ ++++++.|++|++||+.+++.+..+. +|....
T Consensus 296 ~~~~v~~~d~~t----------~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~-~~g~~P 364 (373)
T d2madh_ 296 AAKEVTSVTGLV----------GQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV-ELGSGP 364 (373)
T ss_pred CCCeEEEEECCC----------CcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC-CCCCCC
Confidence 778899999888 34566777777899999999997 45788999999999999999999998 576777
Q ss_pred EEEEEeC
Q 035500 581 NVAKFSH 587 (606)
Q Consensus 581 ~sV~fsP 587 (606)
+.+++.+
T Consensus 365 ~~l~~~~ 371 (373)
T d2madh_ 365 QVLSVMN 371 (373)
T ss_pred cEEEEec
Confidence 7777654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=98.46 E-value=1.5e-07 Score=89.76 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=64.7
Q ss_pred eEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 128 HVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+.|+|.++.|..+..+..+++|++|.|. .|.|+.+.. |+.+|+|+.|.+.+|.+.++ .++.+++.|+.|.++.
T Consensus 44 ~~L~l~~~~i~~l~~l~~l~~L~~L~ls-~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i----~~l~~l~~L~~l~l~~ 116 (227)
T d1h6ua2 44 TTLSAFGTGVTTIEGVQYLNNLIGLELK-DNQITDLAP--LKNLTKITELELSGNPLKNV----SAIAGLQSIKTLDLTS 116 (227)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCCSCCEEECCSCCCSCC----GGGTTCTTCCEEECTT
T ss_pred CEEECCCCCCCcchhHhcCCCCcEeecC-Cceeecccc--cccccccccccccccccccc----cccccccccccccccc
Confidence 6789999999999988999999999999 889999865 99999999999999987665 8889999999888765
Q ss_pred e
Q 035500 208 C 208 (606)
Q Consensus 208 ~ 208 (606)
|
T Consensus 117 ~ 117 (227)
T d1h6ua2 117 T 117 (227)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.41 E-value=1.7e-06 Score=85.21 Aligned_cols=161 Identities=15% Similarity=0.056 Sum_probs=102.7
Q ss_pred eeEEEEcCCCCCEEEEEe--CCCcEEEEECCCCceEEEEeccC-------------------------------------
Q 035500 440 PRQFEYNPSNPSLMAFGT--LDGEVIVINHENGNVACYIPSIG------------------------------------- 480 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs--~DGtVrIWDi~tg~~v~~~~~~g------------------------------------- 480 (606)
+..++|+| ++++++.++ .++.+.+|+..+++....+...+
T Consensus 108 ~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~ 186 (355)
T d2bbkh_ 108 PWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186 (355)
T ss_dssp GGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred CceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEec
Confidence 45678999 888777764 46788999998887665443110
Q ss_pred ------CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee---cCCCeEEEEEccCCCEEEE
Q 035500 481 ------GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLA 551 (606)
Q Consensus 481 ------H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaS 551 (606)
+...+....+.+ .+..++.++.++.+.+|++.................... .......+++++++..++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~ 265 (355)
T d2bbkh_ 187 EVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265 (355)
T ss_dssp CCCSCTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred ccccceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEE
Confidence 111111233443 456778888999999999887432100000000000000 0112345788999987666
Q ss_pred EeCC----------CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe-EEEEEeCCCeEEE
Q 035500 552 SGYS----------KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL-CLLLLHLTTMSRC 604 (606)
Q Consensus 552 gs~D----------g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~-LLaTgS~DgtIRc 604 (606)
.+.+ ..|.+||..+++.+..+. +...+.+++|+|+|+. ++++++.|+.|+.
T Consensus 266 ~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~--~~~~~~~~a~spDG~~~l~v~~~~d~~i~v 327 (355)
T d2bbkh_ 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFE--MGHEIDSINVSQDEKPLLYALSTGDKTLYI 327 (355)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEE--EEEEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred EeccCCceeecCCCCeEEEEeCCCCcEEEEec--CCCCEEEEEEcCCCCeEEEEEECCCCEEEE
Confidence 5433 469999999999988887 3466889999999985 5678888998875
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.29 E-value=4.3e-07 Score=85.95 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=67.8
Q ss_pred cceEEEccCccccc-hHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 101 KLRVVDLSNITLRN-DNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 101 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.|+.+++.++.+.. .-++.+ -.=+.|+|+.|+|..+.-++.+.+|.+|.|. .|+|+.++. |..||+|+.|.+
T Consensus 47 ~L~~L~l~~~~i~~l~~l~~l----~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~-~n~i~~l~~--l~~l~~L~~L~l 119 (210)
T d1h6ta2 47 SIDQIIANNSDIKSVQGIQYL----PNVTKLFLNGNKLTDIKPLANLKNLGWLFLD-ENKVKDLSS--LKDLKKLKSLSL 119 (210)
T ss_dssp TCCEEECTTSCCCCCTTGGGC----TTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCGGG--GTTCTTCCEEEC
T ss_pred CccEEECcCCCCCCchhHhhC----CCCCEEeCCCccccCccccccCccccccccc-ccccccccc--cccccccccccc
Confidence 56777777754321 011111 1346788888888888878888888888888 678888864 788888888888
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhc
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
.+|.+..+ .++..+++|+++.+.
T Consensus 120 ~~~~~~~~----~~l~~l~~l~~l~~~ 142 (210)
T d1h6ta2 120 EHNGISDI----NGLVHLPQLESLYLG 142 (210)
T ss_dssp TTSCCCCC----GGGGGCTTCCEEECC
T ss_pred cccccccc----ccccccccccccccc
Confidence 88887765 677777877777643
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.28 E-value=6.3e-07 Score=83.98 Aligned_cols=99 Identities=8% Similarity=0.192 Sum_probs=72.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+++.++|.++. ...+..+.. =-+-++|+|++|+|..+..++.+++|.+|.|. .|.++.+.. |+.||+|+.|.+
T Consensus 40 ~~l~~L~l~~~~--i~~l~~l~~-l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~-~n~~~~~~~--l~~l~~L~~L~l 113 (199)
T d2omxa2 40 DQVTTLQADRLG--IKSIDGVEY-LNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITP--LANLTNLTGLTL 113 (199)
T ss_dssp TTCCEEECTTSC--CCCCTTGGG-CTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCSEEEC
T ss_pred cCCCEEECCCCC--CCCcccccc-CCCcCcCccccccccCcccccCCccccccccc-ccccccccc--cccccccccccc
Confidence 467788887743 333332221 12346788998888888888888889999998 777888864 888899999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.++++..+ ..+.++++|+.|.+..+
T Consensus 114 ~~~~~~~~----~~~~~l~~L~~L~l~~n 138 (199)
T d2omxa2 114 FNNQITDI----DPLKNLTNLNRLELSSN 138 (199)
T ss_dssp CSSCCCCC----GGGTTCTTCSEEECCSS
T ss_pred cccccccc----cccchhhhhHHhhhhhh
Confidence 88887765 66788888888876543
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=98.18 E-value=1.2e-06 Score=88.54 Aligned_cols=74 Identities=15% Similarity=0.257 Sum_probs=64.7
Q ss_pred eeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 127 CHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
-+.|+|+++.|..|+.++.|.+|++|+|. +|.|+.+++ |+.||+|++|.+.+|+|..+ .++.+|++|+.|...
T Consensus 46 l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls-~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i----~~l~~l~~L~~L~~~ 118 (384)
T d2omza2 46 VTTLQADRLGIKSIDGVEYLNNLTQINFS-NNQLTDITP--LKNLTKLVDILMNNNQIADI----TPLANLTNLTGLTLF 118 (384)
T ss_dssp CCEEECCSSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECC
T ss_pred CCEEECCCCCCCCccccccCCCCCEEeCc-CCcCCCCcc--ccCCcccccccccccccccc----ccccccccccccccc
Confidence 57899999999999989999999999999 789999976 99999999999999999876 678888888888644
Q ss_pred e
Q 035500 207 M 207 (606)
Q Consensus 207 ~ 207 (606)
.
T Consensus 119 ~ 119 (384)
T d2omza2 119 N 119 (384)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=1.2e-06 Score=79.82 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=92.9
Q ss_pred cCcCccceeeeccCCCcccchhHHHHHHHHhhccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccc
Q 035500 68 MDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGR 145 (606)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 145 (606)
.+...+..+|+.+-.-..+.. . . +.-.+|+.+||++|.+. .+..+. .=..=+.|+|++|.|..+.. ++.
T Consensus 15 ~n~~~lr~L~L~~n~I~~i~~-~----~-~~l~~L~~L~Ls~N~i~--~l~~~~-~l~~L~~L~ls~N~i~~l~~~~~~~ 85 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPVIEN-L----G-ATLDQFDAIDFSDNEIR--KLDGFP-LLRRLKTLLVNNNRICRIGEGLDQA 85 (162)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-G----G-GGTTCCSEEECCSSCCC--EECCCC-CCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCcCcCcEEECCCCCCCccCc-c----c-cccccCCEEECCCCCCC--ccCCcc-cCcchhhhhcccccccCCCcccccc
Confidence 344556667775544344422 1 1 22367999999997654 232221 11246789999999999863 568
Q ss_pred cccccEEecccCCCcccccc-cccccCccccEEEcccccccchhh-hhHHhhcCCchhhhhhce
Q 035500 146 FMHLNTLSLDFCSSLASLHE-DCFSCMPYLMCLSMCETRIVNLWT-TTAAISKLPYLMELRFQM 207 (606)
Q Consensus 146 ~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~l~~~~~~~~~l~~-~~~~l~~~~~l~~l~~~~ 207 (606)
+++|++|+|+ .|.|+++++ +.|..||+|++|++.+|.|+++-. ....+..+|+|+.|.++.
T Consensus 86 l~~L~~L~L~-~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~ 148 (162)
T d1a9na_ 86 LPDLTELILT-NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 148 (162)
T ss_dssp CTTCCEEECC-SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred ccccccceec-cccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCC
Confidence 9999999999 899999976 789999999999999999987621 123578899999997443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.04 E-value=1.4e-06 Score=81.04 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=64.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.-++.++|++|.+...--...++.-..=+.|+|++|+|..+. .+..+.+|++|.|+ .|+|+.++.+-|..+|+|+.|
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls-~N~l~~l~~~~F~~l~~L~~L 107 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG-ENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec-cccccccCHHHHhCCCccccc
Confidence 346677777766532111122222223456777777776653 55567777777777 677777777777777777777
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
.|.+|+|..+-. .++..+++|++|.++
T Consensus 108 ~L~~N~l~~i~~--~~f~~l~~L~~l~L~ 134 (192)
T d1w8aa_ 108 NLYDNQISCVMP--GSFEHLNSLTSLNLA 134 (192)
T ss_dssp ECCSSCCCEECT--TSSTTCTTCCEEECT
T ss_pred ccCCccccccCH--HHhcCCccccccccc
Confidence 777777766521 235566777777644
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.03 E-value=1e-07 Score=90.12 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=32.6
Q ss_pred eeEEEccccchhccccccccccccEEecccCCCcccccc-cccccCccccEEEcccccccc
Q 035500 127 CHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMCLSMCETRIVN 186 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~l~~~~~~~~~ 186 (606)
=+.|+|++|+|..+..++.+++|.+|+|. +|.|+.+++ +.|..||+|+.|+|.+|.+.+
T Consensus 95 L~~L~l~~N~i~~l~~~~~l~~L~~L~L~-~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 95 LEELWISYNQIASLSGIEKLVNLRVLYMS-NNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp CCEEECSEEECCCHHHHHHHHHSSEEEES-EEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred ccccccccccccccccccccccccccccc-cchhccccccccccCCCccceeecCCCcccc
Confidence 34555555555555555555555555555 555555543 345555555555555555543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.97 E-value=4.1e-05 Score=76.61 Aligned_cols=156 Identities=7% Similarity=-0.061 Sum_probs=99.0
Q ss_pred eeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGT-LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
...++|+| ||+++++++ .++.+.+||..+++....+.. +.... +.|.....+++.+.||++.+|+.......
T Consensus 126 p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~--~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~ 198 (368)
T d1mdah_ 126 VHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKS--ASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp TTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEEC--SSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred ccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeec--cCcce----EccCCCceEEEEcCCCCEEEEEecCCcee
Confidence 34678999 998888776 579999999999998887663 22211 12223456777778888888876543211
Q ss_pred cc-----------cc----------------cCC--------cceEEee---cC-----------CCeEEEEEccCCCEE
Q 035500 519 VA-----------DA----------------RGN--------SSVATYY---DF-----------EQLTSVHVNSTDDQF 549 (606)
Q Consensus 519 ~~-----------~l----------------~~~--------~~i~t~~---~~-----------~~V~sV~~sp~g~~L 549 (606)
.. .. .+. ....... .. .....++++|++..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~ 278 (368)
T d1mdah_ 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278 (368)
T ss_dssp CEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred eeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEE
Confidence 00 00 000 0000000 00 012346778887755
Q ss_pred EEEeCC---------CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe-EEEEEeCCCeEEE
Q 035500 550 LASGYS---------KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL-CLLLLHLTTMSRC 604 (606)
Q Consensus 550 aSgs~D---------g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~-LLaTgS~DgtIRc 604 (606)
+....+ ..|.+||..+++.+..+. +...+..++|+|+|+. ++++++.|+.|+.
T Consensus 279 ~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~~a~spDG~~~ly~s~~~~~~v~v 341 (368)
T d1mdah_ 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--NGHDSDAIIAAQDGASDNYANSAGTEVLDI 341 (368)
T ss_dssp EEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--EEEEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred EEEecCCCceeecCCceEEEEECCCCcEeEEec--CCCceeEEEECCCCCEEEEEEeCCCCeEEE
Confidence 443221 358899999999888777 3467889999999974 6788888998864
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.92 E-value=4.2e-05 Score=80.50 Aligned_cols=148 Identities=9% Similarity=-0.023 Sum_probs=102.1
Q ss_pred EEEcCCCCCEEEE-EeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCC-EEEEEECCCe--------------
Q 035500 443 FEYNPSNPSLMAF-GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPS-KLVAGSDSGC-------------- 506 (606)
Q Consensus 443 lafsP~dg~~LaS-Gs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~-~LaSgS~Dgt-------------- 506 (606)
...+| ||+++.+ ...+.+|.+||+.+++....+. .++...+.+++|+|++.. +++..+.+..
T Consensus 77 t~gtp-DGr~lfV~d~~~~rVavIDl~t~k~~~ii~-iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~ 154 (441)
T d1qnia2 77 TDGRY-DGKYLFINDKANTRVARIRLDIMKTDKITH-IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS 154 (441)
T ss_dssp ETTEE-EEEEEEEEETTTTEEEEEETTTTEEEEEEE-CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred ecccC-CCCEEEEEcCCCCEEEEEECCCCcEeeEEe-cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence 34567 8888855 4588999999999998877654 356678999999984333 4555554432
Q ss_pred ---EEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC----------------------------
Q 035500 507 ---VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS---------------------------- 555 (606)
Q Consensus 507 ---IklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D---------------------------- 555 (606)
+..+|..+. ..............+.++|+|+++++++.+
T Consensus 155 ~~~~~~iD~~t~----------~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~ 224 (441)
T d1qnia2 155 YTMFTAIDAETM----------DVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA 224 (441)
T ss_dssp EEEEEEEETTTC----------SEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred cceEEeecCccc----------eeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence 233555542 222333334457788999999988877643
Q ss_pred -------------CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 556 -------------KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 556 -------------g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.+.+++....+.+..++. . .....+.++|+|+++++++..|++|..
T Consensus 225 ~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPv-g-ksPhGv~vSPDGkyl~~~~~~~~tvsv 284 (441)
T d1qnia2 225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIPV-P-KNPHGLNTSPDGKYFIANGKLSPTVSV 284 (441)
T ss_dssp HHHTTCCBCCTTCCCCEEECSSSCSSEEEECC-B-SSCCCEEECTTSCEEEEECTTSSBEEE
T ss_pred EecCCCEEEeCCCCcEEEEcccCCceEEEEeC-C-CCccCceECCCCCEEEEeCCcCCcEEE
Confidence 4555666666666777773 3 335679999999999999999999874
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=97.92 E-value=7.6e-06 Score=82.40 Aligned_cols=77 Identities=26% Similarity=0.397 Sum_probs=66.8
Q ss_pred CceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 125 SSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
...+.+++++|.+.++.-.+...+|++|.|. .+.++.++ .|..+|+|+.|.+.+|++..+ ..+..+++|++|.
T Consensus 197 ~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~-~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~L~~L~ 269 (384)
T d2omza2 197 TNLESLIATNNQISDITPLGILTNLDELSLN-GNQLKDIG--TLASLTNLTDLDLANNQISNL----APLSGLTKLTELK 269 (384)
T ss_dssp TTCSEEECCSSCCCCCGGGGGCTTCCEEECC-SSCCCCCG--GGGGCTTCSEEECCSSCCCCC----GGGTTCTTCSEEE
T ss_pred cccceeeccCCccCCCCcccccCCCCEEECC-CCCCCCcc--hhhcccccchhccccCccCCC----CcccccccCCEee
Confidence 3467899999999999888889999999999 88999985 488999999999999998877 7788999999998
Q ss_pred hcee
Q 035500 205 FQMC 208 (606)
Q Consensus 205 ~~~~ 208 (606)
+.++
T Consensus 270 l~~~ 273 (384)
T d2omza2 270 LGAN 273 (384)
T ss_dssp CCSS
T ss_pred ccCc
Confidence 7654
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.88 E-value=6.5e-06 Score=76.33 Aligned_cols=95 Identities=21% Similarity=0.318 Sum_probs=70.3
Q ss_pred eEEEccCccccchHH-HhhccCCCceeEEEccccchhc-c--ccccccccccEEecccCCCcccccccccccCccccEEE
Q 035500 103 RVVDLSNITLRNDNL-LDLCQVGSSCHVLILRATNIRK-L--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 103 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
++||++++.+- .+ +++. ..-+.|+|++|+|.. + ..++.+++|++|.|. +|.|+.+..+.|..+++|+.|.
T Consensus 11 ~~v~Cs~~~L~--~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~-~N~i~~~~~~~~~~~~~L~~L~ 84 (192)
T d1w8aa_ 11 TTVDCTGRGLK--EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCS--SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEEeCCCcC--ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeecc-ccccccccccccccccccceee
Confidence 36777764332 11 2232 246789999999954 4 466788999999999 8999999999999999999999
Q ss_pred cccccccchhhhhHHhhcCCchhhhhh
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
|.+|++..+-. .++..|++|++|++
T Consensus 85 Ls~N~l~~l~~--~~F~~l~~L~~L~L 109 (192)
T d1w8aa_ 85 LGENKIKEISN--KMFLGLHQLKTLNL 109 (192)
T ss_dssp CCSCCCCEECS--SSSTTCTTCCEEEC
T ss_pred eccccccccCH--HHHhCCCccccccc
Confidence 99999987733 24666777777663
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=5.3e-06 Score=80.87 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=60.4
Q ss_pred EEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 129 VLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 129 ~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|.+++.+..+. .+| +.|++|+|. .|.|+.++.+-|..+|+|+.|.|.+|+|..+ .+...|++|++|.+..
T Consensus 14 ~v~C~~~~L~~iP~~lp--~~l~~L~Ls-~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l----~~~~~l~~L~~L~Ls~ 86 (266)
T d1p9ag_ 14 EVNCDKRNLTALPPDLP--KDTTILHLS-ENLLYTFSLATLMPYTRLTQLNLDRAELTKL----QVDGTLPVLGTLDLSH 86 (266)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECT-TSCCSEEEGGGGTTCTTCCEEECTTSCCCEE----ECCSCCTTCCEEECCS
T ss_pred EEEccCCCCCeeCcCcC--cCCCEEECc-CCcCCCcCHHHhhcccccccccccccccccc----cccccccccccccccc
Confidence 4577777777663 232 579999999 8999999999999999999999999999877 5567899999998765
Q ss_pred e
Q 035500 208 C 208 (606)
Q Consensus 208 ~ 208 (606)
+
T Consensus 87 N 87 (266)
T d1p9ag_ 87 N 87 (266)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=97.79 E-value=8.1e-06 Score=77.39 Aligned_cols=71 Identities=14% Similarity=0.334 Sum_probs=49.0
Q ss_pred eEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+.|+++.|.+.....++.+++|++|+|. +|.|++++. |+.||+|+.|.|++|+|..+ ..|+.+++|++|.+
T Consensus 154 ~~L~l~~n~~~~~~~l~~l~~L~~L~Ls-~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i----~~l~~l~~L~~L~l 224 (227)
T d1h6ua2 154 QYLSIGNAQVSDLTPLANLSKLTTLKAD-DNKISDISP--LASLPNLIEVHLKNNQISDV----SPLANTSNLFIVTL 224 (227)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GGGCTTCCEEECTTSCCCBC----GGGTTCTTCCEEEE
T ss_pred ccccccccccccchhhcccccceecccC-CCccCCChh--hcCCCCCCEEECcCCcCCCC----cccccCCCCCEEEe
Confidence 4477777777666666677777777777 556777754 67777777777777776655 66777777777664
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.77 E-value=1.5e-05 Score=78.54 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=56.4
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
++|||+.|+|+++. .+..+++|++|.+. .+.++.+..+-|..+++|+.|.+.+|++..+.. .-.+.|.+|+.
T Consensus 34 ~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~-~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~-----~~~~~l~~L~~ 107 (305)
T d1xkua_ 34 ALLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLKELPE-----KMPKTLQELRV 107 (305)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS-----SCCTTCCEEEC
T ss_pred CEEECcCCcCCCcChhHhhccccccccccc-cccccccchhhhhCCCccCEecccCCccCcCcc-----chhhhhhhhhc
Confidence 57899999999985 67888999999999 778888888889999999999999998876632 22345555553
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.77 E-value=2.9e-05 Score=80.51 Aligned_cols=109 Identities=8% Similarity=0.072 Sum_probs=76.2
Q ss_pred eeEEEEcCCCCCEEEEEeC---------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTL---------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~---------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
+.++.||| |+++|+.++. +|.+.+||+++++... ...|...+..+.|+| ++.++|.. .|+.+.+|
T Consensus 64 i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~---l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~ 137 (470)
T d2bgra1 64 INDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT---EERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVK 137 (470)
T ss_dssp CCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---SSCCCTTEEEEEECS-STTCEEEE-ETTEEEEE
T ss_pred cceeEECC-CCCEEEEEECCcceeeeccCceEEEEECCCCcccc---cccCCcccccccccc-CcceeeEe-ecccceEE
Confidence 67889999 9999998853 6788999999887543 447888999999999 56777764 57789999
Q ss_pred eCCCCCCCcccccCCcceEEee----------cCCCeEEEEEccCCCEEEEEeCC
Q 035500 511 DLNHIPPKVADARGNSSVATYY----------DFEQLTSVHVNSTDDQFLASGYS 555 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~----------~~~~V~sV~~sp~g~~LaSgs~D 555 (606)
+...+........+. +-..+. .......+.|+|+|+.++....|
T Consensus 138 ~~~~g~~~~~t~~~~-~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 138 IEPNLPSYRITWTGK-EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp SSTTSCCEECCSCCB-TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred ECCCCceeeeeeccC-CCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence 988754311111100 000111 12335668899999999888655
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=1.4e-05 Score=78.13 Aligned_cols=104 Identities=22% Similarity=0.215 Sum_probs=61.7
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccE
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
-.+|+.++|.++.+.. .-.+.+...-.-+.|+|+.|+|..+. .+...+.|+.|.|. .|.++.+..+.|..+|+|+.
T Consensus 128 ~~~L~~l~l~~N~l~~-i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~-~N~l~~i~~~~f~~l~~L~~ 205 (284)
T d1ozna_ 128 LAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH-QNRVAHVHPHAFRDLGRLMT 205 (284)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCE
T ss_pred hcccchhhhccccccc-cChhHhccccchhhcccccCcccccchhhhccccccchhhhh-hccccccChhHhhhhhhccc
Confidence 3456666666655532 11222333334556777777766663 35566667777776 66666666666777777777
Q ss_pred EEcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 177 LSMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 177 l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
|.+.+|++..+.. .++..+++|++|.+.
T Consensus 206 L~l~~N~i~~~~~--~~~~~~~~L~~L~l~ 233 (284)
T d1ozna_ 206 LYLFANNLSALPT--EALAPLRALQYLRLN 233 (284)
T ss_dssp EECCSSCCSCCCH--HHHTTCTTCCEEECC
T ss_pred ccccccccccccc--cccccccccCEEEec
Confidence 7777776665432 445666677766654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.70 E-value=4.7e-05 Score=76.13 Aligned_cols=116 Identities=15% Similarity=-0.077 Sum_probs=78.1
Q ss_pred CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE----------ECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 460 GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG----------SDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 460 GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg----------S~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
..|.+||..+++.+.... ++... .++|+|+ +..++.. +.|++|.+||..+. .++.
T Consensus 46 ~~~~~~d~~~~~~~~~~~--~~~~~--~~a~spD-g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~----------~~~~ 110 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSL--GAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTF----------LPIA 110 (368)
T ss_dssp EEEEEEETTTTEEEEEEE--ECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTC----------CEEE
T ss_pred ceEEEEeCCCCcEEEEEe--CCCCC--cceECCC-CCEEEEEcccCccccccccCCeEEEEECCCC----------cEee
Confidence 346777999999888765 33333 5889994 5655554 35788999999884 2333
Q ss_pred Eeec--------CCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCCC-------CeEEEEEeCCCCe
Q 035500 530 TYYD--------FEQLTSVHVNSTDDQFLASG-YSKNVALYDINTEKPLQLFTDMHRE-------PINVAKFSHHSPL 591 (606)
Q Consensus 530 t~~~--------~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k~v~~l~~gH~~-------~I~sV~fsP~g~~ 591 (606)
.... ......++|+|+|++++.+. .++.+.+||+.+++.+..+.. +.. ....+.+++++..
T Consensus 111 ~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~Dg~~ 187 (368)
T d1mdah_ 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS-ASCFHIHPGAAATHYLGSCPASL 187 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC-SSCCCCEEEETTEEECCCCTTSC
T ss_pred eecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec-cCcceEccCCCceEEEEcCCCCE
Confidence 3321 11134689999999877665 579999999999999888773 322 2233455566654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.65 E-value=0.00088 Score=67.64 Aligned_cols=159 Identities=5% Similarity=-0.004 Sum_probs=98.3
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEECCC-CceEE--EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINHEN-GNVAC--YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi~t-g~~v~--~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+.++.|+| +++++++++. ...|.+|+... +.... .............++|+|++....++.-.+++|.+|+....
T Consensus 147 ~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 147 IHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence 67899999 9998887764 45788887653 33322 22222344678899999954334466667899999998764
Q ss_pred CCCcccccCCcceEEe---------------ecCCCeEEEEEccCCCEEEEEeC-C-----CcEEEEECCCCceeE---E
Q 035500 516 PPKVADARGNSSVATY---------------YDFEQLTSVHVNSTDDQFLASGY-S-----KNVALYDINTEKPLQ---L 571 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~---------------~~~~~V~sV~~sp~g~~LaSgs~-D-----g~I~IWDlrt~k~v~---~ 571 (606)
..... ...... .+......+.++|+|++++++.. + ..|..|++.....+. .
T Consensus 226 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~ 300 (365)
T d1jofa_ 226 THMPV-----YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF 300 (365)
T ss_dssp TCCEE-----EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred CceEE-----EEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE
Confidence 32100 000111 11122567899999998877632 2 237777776432221 1
Q ss_pred Ec--CCCCCCeEEEEEeC-CCCeEEEEEeCCCeEEE
Q 035500 572 FT--DMHREPINVAKFSH-HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 572 l~--~gH~~~I~sV~fsP-~g~~LLaTgS~DgtIRc 604 (606)
+. .......+.++++| +|+++++++..++.|..
T Consensus 301 ~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v 336 (365)
T d1jofa_ 301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI 336 (365)
T ss_dssp EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEE
Confidence 11 01234557799998 78998888888888764
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.61 E-value=0.001 Score=64.98 Aligned_cols=150 Identities=14% Similarity=0.106 Sum_probs=104.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++++| +|+++++...+++|..||.. ++..... .....+.+++|.+ +++++++...++.+..|+.......
T Consensus 30 ~e~iAv~p-dG~l~vt~~~~~~I~~i~p~-g~~~~~~---~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~- 102 (302)
T d2p4oa1 30 LENLASAP-DGTIFVTNHEVGEIVSITPD-GNQQIHA---TVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGT- 102 (302)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEE---ECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSC-
T ss_pred cCCEEECC-CCCEEEEeCCCCEEEEEeCC-CCEEEEE---cCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccc-
Confidence 66789999 99999999999999999966 4433322 4456799999998 5678888888888888887653211
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-------C--CCCeEEEEEeCCCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM-------H--REPINVAKFSHHSP 590 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g-------H--~~~I~sV~fsP~g~ 590 (606)
...+.........+.+.+.++++++++.+.++.+..+|...+......... + ....+.+.+. +.
T Consensus 103 -----~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~ 175 (302)
T d2p4oa1 103 -----VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GN 175 (302)
T ss_dssp -----EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TT
T ss_pred -----eeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CC
Confidence 111222223455899999999999999888999999998877543222210 1 1234555554 55
Q ss_pred eEEEEEeCCCeEE
Q 035500 591 LCLLLLHLTTMSR 603 (606)
Q Consensus 591 ~LLaTgS~DgtIR 603 (606)
+++++.+..+.|.
T Consensus 176 ~l~~~~~~~~~i~ 188 (302)
T d2p4oa1 176 FLYVSNTEKMLLL 188 (302)
T ss_dssp EEEEEETTTTEEE
T ss_pred ceeeecCCCCeEE
Confidence 6777777776654
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=2.2e-05 Score=76.82 Aligned_cols=79 Identities=24% Similarity=0.275 Sum_probs=54.2
Q ss_pred ceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhh
Q 035500 126 SCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
.-++|+|+.|.+..+. .++.+..|.+|.+. .|.|+.++.+.|+.+++|+.|.|.+|++..+.. .++..+++|.+|
T Consensus 106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~-~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~--~~f~~l~~L~~l 182 (284)
T d1ozna_ 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ-DNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRL 182 (284)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEE
T ss_pred cCCEEecCCcccccccccccchhcccchhhhc-cccccccChhHhccccchhhcccccCcccccch--hhhccccccchh
Confidence 3566777777776554 45567777777777 777777777777777777777777777765533 455667777776
Q ss_pred hhce
Q 035500 204 RFQM 207 (606)
Q Consensus 204 ~~~~ 207 (606)
.+.+
T Consensus 183 ~l~~ 186 (284)
T d1ozna_ 183 LLHQ 186 (284)
T ss_dssp ECCS
T ss_pred hhhh
Confidence 6443
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=2.4e-05 Score=74.28 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=23.3
Q ss_pred eEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 128 HVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
+.|||++|+|..+.- +.++++|.+|.|.+|.-.+.++...|..+|+|..|.+
T Consensus 32 ~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~ 85 (242)
T d1xwdc1 32 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 85 (242)
T ss_dssp SEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred CEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence 345555555544432 3344455555555222223344444555555555444
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=4.7e-05 Score=74.90 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=5.7
Q ss_pred hhCCCceeccC
Q 035500 329 ASLPQLEVLDN 339 (606)
Q Consensus 329 ~~Lp~LkvLD~ 339 (606)
+.+|+|+.|+-
T Consensus 222 ~~~~~L~~L~l 232 (284)
T d2astb2 222 GEIPTLKTLQV 232 (284)
T ss_dssp GGCTTCCEEEC
T ss_pred hcCCCCCEEee
Confidence 34555555553
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.57 E-value=0.0036 Score=60.16 Aligned_cols=148 Identities=11% Similarity=0.146 Sum_probs=108.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..+++.+ +++++++....+.+.+++.. ++.+..+....+......+++.+ ++..+++....+.|++||...
T Consensus 116 p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~G----- 187 (279)
T d1q7fa_ 116 PRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEG----- 187 (279)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTC-----
T ss_pred cceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecc-ceeEEeeeccccceeeeecCC-----
Confidence 66788988 88888888888889998865 56666665556777889999987 557788888899999999765
Q ss_pred ccccCCcceEEeec---CCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCCeEEE
Q 035500 520 ADARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGY-SKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 520 ~~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~~LLa 594 (606)
..+.++.. .....+|++.++|+++++-+. ++.|.+|+. .++.+..+.. ......+.+++.|+|. +++
T Consensus 188 ------~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V 259 (279)
T d1q7fa_ 188 ------QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS-VVL 259 (279)
T ss_dssp ------CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE-EEE
T ss_pred ------ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCc-EEE
Confidence 23444432 233688999999998877654 457999984 5777766642 2334678999999985 555
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+ +.+..|+.
T Consensus 260 ~-~~n~~v~~ 268 (279)
T d1q7fa_ 260 A-SKDYRLYI 268 (279)
T ss_dssp E-ETTTEEEE
T ss_pred E-eCCCeEEE
Confidence 4 46777765
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.53 E-value=0.00031 Score=73.65 Aligned_cols=134 Identities=9% Similarity=-0.029 Sum_probs=93.7
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEecc----------------------------CCCCCEEEEEEeeCCCCEE-EEEEC
Q 035500 453 MAFGTLDGEVIVINHENGNVACYIPSI----------------------------GGTNSVLGLCWLKKYPSKL-VAGSD 503 (606)
Q Consensus 453 LaSGs~DGtVrIWDi~tg~~v~~~~~~----------------------------gH~~~V~~L~fsp~~~~~L-aSgS~ 503 (606)
++||+.+|+|+||++.+++.+..+... .|.-........|+ ++++ ++...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpD-Gr~lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYD-GKYLFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEE-EEEEEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCC-CCEEEEEcCC
Confidence 567889999999999999988766421 12223344445674 4555 56668
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEee--cCCCeEEEEEccCCC--EEEEEeCCC-----------------cEEEEE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYY--DFEQLTSVHVNSTDD--QFLASGYSK-----------------NVALYD 562 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~--~LaSgs~Dg-----------------~I~IWD 562 (606)
+.+|.+||+.++ +...... .......++|+|+++ +++.++.+. .+..+|
T Consensus 93 ~~rVavIDl~t~----------k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD 162 (441)
T d1qnia2 93 NTRVARIRLDIM----------KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAID 162 (441)
T ss_dssp TTEEEEEETTTT----------EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEE
T ss_pred CCEEEEEECCCC----------cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeec
Confidence 899999999984 3333333 455689999999997 555555432 235689
Q ss_pred CCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 563 INTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 563 lrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
..+.+....+.. ......+.|+|+|+++++++...
T Consensus 163 ~~t~~v~~qI~v--~~~p~~v~~spdGk~a~vt~~ns 197 (441)
T d1qnia2 163 AETMDVAWQVIV--DGNLDNTDADYTGKYATSTCYNS 197 (441)
T ss_dssp TTTCSEEEEEEE--SSCCCCEEECSSSSEEEEEESCT
T ss_pred CccceeeEEEec--CCCccceEECCCCCEEEEEecCC
Confidence 998888777762 35678899999999987776543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.51 E-value=0.0025 Score=62.98 Aligned_cols=155 Identities=8% Similarity=0.052 Sum_probs=102.0
Q ss_pred ceeEEEEcCCCCCEEEEEeC---------------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCC----CEEE
Q 035500 439 RPRQFEYNPSNPSLMAFGTL---------------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYP----SKLV 499 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~---------------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~----~~La 499 (606)
.+..++++| +|++.++-.. +|.|..++.. ++..... .+-..-.+++|+|+.. .+++
T Consensus 118 ~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~---~~~~~pNGi~~~~d~d~~~~~lyv 192 (314)
T d1pjxa_ 118 GCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD---TAFQFPNGIAVRHMNDGRPYQLIV 192 (314)
T ss_dssp CCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE---EEESSEEEEEEEECTTSCEEEEEE
T ss_pred CCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee---CCcceeeeeEECCCCCcceeEEEE
Confidence 356788999 8888776432 3445555543 3333222 2223457899998532 2455
Q ss_pred EEECCCeEEEEeCCCCCCCcccccCCcceEEeecC--CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 035500 500 AGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF--EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHR 577 (606)
Q Consensus 500 SgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~--~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~ 577 (606)
+-+..+.|..||+...... ........+... ...-.+++.++|+++++....+.|..||...++....+. ...
T Consensus 193 ~d~~~~~i~~~d~~~~g~~----~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~-~p~ 267 (314)
T d1pjxa_ 193 AETPTKKLWSYDIKGPAKI----ENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CPF 267 (314)
T ss_dssp EETTTTEEEEEEEEETTEE----EEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CSS
T ss_pred EeecccceEEeeccCcccc----ceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE-CCC
Confidence 6678888888887653110 000111122211 124679999999998888888999999999888777776 345
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 578 EPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 578 ~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
...++++|.|++..+++|.+..+.|.
T Consensus 268 ~~~t~~afg~d~~~lyVt~~~~g~i~ 293 (314)
T d1pjxa_ 268 EKPSNLHFKPQTKTIFVTEHENNAVW 293 (314)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCCCcEE
Confidence 77899999999988999988887664
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=6.5e-06 Score=74.72 Aligned_cols=81 Identities=20% Similarity=0.108 Sum_probs=68.6
Q ss_pred CCCceeEEEccccchhcccc----ccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhh-----HH
Q 035500 123 VGSSCHVLILRATNIRKLNM----VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTT-----AA 193 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~----~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~-----~~ 193 (606)
.-..-++|||++|+|..+.. ++.+++|++|+|+ .|.|+++++..|-.+++|+.|++.+|.|...+... ..
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls-~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS-GNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCT-TSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccc-cCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 33456789999999998864 4578999999999 99999999988888999999999999999877654 34
Q ss_pred hhcCCchhhhh
Q 035500 194 ISKLPYLMELR 204 (606)
Q Consensus 194 l~~~~~l~~l~ 204 (606)
+..+|+|+.|.
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 77799999986
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00012 Score=65.64 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=54.3
Q ss_pred EEccccchhc-cccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 130 LILRATNIRK-LNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 130 ~~~~~~~~~~-l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
++.+.+.+.+ +..++.+.+|..|.|+.++.|+.|+.+=|..||+|+.|.|.+|+|..+= -.|+..+++|++|.
T Consensus 13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~--~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--PDAFHFTPRLSRLN 86 (156)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC--TTGGGSCSCCCEEE
T ss_pred EEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc--ccccccccccccee
Confidence 5555555544 4677888899999998566799998888999999999999999888761 23455666666554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.31 E-value=0.00031 Score=68.76 Aligned_cols=190 Identities=11% Similarity=0.050 Sum_probs=92.8
Q ss_pred cceEEEccCccccchHHHh-hccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 101 KLRVVDLSNITLRNDNLLD-LCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
+|+.+++.++.+.. +.. .+..=-.=+.|+|++|+|..+.. ..+.+|..|.+. .+.++.+...-|..++.+..+.+
T Consensus 56 ~L~~L~l~~n~~~~--i~~~~f~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~~-~n~l~~l~~~~~~~~~~~~~l~~ 131 (305)
T d1xkua_ 56 NLHTLILINNKISK--ISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVH-ENEITKVRKSVFNGLNQMIVVEL 131 (305)
T ss_dssp TCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCSBCCS-SCCTTCCEEECC-SSCCCBBCHHHHTTCTTCCEEEC
T ss_pred cccccccccccccc--cchhhhhCCCccCEecccCCccCcCcc-chhhhhhhhhcc-ccchhhhhhhhhhcccccccccc
Confidence 56666666643332 111 11111233556666666665542 245566666666 66666666666777777777777
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCccccc-CCCCCCcCCCchhhHHHhhccccCcccchh-h
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQ-ASGADDRVKDNEDQIVCKKFRDADEVELPK-Y 257 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 257 (606)
..+...-......++..+++|..|++.. |..+.-+..... .-. -+.+....... .+.+-..+...-.++++. +
T Consensus 132 ~~n~~~~~~~~~~~~~~l~~L~~l~l~~---n~l~~l~~~~~~-~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~~s~n~ 206 (305)
T d1xkua_ 132 GTNPLKSSGIENGAFQGMKKLSYIRIAD---TNITTIPQGLPP-SLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNS 206 (305)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCS---SCCCSCCSSCCT-TCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSC
T ss_pred ccccccccCCCccccccccccCcccccc---CCccccCcccCC-ccCEEECCCCcCCCC-ChhHhhcccccccccccccc
Confidence 7665554444445566666666665433 222221111000 000 00000000000 000001111222344443 1
Q ss_pred -----hcccchhhhhccCCCCCCCcceecccccC-CCCCCCCcccccc
Q 035500 258 -----LRTMNLMELSSCLSPNLNGHAEMLDEVND-SNEFPGGAHKQDL 299 (606)
Q Consensus 258 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 299 (606)
-+.|.-+..|..|++.+|++..|-+++.. +++..+.+.+|.|
T Consensus 207 l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i 254 (305)
T d1xkua_ 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254 (305)
T ss_dssp CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred ccccccccccccccceeeecccccccccccccccccCCCEEECCCCcc
Confidence 22344456778888888888877666666 6666666666554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.25 E-value=0.0026 Score=60.52 Aligned_cols=148 Identities=11% Similarity=0.081 Sum_probs=100.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..+++++ +++++++....+.+++++-.++..+... .......++++.+ ++.++++-..+..+..++......
T Consensus 59 p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~~~---~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~-- 131 (260)
T d1rwia_ 59 PQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLPF---DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQ-- 131 (260)
T ss_dssp CCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECCC---CSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSC--
T ss_pred ceEEEEcC-CCCEEEeeeeeceeeeeeeccceeeeee---eeeeecccccccc-cceeEeecccccccccccccccee--
Confidence 66788999 8888888888888887776655544322 3345678999987 556766666666677776655211
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
............++++.|+++++++...++.|..+|....... .+....-.....+++.++|. ++++....
T Consensus 132 -------~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g~-l~vsd~~~ 202 (260)
T d1rwia_ 132 -------TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGT-VYVTEHNT 202 (260)
T ss_dssp -------EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCC-EEEEETTT
T ss_pred -------eeeeecccCCcceeeecCCCCEeeeccccccccccccccceee-eeeccccCCCccceeeeeee-eeeeecCC
Confidence 1111122334578999999999888888899999998755433 33323456678999999886 67777766
Q ss_pred CeEE
Q 035500 600 TMSR 603 (606)
Q Consensus 600 gtIR 603 (606)
+.|.
T Consensus 203 ~~i~ 206 (260)
T d1rwia_ 203 NQVV 206 (260)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 6543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.20 E-value=0.0046 Score=58.77 Aligned_cols=147 Identities=8% Similarity=0.045 Sum_probs=102.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..+++++ +++++++-..+..+..++....... .... .......++++++ ++..+++...++.|..+|.....
T Consensus 100 p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~-~~~~-~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~--- 172 (260)
T d1rwia_ 100 PEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT-VLPF-TGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNN--- 172 (260)
T ss_dssp EEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCE-ECCC-CSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCC---
T ss_pred cccccccc-cceeEeeccccccccccccccceee-eeee-cccCCcceeeecC-CCCEeeeccccccccccccccce---
Confidence 77899999 8888888777787888886653332 2221 2233457899988 56788888888899999877631
Q ss_pred ccccCCcceEEe--ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATY--YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~--~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...+ ..-.....|++.++|+++++....+.|..++..... ...+....-.....|+++++|. ++++-.
T Consensus 173 --------~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~-l~vad~ 242 (260)
T d1rwia_ 173 --------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRT-VYVADR 242 (260)
T ss_dssp --------EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCC-EEEEEG
T ss_pred --------eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCC-EEEEEC
Confidence 1122 223446889999999998888888889988776443 3333322335678999999986 677766
Q ss_pred CCCeEE
Q 035500 598 LTTMSR 603 (606)
Q Consensus 598 ~DgtIR 603 (606)
.+..|+
T Consensus 243 ~~~rI~ 248 (260)
T d1rwia_ 243 GNDRVV 248 (260)
T ss_dssp GGTEEE
T ss_pred CCCEEE
Confidence 666665
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.024 Score=52.49 Aligned_cols=148 Identities=15% Similarity=0.107 Sum_probs=88.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCC---cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE-ECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG---EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG-SDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG---tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg-S~DgtIklWDl~~~ 515 (606)
+.+-+||| ||+.||...... .+.+.+...+..... ..+.+......|+|+ +..++.. ..++...++.....
T Consensus 41 ~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~spd-g~~i~~~~~~~~~~~~~~~~~~ 115 (269)
T d2hqsa1 41 LMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQV---ASFPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLA 115 (269)
T ss_dssp EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEE---ECCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETT
T ss_pred eeeeEECC-CCCEEEEEEeeccCcceeeeecccCceeEE---eeeecccccceecCC-CCeeeEeeecCCccceeecccc
Confidence 45678999 999999875443 466667766655432 256778899999995 4555444 34444444443332
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCE-EEEEeCCCc--EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQ-FLASGYSKN--VALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~-LaSgs~Dg~--I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
. .................+++.+.. +++...++. |..+++..+... ... .+........|+|++.++
T Consensus 116 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~-~~~~~~~~~~~spdg~~~ 185 (269)
T d2hqsa1 116 S--------GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RIT-WEGSQNQDADVSSDGKFM 185 (269)
T ss_dssp T--------CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECC-CSSSEEEEEEECTTSSEE
T ss_pred c--------ccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eee-ccccccccccccccccee
Confidence 1 112222223333455567777764 444445554 555565554333 233 356777788999999987
Q ss_pred EEEEeCCCeE
Q 035500 593 LLLLHLTTMS 602 (606)
Q Consensus 593 LaTgS~DgtI 602 (606)
+.+....+..
T Consensus 186 ~~~~~~~~~~ 195 (269)
T d2hqsa1 186 VMVSSNGGQQ 195 (269)
T ss_dssp EEEEECSSCE
T ss_pred EEEeecCCce
Confidence 7776665543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.91 E-value=0.037 Score=54.04 Aligned_cols=150 Identities=9% Similarity=0.025 Sum_probs=94.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC--CeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS--GCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D--gtIklWDl~~~~~ 517 (606)
...++|++ ++++.++-..+|+|..|+..++.....+. .......++++.+ ++.++++...+ ....++.+....
T Consensus 42 lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~--~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~- 116 (319)
T d2dg1a1 42 LEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENG- 116 (319)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTS-
T ss_pred cEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEe--CCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCC-
Confidence 34678998 88988888889999999988766554432 4455688999998 55666654332 233444443321
Q ss_pred CcccccCCcceEEeec---CCCeEEEEEccCCCEEEEEeCC------CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 518 KVADARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGYS------KNVALYDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~D------g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
......... ....+.+++.++|+++++.... +.+..++...+.. ..+. ..-...+.++|+|+
T Consensus 117 -------~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~-~~~~~pnGia~s~d 187 (319)
T d2dg1a1 117 -------DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPII-QNISVANGIALSTD 187 (319)
T ss_dssp -------CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEE-EEESSEEEEEECTT
T ss_pred -------ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-EEEe-eccceeeeeeeccc
Confidence 111112222 2347889999999977765332 3355555544333 2222 12345678999999
Q ss_pred CCeEEEEEeCCCeEE
Q 035500 589 SPLCLLLLHLTTMSR 603 (606)
Q Consensus 589 g~~LLaTgS~DgtIR 603 (606)
+..++++-+..+.|.
T Consensus 188 g~~lyvad~~~~~I~ 202 (319)
T d2dg1a1 188 EKVLWVTETTANRLH 202 (319)
T ss_dssp SSEEEEEEGGGTEEE
T ss_pred cceEEEecccCCceE
Confidence 998888877776654
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.00037 Score=62.36 Aligned_cols=73 Identities=22% Similarity=0.205 Sum_probs=47.5
Q ss_pred eEEEcccc-chhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 128 HVLILRAT-NIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 128 ~~~~~~~~-~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
+.|+|++| +|+.+. .+..+.+|++|+|. +|.|+.|+++-|..+|+|+.|.|.+|++..+-..+ .+..+|..|.
T Consensus 34 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls-~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~---~~~~~l~~L~ 109 (156)
T d2ifga3 34 TELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT---VQGLSLQELV 109 (156)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT---TCSCCCCEEE
T ss_pred CeeecCCCccccccCchhhccccccCcceee-ccccCCcccccccccccccceeccCCCCcccChhh---hccccccccc
Confidence 44666544 466655 45667777777777 77777777777777777777777777777553322 2233455555
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.86 E-value=0.029 Score=54.03 Aligned_cols=148 Identities=6% Similarity=0.025 Sum_probs=99.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe--------ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP--------SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~--------~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
+..+++.+ +++++++.+.++.+..+|...+....... .......+.++.+.. ...+++.+..+.|..++
T Consensus 115 ~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~ 191 (302)
T d2p4oa1 115 LNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIP 191 (302)
T ss_dssp EEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEE
T ss_pred cceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCCCeEEecc
Confidence 56788999 89999988899999999988765432211 012233466777763 45677778888998888
Q ss_pred CCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEE---eC
Q 035500 512 LNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKF---SH 587 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~f---sP 587 (606)
....... .....+........+++.++|+++++...++.|..|+...+.. +.... ..-...++++| +|
T Consensus 192 ~~~~~~~-------~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~-~~~~~pt~vafg~~~~ 263 (302)
T d2p4oa1 192 VDSTDKP-------GEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAE-QGVIGSTAVAFGQTEG 263 (302)
T ss_dssp BCTTSCB-------CCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGG-GTCTTEEEEEECCSTT
T ss_pred ccccccc-------cccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecC-CCCCCceEEEEcCCCC
Confidence 7764221 1122233344467799999999988888889999998764322 22222 13356889999 67
Q ss_pred CCCeEEEEEeC
Q 035500 588 HSPLCLLLLHL 598 (606)
Q Consensus 588 ~g~~LLaTgS~ 598 (606)
+++.++++.+.
T Consensus 264 D~~~Lyvtt~~ 274 (302)
T d2p4oa1 264 DCTAIYVVTNG 274 (302)
T ss_dssp TTTEEEEEECT
T ss_pred CCCEEEEECCC
Confidence 88887777553
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.83 E-value=0.021 Score=55.93 Aligned_cols=153 Identities=10% Similarity=0.052 Sum_probs=96.1
Q ss_pred ceeEEEEcCCCCCEEEEEeC------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 439 RPRQFEYNPSNPSLMAFGTL------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
++..+++.| +|++.++... .|.+..++...+...... ..-....+++|+|++..+.++-+..+.|..||+
T Consensus 131 ~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~---~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~ 206 (319)
T d2dg1a1 131 CIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII---QNISVANGIALSTDEKVLWVTETTANRLHRIAL 206 (319)
T ss_dssp CEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred CCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEe---eccceeeeeeeccccceEEEecccCCceEEEEE
Confidence 366788999 8887766432 233555555433332221 222346789999954335577778899999998
Q ss_pred CCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC-----CCCCCeEEEEEeC
Q 035500 513 NHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD-----MHREPINVAKFSH 587 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~-----gH~~~I~sV~fsP 587 (606)
........... ............--.+++.++|+++++....+.|..||. .|+.+..+.. ++...+++++|.|
T Consensus 207 ~~~g~~~~~~~-~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~ 284 (319)
T d2dg1a1 207 EDDGVTIQPFG-ATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 284 (319)
T ss_dssp CTTSSSEEEEE-EEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred cCCCceecccc-ceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeC
Confidence 76322111000 000001111222567999999999999889999999996 6887766642 2445688999999
Q ss_pred CCCeEEEEEe
Q 035500 588 HSPLCLLLLH 597 (606)
Q Consensus 588 ~g~~LLaTgS 597 (606)
....++++..
T Consensus 285 ~~~~~~~t~~ 294 (319)
T d2dg1a1 285 GTNQLIICSN 294 (319)
T ss_dssp TSCEEEEEEE
T ss_pred CCCEEEEEcC
Confidence 8877666654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=96.81 E-value=0.0007 Score=66.24 Aligned_cols=97 Identities=19% Similarity=0.324 Sum_probs=74.0
Q ss_pred HHH-hhccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCcc
Q 035500 95 MHA-IDQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPY 173 (606)
Q Consensus 95 ~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~ 173 (606)
||. ....|+++||+++.++ .+-++. ...+.|+|++|+|..+.- .+.+|++|.+. .|+++.|.+ ..|+
T Consensus 32 l~~c~~~~l~~LdLs~~~L~--~lp~~~---~~L~~L~Ls~N~l~~lp~--~~~~L~~L~l~-~n~l~~l~~----lp~~ 99 (353)
T d1jl5a_ 32 LRDCLDRQAHELELNNLGLS--SLPELP---PHLESLVASCNSLTELPE--LPQSLKSLLVD-NNNLKALSD----LPPL 99 (353)
T ss_dssp HHHHHHHTCSEEECTTSCCS--CCCSCC---TTCSEEECCSSCCSSCCC--CCTTCCEEECC-SSCCSCCCS----CCTT
T ss_pred HHHHHHcCCCEEEeCCCCCC--CCCCCC---CCCCEEECCCCCCccccc--chhhhhhhhhh-hcccchhhh----hccc
Confidence 444 4567999999996554 333332 246899999999998753 46799999999 899999964 3468
Q ss_pred ccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 174 LMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 174 l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
|+.|.+.+|++..+ .+..++++|+.|.+..
T Consensus 100 L~~L~L~~n~l~~l----p~~~~l~~L~~L~l~~ 129 (353)
T d1jl5a_ 100 LEYLGVSNNQLEKL----PELQNSSFLKIIDVDN 129 (353)
T ss_dssp CCEEECCSSCCSSC----CCCTTCTTCCEEECCS
T ss_pred cccccccccccccc----cchhhhccceeecccc
Confidence 99999999998877 5667788888887544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.77 E-value=0.057 Score=51.32 Aligned_cols=160 Identities=11% Similarity=0.119 Sum_probs=89.8
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCC----CCCEEEEEEeeCCCCEEEE-EECCCeEEEEeCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGG----TNSVLGLCWLKKYPSKLVA-GSDSGCVRLFDLN 513 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH----~~~V~~L~fsp~~~~~LaS-gS~DgtIklWDl~ 513 (606)
.++.++++| +++++++-..++.|++||.+ |+.+..+...+. ...-..+++.+..+..+++ .+.++.|..++..
T Consensus 24 ~P~gvavd~-dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp CEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CccEEEEcC-CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 477889999 88888888888999999965 555544432111 1122333333222222221 1222233333322
Q ss_pred CC--------------------------------CCCcccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCCCcE
Q 035500 514 HI--------------------------------PPKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYSKNV 558 (606)
Q Consensus 514 ~~--------------------------------~~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~Dg~I 558 (606)
.. ....-... ...+.++. +......+++.++++.+++....+.|
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 180 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccce
Confidence 11 00000000 11233332 12346788889889988888888999
Q ss_pred EEEECCCCceeEEEc-CCCCCCeEEEEEeCCCCeEEEEEeC-CCeEE
Q 035500 559 ALYDINTEKPLQLFT-DMHREPINVAKFSHHSPLCLLLLHL-TTMSR 603 (606)
Q Consensus 559 ~IWDlrt~k~v~~l~-~gH~~~I~sV~fsP~g~~LLaTgS~-DgtIR 603 (606)
.+||.. ++.+..+. .++......|++.|+|. ++++-+. ++.|.
T Consensus 181 ~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~ 225 (279)
T d1q7fa_ 181 KVFNYE-GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLT 225 (279)
T ss_dssp EEEETT-CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEE
T ss_pred eeeecC-CceeeeecccccccCCcccccccCCe-EEEEECCCCcEEE
Confidence 999975 56666663 23556678999999997 5655443 34454
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.025 Score=52.34 Aligned_cols=145 Identities=10% Similarity=0.107 Sum_probs=82.5
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEEC--CCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINH--ENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi--~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
.....|+| ++..++.... ++...++.. ....... ...+........|++.....+++...+|...+|......
T Consensus 85 ~~~~~~sp-dg~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~ 160 (269)
T d2hqsa1 85 NGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQ---VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING 160 (269)
T ss_dssp EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEE---CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred cccceecC-CCCeeeEeeecCCccceeeccccccccee---eeeccccccccccccccccceecccccCCceEeeeeccc
Confidence 45678999 8887776553 333333332 2222222 123444555666776555556666677765655544321
Q ss_pred CCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCC-CcEEEE--ECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 517 PKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYS-KNVALY--DINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~D-g~I~IW--Dlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
. ...... .........|+|++..++..+.+ +...+| |...+.. ... .+........|+|+|++|
T Consensus 161 ~---------~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~-~~~~~~~~p~~SPDG~~i 228 (269)
T d2hqsa1 161 G---------APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVL-SSTFLDETPSLAPNGTMV 228 (269)
T ss_dssp S---------CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EEC-CCSSSCEEEEECTTSSEE
T ss_pred c---------cceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEe-ecCccccceEECCCCCEE
Confidence 1 111122 23446778899999877766544 444444 5444433 333 245667788999999998
Q ss_pred EEEEeCCC
Q 035500 593 LLLLHLTT 600 (606)
Q Consensus 593 LaTgS~Dg 600 (606)
+.++...+
T Consensus 229 ~f~s~~~~ 236 (269)
T d2hqsa1 229 IYSSSQGM 236 (269)
T ss_dssp EEEEEETT
T ss_pred EEEEcCCC
Confidence 76665443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.62 E-value=0.048 Score=52.73 Aligned_cols=153 Identities=10% Similarity=0.061 Sum_probs=101.9
Q ss_pred eceeEEEEcCCCCCEEEEEeCC----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLD----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~D----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
.++..+.+.| +|++.++...+ +.-.+|....++...... .-....+++|++++...+++-+..+.|..+++.
T Consensus 103 ~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~---~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d 178 (295)
T d2ghsa1 103 NRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA---DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 178 (295)
T ss_dssp EEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE---EESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred ccceeeEECC-CCCEEEEeccccccccceeEeeecCCcEEEEee---ccCCcceeeecCCCceEEEeecccceeeEeeec
Confidence 4578888999 88877665432 344566666666544332 123467899998655567777888999998876
Q ss_pred CCCCCcccccCCcce-EEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe-CCCC
Q 035500 514 HIPPKVADARGNSSV-ATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS-HHSP 590 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i-~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs-P~g~ 590 (606)
....... ....+ ..... ....-.+++.++|++.++.-..+.|..||. .++.+..+.. -...+++++|- |+..
T Consensus 179 ~~~~~~~---~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l-P~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 179 ARTGLPT---GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV-PGKQTTCPAFIGPDAS 253 (295)
T ss_dssp TTTCCBS---SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC-SCSBEEEEEEESTTSC
T ss_pred ccccccc---cceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC-CCCceEEEEEeCCCCC
Confidence 4221100 01111 11112 233678889999998888878889999996 5788777773 34579999996 7878
Q ss_pred eEEEEEeCC
Q 035500 591 LCLLLLHLT 599 (606)
Q Consensus 591 ~LLaTgS~D 599 (606)
.|++|+...
T Consensus 254 ~LyvTta~~ 262 (295)
T d2ghsa1 254 RLLVTSARE 262 (295)
T ss_dssp EEEEEEBCT
T ss_pred EEEEEECCc
Confidence 888887654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.0023 Score=66.95 Aligned_cols=144 Identities=11% Similarity=0.030 Sum_probs=91.5
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC-CCCCEEEEEEeeCCCCEEEEE---------ECCCeEEEEeCCC
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG-GTNSVLGLCWLKKYPSKLVAG---------SDSGCVRLFDLNH 514 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g-H~~~V~~L~fsp~~~~~LaSg---------S~DgtIklWDl~~ 514 (606)
|.+ ++.++. -..+|.|.+||+.+++....+.... ..-.+....|+| ++.+++.+ |..+.+.++|+.+
T Consensus 24 W~~-~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 24 WIS-DTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp BSS-SSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred EeC-CCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 776 665554 3567889999998877654443221 223567788999 55665554 3457888999887
Q ss_pred CCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCe-------------
Q 035500 515 IPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPI------------- 580 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I------------- 580 (606)
+.. .++.... ....+....|+|+|+.+|-.. ++.|.+.+...+..++....+-.+.|
T Consensus 101 ~~~--------~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~ 171 (465)
T d1xfda1 101 GDP--------QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (465)
T ss_dssp CCC--------EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred Cce--------eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhh
Confidence 432 1111111 123366788999999887765 46788888887776655543333322
Q ss_pred ----EEEEEeCCCCeEEEEEeCCC
Q 035500 581 ----NVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 581 ----~sV~fsP~g~~LLaTgS~Dg 600 (606)
..+-|||+|++|+...-.+.
T Consensus 172 ~~~~~a~~WSPDgk~iaf~~~D~s 195 (465)
T d1xfda1 172 LKTHIAHWWSPDGTRLAYAAINDS 195 (465)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECT
T ss_pred ccccceEEECCCCCeEEEEEeccc
Confidence 46779999998665544333
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.00091 Score=62.82 Aligned_cols=77 Identities=22% Similarity=0.213 Sum_probs=58.8
Q ss_pred ceeEEEccccchhcccc-ccccccccEE-ecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhh
Q 035500 126 SCHVLILRATNIRKLNM-VGRFMHLNTL-SLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~-~~~~~~l~tl-~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
.=+.|+++.|++..+.. +....++.++ .++ +|.|+.++.++|..||+|+.|.|.+|+|..+-. .++..|+.|+.|
T Consensus 154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~-~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~l 230 (242)
T d1xwdc1 154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSD-NNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRAR 230 (242)
T ss_dssp SCEEEECCSSCCCEECTTTTTTCCEEEEECTT-CTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS--SSCTTCCEEESS
T ss_pred cceeeecccccccccccccccchhhhcccccc-ccccccccHHHhcCCCCCCEEECCCCcCCccCH--HHHcCCcccccC
Confidence 44568899999888763 2234555555 456 899999999999999999999999999997722 347777777777
Q ss_pred hh
Q 035500 204 RF 205 (606)
Q Consensus 204 ~~ 205 (606)
.+
T Consensus 231 ~~ 232 (242)
T d1xwdc1 231 ST 232 (242)
T ss_dssp SE
T ss_pred cC
Confidence 64
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.00056 Score=69.22 Aligned_cols=110 Identities=20% Similarity=0.287 Sum_probs=55.5
Q ss_pred ccceeeeccCCCcccchhHHHHHHHHhhccceEEEccCccccchHHHhhc---cCCCceeEEEccccchhccc------c
Q 035500 72 DIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLC---QVGSSCHVLILRATNIRKLN------M 142 (606)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~------~ 142 (606)
+++.+||-....+...+...++.| .+||+++|+++.+..+.++.|+ ..--+=+.|||+.|+|.... .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l----~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~ 78 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 78 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHH----TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred CCCEEEeeCCcCChHHHHHHHHhC----CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence 455666655555554444444443 4566666766666555555443 22222345666666553211 1
Q ss_pred cc-ccccccEEecccCCCccccc----ccccccCccccEEEcccccccc
Q 035500 143 VG-RFMHLNTLSLDFCSSLASLH----EDCFSCMPYLMCLSMCETRIVN 186 (606)
Q Consensus 143 ~~-~~~~l~tl~l~~~~~~~~~~----~~~~~~~p~l~~l~~~~~~~~~ 186 (606)
+. .-.+|.+|+|. ++.|+... ...+..+|+|+.|.+.+|+|..
T Consensus 79 l~~~~~~L~~L~L~-~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 126 (460)
T d1z7xw1 79 LQTPSCKIQKLSLQ-NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126 (460)
T ss_dssp TCSTTCCCCEEECT-TSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred HhcCCCCCCEEECC-CCCccccccccccchhhccccccccccccccchh
Confidence 11 11356666666 44555432 1234556666666666666553
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.0025 Score=62.06 Aligned_cols=132 Identities=20% Similarity=0.237 Sum_probs=78.9
Q ss_pred CccceeeeccCCCc-ccchhHHHHHHHHhhccceEEEccCc-cccchHHHhhccC-CCceeEEEcccc--chhc--cc-c
Q 035500 71 FDIEAVDILSKRPC-FLKEEYIMSLMHAIDQKLRVVDLSNI-TLRNDNLLDLCQV-GSSCHVLILRAT--NIRK--LN-M 142 (606)
Q Consensus 71 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~--l~-~ 142 (606)
+.++.+|+.+ | .+.++=+..+++.. .+|+.++|++. .+..+.+..+... ....+.|+|+.. .+.. +. .
T Consensus 95 ~~L~~L~Ls~---c~~itd~~l~~l~~~~-~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l 170 (284)
T d2astb2 95 SNLVRLNLSG---CSGFSEFALQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 170 (284)
T ss_dssp TTCSEEECTT---CBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred CCCcCccccc---cccccccccchhhHHH-Hhccccccccccccccccchhhhcccccccchhhhccccccccccccccc
Confidence 5667777632 2 24444333443332 56888888763 3444445443333 345677887642 2322 11 2
Q ss_pred ccccccccEEecccCCCcccccccccccCccccEEEccc-ccccchhhhhHHhhcCCchhhhhhcee
Q 035500 143 VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCE-TRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 143 ~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~-~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
+..+++|.+|.|..|+.|+.-.-..+..+|+|++|.|.+ ++|.. ..+.+|.++|+|++|.+.+|
T Consensus 171 ~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~--~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTS
T ss_pred ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh--HHHHHHhcCCCCCEEeeeCC
Confidence 345678888888777788754444566778888888877 45543 23466778888888876665
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=96.24 E-value=0.0011 Score=64.81 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=28.9
Q ss_pred cccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 146 FMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 146 ~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
+++|++|+|+ +|.|++|++ .+|+|+.|.|.+|+|..+ ..+ +++|++|.+++|
T Consensus 283 ~~~L~~L~Ls-~N~l~~lp~----~~~~L~~L~L~~N~L~~l----~~~--~~~L~~L~L~~N 334 (353)
T d1jl5a_ 283 PPSLEELNVS-NNKLIELPA----LPPRLERLIASFNHLAEV----PEL--PQNLKQLHVEYN 334 (353)
T ss_dssp CTTCCEEECC-SSCCSCCCC----CCTTCCEEECCSSCCSCC----CCC--CTTCCEEECCSS
T ss_pred CCCCCEEECC-CCccCcccc----ccCCCCEEECCCCcCCcc----ccc--cCCCCEEECcCC
Confidence 4566666666 556666643 356666666666665544 111 345666655443
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=96.23 E-value=0.0024 Score=62.47 Aligned_cols=104 Identities=20% Similarity=0.229 Sum_probs=73.8
Q ss_pred cceEEEccCccccchHHHhhccCCCceeEEEccccchhc-cccccccccccEEecccCCCcc-cccccccccCccccEEE
Q 035500 101 KLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRK-LNMVGRFMHLNTLSLDFCSSLA-SLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~l~tl~l~~~~~~~-~~~~~~~~~~p~l~~l~ 178 (606)
++..+++..+.+... +......-.+-+.++++.+.+.. +.-++.+..|..|+|+ .|.++ .+++ .|..||+|+.|.
T Consensus 198 ~~~~l~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls-~N~l~g~iP~-~l~~L~~L~~L~ 274 (313)
T d1ogqa_ 198 NLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR-NNRIYGTLPQ-GLTQLKFLHSLN 274 (313)
T ss_dssp CCSEEECCSSEEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECC-SSCCEECCCG-GGGGCTTCCEEE
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccccccccccccCc-cCeecccCCh-HHhCCCCCCEEE
Confidence 444555555433322 12223334467889999888764 3456778999999999 88898 5664 589999999999
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhceecc
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQMCLC 210 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~ 210 (606)
|.+|++.- .+.++.+|++|..|+|++-.|
T Consensus 275 Ls~N~l~g---~iP~~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 275 VSFNNLCG---EIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCSSEEEE---ECCCSTTGGGSCGGGTCSSSE
T ss_pred CcCCcccc---cCCCcccCCCCCHHHhCCCcc
Confidence 99999872 235667888999999987654
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=96.16 E-value=0.0015 Score=63.95 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=29.7
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEccccccc
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIV 185 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~ 185 (606)
++|||++|+|..+. .+..+++|.+|.+.+ |.+...-...|..+|+|..|.+.+|++.
T Consensus 104 ~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~-N~~~~~~p~~l~~l~~L~~l~l~~n~l~ 162 (313)
T d1ogqa_ 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSY-NALSGTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp SEEEEEEECCEEECCGGGGGCTTCCEEECCS-SEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred chhhhccccccccccccccchhhhccccccc-ccccccCchhhccCcccceeeccccccc
Confidence 44666666655543 244555566666663 3333332334556666666666665544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.05 Score=56.32 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=65.8
Q ss_pred eeEEEEcCCCCCEEEEEe---------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGT---------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs---------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
+....||| |+++++.+. ..|...++|+.++............+.+....|+|+ +..+|-.. ++.|.+.
T Consensus 63 ~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD-G~~iafv~-~~nl~~~ 139 (465)
T d1xfda1 63 AIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK-GQQLIFIF-ENNIYYC 139 (465)
T ss_dssp CSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS-TTCEEEEE-TTEEEEE
T ss_pred cceeEECC-CCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccC-CceEEEEe-cceEEEE
Confidence 55677999 999888764 357889999998876543332233445666889995 55555443 6778888
Q ss_pred eCCCCCCCcccccCCcceEEeec----------CCCeEEEEEccCCCEEEEEe
Q 035500 511 DLNHIPPKVADARGNSSVATYYD----------FEQLTSVHVNSTDDQFLASG 553 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~----------~~~V~sV~~sp~g~~LaSgs 553 (606)
+...+....-+-.+.... .+.+ ...-.++.|||+|+.||...
T Consensus 140 ~~~~~~~~~lt~~g~~~~-i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGV-IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp SSSSSCCEEEECCCBTTT-EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred ecCCCceEEEecccCcce-eeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence 776532210000000000 1110 01125778999999888764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.13 E-value=0.038 Score=55.01 Aligned_cols=162 Identities=5% Similarity=-0.080 Sum_probs=87.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCE-EEEEE-CCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSK-LVAGS-DSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~-LaSgS-~DgtIklWDl~~~~ 516 (606)
+.-|+|+| +++++.+++. +.+..|.+.. +....... .........+.+++++... ++++. ..++|..+.+....
T Consensus 42 ~s~la~s~-d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~-~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~ 118 (365)
T d1jofa_ 42 ISWMTFDH-ERKNIYGAAM-KKWSSFAVKSPTEIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CSEEEECT-TSSEEEEEEB-TEEEEEEEEETTEEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCEEEEcC-CCCEEEEEeC-CcEEEEEEeCCCCeEEEee-ecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCC
Confidence 45689999 8888888765 5577777653 22222111 1111223445555532222 22222 23455444433211
Q ss_pred CCcc--ccc--C--CcceEEe--ecCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCC-Ccee--EEEc-CCCCCCeEEE
Q 035500 517 PKVA--DAR--G--NSSVATY--YDFEQLTSVHVNSTDDQFLASGY-SKNVALYDINT-EKPL--QLFT-DMHREPINVA 583 (606)
Q Consensus 517 ~~~~--~l~--~--~~~i~t~--~~~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt-~k~v--~~l~-~gH~~~I~sV 583 (606)
.... ... . ..+.... +...-+.++.|+|+|+++++++. ...|.+|+... +... .... .........+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i 198 (365)
T d1jofa_ 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV 198 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred CcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEE
Confidence 1000 000 0 0111111 12233889999999997777754 45788887653 3321 1111 1234678899
Q ss_pred EEeCCCCeEEEEEeCCCeEEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIRc 604 (606)
+|+|++++++++.-.+++|..
T Consensus 199 ~f~pdg~~~yv~~e~~~~V~v 219 (365)
T d1jofa_ 199 AMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEE
T ss_pred EECCCCceEEEeccCCCEEEE
Confidence 999999998888888887753
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0048 Score=62.02 Aligned_cols=132 Identities=15% Similarity=0.165 Sum_probs=89.8
Q ss_pred ccceeeeccCCCcccchhHHHHHHHH--hhccceEEEccCccccchHHHhhc----cCCCceeEEEccccchhccc----
Q 035500 72 DIEAVDILSKRPCFLKEEYIMSLMHA--IDQKLRVVDLSNITLRNDNLLDLC----QVGSSCHVLILRATNIRKLN---- 141 (606)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~---- 141 (606)
.+..+|+. .+.+..+......++ .+..++.+++.++.++.+.++.|+ +....-+.++++.+.+....
T Consensus 256 ~l~~l~l~---~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l 332 (460)
T d1z7xw1 256 RLRTLWIW---ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 332 (460)
T ss_dssp CCCEEECT---TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred cccccccc---cccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence 45555553 344555554444443 377889999999888877776653 34445578899888765432
Q ss_pred --cccccccccEEecccCCCccc-----ccccccccCccccEEEcccccccch--hhhhHHhhcCCchhhhhhce
Q 035500 142 --MVGRFMHLNTLSLDFCSSLAS-----LHEDCFSCMPYLMCLSMCETRIVNL--WTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 142 --~~~~~~~l~tl~l~~~~~~~~-----~~~~~~~~~p~l~~l~~~~~~~~~l--~~~~~~l~~~~~l~~l~~~~ 207 (606)
+......|++|+|+ +|.|+. |.+.++...+.|+.|+|.+|+|.+- ..-.++|.++++|++|.+.+
T Consensus 333 ~~~~~~~~~L~~L~Ls-~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 406 (460)
T d1z7xw1 333 SSVLAQNRFLLELQIS-NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 406 (460)
T ss_dssp HHHHHHCSSCCEEECC-SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred ccccccccchhhhhee-eecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCC
Confidence 23345589999999 678864 5555556678899999999999762 23345678889999998554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=95.52 E-value=0.017 Score=56.97 Aligned_cols=134 Identities=14% Similarity=0.134 Sum_probs=86.7
Q ss_pred CccceeeeccCCCcccchhHHHHHHHH--hhccceEEEccCccccchHHHhhcc------------CCCceeEEEccccc
Q 035500 71 FDIEAVDILSKRPCFLKEEYIMSLMHA--IDQKLRVVDLSNITLRNDNLLDLCQ------------VGSSCHVLILRATN 136 (606)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 136 (606)
..+..+|+- .|.+..+.+..+..+ -+..||.++|+.+.++..-...+++ .-..=+.++++.|+
T Consensus 93 ~~L~~L~L~---~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~ 169 (344)
T d2ca6a1 93 PKLHTVRLS---DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 169 (344)
T ss_dssp TTCCEEECC---SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred CCccccccc---ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence 357777763 344555444444333 3678889999888777654433321 22233568888887
Q ss_pred hhcccc------ccccccccEEecccCCCcccc-----cccccccCccccEEEcccccccch-hhhh-HHhhcCCchhhh
Q 035500 137 IRKLNM------VGRFMHLNTLSLDFCSSLASL-----HEDCFSCMPYLMCLSMCETRIVNL-WTTT-AAISKLPYLMEL 203 (606)
Q Consensus 137 ~~~l~~------~~~~~~l~tl~l~~~~~~~~~-----~~~~~~~~p~l~~l~~~~~~~~~l-~~~~-~~l~~~~~l~~l 203 (606)
+..-++ ++.+..|++|.|. .++|+.- -...+..+|+|+.|.+.+|.|... .+.+ .+|...++|++|
T Consensus 170 i~~~~~~~l~~~l~~~~~L~~L~L~-~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L 248 (344)
T d2ca6a1 170 LENGSMKEWAKTFQSHRLLHTVKMV-QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248 (344)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECC-SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred ccccccccccchhhhhhhhcccccc-cccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence 654332 3467789999998 6677642 234578899999999999987543 1222 467788999999
Q ss_pred hhcee
Q 035500 204 RFQMC 208 (606)
Q Consensus 204 ~~~~~ 208 (606)
.+..|
T Consensus 249 ~Ls~n 253 (344)
T d2ca6a1 249 GLNDC 253 (344)
T ss_dssp ECTTC
T ss_pred hhhcC
Confidence 87665
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.52 E-value=0.34 Score=46.41 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=94.6
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccccc
Q 035500 444 EYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 444 afsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~ 523 (606)
.|++.++.+..+=-..++|.-||..+++.. .+.. ...+.++++.+ ++.++ .++.+ -+..+|..+++.
T Consensus 24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~---~~~~~~i~~~~-dg~l~-va~~~-gl~~~d~~tg~~------ 90 (295)
T d2ghsa1 24 TFDPASGTAWWFNILERELHELHLASGRKT-VHAL---PFMGSALAKIS-DSKQL-IASDD-GLFLRDTATGVL------ 90 (295)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC---SSCEEEEEEEE-TTEEE-EEETT-EEEEEETTTCCE------
T ss_pred eEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC---CCCcEEEEEec-CCCEE-EEEeC-ccEEeeccccee------
Confidence 488856666655557889999999987654 3332 34688999887 44444 45565 478899887421
Q ss_pred CCcceEEeecC---CCeEEEEEccCCCEEEEEeCC----CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 524 GNSSVATYYDF---EQLTSVHVNSTDDQFLASGYS----KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 524 ~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~D----g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
..+...... ..++++.+.|+|++.++.... +.-.+|.+..++....+. .-..-+.++|+|++..++.+-
T Consensus 91 --~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~--~~~~~Ng~~~s~d~~~l~~~d 166 (295)
T d2ghsa1 91 --TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA--DISIPNSICFSPDGTTGYFVD 166 (295)
T ss_dssp --EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE--EESSEEEEEECTTSCEEEEEE
T ss_pred --eEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee--ccCCcceeeecCCCceEEEee
Confidence 111111111 237899999999977765432 345677777776655554 234567899999999888888
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
+..+.|.
T Consensus 167 t~~~~I~ 173 (295)
T d2ghsa1 167 TKVNRLM 173 (295)
T ss_dssp TTTCEEE
T ss_pred cccceee
Confidence 7776664
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=95.30 E-value=0.01 Score=58.52 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=51.3
Q ss_pred hccceEEEccCccccchHHHhhccC----CCceeEEEccccchhc-----c-ccccccccccEEecccCCCccccccccc
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQV----GSSCHVLILRATNIRK-----L-NMVGRFMHLNTLSLDFCSSLASLHEDCF 168 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-----l-~~~~~~~~l~tl~l~~~~~~~~~~~~~~ 168 (606)
+.+|+.++|+.+.++.+.+..+... --.=+.|+|+.|.|-. | ..+...+.|++|+|+ ++.|+.-+-.-+
T Consensus 185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls-~n~i~~~g~~~l 263 (344)
T d2ca6a1 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN-DCLLSARGAAAV 263 (344)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT-TCCCCHHHHHHH
T ss_pred hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh-cCccCchhhHHH
Confidence 4566666666666655433322111 1122446666666533 2 233455666666666 445554221111
Q ss_pred ----c--cCccccEEEcccccccchh--hhhHHh-hcCCchhhhhhc
Q 035500 169 ----S--CMPYLMCLSMCETRIVNLW--TTTAAI-SKLPYLMELRFQ 206 (606)
Q Consensus 169 ----~--~~p~l~~l~~~~~~~~~l~--~~~~~l-~~~~~l~~l~~~ 206 (606)
. ..+.|+.|.|.+|+|..-. .-..+| +|+++|+.|.++
T Consensus 264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~ 310 (344)
T d2ca6a1 264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 310 (344)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECC
Confidence 1 2355666666666664411 112223 255666666543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=94.73 E-value=0.22 Score=48.25 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=75.9
Q ss_pred eeEEEEcCCCCC-----EEEEEeCCCcEEEEECCCCceEEE----EeccC-CCCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 440 PRQFEYNPSNPS-----LMAFGTLDGEVIVINHENGNVACY----IPSIG-GTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 440 V~slafsP~dg~-----~LaSGs~DGtVrIWDi~tg~~v~~----~~~~g-H~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
+..++|+| +++ +.++-+..+.|..||+.....+.. ....+ +....-++++.+ ++++.++....+.|.+
T Consensus 174 pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~ 251 (314)
T d1pjxa_ 174 PNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEV 251 (314)
T ss_dssp EEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEE
T ss_pred eeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEEEE
Confidence 55788988 553 555667889999998754322221 11111 223456899987 5677777778899999
Q ss_pred EeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCC-EEEEEeCCCcEEEEECC
Q 035500 510 FDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDD-QFLASGYSKNVALYDIN 564 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlr 564 (606)
||...+ .....+.. ....++++|.|+++ ++++.+.++.|.-.++.
T Consensus 252 ~dp~~g----------~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 252 FGPDGG----------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp ECTTCB----------SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EeCCCC----------EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 998763 23444443 34588999999886 66777778888888765
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.53 E-value=0.2 Score=45.81 Aligned_cols=115 Identities=6% Similarity=-0.018 Sum_probs=66.6
Q ss_pred EcCCC--CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE-ECCC-----eEEEEeCCCCC
Q 035500 445 YNPSN--PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG-SDSG-----CVRLFDLNHIP 516 (606)
Q Consensus 445 fsP~d--g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg-S~Dg-----tIklWDl~~~~ 516 (606)
.+| + |+.+|..+ +|.|.+.|+.+++... + ..+.+.+...+|+| ++..|+-. ..++ .|.+++...+.
T Consensus 6 ~sP-di~G~~v~f~~-~~dl~~~d~~~g~~~~-L--t~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 6 LNP-DIHGDRIIFVC-CDDLWEHDLKSGSTRK-I--VSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp EEE-EEETTEEEEEE-TTEEEEEETTTCCEEE-E--ECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred cCC-CCCCCEEEEEe-CCcEEEEECCCCCEEE-E--ecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence 578 7 88888765 5678888999887654 2 36667789999999 55666543 3232 35555555432
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC------CcEEEEECCCCce
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS------KNVALYDINTEKP 568 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D------g~I~IWDlrt~k~ 568 (606)
. ..+. ...-............+|+|+|+.++..... ..+..++...+..
T Consensus 80 ~--~~lt-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (281)
T d1k32a2 80 I--KRIT-YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF 134 (281)
T ss_dssp E--EECC-CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred e--EEee-ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence 1 0000 0000001111235678899999988765332 2345556555443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.95 E-value=2.5 Score=39.42 Aligned_cols=151 Identities=7% Similarity=-0.020 Sum_probs=92.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|++.+..+..+-..++.|+..++..+.....+. .....+.++++...++.+..+-...+.|.+.++...
T Consensus 38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~--~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~---- 111 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---- 111 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----
T ss_pred EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE--eccccccEEEEeccCCeEEEeccCCCEEEEEecCCc----
Confidence 66789998444444444567889888887655443332 233568899998644444456567789999998763
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEe-CCCcEEEE--ECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASG-YSKNVALY--DINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs-~Dg~I~IW--Dlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
........ ......++++|...+++-.. ..+.-+|| ++.......... ..-...+.+++.+.+..++.+
T Consensus 112 ------~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-~~~~~P~glaiD~~~~~lYw~ 184 (263)
T d1npea_ 112 ------QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-DNLGLPNGLTFDAFSSQLCWV 184 (263)
T ss_dssp ------SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-TTCSCEEEEEEETTTTEEEEE
T ss_pred ------eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee-ecccccceEEEeecCcEEEEE
Confidence 12222222 35588999999877555443 22333444 554333333232 233566889999888877777
Q ss_pred EeCCCeEE
Q 035500 596 LHLTTMSR 603 (606)
Q Consensus 596 gS~DgtIR 603 (606)
-...+.|.
T Consensus 185 d~~~~~I~ 192 (263)
T d1npea_ 185 DAGTHRAE 192 (263)
T ss_dssp ETTTTEEE
T ss_pred eCCCCEEE
Confidence 66666554
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.76 E-value=0.84 Score=48.00 Aligned_cols=51 Identities=10% Similarity=-0.063 Sum_probs=37.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 545 TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 545 ~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.+.++++|+.|+.++-+|.++|+.+.++.-+....-.-+.|..+|+..++.
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence 467888899999999999999999988875433333346666677644433
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.72 E-value=0.041 Score=48.83 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=41.4
Q ss_pred HHhhccceEEEccC-ccccchHHHhhcc---CCCceeEEEccccchhccc------cccccccccEEecccCCCcccccc
Q 035500 96 HAIDQKLRVVDLSN-ITLRNDNLLDLCQ---VGSSCHVLILRATNIRKLN------MVGRFMHLNTLSLDFCSSLASLHE 165 (606)
Q Consensus 96 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~------~~~~~~~l~tl~l~~~~~~~~~~~ 165 (606)
+.=+.+|+.++|++ ..++.+.+..|+. ..-.-+.|+|+.|.+..-. ++..-..|++|+|+ .|.|+.-.-
T Consensus 11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~-~n~i~~~g~ 89 (167)
T d1pgva_ 11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE-SNFLTPELL 89 (167)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC-SSBCCHHHH
T ss_pred HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeee-hhhcchHHH
Confidence 33356777777776 3566666655543 2223334444444332110 11223445555665 445554211
Q ss_pred -c---ccccCccccEEEcccccccc
Q 035500 166 -D---CFSCMPYLMCLSMCETRIVN 186 (606)
Q Consensus 166 -~---~~~~~p~l~~l~~~~~~~~~ 186 (606)
. .....+.|+.|.+.+|++..
T Consensus 90 ~~l~~aL~~n~sL~~L~l~~n~~~~ 114 (167)
T d1pgva_ 90 ARLLRSTLVTQSIVEFKADNQRQSV 114 (167)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred HHHHHHHHhCCcCCEEECCCCcCCC
Confidence 0 12223445555555555444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.60 E-value=5.2 Score=37.04 Aligned_cols=152 Identities=9% Similarity=-0.068 Sum_probs=91.1
Q ss_pred eeEEEEcCCCCCEEEEE-eCCCcEEEEECCCCce---EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFG-TLDGEVIVINHENGNV---ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSG-s~DGtVrIWDi~tg~~---v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+..++|++ ..+.+.-. ..++.|+-.++..... ..... ......+.++++.+.++.+..+-+..+.|.+.++...
T Consensus 32 ~~~id~d~-~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~-~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~ 109 (266)
T d1ijqa1 32 VVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (266)
T ss_dssp EEEEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred eEEEEEEe-CCCEEEEEECCCCEEEEEEecCCCCCcceEEEE-eCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCc
Confidence 66788998 44555554 4566677666543111 11111 1223456788887755566666677889999998863
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEE--eCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLAS--GYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSg--s~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
. .............+++++|...++.-+ +..+.|.-.++.......... ..-...+.+++.+.+..++
T Consensus 110 ~---------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~-~~~~~p~gl~iD~~~~~lY 179 (266)
T d1ijqa1 110 K---------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLY 179 (266)
T ss_dssp S---------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTEEE
T ss_pred e---------EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc-cccceeeEEEeeccccEEE
Confidence 1 112222234557899999876544433 234567666776444433333 2345678999999888888
Q ss_pred EEEeCCCeEE
Q 035500 594 LLLHLTTMSR 603 (606)
Q Consensus 594 aTgS~DgtIR 603 (606)
.+-+..+.|.
T Consensus 180 w~d~~~~~I~ 189 (266)
T d1ijqa1 180 WVDSKLHSIS 189 (266)
T ss_dssp EEETTTTEEE
T ss_pred EecCCcCEEE
Confidence 8777766665
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=91.58 E-value=0.57 Score=42.52 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=57.5
Q ss_pred EeeC-CCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC-C-----CcEEEEE
Q 035500 490 WLKK-YPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY-S-----KNVALYD 562 (606)
Q Consensus 490 fsp~-~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~-D-----g~I~IWD 562 (606)
.+|+ .+..++-.+ +|.|.+.|+..+ .....-.+...+...+|||+|+.||-.+. + ..|.+++
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g----------~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~ 74 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSG----------STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN 74 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTC----------CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred cCCCCCCCEEEEEe-CCcEEEEECCCC----------CEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEE
Confidence 4563 045554443 456777788873 22222234556888999999998875432 2 2477778
Q ss_pred CCCCceeEEEcC-----CCCCCeEEEEEeCCCCeEEEE
Q 035500 563 INTEKPLQLFTD-----MHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 563 lrt~k~v~~l~~-----gH~~~I~sV~fsP~g~~LLaT 595 (606)
..+++..+.-.. +.........|+|+|+.++.+
T Consensus 75 ~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 75 GENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp TTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred ecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence 877765432210 122345678999999976654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=91.47 E-value=1.6 Score=45.46 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=36.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 545 TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 545 ~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.+.++++|+.||.++-+|.++|+.+..+..+....-.-+.|..+|+..++.
T Consensus 468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v 518 (560)
T d1kv9a2 468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAI 518 (560)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 467888999999999999999999988875432222335666677644443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.72 E-value=1.8 Score=45.41 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=39.2
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe-EEEEEe
Q 035500 544 STDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL-CLLLLH 597 (606)
Q Consensus 544 p~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~-LLaTgS 597 (606)
-.+.++++|+.||.++-+|.++|+.+..++.+....-.-+.|..+|+. +++.++
T Consensus 495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ag 549 (582)
T d1flga_ 495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence 346788889999999999999999998888543333334677777764 444443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=90.18 E-value=2.6 Score=44.26 Aligned_cols=53 Identities=11% Similarity=0.032 Sum_probs=37.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe-EEEEEe
Q 035500 545 TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL-CLLLLH 597 (606)
Q Consensus 545 ~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~-LLaTgS 597 (606)
.+.+++.|+.||.++-+|.++|+.+..+.-+....-.-+.|..+|+. +.+.++
T Consensus 483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~~G 536 (596)
T d1w6sa_ 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (596)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEEec
Confidence 46788889999999999999999998887433222233556567764 443443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.13 E-value=6.8 Score=37.81 Aligned_cols=125 Identities=14% Similarity=0.179 Sum_probs=84.9
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q 035500 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVA 520 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~ 520 (606)
-+.-.|| ..+.+|.-+ ..++.|||+++...++.+.+ ...|.-..|-. ++.|+-.+ +..|.-|++...
T Consensus 66 dsAIMhP-~~~IiALra-g~~LQiFnletK~klks~~~---~e~VvfWkWis--~~~L~lVT-~taVYHW~~~g~----- 132 (327)
T d1utca2 66 DSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGE----- 132 (327)
T ss_dssp SEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC---SSCCCEEEESS--SSEEEEEC-SSEEEEEESSSS-----
T ss_pred hhhhcCC-CCcEEEEec-CCeEEEEehhHhhhhceEEc---CCCcEEEEecC--CCEEEEEc-CCceEEEcccCC-----
Confidence 3445889 778888877 56899999999998887654 34688888863 45665555 457999999653
Q ss_pred cccCCcceEEeecC-----CCeEEEEEccCCCEEEEEe---C----CCcEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 521 DARGNSSVATYYDF-----EQLTSVHVNSTDDQFLASG---Y----SKNVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 521 ~l~~~~~i~t~~~~-----~~V~sV~~sp~g~~LaSgs---~----Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
..|.+.+..+ .+|-.-..+++.++++..| . .|.+.+|..+.+. -+.++ ||...-..+.
T Consensus 133 ----s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ie-Ghaa~F~~~~ 202 (327)
T d1utca2 133 ----SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE-GHAASFAQFK 202 (327)
T ss_dssp ----CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEEC-CSEEEEEEEC
T ss_pred ----CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Ccccc-ceeeeeEEEE
Confidence 3466666633 4476777788888766543 2 3778899887553 34555 6754444443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.77 E-value=7.6 Score=35.84 Aligned_cols=149 Identities=6% Similarity=-0.025 Sum_probs=89.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE-ECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG-SDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg-S~DgtIklWDl~~~~~~ 518 (606)
+..+++.+..+++..+-...++|.+.++.......... .......+++.+|..+.++.+. +..+.|.-.++...
T Consensus 79 p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~--~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs--- 153 (266)
T d1ijqa1 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--- 153 (266)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred cceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEc--CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---
Confidence 66788988566566665677899999988655433333 4456688999998554444443 23344555555442
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~~LLaT 595 (606)
....... .-...+++++.+.++.+.-+ +..+.|...|+........... ........+++. +.+++.+
T Consensus 154 -------~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~t 224 (266)
T d1ijqa1 154 -------DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT 224 (266)
T ss_dssp -------CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE
T ss_pred -------ceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEE
Confidence 1222222 22446899999887755544 5668899999875544333331 122345566665 4567777
Q ss_pred EeCCCeE
Q 035500 596 LHLTTMS 602 (606)
Q Consensus 596 gS~DgtI 602 (606)
-..++.|
T Consensus 225 d~~~~~I 231 (266)
T d1ijqa1 225 DIINEAI 231 (266)
T ss_dssp ETTTTEE
T ss_pred ECCCCeE
Confidence 6565554
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.70 E-value=2.9 Score=42.23 Aligned_cols=53 Identities=21% Similarity=0.468 Sum_probs=39.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec------cCCCCCEEEEEEeeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS------IGGTNSVLGLCWLKK 493 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~------~gH~~~V~~L~fsp~ 493 (606)
+++|+|.| +++++++--..|+|++++..++........ ..-.+...+++++|+
T Consensus 29 P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 29 PHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred ceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 88999999 898888776689999999887765443321 112356789999984
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=89.69 E-value=6.4 Score=39.83 Aligned_cols=143 Identities=8% Similarity=0.031 Sum_probs=92.9
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCC------------------eEE
Q 035500 449 NPSLMAFGT-LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSG------------------CVR 508 (606)
Q Consensus 449 dg~~LaSGs-~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~Dg------------------tIk 508 (606)
||+++.... .+++|.+-|+.+.+.....+. .....+.+++..+. +..+++.++.+. .+.
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 677777665 789999999999887665543 55567888877542 456777777643 245
Q ss_pred EEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC---------------------------------
Q 035500 509 LFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS--------------------------------- 555 (606)
Q Consensus 509 lWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D--------------------------------- 555 (606)
.+|..+++ -............+.++++|+++++.+.+
T Consensus 177 ~ID~~tm~----------V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G 246 (459)
T d1fwxa2 177 AVDADKWE----------VAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 246 (459)
T ss_dssp EEETTTTE----------EEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred EEecCCce----------EEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence 56666531 11112223345678899999988888754
Q ss_pred -----CcEEEEECCCC---ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 556 -----KNVALYDINTE---KPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 556 -----g~I~IWDlrt~---k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.+.+-|.+.. ..+..++. ....+.+..+|+|+++++++..+.++..
T Consensus 247 k~~eingV~VVD~~~~~~~~v~~yIPV--pKsPHGV~vSPDGKyi~VaGKLs~tVSV 301 (459)
T d1fwxa2 247 DYQELNGVKVVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVTV 301 (459)
T ss_dssp CSEEETTEEEEECSGG--CSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEEE
T ss_pred CcEEeCCceeecccccCCcceeEEEec--CCCCCceEECCCCCEEEEeCCcCCcEEE
Confidence 33456666642 22333332 2334578999999999999998887753
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=89.26 E-value=2.9 Score=43.60 Aligned_cols=53 Identities=6% Similarity=-0.018 Sum_probs=36.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC-eEEEEEe
Q 035500 545 TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP-LCLLLLH 597 (606)
Q Consensus 545 ~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~-~LLaTgS 597 (606)
.+.++++|+.|+.++.+|.++|+.+.++..+....-.-+.|..+|+ |+.++++
T Consensus 487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G 540 (573)
T d1kb0a2 487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVG 540 (573)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence 4678888999999999999999999888743221112255555665 4444444
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=89.11 E-value=0.15 Score=44.63 Aligned_cols=63 Identities=10% Similarity=0.127 Sum_probs=38.9
Q ss_pred CCchhHHHHhhhcCcCccceeeeccCCCcccchhHHHHHHHHh--hccceEEEccCccccchHHHhhc
Q 035500 56 ADIYPLIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAI--DQKLRVVDLSNITLRNDNLLDLC 121 (606)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~ 121 (606)
+|+..+|+-+.+= .+.+..+++-+ ...+..+=+..+.+++ |..|+.++|+++.+|.+.+..|+
T Consensus 3 ~~i~~~l~~~~~~-~~~L~~L~L~~--~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~ 67 (166)
T d1io0a_ 3 TDVEETLKRIQNN-DPDLEEVNLNN--IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA 67 (166)
T ss_dssp CCHHHHHHHHHTT-CTTCCEEECTT--CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH
T ss_pred ccHHHHHHHHHhc-CCCCcEEEcCC--CCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHH
Confidence 4555666655443 34666666531 2345666666666664 67788888888777777666554
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.72 E-value=10 Score=34.85 Aligned_cols=149 Identities=4% Similarity=-0.106 Sum_probs=87.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..+++++..+++..+-...+.|.+.++.......... .......+++.+|..+..+.+-...+.-+||......
T Consensus 81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~--~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG--- 155 (263)
T d1npea_ 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD--TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--- 155 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS---
T ss_pred ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec--ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC---
Confidence 77889987455454555667899999987544332222 3345689999999665555554333344555443321
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
........ .-....++++.+.++.+.-+ ...+.|...|+..+.....+. +- .....+++. +.+++.|-.
T Consensus 156 -----~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-~~-~~P~~lav~--~~~lYwtd~ 226 (263)
T d1npea_ 156 -----TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GL-QYPFAVTSY--GKNLYYTDW 226 (263)
T ss_dssp -----CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CC-CSEEEEEEE--TTEEEEEET
T ss_pred -----CCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-CC-CCcEEEEEE--CCEEEEEEC
Confidence 11222222 22446789998887766444 566889999997655443444 22 234567765 456776654
Q ss_pred CCCeE
Q 035500 598 LTTMS 602 (606)
Q Consensus 598 ~DgtI 602 (606)
..+.|
T Consensus 227 ~~~~I 231 (263)
T d1npea_ 227 KTNSV 231 (263)
T ss_dssp TTTEE
T ss_pred CCCEE
Confidence 44433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=87.62 E-value=1.1 Score=43.03 Aligned_cols=114 Identities=13% Similarity=0.076 Sum_probs=69.7
Q ss_pred EcCCCCCEEEEEeCCC-----------cEEEEECCCCceEEEEe-ccCCCCCEEEEEEeeCCCCEEEEEECC-CeEEEEe
Q 035500 445 YNPSNPSLMAFGTLDG-----------EVIVINHENGNVACYIP-SIGGTNSVLGLCWLKKYPSKLVAGSDS-GCVRLFD 511 (606)
Q Consensus 445 fsP~dg~~LaSGs~DG-----------tVrIWDi~tg~~v~~~~-~~gH~~~V~~L~fsp~~~~~LaSgS~D-gtIklWD 511 (606)
.-+.++++++.|+.+. .+.+||..++....... ..+|.....+.++.+ ++..++.|+.+ .++.+||
T Consensus 26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd 104 (387)
T d1k3ia3 26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYD 104 (387)
T ss_dssp EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEE
T ss_pred EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCcceeEec
Confidence 4455888999888531 37799998876533111 123443445667776 56777777655 5899999
Q ss_pred CCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC------CcEEEEECCCCc
Q 035500 512 LNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS------KNVALYDINTEK 567 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D------g~I~IWDlrt~k 567 (606)
..+.. + ...........-.+.+..+++.+++.|+.+ ..+.+||+.+.+
T Consensus 105 ~~~~~-----w---~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 105 SSSDS-----W---IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp GGGTE-----E---EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred CccCc-----c---cccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 87631 0 001111111123456667788988888753 468999998763
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=86.22 E-value=0.83 Score=39.50 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=44.0
Q ss_pred EEeeccccCCCchhHHHHhhhcCc-CccceeeeccCCCcccchhHHHHHHHHh--hccceEEEccCccccchHHHhhcc
Q 035500 47 LVYLDQLKNADIYPLIDVFTEMDS-FDIEAVDILSKRPCFLKEEYIMSLMHAI--DQKLRVVDLSNITLRNDNLLDLCQ 122 (606)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~ 122 (606)
++-|...+++...-+..++.++.. .-++.+|+. .|.+..+-+..+..++ |..++.++|+++.+|.+.++-|+.
T Consensus 21 ~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls---~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~ 96 (166)
T d1io0a_ 21 EVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV---GTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 96 (166)
T ss_dssp EEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT---TSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred EEEcCCCCCCCHHHHHHHHHHHhcCCccCeeecc---CCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence 344555555544555555554432 457777774 3566666555555543 778888888888888777765553
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=84.30 E-value=1.2 Score=38.57 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=56.4
Q ss_pred CccceeeeccCCCcccchhHHHHHHHHh--hccceEEEccCccccchHHHhhcc---CCCceeEEEccccchhccc----
Q 035500 71 FDIEAVDILSKRPCFLKEEYIMSLMHAI--DQKLRVVDLSNITLRNDNLLDLCQ---VGSSCHVLILRATNIRKLN---- 141 (606)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~---- 141 (606)
+.+..+|+-+- -.+..+=+..+.+++ |..|+.++|+++.+|.+....|+. .--.=+.|+|++|+|..-+
T Consensus 15 ~~L~~L~L~~~--~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 15 TDLKEVNINNM--KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp SSCCEEECTTC--CSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCcEEEeCCC--CCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 44555555320 123333333343333 455666666666555544443321 1112234666665554422
Q ss_pred --cccccccccEEecccCCCcccccccc-------cccCccccEEEcccccc
Q 035500 142 --MVGRFMHLNTLSLDFCSSLASLHEDC-------FSCMPYLMCLSMCETRI 184 (606)
Q Consensus 142 --~~~~~~~l~tl~l~~~~~~~~~~~~~-------~~~~p~l~~l~~~~~~~ 184 (606)
.+..-+.|..|.|+ ++++..+...+ ...-|.|..|.+..+..
T Consensus 93 ~~aL~~n~sL~~L~l~-~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKAD-NQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHHTTTTCCCSEEECC-CCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCcCCEEECC-CCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence 12233558888888 77776664332 23367888888866644
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.66 E-value=18 Score=35.48 Aligned_cols=136 Identities=10% Similarity=0.066 Sum_probs=83.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-----------CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-----------GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVR 508 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-----------g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIk 508 (606)
..-+++++ ...++++|+.++ ++|...+. ........ -..|..++|+. + .++. +.++.+.
T Consensus 39 ~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~----ip~v~~vafs~-d--~l~v-~~~~~l~ 108 (381)
T d1xipa_ 39 LQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE----IPDVIFVCFHG-D--QVLV-STRNALY 108 (381)
T ss_dssp CBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE----CTTEEEEEEET-T--EEEE-EESSEEE
T ss_pred cceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC----CCCeEEEEeeC-C--EEEE-EeCCCEE
Confidence 44578888 556888888886 66776211 11111111 22588899974 2 3433 4556788
Q ss_pred EEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE------EcCCCCCCeEE
Q 035500 509 LFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQL------FTDMHREPINV 582 (606)
Q Consensus 509 lWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~------l~~gH~~~I~s 582 (606)
.++...... ....-....++.++.++|. .++....++.+.++++..++.... +.+ ++.+.+
T Consensus 109 ~~~~~~l~~---------~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~--~~~~~~ 175 (381)
T d1xipa_ 109 SLDLEELSE---------FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDV--TNSQLA 175 (381)
T ss_dssp EEESSSTTC---------EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEE--CSSEEE
T ss_pred EEEeecccc---------ccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEe--cCCceE
Confidence 888776321 1111112455788888764 566677789999999998865332 222 467899
Q ss_pred EEEeCCCCeEEEEEeCC
Q 035500 583 AKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~D 599 (606)
++|++.|..+ +++..+
T Consensus 176 v~ws~kgkq~-v~~~g~ 191 (381)
T d1xipa_ 176 VLLKDRSFQS-FAWRNG 191 (381)
T ss_dssp EEETTSCEEE-EEEETT
T ss_pred EEEeCCcEEE-EEeCCC
Confidence 9999888765 455443
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=81.28 E-value=20 Score=34.51 Aligned_cols=148 Identities=9% Similarity=0.000 Sum_probs=80.2
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEE-Ee-----ccCCCCCEEEEEEeeCCCCEEEEEECCC----eEE
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACY-IP-----SIGGTNSVLGLCWLKKYPSKLVAGSDSG----CVR 508 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~-~~-----~~gH~~~V~~L~fsp~~~~~LaSgS~Dg----tIk 508 (606)
++..|+++|++++++.+|+..|-|..-+ .+-.... +. ...+...+.+|+++|.++..++.+..+. ...
T Consensus 13 ~~~~i~~~P~~~~~~ya~~~~gGv~~S~--dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~~g 90 (427)
T d2ebsa1 13 YITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 90 (427)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEEEE--CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcCcc
Confidence 4889999999999999999876554332 2221111 10 0123346889999998777777665321 123
Q ss_pred EEeCCCCCCCcccccCCcceEEee----------cCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcC---
Q 035500 509 LFDLNHIPPKVADARGNSSVATYY----------DFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTD--- 574 (606)
Q Consensus 509 lWDl~~~~~~~~~l~~~~~i~t~~----------~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~--- 574 (606)
+|--..+. ....... ....+..|.++|.. +.+..++.++-|.. ....++.-.....
T Consensus 91 i~~S~DgG---------~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~tW~~~~~~~~ 160 (427)
T d2ebsa1 91 FYVSEDRG---------QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPD 160 (427)
T ss_dssp EEEESSTT---------SEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSSCEECTTSSC
T ss_pred EEEeCCCC---------ccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCceeeecccCcc
Confidence 45333221 1111111 11235678889975 56666665544321 3334443222210
Q ss_pred --CCCCCeEEEEEeCCCCe-EEEEEeC
Q 035500 575 --MHREPINVAKFSHHSPL-CLLLLHL 598 (606)
Q Consensus 575 --gH~~~I~sV~fsP~g~~-LLaTgS~ 598 (606)
.....+..+.++|..+. +++++..
T Consensus 161 ~~~~~~~~~~i~~~p~~~~~~y~~~~~ 187 (427)
T d2ebsa1 161 AFTNGIGYTSVIFDPERNGTIYASATA 187 (427)
T ss_dssp CCCSSSCEEEEEECTTSTTCEEEEESS
T ss_pred cccCCccceEEEecccccceeeeeeee
Confidence 12345788999987654 4444443
|