Citrus Sinensis ID: 035540

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MLSLQHKLVVAQFLVTALVLTSINLITANGSVCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNECG
Secondary Structure (PSIPRED)
ccEEcccccEEEEEEEccEEEEEEEccccccEEEEEEEEcccccccccccccEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHHccccccccccccccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEcccccEEEEEccccccccEEEEEEEEccccccccccccccEEEcccccEEEEEEccccccccHHHHHHHHHHHHHcccccHHccccccccccEEEEEEEccccEEcccccccc
Coil and Loop (DISEMBL)
MLSLQHKLVVAQFLVTALVLTSINLITANGSVCYVKIYLtaksppqpnselHLEIEKCTSHCIAVrkfsrffkddnvNKEVEVLMNSLNlhfmgntsiledkkkksyTIAQYNSSYHQARHLNECG
Flexible Loop (DISEMBL)
MLSLQHKLVVAQFLVTALVLTSINLITANGSVCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYnssyhqarHLNECG
Low Complexity Region (SEG)
MLSLQHKLVVAQFLVTALVLTSINLITANGSVCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNECG
Disordered region (IsUnstruct)
*****HKLVVAQFLVTALVLTSINLITANGSVCYVKIYLTA*********LHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILED****SYTIAQ***************
Disordered Region (DISOPRED)
********VVAQFLVTALVLTSINLITANGSVCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNE**
Disordered Region (DISEMBL)
MLSLQHKLVVAQFLVTALVLTSINLITANGSVCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNECG
Disordered Region (DISPRO)
**SLQHKLVVAQFLVTALVLTSINLITANGSVCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARH*****
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSLQHKLVVAQFLVTALVLTSINLITANGSVCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNECG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
255573971	210	Heme-binding protein, putative [Ricinus	0.880	0.528	0.517	2e-23
225425621	212	PREDICTED: uncharacterized protein LOC10	0.888	0.528	0.466	3e-21
224107803	221	predicted protein [Populus trichocarpa]	0.849	0.484	0.508	2e-20
351720967	209	uncharacterized protein LOC100500604 [Gl	0.809	0.488	0.451	1e-14
449532372	188	PREDICTED: heme-binding protein 2-like,	0.849	0.569	0.417	4e-14
449435406	237	PREDICTED: heme-binding protein 2-like [	0.841	0.447	0.421	5e-14
255540593	230	Heme-binding protein, putative [Ricinus	0.849	0.465	0.423	2e-11
115435526	214	Os01g0235300 [Oryza sativa Japonica Grou	0.841	0.495	0.401	2e-11
224119478	194	predicted protein [Populus trichocarpa]	0.873	0.567	0.388	2e-10
146454568	170	SOUL-like protein [Sonneratia alba] gi|2	0.777	0.576	0.405	2e-10

>gi|255573971|ref|XP_002527903.1| Heme-binding protein, putative [Ricinus communis] gi|223532678|gb|EEF34460.1| Heme-binding protein, putative [Ricinus communis]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 80/114 (70%), Gaps = 3/114 (2%)

Query: 11  AQFLVTALVLTSINLITANGSVCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSR 70
           AQ  +TA VLTSI + ++  +V YV+++L   +PPQPN EL+L+  K  + CIAVR FS 
Sbjct: 84  AQLPMTAPVLTSI-VPSSTATVHYVRLFLNKSNPPQPNPELNLQFTKWRAQCIAVRNFSG 142

Query: 71  FFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNE 124
           F +DDNV KE+E L+ SL  H  GNT+++ D    SYTIAQYNSS++Q+R  NE
Sbjct: 143 FAEDDNVKKEMEGLVASLTKHSTGNTAVIND--TSSYTIAQYNSSHYQSRRYNE 194

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425621|ref|XP_002266261.1| PREDICTED: uncharacterized protein LOC100250014 [Vitis vinifera] gi|297739097|emb|CBI28586.3| unnamed protein product [Vitis vinifera]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 78/118 (66%), Gaps = 6/118 (5%)

Query: 11  AQFLVTALVLTSINLITANGSVCYVKIYLTAK---SPPQPNSELHLEIEKCTSHCIAVRK 67
           +QF +TA VLTS+   +A GS   V+ + + K   SPPQP  EL+L+ +K  SHC+AVR 
Sbjct: 79  SQFAITAPVLTSVT-PSALGSEYTVRFFFSPKYEESPPQPYPELNLQFDKWRSHCVAVRV 137

Query: 68  FSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNEC 125
           F  F KDD ++KE++ L  SL+ +  G +++LE+  K SYTIAQYN+SYH    +NE 
Sbjct: 138 FPGFAKDDTISKEIKALETSLDDYLFGKSAVLEE--KNSYTIAQYNASYHPTGRVNEV 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107803|ref|XP_002314606.1| predicted protein [Populus trichocarpa] gi|222863646|gb|EEF00777.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 77/116 (66%), Gaps = 9/116 (7%)

Query: 12  QFLVTALVLTSINLITANGSVCYVKIYLTA---KSPPQPNSELHLEIEKCTSHCIAVRKF 68
           Q  +TA VLT+I     +GS  +VK+ L+A    +PPQPNSEL L++EK  + CIA+RKF
Sbjct: 88  QLAMTAPVLTTITE-APHGSSFFVKMSLSAYYEGTPPQPNSELDLQLEKWRAKCIAIRKF 146

Query: 69  SRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNE 124
           S F +DDN+ +EVE L  SLN H+ G    LE+  K SYTIAQYN+S H +   NE
Sbjct: 147 SGFARDDNIGEEVEALGTSLNEHWNG---TLEN--KSSYTIAQYNASNHLSGRFNE 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720967|ref|NP_001236682.1| uncharacterized protein LOC100500604 [Glycine max] gi|255630738|gb|ACU15730.1| unknown [Glycine max]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 11/113 (9%)

Query: 16  TALVLTSINLITANGSVCYVKIYLTA---KSPPQPNSELHLEIEKCTSHCIAVRKFSRFF 72
           TA VLTS+   +  G    V+++ +      PPQPN EL L IEK  + CIAVRKF+ + 
Sbjct: 91  TAPVLTSVPS-SPPGDDYIVRMFASTHFQGKPPQPNPELKLRIEKWKTQCIAVRKFTGYA 149

Query: 73  KDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQ-ARHLNE 124
           KDDN+NKE+E L+ +LN     N++ ++D     YTIA+YN+S H  A  LNE
Sbjct: 150 KDDNINKEIEALVTTLN----KNSATIQD--TSFYTIAKYNASSHNTADRLNE 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532372|ref|XP_004173155.1| PREDICTED: heme-binding protein 2-like, partial [Cucumis sativus]

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 8/115 (6%)

Query: 13  FLVTALVLTSINLITANGS--VCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSR 70
           FL T+ V T+I  +T      V Y    + A++PP PNSEL++  EK  ++C+AVR+F  
Sbjct: 65  FLFTSPVTTTIMTLTREPERLVRYYLPIMNAENPPLPNSELNVHFEKWRNNCLAVRRFPG 124

Query: 71  FFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNEC 125
           F KDDN+NKE++ L +SL+ +   + ++ E      YTIAQYNSS      LNE 
Sbjct: 125 FAKDDNINKEIDALKSSLSKYLPESAAVSE------YTIAQYNSSRRLLGRLNEV 173

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435406|ref|XP_004135486.1| PREDICTED: heme-binding protein 2-like [Cucumis sativus]

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 8/114 (7%)

Query: 13  FLVTALVLTSINLITANGS--VCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSR 70
           FL T+ V T+I  +T      V Y    + A++PP PNSEL++  EK  ++C+AVR+F  
Sbjct: 114 FLFTSPVTTTIMTLTREPERLVRYYLPIMNAENPPLPNSELNVHFEKWRNNCLAVRRFPG 173

Query: 71  FFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNE 124
           F KDDN+NKE++ L +SL+ +   + ++ E      YTIAQYNSS      LNE
Sbjct: 174 FAKDDNINKEIDALKSSLSKYLPESAAVSE------YTIAQYNSSRRLLGRLNE 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540593|ref|XP_002511361.1| Heme-binding protein, putative [Ricinus communis] gi|223550476|gb|EEF51963.1| Heme-binding protein, putative [Ricinus communis]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 64/118 (54%), Gaps = 11/118 (9%)

Query: 15  VTALVLTSINLITANG----SVCYVKIYLTAK---SPPQPNSELHLEIEKCTSHCIAVRK 67
           +TA V+TSI  +   G    S  YV  YL  K    PP P  ELHL+     S CIAVR 
Sbjct: 97  MTAPVVTSI--VPGAGPFQSSAYYVLFYLPLKFQADPPVPLPELHLKPYVQGSRCIAVRT 154

Query: 68  FSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNEC 125
           FS F KDDN+ KE + L  SL+     N + LE   K +Y+IAQY++ +H    +NE 
Sbjct: 155 FSGFAKDDNIVKEAKKLAASLSRSPWANRTSLES--KSAYSIAQYDAPFHFIGRVNEV 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115435526|ref|NP_001042521.1| Os01g0235300 [Oryza sativa Japonica Group] gi|7339697|dbj|BAA92902.1| unknown protein [Oryza sativa Japonica Group] gi|8468007|dbj|BAA96608.1| unknown protein [Oryza sativa Japonica Group] gi|113532052|dbj|BAF04435.1| Os01g0235300 [Oryza sativa Japonica Group] gi|125525071|gb|EAY73185.1| hypothetical protein OsI_01058 [Oryza sativa Indica Group] gi|125569659|gb|EAZ11174.1| hypothetical protein OsJ_01024 [Oryza sativa Japonica Group] gi|215736875|dbj|BAG95804.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737684|dbj|BAG96814.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765477|dbj|BAG87174.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 11/117 (9%)

Query: 15  VTALVLTSINLITANG----SVCYVKIYLTAK---SPPQPNSELHLEIEKCTSHCIAVRK 67
           +T  +LTSI  +   G    S  +V++YL AK   SPP P  EL+L  ++  SHCIAVR 
Sbjct: 87  MTTPILTSI--VPGAGPLHSSAYFVRLYLPAKFQASPPVPLPELNLHPDRWPSHCIAVRS 144

Query: 68  FSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNE 124
           FS + +D+NV +E E L  SL+     N++      K +Y+IAQYN+ +     LNE
Sbjct: 145 FSGYARDNNVVEEAEKLALSLSRSPWANST--NYPSKSAYSIAQYNNPFRIIGRLNE 199

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119478|ref|XP_002318082.1| predicted protein [Populus trichocarpa] gi|222858755|gb|EEE96302.1| predicted protein [Populus trichocarpa]

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 64/121 (52%), Gaps = 11/121 (9%)

Query: 11  AQFLVTALVLTSINLITANG----SVCYVKIYLTAK---SPPQPNSELHLEIEKCTSHCI 63
           ++  VT  V+TSI  +   G    S   V+ YL  K    PP P  ELHL+     SHC+
Sbjct: 57  SRIAVTVPVVTSI--VPGAGPFRSSAYVVRFYLPVKLQADPPVPLDELHLKPYAWNSHCV 114

Query: 64  AVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLN 123
           AVRKFS + KD+N+ +E + L +SL+     N S  E     SY+IAQY+S +      N
Sbjct: 115 AVRKFSGYAKDENIAEEAKRLADSLSRSPWANLSSTE--SNYSYSIAQYDSPFQFIGRTN 172

Query: 124 E 124
           E
Sbjct: 173 E 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454568|gb|ABQ41950.1| SOUL-like protein [Sonneratia alba] gi|241865392|gb|ACS68728.1| SOUL-like protein [Sonneratia alba]

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 8/106 (7%)

Query: 14  LVTALVLTSINLITANGSVCYVKIYLTAK---SPPQPNSELHLEIEKCTSHCIAVRKFSR 70
           +VT++V  +  L ++  SV +   YL AK   +PP P  ELHL+     SHC+A+RKFS 
Sbjct: 70  VVTSIVPEAGPLHSSAYSVLF---YLPAKFQETPPTPLPELHLKAYIWASHCVAIRKFSG 126

Query: 71  FFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSY 116
           F KDDN+ +E E L  SL+     N +    K   +Y+IAQY+S +
Sbjct: 127 FAKDDNIVREAEKLAFSLSKSTWANAT--SAKSGYAYSIAQYSSPF 170

Source: Sonneratia alba

Species: Sonneratia alba

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2020307	232	HBP1 "AT1G17100" [Arabidopsis	0.849	0.461	0.308	1.2e-08

TAIR|locus:2020307 HBP1 "AT1G17100" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 37/120 (30%), Positives = 63/120 (52%)

Query:    15 VTALVLTSINLITANGSVCY----VKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSR 70
             +TA V++ ++   ++G  C     V  Y+  K+ P P    +L I+K  S  +AVR+FS 
Sbjct:   107 MTAPVISQVS--PSDGPFCESSFTVSFYVPKKNQPDPAPSENLHIQKWNSRYVAVRQFSG 164

Query:    71 FFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKK------KSYTIAQYNSSYHQARHLNE 124
             F  DD++ ++   L +SL      N +I + K+        +YT+AQYNS +  +  +NE
Sbjct:   165 FVSDDSIGEQAAALDSSLKGTAWAN-AIAKSKEDGGVGSDSAYTVAQYNSPFEFSGRVNE 223


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.131   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126       126   0.00091  102 3  11 22  0.50    30
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  553 (59 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.10u 0.18s 16.28t   Elapsed:  00:00:00
  Total cpu time:  16.10u 0.18s 16.28t   Elapsed:  00:00:00
  Start:  Thu May  9 20:32:59 2013   End:  Thu May  9 20:32:59 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
pfam04832	174	pfam04832, SOUL, SOUL heme-binding protein	8e-06

>gnl|CDD|218284 pfam04832, SOUL, SOUL heme-binding protein

 Score = 42.2 bits (100), Expect = 8e-06
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 40  TAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSIL 99
            A++ P P     + I +  +  +AV +FS    +++V ++   L   L         + 
Sbjct: 95  QAETLPAPLDP-DVRIREVPARTVAVIRFSGRASEEDVAEKAAELRAWL-----EADGL- 147

Query: 100 EDKKKKSYTIAQYNS 114
             K +    +A YN 
Sbjct: 148 --KPRGEPFLAGYNP 160

This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologues. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PF04832	176	SOUL: SOUL heme-binding protein; InterPro: IPR0069	100.0
PRK10016	156	DNA gyrase inhibitor; Provisional	93.2
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	91.85
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	88.37
PRK10016	156	DNA gyrase inhibitor; Provisional	86.34
smart00871	158	AraC_E_bind Bacterial transcription activator, eff	85.26
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	84.57
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	82.76

>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []

Probab=100.00  E-value=2e-36  Score=225.63  Aligned_cols=114  Identities=23%  Similarity=0.349  Sum_probs=86.2

Q ss_pred             ccccCCCCceeceecceeEEEeecC---CCCceEEEEEEec---C-CCCCCCCCCCCEEEEEeCCeEEEEEeecCccCch
Q 035540            3 SLQHKLVVAQFLVTALVLTSINLIT---ANGSVCYVKIYLT---A-KSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDD   75 (126)
Q Consensus         3 ~~G~N~~~~kI~MTaPV~~~~~~p~---~~~~~~tmsF~lP---~-~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~   75 (126)
                      ++|+|+++++|+||+||++++. +.   .+.+.|+|+||||   | ++||.|+ |++|+|+++|++++||++||||+++.
T Consensus        51 i~G~N~~~~ki~mT~PV~~~~~-~~~~~~~~~~~t~~f~lP~~~~~~~~P~P~-d~~V~i~~~p~~~~~v~~F~G~~~~~  128 (176)
T PF04832_consen   51 IFGKNSAGEKIAMTAPVLTQVI-PMTAESCEKEYTMSFFLPSEYQAENPPKPT-DPDVFIEEVPERTVYVRRFSGFATDE  128 (176)
T ss_dssp             HCT-CTT------BS-EEEEEE-ETTTTTCECEEEEEEE--HHHC-TS---BS-STTEEEEEC-SEEEEEEEECS--SHH
T ss_pred             HhcCCcccceeeccCCEEEEEE-cCCCcccCCcEEEEEEcCcccccccCCCCC-CCeEEEEEecCcEEEEEEECCcCCHH
Confidence            5899999999999999999984 32   2567899999999   6 8999998 78999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCCCC-CCcccCCC
Q 035540           76 NVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQ-ARHLNECG  126 (126)
Q Consensus        76 ~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~~l-~~RrNEV~  126 (126)
                      ++.+++++|+++|.++|+.        +.+.+++|+||+||++ ++|||||.
T Consensus       129 ~~~~~~~~L~~~L~~~g~~--------~~~~~~~a~Yd~P~~~~~~R~NEV~  172 (176)
T PF04832_consen  129 KIQEEAKKLRAALKKDGLK--------DKGYYYVAGYDPPFTPPFNRRNEVW  172 (176)
T ss_dssp             HHHHHHHHHHHHCCCTTHH--------CCCEEEEEESSSS-SSSSSSCEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCC--------cCCCeEEEEcCCCCCCccCcceEEE
Confidence            9999999999999998863        1378999999999876 99999983

It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=93.20  E-value=0.51  Score=33.78  Aligned_cols=54  Identities=20%  Similarity=0.255  Sum_probs=43.1

Q ss_pred             CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCC
Q 035540           52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSS  115 (126)
Q Consensus        52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P  115 (126)
                      +|+|+++|+.++|..|.-|-..+ .+.+-..+|.+++.++|+..         +.++.-.||.|
T Consensus         2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~~---------~~~~~i~~D~p   55 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIVP---------KEWVAVYYDNP   55 (156)
T ss_pred             ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCCC---------CcEEEEECCCC
Confidence            58999999999999999997643 47788899999999986521         22566788888

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=91.85  E-value=0.86  Score=33.85  Aligned_cols=56  Identities=9%  Similarity=-0.040  Sum_probs=45.2

Q ss_pred             CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCC
Q 035540           52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSY  116 (126)
Q Consensus        52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~  116 (126)
                      +|.|+++|+..||..+=-|  ....+.+-.++|.+|..++|+-..       ++..+--.||+|=
T Consensus         2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p~-------~S~~~gI~~ddP~   57 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLPE-------QSETLGIYQDDPD   57 (154)
T ss_pred             CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCCC-------CceEEEEecCCCC
Confidence            6999999999999999999  788999999999999999876331       1444445667665

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=88.37  E-value=0.91  Score=30.74  Aligned_cols=58  Identities=12%  Similarity=0.110  Sum_probs=44.7

Q ss_pred             CEEEEEeCCeEEEEEeecCccCchh-HHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCC
Q 035540           52 HLEIEKCTSHCIAVRKFSRFFKDDN-VNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSY  116 (126)
Q Consensus        52 ~V~i~~~p~~~vaV~~FsG~~~~~~-~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~  116 (126)
                      +|+|+++|+++++..+..|-..+.. +.+..++|.+++...+...    .   ...++...||.|-
T Consensus         2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~----~---~~~~~~i~~~~~~   60 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLST----D---PGPIIGIYYDNPN   60 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCC----S---SSSEEEEEEECCT
T ss_pred             CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhccc----C---CCcceeEEecccc
Confidence            5899999999999999999888877 8999999999999865421    1   1444555666653

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=86.34  E-value=8.9  Score=27.25  Aligned_cols=60  Identities=13%  Similarity=0.005  Sum_probs=43.3

Q ss_pred             eEEEEEEecCCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchhHHHHHHH-HHHHhhcCcCC
Q 035540           32 VCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEV-LMNSLNLHFMG   94 (126)
Q Consensus        32 ~~tmsF~lP~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~-L~~~L~~~~~~   94 (126)
                      .+-+..-+|.+....+. +..+.+.++|+.++||..+-|-  -+.+..-... +.+||..+|+.
T Consensus        64 R~d~~i~v~~~~~~~~~-~~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~  124 (156)
T PRK10016         64 RCDTVVTVPDDFVLPEN-SEGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQ  124 (156)
T ss_pred             eeeEEEEeCCCcccCCC-CCCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCc
Confidence            37788889943322222 2369999999999999999995  4456665655 78999988763

>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain

Probab=85.26  E-value=5.7  Score=26.79  Aligned_cols=59  Identities=7%  Similarity=-0.021  Sum_probs=41.9

Q ss_pred             EEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCC
Q 035540           53 LEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSY  116 (126)
Q Consensus        53 V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~  116 (126)
                      ++|+++|+.+++..++.|-..+..+.+..++|.+++...+.....  .   .+..+...|+.|.
T Consensus         2 ~~i~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~   60 (158)
T smart00871        2 VRIVELPAFKVAGLRHRGPYEEEKIPELWQRLIAWAKELGLLPIG--P---SGPPYGVYYDDPD   60 (158)
T ss_pred             CEEEEcCCceEEEEEeecCcccccHHHHHHHHHHHHHHcCCCCCC--C---CccEEEEECCCCC
Confidence            688999999999999999988656788888888888776542210  0   1344555666654

This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=84.57  E-value=9.8  Score=25.50  Aligned_cols=40  Identities=18%  Similarity=0.098  Sum_probs=36.5

Q ss_pred             CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHH-HhhcCcC
Q 035540           52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMN-SLNLHFM   93 (126)
Q Consensus        52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~-~L~~~~~   93 (126)
                      .+....+|+.++|+..|.|-.  +.+.+-...|.. ||.++|+
T Consensus        84 ~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~  124 (155)
T PF06445_consen   84 GMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGY  124 (155)
T ss_dssp             TSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTC
T ss_pred             eEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCC
Confidence            689999999999999999977  788888999999 9999876

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=82.76  E-value=2.4  Score=31.48  Aligned_cols=71  Identities=13%  Similarity=0.118  Sum_probs=44.9

Q ss_pred             eEEEEEEecCCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchhHHHH-HHHHHHHhhcCcCCCcceecccCCCceEEE
Q 035540           32 VCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKE-VEVLMNSLNLHFMGNTSILEDKKKKSYTIA  110 (126)
Q Consensus        32 ~~tmsF~lP~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~-~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A  110 (126)
                      .|-..-.+|+   +.+.++..|..-++|+.++||.+|.|-.  +++.+- .....+||.++|..      .  .+.+.+.
T Consensus        65 R~D~cv~v~~---~~~~n~~~v~~~~i~GG~YAV~r~~~~~--d~~~~aw~~if~ewlp~Sg~~------~--~d~P~~e  131 (154)
T COG3449          65 RYDACVVVPE---PIPENSEGVQLGEIPGGLYAVARFRGTA--DDLAKAWGYIFGEWLPASGYE------P--RDRPILE  131 (154)
T ss_pred             eeeEEEEcCC---ccCCCCCceeEeeecCCceEEEEEeccH--HHHHHHHHHHHhhhccccCcc------c--CCCchHH
Confidence            4455555552   3333355799999999999999999965  334443 34556777776532      2  2566666


Q ss_pred             eeCCC
Q 035540          111 QYNSS  115 (126)
Q Consensus       111 ~Yn~P  115 (126)
                      +|=+.
T Consensus       132 ~y~n~  136 (154)
T COG3449         132 RYLNF  136 (154)
T ss_pred             HHhcc
Confidence            76433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	9e-05
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	1e-04

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 3r85_E Length = 212

 Score = 39.1 bits (90), Expect = 9e-05
 Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 13/114 (11%)

Query: 16  TALVLTSINLITANGSVCYVKIYL-----TAKSPPQPNSELHLEIEKCTSHCIAVRKFSR 70
           TA V + +   +   S   + I L         PP+P       IE      + VR F  
Sbjct: 89  TAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDV-FIEDRAEMTVFVRSFDG 147

Query: 71  FFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNE 124
           F       +++  L + L           +   +K Y  A YNS        NE
Sbjct: 148 FSSAQKNQEQLLTLASILREDG-------KVFDEKVYYTAGYNSPVKLLNRNNE 194

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Length = 227

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 13/114 (11%)

Query: 16  TALVLTSINLITANGSVCYVKIYL-----TAKSPPQPNSELHLEIEKCTSHCIAVRKFSR 70
           TA V + +   +   S   + I L         PP+P       IE      + VR F  
Sbjct: 108 TAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDV-FIEDRAEMTVFVRSFDG 166

Query: 71  FFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNE 124
           F       +++  L + L           +   +K Y  A YNS        NE
Sbjct: 167 FSSAQKNQEQLLTLASILREDG-------KVFDEKVYYTAGYNSPVKLLNRNNE 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	100.0
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	100.0
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	100.0
1jyh_A	157	DNA gyrase inhibitory protein; structural genomics	95.7
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	95.03
1r8e_A	278	Multidrug-efflux transporter regulator; protein-DN	86.74
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	82.34
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	80.97
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	80.42

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E

Probab=100.00  E-value=2.1e-38  Score=242.76  Aligned_cols=115  Identities=22%  Similarity=0.232  Sum_probs=104.3

Q ss_pred             ccccCCCCceeceecceeEEEeecCC---CCceEEEEEEec---CCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchh
Q 035540            3 SLQHKLVVAQFLVTALVLTSINLITA---NGSVCYVKIYLT---AKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDN   76 (126)
Q Consensus         3 ~~G~N~~~~kI~MTaPV~~~~~~p~~---~~~~~tmsF~lP---~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~   76 (126)
                      .+|+|..++||+||+||++++. |+.   +.+.|+|+||||   |++||.|+ |++|+|+++|+++|||++||||+++.+
T Consensus        76 I~G~N~~~~kI~MTaPV~t~~~-p~~~~~~~~~~tvsF~lP~~~q~~pP~P~-d~~V~i~~~p~~~vav~~F~G~~~~~~  153 (212)
T 3r8j_A           76 IQGKNEKEMKIKMTAPVTSYVE-PGSGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSSAQK  153 (212)
T ss_dssp             HTTCBTTCCCCCCBSCEEEEEE-CTTSTTSCEEEEEEEECCHHHHSSCCCBS-STTEEEEEECCEEEEEEEESSCCCHHH
T ss_pred             hhcCCCCCCccccccCEEEEEe-cCCCcccCceEEEEEEcChHHccCCCCCC-CCceEEEEeCCEEEEEEEeCCcCCHHH
Confidence            4899999999999999999987 654   467899999999   78999998 789999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCCCCCCcccCCC
Q 035540           77 VNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNECG  126 (126)
Q Consensus        77 ~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~~l~~RrNEV~  126 (126)
                      +.+++++|+++|.++|+.    +.   .+.|++|+|||||++|+|||||.
T Consensus       154 ~~~~~~~L~~~L~~~g~~----~~---~~~y~~A~Yd~P~t~~~RrNEVw  196 (212)
T 3r8j_A          154 NQEQLLTLASILREDGKV----FD---EKVYYTAGYNSPVKLLNRNNEVW  196 (212)
T ss_dssp             HHHHHHHHHHHHHHTTCC----BC---SSCEEEEESSSSSCCSSSCEEEE
T ss_pred             HHHHHHHHHHHHHhCCCc----cC---CCcEEEEEeCCCCCcCCceeEEE
Confidence            999999999999998752    21   26789999999999999999984

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=244.27  Aligned_cols=115  Identities=22%  Similarity=0.232  Sum_probs=101.2

Q ss_pred             ccccCCCCceeceecceeEEEeecCC---CCceEEEEEEec---CCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchh
Q 035540            3 SLQHKLVVAQFLVTALVLTSINLITA---NGSVCYVKIYLT---AKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDN   76 (126)
Q Consensus         3 ~~G~N~~~~kI~MTaPV~~~~~~p~~---~~~~~tmsF~lP---~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~   76 (126)
                      .+|+|..++||+||+||++++. |+.   +.+.|+|+||||   |++||.|+ |++|+|+++|+++|||++||||+++++
T Consensus        95 I~G~N~~~~kI~MTaPV~t~~~-p~~~~~~~~~~tvsF~lP~~~q~~pP~P~-D~~V~i~~~p~~~vaVr~FsG~~~~~~  172 (227)
T 4b0y_A           95 IQGKNEKEMKIKMTAPVTSYVE-PGSGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSSAQK  172 (227)
T ss_dssp             HHTCBTTCCCCCCBSCEEEEEE-CCC--CCCEEEEEEEECCGGGSSSCCCBS-SSSEEEEEECCEEEEEEEESSCCCHHH
T ss_pred             hhcCCCCCCccccccCEEEEEe-cCCCcccCceEEEEEEcChhhccCCCCCC-CCceEEEEeCCEEEEEEEecCcCCHHH
Confidence            4799999999999999999987 654   467899999999   88999998 789999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCCCCCCcccCCC
Q 035540           77 VNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNECG  126 (126)
Q Consensus        77 ~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~~l~~RrNEV~  126 (126)
                      +.+++++|+++|.++|+.    +.   .+.|++|+|||||++|+|||||.
T Consensus       173 ~~~~~~~L~~~L~~~g~~----~~---~~~y~~A~Yd~P~t~~~RrNEVw  215 (227)
T 4b0y_A          173 NQEQLLTLASILREDGKV----FD---EKVYYTAGYNSPVKLLNRNNEVW  215 (227)
T ss_dssp             HHHHHHHHHHHHHHHTCC----BC---SSCEEEEECC---CCCSSCEEEE
T ss_pred             HHHHHHHHHHHHHhCCCc----cC---CCcEEEEEeCCCCCcCCceeEEE
Confidence            999999999999998752    21   26789999999999999999984

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A

Probab=100.00  E-value=9e-39  Score=241.78  Aligned_cols=115  Identities=16%  Similarity=0.100  Sum_probs=103.1

Q ss_pred             ccccCCCCceeceecceeEEEeecCC---CCceEEEEEEec---CCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchh
Q 035540            3 SLQHKLVVAQFLVTALVLTSINLITA---NGSVCYVKIYLT---AKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDN   76 (126)
Q Consensus         3 ~~G~N~~~~kI~MTaPV~~~~~~p~~---~~~~~tmsF~lP---~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~   76 (126)
                      .+|+|..++||+||+||++++. |+.   +.+.|+|+|+||   |.+||+|+ |++|+|+++|++++||++||||+++.+
T Consensus        71 I~G~N~~~~kI~MTaPV~~~~~-p~~~~~~~~~~tvsF~lP~~~~~~pP~P~-d~~V~i~~~p~~~vav~~F~G~~~~~~  148 (195)
T 2gov_A           71 VGGTNDKGVGMGMTVPVSFAVF-PNEDGSLQKKLKVWFRIPNQFQGSPPAPS-DESVKIEEREGITVYSTQFGGYAKEAD  148 (195)
T ss_dssp             HHTCBTTCCCCCCCCCEEEEEE-ECTTSCEEEEEEEEECCCHHHHHSCCCBC-SSSCEEEECCSCEEEEEEEESCCCHHH
T ss_pred             hccCCCCCCCcccccCEEEEEc-CCCCCCcCceEEEEEEcchhcccCCCCCC-CCceEEEEeCCeEEEEEEECCccCHHH
Confidence            4799999999999999999876 653   346899999999   67899998 789999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCCCCCCcccCCC
Q 035540           77 VNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNECG  126 (126)
Q Consensus        77 ~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~~l~~RrNEV~  126 (126)
                      +.+++++|+++|.++|+.    +.   .+.|++|+|||||++|+|||||.
T Consensus       149 ~~~~~~~L~~~L~~~g~~----~~---~~~~~~a~Yn~P~~~~~RrNEV~  191 (195)
T 2gov_A          149 YVAHATQLRTTLEGTPAT----YQ---GDVYYCAGYDPPMKPYGRRNEVW  191 (195)
T ss_dssp             HHHHHHHHHHHTTTSSCC----EE---EEEEEEEESSCCSSSSCCEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCc----cc---CCcEEEEEeCCCCCcCCceeEEE
Confidence            999999999999998752    21   26789999999999999999984

>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3

Probab=95.70  E-value=0.069  Score=35.22  Aligned_cols=59  Identities=14%  Similarity=-0.010  Sum_probs=42.5

Q ss_pred             eEEEEEEecCCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchhHHHHHHHHH-HHhhcCcC
Q 035540           32 VCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLM-NSLNLHFM   93 (126)
Q Consensus        32 ~~tmsF~lP~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~-~~L~~~~~   93 (126)
                      .|.+.+.+|....++|. +..+.+.++|+.++||..|.|-.  +.+.+-..+|. +||.++|+
T Consensus        64 ~~~~~~~v~~~~~~~~~-~~~~~~~~ip~g~ya~~~~~G~~--~~~~~~~~~l~~~wl~~~g~  123 (157)
T 1jyh_A           64 RCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVG--DDFAKPWYQFFNSLLQDSAY  123 (157)
T ss_dssp             EEEEEEEECTTCCCCSS-CTTCEEEEECCEEEEEEEEEECS--SCCHHHHHHHHHHHTTCSSE
T ss_pred             eEEEEEEecCccccCCC-CCCeEEEEeCCCcEEEEEEEeCH--HHHHHHHHHHHHHhhcccCC
Confidence            56777777733222132 34799999999999999999986  34667777775 99988764

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=95.03  E-value=0.23  Score=33.96  Aligned_cols=74  Identities=7%  Similarity=-0.057  Sum_probs=50.5

Q ss_pred             ceEEEEEEec-CCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcCCCcceecccCCCceEE
Q 035540           31 SVCYVKIYLT-AKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTI  109 (126)
Q Consensus        31 ~~~tmsF~lP-~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~  109 (126)
                      +.+.+.+-+| ....+ +  +..|.+.++|+.++||.++.|-..+  +.+-..+|.+||.++|+...        +..+-
T Consensus        67 ~~~~~~~~~~v~~~~~-~--~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~~~--------~~~~E  133 (158)
T 3e0h_A           67 GTFEVEFGFPVEGGVE-G--SGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFDLS--------GEAYE  133 (158)
T ss_dssp             SCEEEEEEEECCSCCC-C--BTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCCEE--------EEEEE
T ss_pred             cceEEEEEEEeCCCCC-C--CCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCCcC--------CCEEE
Confidence            4455666666 22222 2  2379999999999999999997653  88888899999999876321        23333


Q ss_pred             EeeCCCCC
Q 035540          110 AQYNSSYH  117 (126)
Q Consensus       110 A~Yn~P~~  117 (126)
                      -.+|+|..
T Consensus       134 ~Y~~~p~~  141 (158)
T 3e0h_A          134 IYLDNPAE  141 (158)
T ss_dssp             EECSCTTS
T ss_pred             EEeCCCCC
Confidence            34577764

>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*

Probab=86.74  E-value=4  Score=30.34  Aligned_cols=42  Identities=10%  Similarity=0.026  Sum_probs=34.9

Q ss_pred             CCEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcCC
Q 035540           51 LHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMG   94 (126)
Q Consensus        51 ~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~~   94 (126)
                      ..|.+.++|+.++|+..+.|-.  +++.+-...|.+||.++|+.
T Consensus       205 ~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~  246 (278)
T 1r8e_A          205 PDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT  246 (278)
T ss_dssp             TTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC
T ss_pred             CCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCc
Confidence            3689999999999999999955  45677778888999998763

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=82.34  E-value=4.8  Score=29.00  Aligned_cols=42  Identities=10%  Similarity=-0.112  Sum_probs=35.6

Q ss_pred             CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHh------hcCcC
Q 035540           52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSL------NLHFM   93 (126)
Q Consensus        52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L------~~~~~   93 (126)
                      +|.|+++|++.++.++..|-..+..+.+...+|..++      .+.|+
T Consensus        24 ~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~   71 (211)
T 3b49_A           24 KPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGET   71 (211)
T ss_dssp             SCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred             CcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            6999999999999999888655557888889999998      77765

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=80.97  E-value=7.1  Score=28.03  Aligned_cols=41  Identities=5%  Similarity=-0.045  Sum_probs=35.1

Q ss_pred             CCEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcC
Q 035540           51 LHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFM   93 (126)
Q Consensus        51 ~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~   93 (126)
                      ..|.+.++|+.++|+.++-|-..  ++.+-...|.+||.++|+
T Consensus       136 ~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~wl~~~g~  176 (211)
T 3b49_A          136 SRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQFMETEGL  176 (211)
T ss_dssp             TTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHHHHHHTC
T ss_pred             ccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHHHHHCCC
Confidence            37999999999999999999765  466777888899999886

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=80.42  E-value=5.3  Score=26.81  Aligned_cols=42  Identities=5%  Similarity=-0.064  Sum_probs=31.6

Q ss_pred             CEEEEEeCCeEEEEEeecCccCc--hhHHHHHHHHHHHhhcCcC
Q 035540           52 HLEIEKCTSHCIAVRKFSRFFKD--DNVNKEVEVLMNSLNLHFM   93 (126)
Q Consensus        52 ~V~i~~~p~~~vaV~~FsG~~~~--~~~~~~~~~L~~~L~~~~~   93 (126)
                      +|+|+++|+.+||..+..|-..+  ..+.+-..+|.+++...++
T Consensus         8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l   51 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGK   51 (158)
T ss_dssp             CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            69999999999999999987532  1233455678888887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d2gova1	184	d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (	2e-05

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 13/118 (11%)

Query: 12  QFLVTALVLTSI-----NLITANGSVCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVR 66
              +T  V  ++       +     V +        SPP P+ E  ++IE+     +   
Sbjct: 69  GMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE-SVKIEEREGITVYST 127

Query: 67  KFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNE 124
           +F  + K+ +       L  +L              +   Y  A Y+         NE
Sbjct: 128 QFGGYAKEADYVAHATQLRTTLEGTPA-------TYQGDVYYCAGYDPPMKPYGRRNE 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d2gova1	184	Heme-binding protein 1 {Mouse (Mus musculus) [TaxI	100.0
d1r8ea2	157	Multidrug-binding domain of transcription activato	92.75
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	89.68
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	89.41

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.3e-38  Score=233.65  Aligned_cols=115  Identities=16%  Similarity=0.100  Sum_probs=102.9

Q ss_pred             ccccCCCCceeceecceeEEEeecCC---CCceEEEEEEec---CCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchh
Q 035540            3 SLQHKLVVAQFLVTALVLTSINLITA---NGSVCYVKIYLT---AKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDN   76 (126)
Q Consensus         3 ~~G~N~~~~kI~MTaPV~~~~~~p~~---~~~~~tmsF~lP---~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~   76 (126)
                      .+|+|++++||+||+||++++. ++.   |.+.|+|+|+||   +++||.|+ |++|+|+++|++++||++|||++++++
T Consensus        60 I~G~N~~~~kI~MTaPV~~~~~-~~~~~~~~~~~~m~F~lP~~~~~~~P~P~-d~~V~i~~~p~~~vav~~F~G~~~~~~  137 (184)
T d2gova1          60 VGGTNDKGVGMGMTVPVSFAVF-PNEDGSLQKKLKVWFRIPNQFQGSPPAPS-DESVKIEEREGITVYSTQFGGYAKEAD  137 (184)
T ss_dssp             HHTCBTTCCCCCCCCCEEEEEE-ECTTSCEEEEEEEEECCCHHHHHSCCCBC-SSSCEEEECCSCEEEEEEEESCCCHHH
T ss_pred             eccCCCCCcccccccceEEEEe-cCCCCcccCcEEEEEEcchhhcccCCCCc-cccceeeccCcceEEEEEeCCcccHHH
Confidence            4799999999999999999987 554   456899999999   78899998 679999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCCCCCCcccCCC
Q 035540           77 VNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNECG  126 (126)
Q Consensus        77 ~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~~l~~RrNEV~  126 (126)
                      +.+++++|+++|.++|+.    +. +  +.|++|+||+||++|+|||||.
T Consensus       138 ~~~~~~~L~~~L~~~g~~----~~-~--~~~~~a~Yd~P~~p~~R~NEVw  180 (184)
T d2gova1         138 YVAHATQLRTTLEGTPAT----YQ-G--DVYYCAGYDPPMKPYGRRNEVW  180 (184)
T ss_dssp             HHHHHHHHHHHTTTSSCC----EE-E--EEEEEEESSCCSSSSCCEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCc----cc-C--CCEEEEEeCCCCCCCCcceeEE
Confidence            999999999999998763    21 1  4678899999999999999983

>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Multidrug-binding domain of transcription activator BmrR
domain: Multidrug-binding domain of transcription activator BmrR
species: Bacillus subtilis [TaxId: 1423]

Probab=92.75  E-value=0.33  Score=32.08  Aligned_cols=42  Identities=10%  Similarity=0.014  Sum_probs=36.9

Q ss_pred             CCEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcCC
Q 035540           51 LHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMG   94 (126)
Q Consensus        51 ~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~~   94 (126)
                      .++.+..+|+.++|+..|.|-..  ++.+-.++|.+||.++|+.
T Consensus        85 ~~~~~~~lp~G~ya~~~~~G~y~--~~~~~y~~l~~~~~~~g~~  126 (157)
T d1r8ea2          85 PDMEITTIPKGRYACIAYNFSPE--HYFLNLQKLIKYIADRQLT  126 (157)
T ss_dssp             TTSEEEEECSEEEEEEEEECCHH--HHHHHHHHHHHHHHHTTCC
T ss_pred             CCceEEecCCeEEEEEEEEECcc--chHHHHHHHHHHHHhcCcC
Confidence            47999999999999999999774  7788888999999998863

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=89.68  E-value=1.4  Score=27.81  Aligned_cols=58  Identities=12%  Similarity=-0.024  Sum_probs=41.2

Q ss_pred             eEEEEEEec-CCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchhHHHHHHHH-HHHhhcCcC
Q 035540           32 VCYVKIYLT-AKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVL-MNSLNLHFM   93 (126)
Q Consensus        32 ~~tmsF~lP-~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L-~~~L~~~~~   93 (126)
                      .+.+.+-++ ....|..  +..|.+.++|++++||..+.|-..  ++.+....| .+||.++|+
T Consensus        64 ~~~~~v~v~~~~~~~~~--~~~i~~~~lp~g~yA~~~~~G~~~--~~~~~~~~~~~~wl~~~gy  123 (155)
T d1jyha_          64 RCDTVVTVPGYFTLPEN--SEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAY  123 (155)
T ss_dssp             EEEEEEEECTTCCCCSS--CTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSE
T ss_pred             eEEEEEEcCCccccCcc--cceEEEEEECCccEEEEEEccChH--HHHHHHHHHHhhhhhhcCC
Confidence            577777777 3333333  236999999999999999999754  344444455 689999875

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=89.41  E-value=0.58  Score=29.87  Aligned_cols=41  Identities=20%  Similarity=0.198  Sum_probs=33.4

Q ss_pred             CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcC
Q 035540           52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFM   93 (126)
Q Consensus        52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~   93 (126)
                      +++|+++++.+||-.+..|-.. +.+.+-.++|.+++.+.++
T Consensus         2 ~~~I~~l~~~~V~g~r~~g~~~-e~i~~~w~~l~~~~~~~~~   42 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNI   42 (155)
T ss_dssp             CCEEEEECCEEEEEEEEESCHH-HHHHHHHHHHHHHHHHTTC
T ss_pred             CcEEEEECCEEEEEEEEEcCcH-HHHHHHHHHHHHHHHHhCC
Confidence            4789999999999999888643 3477788889999988765