Citrus Sinensis ID: 035602

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGHLYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERGAGGAFTGRSYRLNLSSSRPFFPRSLWSS
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccEccccccccccccccccc
Coil and Loop (DISEMBL)
arygvqlekstferRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALsaipmlwtpfLGVSLVFMLLYVWsrefptaqiSIYGLVTLKAFYLPWAMLALDVifgspllpnflGIIAGHLYYFLTVLhplaggrnilatpRWVHKLVAFWrlghptnasvqpergaggaftgrsyrlnlsssrpffprslwss
Flexible Loop (DISEMBL)
arygvqlekstferrtaDFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGHLYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGhptnasvqpergaGGAFTGRsyrlnlsssrpffprslwss
Low Complexity Region (SEG)
ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGHLYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERGAGGAFTGRSYRLNLSSSRPFFPRSLWSS
Disordered region (IsUnstruct)
***********FERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGHLYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPT*************************************
Disordered Region (DISOPRED)
*RYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGHLYYFLTVLHPLAGGRNILATPRWVHKLVAF********************************************
Disordered Region (DISEMBL)
ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGHLYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERGAGGAFTGRSYRLNLSSSRPFFPRSLWSS
Disordered Region (DISPRO)
******LEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGHLYYFLTVLHPLAGGRNILATPRWVHKLVAFW*****TNASV************RSY***LSSSRPFFP**L***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGHLYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERGAGGAFTGRSYRLNLSSSRPFFPRSLWSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q8VZU9	266	Derlin-1 OS=Arabidopsis t	yes	no	0.840	0.612	0.6	9e-60
Q06397	242	Derlin-1 OS=Oryza sativa	yes	no	0.840	0.673	0.618	1e-54
Q4G2J5	243	Derlin-1.2 OS=Zea mays GN	N/A	no	0.840	0.670	0.593	4e-52
Q4G2J6	243	Derlin-1.1 OS=Zea mays GN	N/A	no	0.840	0.670	0.576	2e-51
Q4G2J4	249	Derlin-2.1 OS=Zea mays GN	N/A	no	0.824	0.642	0.369	3e-21
Q4G2J3	249	Derlin-2.2 OS=Zea mays GN	N/A	no	0.824	0.642	0.369	5e-21
Q851X7	249	Derlin-2 OS=Oryza sativa	no	no	0.824	0.642	0.369	1e-20
Q8VZ96	244	Derlin-2.1 OS=Arabidopsis	no	no	0.731	0.581	0.355	2e-19
Q54NN1	254	Probable derlin-2 homolog	yes	no	0.706	0.539	0.371	9e-19
Q9ZS88	244	Derlin-2.2 OS=Arabidopsis	no	no	0.731	0.581	0.348	2e-18

>sp|Q8VZU9|DERL1_ARATH Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1

 Score =  229 bits (584), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 136/205 (66%), Gaps = 42/205 (20%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARYGVQLEK  FERRTADFLWMMIF S+                 LL LS IP  WTPFL
Sbjct: 77  ARYGVQLEKGPFERRTADFLWMMIFGSF----------------TLLVLSVIPFFWTPFL 120

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
           GVSLVFMLLY+WSREFP A IS+YGLVTLKAFYLPWAMLALDVIFGSP++P+ LGIIAGH
Sbjct: 121 GVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGH 180

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNASVQ------------------ 162
           LYYFLTVLHPLA G+N L TP+WV+K+VA WR+G P  +  Q                  
Sbjct: 181 LYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQAGGVGAAGPGAGGGVGGG 240

Query: 163 --------PERGAGGAFTGRSYRLN 179
                   P   +  AF GRSYRL 
Sbjct: 241 GAYSSARAPPESSNTAFRGRSYRLT 265

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q06397|DERL1_ORYSJ Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2

 Score =  212 bits (540), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/181 (61%), Positives = 129/181 (71%), Gaps = 18/181 (9%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARYGVQLEK  FE+RTADFLWMMIF +                  LLALSAIP L   FL
Sbjct: 77  ARYGVQLEKGAFEKRTADFLWMMIFGAI----------------SLLALSAIPFLDIYFL 120

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
           GV +V MLLYVWSRE+P +QIS+YGLV L++FYLPWAML LDVIFGS +LP  LGI+ GH
Sbjct: 121 GVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGLLGILVGH 180

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERG--AGGAFTGRSYRL 178
            YYFL+VLHPLA G+N L TP WVHK+VA +R+G   NA V+P       GAF GRSYRL
Sbjct: 181 TYYFLSVLHPLATGKNYLKTPMWVHKIVARFRIGVQANAPVRPAAANTGSGAFRGRSYRL 240

Query: 179 N 179
           +
Sbjct: 241 S 241

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4G2J5|DER12_MAIZE Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1

 Score =  204 bits (518), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 108/182 (59%), Positives = 126/182 (69%), Gaps = 19/182 (10%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARYGV LEK  F++RTADFLWMMIF +                  LL LS IP L T  L
Sbjct: 77  ARYGVMLEKGAFDKRTADFLWMMIFGAI----------------SLLVLSVIPQLNTYVL 120

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
           G+ +V ML+YVWSRE P AQI+IYG++ LKAFYLPW ML LDVIFGSPL+P  LGI+ GH
Sbjct: 121 GLPMVSMLVYVWSRENPNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGH 180

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNASVQ-PERGAG--GAFTGRSYR 177
           LYY+  VLHPLA G+N L TP+WVHK+VA +R+G   NA V+ P  G    GAF GRSYR
Sbjct: 181 LYYYFAVLHPLATGKNYLKTPKWVHKIVARFRIGMQANAPVRAPANGNAGTGAFRGRSYR 240

Query: 178 LN 179
           LN
Sbjct: 241 LN 242

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q4G2J6|DER11_MAIZE Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/182 (57%), Positives = 125/182 (68%), Gaps = 19/182 (10%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARYGV LEK  F++RTADFLWMMIF +                  LL LS IP+  + FL
Sbjct: 77  ARYGVMLEKGAFDKRTADFLWMMIFGAI----------------SLLVLSIIPLFNSFFL 120

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
           G+ +V MLLYVWSRE P AQI+IYGLV L++FYLPWAML LDVIFGS L+P  LGI+ GH
Sbjct: 121 GIPMVSMLLYVWSRENPNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGH 180

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNASVQPE---RGAGGAFTGRSYR 177
           LYYF  VLHPLA G++ L TP+WVHK+VA +R+G   N+ V+P        G F GRSYR
Sbjct: 181 LYYFFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVRPPANGNSGSGVFRGRSYR 240

Query: 178 LN 179
           LN
Sbjct: 241 LN 242

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q4G2J4|DER21_MAIZE Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 90/173 (52%), Gaps = 13/173 (7%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARY   LE+++F  RTADF +M++F + ++            +SE  A          FL
Sbjct: 78  ARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYISETFA-------RILFL 130

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
             SL FM++YVWS+  P   +S  GL T  A YLPW +L   ++ GS    + LG+IAGH
Sbjct: 131 SNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGH 190

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWR--LGHPTNASVQPERGAGGAF 171
           +YYFL  ++P   GR  L TP ++  L A     +  P NA +    GAG  F
Sbjct: 191 VYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVAQPPNAGI----GAGARF 239

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q4G2J3|DER22_MAIZE Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1

 Score =  100 bits (250), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 90/173 (52%), Gaps = 13/173 (7%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARY   LE+++F  RTADF +M++F + ++            +SE  A          FL
Sbjct: 78  ARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFA-------RILFL 130

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
             SL FM++YVWS+  P   +S  GL T  A YLPW +L   ++ GS    + LG+IAGH
Sbjct: 131 SNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGH 190

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWR--LGHPTNASVQPERGAGGAF 171
           +YYFL  ++P   GR  L TP ++  L A     +  P NA +    GAG  F
Sbjct: 191 VYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVAQPPNAGI----GAGARF 239

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q851X7|DERL2_ORYSJ Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 90/173 (52%), Gaps = 13/173 (7%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARY   LE+++F  RTADF +M++F + ++            +SE  A          FL
Sbjct: 78  ARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFA-------RILFL 130

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
             SL FM++YVWS+  P   +S  GL T  A YLPW +L   ++ GS    + LG+IAGH
Sbjct: 131 SNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGH 190

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWR--LGHPTNASVQPERGAGGAF 171
           +YYFL  ++P   GR  L TP ++  L A     +  P NA +    GAG  F
Sbjct: 191 VYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVARPPNAGL----GAGARF 239

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VZ96|DER21_ARATH Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=3

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 7/149 (4%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARY   LE+++F  +TADFL+M++F + ++           ++  ++   ++      FL
Sbjct: 78  ARYCKLLEENSFRGKTADFLYMLLFGATVLT-------GIVLIGGMIPYLSVSFSKIIFL 130

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
             SL FM++YVWS++ P   +S  GL T  A YLPW +L   ++ G+    +FLG+IAGH
Sbjct: 131 SNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWGDFLGMIAGH 190

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVA 149
            YYFL  ++P    R  L TP ++  L A
Sbjct: 191 AYYFLAFVYPRMTDRRPLKTPSFLKALFA 219

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54NN1|DERL2_DICDI Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1

 Score = 93.2 bits (230), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 11/148 (7%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
            R+   LE+S+F  R+AD+L+M IF S+++           ++   L  + I +    FL
Sbjct: 78  VRHSRLLEESSFRGRSADYLFMWIFGSFLLL----------IMDAFLFYTKI-VTKVLFL 126

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
             S+ FM++YVWSR  P   IS  GL T  A YLPW +L +  +F   L  + LG +AGH
Sbjct: 127 APSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDLLGAVAGH 186

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLV 148
            YYFL   +PL   R +L TP ++  L+
Sbjct: 187 AYYFLEDAYPLISNRRLLKTPGFLKNLM 214

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9ZS88|DER22_ARATH Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 7/149 (4%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARY   LE+++F  +TADFL+M++F + ++           ++  ++   +       FL
Sbjct: 78  ARYCKLLEENSFRGKTADFLYMLLFGASVLT-------GIVLIGGMIPYLSASFAKIIFL 130

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
             SL FM++YVWS++ P   +S  GL T  A YLPW +L   ++ G+    + LG+IAGH
Sbjct: 131 SNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWVDLLGMIAGH 190

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVA 149
            YYFL  ++P    R  L TP ++  L A
Sbjct: 191 AYYFLAEVYPRMTNRRPLKTPSFLKALFA 219

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
225429398	240	PREDICTED: derlin-1 [Vitis vinifera] gi|	0.840	0.679	0.726	9e-67
255646211	172	unknown [Glycine max]	0.835	0.941	0.679	6e-62
356523830	246	PREDICTED: derlin-1-like [Glycine max]	0.835	0.658	0.679	1e-61
224091361	249	predicted protein [Populus trichocarpa]	0.840	0.654	0.691	1e-61
388512087	246	unknown [Lotus japonicus]	0.840	0.662	0.675	1e-61
357520809	245	Derlin-1 [Medicago truncatula] gi|355524	0.840	0.665	0.673	2e-61
388519987	246	unknown [Lotus japonicus]	0.840	0.662	0.664	1e-60
449435794	242	PREDICTED: derlin-1-like [Cucumis sativu	0.840	0.673	0.679	1e-60
356513179	246	PREDICTED: derlin-1-like [Glycine max]	0.835	0.658	0.679	2e-60
255588641	277	Derlin-2, putative [Ricinus communis] gi	0.871	0.610	0.605	2e-58

>gi|225429398|ref|XP_002275238.1| PREDICTED: derlin-1 [Vitis vinifera] gi|296081591|emb|CBI20596.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (659), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 130/179 (72%), Positives = 142/179 (79%), Gaps = 16/179 (8%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARYGVQLEK  FERRTADFLWMMIF +                  LL LSAIP+LWTPFL
Sbjct: 77  ARYGVQLEKGVFERRTADFLWMMIFGAL----------------TLLVLSAIPLLWTPFL 120

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
           GVSLVFMLLYVWSREFP AQI++YGLV LKAFY PWAMLALDVIFGS +LP+ LGI+AGH
Sbjct: 121 GVSLVFMLLYVWSREFPNAQINLYGLVQLKAFYFPWAMLALDVIFGSQILPDLLGIVAGH 180

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERGAGGAFTGRSYRLN 179
           LYYFLTVLHPL+ G+NIL TPRWVHKLVA +R+G+PT A  QPER AG AF GR YRLN
Sbjct: 181 LYYFLTVLHPLSTGKNILKTPRWVHKLVARFRIGYPTTAPAQPERAAGVAFRGRGYRLN 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646211|gb|ACU23590.1| unknown [Glycine max]

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 125/184 (67%), Positives = 138/184 (75%), Gaps = 22/184 (11%)

Query: 2   RYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLG 61
           RYGVQLEK  F+RRTADFLWMMIF ++                 LL LSAIP+ W+PFL 
Sbjct: 4   RYGVQLEKGPFDRRTADFLWMMIFGAF----------------ALLVLSAIPIFWSPFLA 47

Query: 62  VSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGHL 121
           V LVFMLLYVWSREFP AQI+IYGLV LKAFYLPWAMLALDVIFGSPL+P+ LGIIAGHL
Sbjct: 48  VPLVFMLLYVWSREFPNAQINIYGLVALKAFYLPWAMLALDVIFGSPLIPDLLGIIAGHL 107

Query: 122 YYFLTVLHPLAGGRNILATPRWVHKLVAFWRLG------HPTNASVQPERGAGGAFTGRS 175
           YYF TVLHPLAGG+NIL TP WVHKL+A WR+G       P   + Q ERG+G AF GRS
Sbjct: 108 YYFFTVLHPLAGGKNILKTPMWVHKLIARWRIGVQPISRGPAANNPQQERGSGAAFRGRS 167

Query: 176 YRLN 179
           YRL 
Sbjct: 168 YRLG 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523830|ref|XP_003530537.1| PREDICTED: derlin-1-like [Glycine max]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/184 (67%), Positives = 138/184 (75%), Gaps = 22/184 (11%)

Query: 2   RYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLG 61
           RYGVQLEK  F+RRTADFLWMMIF ++                 LL LSAIP+ W+PFL 
Sbjct: 78  RYGVQLEKGPFDRRTADFLWMMIFGAF----------------ALLVLSAIPIFWSPFLA 121

Query: 62  VSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGHL 121
           V LVFMLLYVWSREFP AQI+IYGLV LKAFYLPWAMLALDVIFGSPL+P+ LGIIAGHL
Sbjct: 122 VPLVFMLLYVWSREFPNAQINIYGLVALKAFYLPWAMLALDVIFGSPLIPDLLGIIAGHL 181

Query: 122 YYFLTVLHPLAGGRNILATPRWVHKLVAFWRLG------HPTNASVQPERGAGGAFTGRS 175
           YYF TVLHPLAGG+NIL TP WVHKL+A WR+G       P   + Q ERG+G AF GRS
Sbjct: 182 YYFFTVLHPLAGGKNILKTPMWVHKLIARWRIGVQPISRGPAANNPQQERGSGVAFRGRS 241

Query: 176 YRLN 179
           YRL 
Sbjct: 242 YRLG 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091361|ref|XP_002309232.1| predicted protein [Populus trichocarpa] gi|222855208|gb|EEE92755.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 130/188 (69%), Positives = 142/188 (75%), Gaps = 25/188 (13%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARYGVQLEK  FERRTADFLWMMIF +                  LL LSAIP+ W+PFL
Sbjct: 77  ARYGVQLEKGPFERRTADFLWMMIFGAL----------------SLLVLSAIPIFWSPFL 120

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
           G+SLVFMLLYVWSREFP AQI+IYGLVTLKAFYLPWAMLALDVIFG+PL+P+ LGIIAGH
Sbjct: 121 GISLVFMLLYVWSREFPNAQINIYGLVTLKAFYLPWAMLALDVIFGAPLVPDLLGIIAGH 180

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNA--SVQPER---GAGG----AF 171
           LYYFLTVLHPLA G  +L TPRWV+KLVA WR+G PT    S QP+R    A G    AF
Sbjct: 181 LYYFLTVLHPLATGNILLRTPRWVNKLVARWRIGAPTPTYNSAQPDRTTQAADGTTSAAF 240

Query: 172 TGRSYRLN 179
            GRSYRLN
Sbjct: 241 RGRSYRLN 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512087|gb|AFK44105.1| unknown [Lotus japonicus]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/185 (67%), Positives = 139/185 (75%), Gaps = 22/185 (11%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARYGVQLEK  F+RRTADFLWMMIF  +                 LL LSAIP LWTPFL
Sbjct: 77  ARYGVQLEKGPFDRRTADFLWMMIFGGF----------------ALLVLSAIPFLWTPFL 120

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
            +S+VFMLLY+WSREFP AQI+IYGLV+LKAFYLPWAMLALDVIFGSP++P+ LGIIAGH
Sbjct: 121 AISVVFMLLYIWSREFPIAQINIYGLVSLKAFYLPWAMLALDVIFGSPIIPDLLGIIAGH 180

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNAS-VQP-----ERGAGGAFTGR 174
           LYYFLTVLHPLAGG+NIL TP WVHK VA WR+G P   S  QP     +  + G F GR
Sbjct: 181 LYYFLTVLHPLAGGKNILKTPMWVHKSVARWRIGAPAVVSRAQPVNNARQESSSGVFRGR 240

Query: 175 SYRLN 179
           SYRLN
Sbjct: 241 SYRLN 245

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520809|ref|XP_003630693.1| Derlin-1 [Medicago truncatula] gi|355524715|gb|AET05169.1| Derlin-1 [Medicago truncatula] gi|388496922|gb|AFK36527.1| unknown [Medicago truncatula]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/184 (67%), Positives = 136/184 (73%), Gaps = 21/184 (11%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
            RYGVQLEK  F+RRTADFLWMMIF ++                 LL LSAIP  WTPFL
Sbjct: 77  VRYGVQLEKGPFDRRTADFLWMMIFGAF----------------ALLVLSAIPFFWTPFL 120

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
            +SLVFMLLYVWSREFP AQI++YGLV LKAFYLPWAMLALDVIFGS L+P+ LGIIAGH
Sbjct: 121 AISLVFMLLYVWSREFPNAQINLYGLVALKAFYLPWAMLALDVIFGSALMPDLLGIIAGH 180

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNASVQP-----ERGAGGAFTGRS 175
           LYYFLTVLHPLAGG+NIL TP WVHKLVA WR+G P     QP     +  + G F GRS
Sbjct: 181 LYYFLTVLHPLAGGKNILKTPMWVHKLVARWRIGAPPITRGQPVNNVQQESSSGVFRGRS 240

Query: 176 YRLN 179
           YRLN
Sbjct: 241 YRLN 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519987|gb|AFK48055.1| unknown [Lotus japonicus]

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/185 (66%), Positives = 138/185 (74%), Gaps = 22/185 (11%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARYGVQLE+  F+RRTADFLWMMIF  +                 LL LSAIP LWTPFL
Sbjct: 77  ARYGVQLERGPFDRRTADFLWMMIFGGF----------------ALLVLSAIPFLWTPFL 120

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
            +S+VFMLLY+WSREFP AQI+IYGLV+LKAFYLPWAMLALDVIFGSP++P+ LGIIAGH
Sbjct: 121 AISVVFMLLYIWSREFPIAQINIYGLVSLKAFYLPWAMLALDVIFGSPIIPDLLGIIAGH 180

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNAS-VQP-----ERGAGGAFTGR 174
           LYYF TVLHPLAGG+NIL TP WVHKLVA WR+G P      QP     +  + G F GR
Sbjct: 181 LYYFSTVLHPLAGGKNILKTPMWVHKLVARWRIGAPAVVGRAQPVNNARQESSSGVFRGR 240

Query: 175 SYRLN 179
           SYRLN
Sbjct: 241 SYRLN 245

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435794|ref|XP_004135679.1| PREDICTED: derlin-1-like [Cucumis sativus] gi|449489818|ref|XP_004158425.1| PREDICTED: derlin-1-like [Cucumis sativus]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/181 (67%), Positives = 138/181 (76%), Gaps = 18/181 (9%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARYGVQLE   F+RRTADFLWMMIF S                  LL L+AIP+   P L
Sbjct: 77  ARYGVQLENGPFQRRTADFLWMMIFGSL----------------TLLVLAAIPIFQFPVL 120

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
           G+SLVFMLLYVWSREFP AQI+IYGLVTLKAFYLPWAMLALDVIFGSPL+P+ LGI+AGH
Sbjct: 121 GISLVFMLLYVWSREFPNAQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGILAGH 180

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHP--TNASVQPERGAGGAFTGRSYRL 178
           LYYFLTVLHPLAGG+NIL TP W+ +LV+ WR+G P    A+V  +RG  GAF GRSYRL
Sbjct: 181 LYYFLTVLHPLAGGKNILRTPFWIQRLVSRWRIGAPPMQRAAVPDDRGTSGAFRGRSYRL 240

Query: 179 N 179
           N
Sbjct: 241 N 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513179|ref|XP_003525291.1| PREDICTED: derlin-1-like [Glycine max]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/184 (67%), Positives = 138/184 (75%), Gaps = 22/184 (11%)

Query: 2   RYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLG 61
           RYGVQLEK  F+RRTADFLWMMIF ++                 LL LSAIP+ W+PFL 
Sbjct: 78  RYGVQLEKGPFDRRTADFLWMMIFGAF----------------ALLVLSAIPIFWSPFLA 121

Query: 62  VSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGHL 121
           V LVFMLLYVWSREFP AQI+IYGLV LKAFYLPWAMLALD+IFGSPL+P+ LGIIAGHL
Sbjct: 122 VPLVFMLLYVWSREFPNAQINIYGLVALKAFYLPWAMLALDIIFGSPLIPDLLGIIAGHL 181

Query: 122 YYFLTVLHPLAGGRNILATPRWVHKLVAFWRLG-HPTN-----ASVQPERGAGGAFTGRS 175
           YYFLTVLHPLAGG+NIL TP WVHKLVA W +G  P +        Q ERG+G AF GRS
Sbjct: 182 YYFLTVLHPLAGGKNILKTPMWVHKLVARWIIGVQPISRGQAANDPQQERGSGVAFRGRS 241

Query: 176 YRLN 179
           YRL 
Sbjct: 242 YRLG 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588641|ref|XP_002534670.1| Derlin-2, putative [Ricinus communis] gi|223524794|gb|EEF27712.1| Derlin-2, putative [Ricinus communis]

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/185 (60%), Positives = 141/185 (76%), Gaps = 16/185 (8%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
           ARYGV LE+ TF++RTADF+WM  F +                  LLA++AIPMLW+PF+
Sbjct: 77  ARYGVSLERGTFDKRTADFVWMFFFGAL----------------SLLAMAAIPMLWSPFM 120

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
           GVSLVFM++Y+WSREFP A+I+IYGLV+LK FYLPWAMLALD+IFG+PL P+ LG++AGH
Sbjct: 121 GVSLVFMIVYIWSREFPNARINIYGLVSLKGFYLPWAMLALDLIFGNPLKPDILGMVAGH 180

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERGAGGAFTGRSYRLNL 180
           +YYFLTVLHPL+GG+ +L TP WVHKLVAFW  G   N+ VQ +  AG AF GRS+RLN 
Sbjct: 181 IYYFLTVLHPLSGGKFVLKTPFWVHKLVAFWGKGTQINSPVQRDPSAGVAFRGRSFRLNG 240

Query: 181 SSSRP 185
           + + P
Sbjct: 241 TRTNP 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2118294	266	DER1 "AT4G29330" [Arabidopsis	0.804	0.586	0.693	5.1e-58
UNIPROTKB|F6PVF9	239	DERL2 "Uncharacterized protein	0.608	0.493	0.355	7.6e-22
UNIPROTKB|Q9GZP9	239	DERL2 "Derlin-2" [Homo sapiens	0.608	0.493	0.355	7.6e-22
UNIPROTKB|Q5RC74	239	DERL2 "Derlin-2" [Pongo abelii	0.608	0.493	0.355	7.6e-22
MGI|MGI:2151483	239	Derl2 "Der1-like domain family	0.608	0.493	0.347	7.6e-22
TAIR|locus:2141652	244	DER2.1 "AT4G21810" [Arabidopsi	0.731	0.581	0.382	1.1e-21
DICTYBASE|DDB_G0285131	254	derl2 "derlin-2" [Dictyosteliu	0.690	0.527	0.375	1.5e-21
ZFIN|ZDB-GENE-050522-90	239	derl2 "Der1-like domain family	0.608	0.493	0.347	4.1e-21
RGD|6496100	239	LOC100910823 "derlin-2-like" [	0.561	0.456	0.348	5.2e-21
TAIR|locus:2138952	244	DER2.2 "AT4G04860" [Arabidopsi	0.731	0.581	0.375	8e-21

TAIR|locus:2118294 DER1 "AT4G29330" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 120/173 (69%), Positives = 132/173 (76%)

Query:     1 ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
             ARYGVQLEK  FERRTADFLWMMIF S+                 LL LS IP  WTPFL
Sbjct:    77 ARYGVQLEKGPFERRTADFLWMMIFGSFT----------------LLVLSVIPFFWTPFL 120

Query:    61 GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
             GVSLVFMLLY+WSREFP A IS+YGLVTLKAFYLPWAMLALDVIFGSP++P+ LGIIAGH
Sbjct:   121 GVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGH 180

Query:   121 LYYFLTVLHPLAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERGAGGAFTG 173
             LYYFLTVLHPLA G+N L TP+WV+K+VA WR+G P  ASV+   G G A  G
Sbjct:   181 LYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPV-ASVRQAGGVGAAGPG 232

GO:0003674 "molecular_function" evidence=ND

GO:0006508 "proteolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|F6PVF9 DERL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 198 (74.8 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
 Identities = 43/121 (35%), Positives = 66/121 (54%)

Query:    59 FLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIA 118
             FLG +   ML+YVWSR  P  +++ +GL+  +A +LPW ++   ++ G+ ++ + LGI  
Sbjct:   119 FLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAV 178

Query:   119 GHLYYFLTVLHP-LAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERGAGGAFTGRSYR 177
             GH+Y+FL  + P   GG  IL TP  + K + F       N +  PE   GG   G   R
Sbjct:   179 GHIYFFLEDVFPNQPGGIRILKTPS-ILKAI-FDTPDEDPNYNPLPEERPGGFAWGEGQR 236

Query:   178 L 178
             L
Sbjct:   237 L 237

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

UNIPROTKB|Q9GZP9 DERL2 "Derlin-2" [Homo sapiens (taxid:9606)]

 Score = 198 (74.8 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
 Identities = 43/121 (35%), Positives = 66/121 (54%)

Query:    59 FLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIA 118
             FLG +   ML+YVWSR  P  +++ +GL+  +A +LPW ++   ++ G+ ++ + LGI  
Sbjct:   119 FLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAV 178

Query:   119 GHLYYFLTVLHP-LAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERGAGGAFTGRSYR 177
             GH+Y+FL  + P   GG  IL TP  + K + F       N +  PE   GG   G   R
Sbjct:   179 GHIYFFLEDVFPNQPGGIRILKTPS-ILKAI-FDTPDEDPNYNPLPEERPGGFAWGEGQR 236

Query:   178 L 178
             L
Sbjct:   237 L 237

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IDA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IMP

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5RC74 DERL2 "Derlin-2" [Pongo abelii (taxid:9601)]

 Score = 198 (74.8 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
 Identities = 43/121 (35%), Positives = 66/121 (54%)

Query:    59 FLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIA 118
             FLG +   ML+YVWSR  P  +++ +GL+  +A +LPW ++   ++ G+ ++ + LGI  
Sbjct:   119 FLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAV 178

Query:   119 GHLYYFLTVLHP-LAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERGAGGAFTGRSYR 177
             GH+Y+FL  + P   GG  IL TP  + K + F       N +  PE   GG   G   R
Sbjct:   179 GHIYFFLEDVFPNQPGGIRILKTPS-ILKAI-FDTPDEDPNYNPLPEERPGGFAWGEGQR 236

Query:   178 L 178
             L
Sbjct:   237 L 237

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0030307 "positive regulation of cell growth" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISS

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISS

MGI|MGI:2151483 Derl2 "Der1-like domain family, member 2" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
 Identities = 42/121 (34%), Positives = 65/121 (53%)

Query:    59 FLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIA 118
             FLG +   ML+YVWSR  P  +++ +GL+  +A +LPW ++   ++ G+ ++ + LGI  
Sbjct:   119 FLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAV 178

Query:   119 GHLYYFLTVLHP-LAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERGAGGAFTGRSYR 177
             GH+Y+FL  + P   GG  IL TP  +  +  F       N +  PE   GG   G   R
Sbjct:   179 GHIYFFLEDIFPNQPGGIRILKTPSILRTI--FDTPDEDPNYNPLPEERPGGFAWGEGQR 236

Query:   178 L 178
             L
Sbjct:   237 L 237

GO:0001967 "suckling behavior" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005769 "early endosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISO;IMP

TAIR|locus:2141652 DER2.1 "AT4G21810" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 57/149 (38%), Positives = 84/149 (56%)

Query:     1 ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
             ARY   LE+++F  +TADFL+M++F + ++            LS  ++ S I      FL
Sbjct:    78 ARYCKLLEENSFRGKTADFLYMLLFGATVLTGIVLIGGMIPYLS--VSFSKII-----FL 130

Query:    61 GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
               SL FM++YVWS++ P   +S  GL T  A YLPW +L   ++ G+    +FLG+IAGH
Sbjct:   131 SNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWGDFLGMIAGH 190

Query:   121 LYYFLTVLHPLAGGRNILATPRWVHKLVA 149
              YYFL  ++P    R  L TP ++  L A
Sbjct:   191 AYYFLAFVYPRMTDRRPLKTPSFLKALFA 219

GO:0003674 "molecular_function" evidence=ND

GO:0006508 "proteolysis" evidence=ISS

DICTYBASE|DDB_G0285131 derl2 "derlin-2" [Dictyostelium discoideum (taxid:44689)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 56/149 (37%), Positives = 85/149 (57%)

Query:     2 RYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFY--VLSELLALSAIPMLWTPF 59
             R+   LE+S+F  R+AD+L+M IF S+++      ++ FY  +++++L           F
Sbjct:    79 RHSRLLEESSFRGRSADYLFMWIFGSFLL--LIMDAFLFYTKIVTKVL-----------F 125

Query:    60 LGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAG 119
             L  S+ FM++YVWSR  P   IS  GL T  A YLPW +L +  +F   L  + LG +AG
Sbjct:   126 LAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDLLGAVAG 185

Query:   120 HLYYFLTVLHPLAGGRNILATPRWVHKLV 148
             H YYFL   +PL   R +L TP ++  L+
Sbjct:   186 HAYYFLEDAYPLISNRRLLKTPGFLKNLM 214

GO:0003674 "molecular_function" evidence=ND

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

ZFIN|ZDB-GENE-050522-90 derl2 "Der1-like domain family, member 2" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
 Identities = 42/121 (34%), Positives = 66/121 (54%)

Query:    59 FLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIA 118
             FLG +   ML+Y+WSR  P  +++ +GL+  +A +LPW ++   ++ G+ ++ + LGI  
Sbjct:   119 FLGQAFTIMLVYIWSRRNPNVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAV 178

Query:   119 GHLYYFLTVLHP-LAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERGAGGAFTGRSYR 177
             GH+YYFL  + P   GG   L TP  + K++ F       N +  PE   GG   G   R
Sbjct:   179 GHVYYFLEDVFPNQPGGGRWLRTPS-ILKML-FDTPEEDANYNPLPEDRPGGFAWGEGQR 236

Query:   178 L 178
             L
Sbjct:   237 L 237

GO:0003674 "molecular_function" evidence=ND

RGD|6496100 LOC100910823 "derlin-2-like" [Rattus norvegicus (taxid:10116)]

 Score = 190 (71.9 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
 Identities = 39/112 (34%), Positives = 62/112 (55%)

Query:    59 FLGVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIA 118
             FLG +   ML+YVWSR  P  +++ +GL+  +A +LPW ++   ++ G+ ++ + LGI  
Sbjct:   119 FLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAV 178

Query:   119 GHLYYFLTVLHP-LAGGRNILATPRWVHKLVAFWRLGHPTNASVQPERGAGG 169
             GH+Y+FL  + P   GG  IL TP  +  +  F       N +  PE   GG
Sbjct:   179 GHIYFFLEDIFPNQPGGIRILKTPSILRTI--FDTPDEDPNYNPLPEERPGG 228

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

TAIR|locus:2138952 DER2.2 "AT4G04860" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 56/149 (37%), Positives = 81/149 (54%)

Query:     1 ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
             ARY   LE+++F  +TADFL+M++F + ++            LS   A   I      FL
Sbjct:    78 ARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSASFA-KII------FL 130

Query:    61 GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGH 120
               SL FM++YVWS++ P   +S  GL T  A YLPW +L   ++ G+    + LG+IAGH
Sbjct:   131 SNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWVDLLGMIAGH 190

Query:   121 LYYFLTVLHPLAGGRNILATPRWVHKLVA 149
              YYFL  ++P    R  L TP ++  L A
Sbjct:   191 AYYFLAEVYPRMTNRRPLKTPSFLKALFA 219

GO:0006508 "proteolysis" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VZU9	DERL1_ARATH	No assigned EC number	0.6	0.8402	0.6127	yes	no
Q06397	DERL1_ORYSJ	No assigned EC number	0.6187	0.8402	0.6735	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam04511	192	pfam04511, DER1, Der1-like family	6e-19
COG5291	313	COG5291, COG5291, Predicted membrane protein [Func	3e-09

>gnl|CDD|218120 pfam04511, DER1, Der1-like family

 Score = 80.0 bits (198), Expect = 6e-19
 Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 20/143 (13%)

Query: 1   ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFL 60
            RY   LE  +F  R AD+L+M+IF + +I    F                       FL
Sbjct: 67  YRYSSMLENGSFRGRAADYLYMLIFGAVLIT--IFGLIVNAY----------------FL 108

Query: 61  GVSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFG-SPLLPNFLGIIAG 119
           G  L  M++YVWSR+    Q++ +GL+  KA YLPW +L    + G    L + +GI+ G
Sbjct: 109 GQGLTAMIVYVWSRKNADVQVNFFGLIRFKASYLPWVLLGFSFLLGNRSSLVDLMGILVG 168

Query: 120 HLYYFLTVLHP-LAGGRNILATP 141
           HLYYF   ++P L GG+++L TP
Sbjct: 169 HLYYFFKDVYPRLPGGKDLLKTP 191

The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae contains of proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process. The mutant classes were called 'der' for 'degradation in the ER'. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein, that is localised to the ER. Deletion of DER1 abolished degradation of the substrate proteins. The function of the Der1 protein seems to be specifically required for the degradation process associated with the ER. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. Suggesting that this family may also mediate degradation of misfolded proteins (Bateman A pers. obs.). Length = 192

>gnl|CDD|227611 COG5291, COG5291, Predicted membrane protein [Function unknown]

 Score = 54.6 bits (131), Expect = 3e-09
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 19/147 (12%)

Query: 2   RYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLG 61
           RY   LE+  F     ++ W ++  S +I             S +    +        LG
Sbjct: 86  RYSRMLEEGCFNTSLVEYFWYLLVISLVIFAI----------SNIYGGISA-------LG 128

Query: 62  VSLVFMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALDVIFGSPL-LPNFLGIIAGH 120
            S    + Y+WS+  P A I  +G +++   YLP+ +L    +    + + + LG + GH
Sbjct: 129 TSFSATITYIWSKRNPRAIIQFFGFISVPGKYLPFILLGFSFLSRRGISIDDVLGFVVGH 188

Query: 121 LYYFLTVLHPLAGGRNILATPRWVHKL 147
           L+++   ++P+  GR+IL+TP WV KL
Sbjct: 189 LFHYFGDIYPMI-GRDILSTPCWVKKL 214

Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG0858	239	consensus Predicted membrane protein [Function unk	100.0
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	100.0
COG5291	313	Predicted membrane protein [Function unknown]	99.95
KOG2632	258	consensus Rhomboid family proteins [Function unkno	95.91

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=3.1e-42  Score=294.89  Aligned_cols=133  Identities=45%  Similarity=0.911  Sum_probs=123.4

Q ss_pred             CcchhhhcccCCCCCchhHHHHHHHHHHHhhhhhccccchhhhhHHHHHhhccccchhhhHHHHHHHHHHHHhhhCCCCe
Q 035602            1 ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLGVSLVFMLLYVWSREFPTAQ   80 (194)
Q Consensus         1 ~~ys~~LE~~~f~~~~aDyl~~llf~~~~I~~~~~~~~~~~~~~~l~~~s~~~~~~~~fL~~~L~~~l~YiWsr~np~~~   80 (194)
                      +|||++||+++|++|++||+||++|+.++++                +.+.+  ....+|+++|+.+++|+|||+||+++
T Consensus        78 yrY~~~LE~g~f~~rtadf~~mllf~~~l~~----------------~~~~~--~~~~fLg~~l~~~l~YvWs~~Np~~~  139 (239)
T KOG0858|consen   78 YRYSSMLEEGSFRGRTADFLYMLLFGAVLLT----------------LTGLF--VYIVFLGQSLVFMLVYVWSKRNPDVI  139 (239)
T ss_pred             HHHHHHHhcCCCCCchhHHHHHHHHHHHHHH----------------HHHHH--HHHHHHHHHHHHHHHHHHHhhCCCce
Confidence            5899999999999999999999999999543                33332  56889999999999999999999999


Q ss_pred             eEEEEeeeecccchHHHHHHHHHHhCCCchhhhHhhhhhhhhhhhhhcccC-CCCCCCcCChHHHHHhhhcc
Q 035602           81 ISIYGLVTLKAFYLPWAMLALDVIFGSPLLPNFLGIIAGHLYYFLTVLHPL-AGGRNILATPRWVHKLVAFW  151 (194)
Q Consensus        81 vs~~Gl~~i~a~yLP~v~l~~~~l~g~~~~~~l~Gi~~GH~y~fl~~i~P~-~~g~~~L~tP~~l~~l~~~~  151 (194)
                      |||+|++++||+||||++++++++.|++.+.|++||++||+|+|+++++|. .||+++++||+|++++++++
T Consensus       140 v~F~g~~~f~a~YlPwvll~fs~l~g~~~~~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~~~  211 (239)
T KOG0858|consen  140 VSFFGLITFKAPYLPWVLLGFSFLFGGSILVDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFADS  211 (239)
T ss_pred             EEEEEEecCccccchHHHHHHHHHhCCchHHHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcCCC
Confidence            999999999999999999999999999889999999999999999999998 67799999999999999973

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=100.00  E-value=2.2e-36  Score=252.10  Aligned_cols=126  Identities=47%  Similarity=0.978  Sum_probs=113.6

Q ss_pred             CcchhhhcccCCCCCchhHHHHHHHHHHHhhhhhccccchhhhhHHHHHhhcc---ccchhhhHHHHHHHHHHHHhhhCC
Q 035602            1 ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIP---MLWTPFLGVSLVFMLLYVWSREFP   77 (194)
Q Consensus         1 ~~ys~~LE~~~f~~~~aDyl~~llf~~~~I~~~~~~~~~~~~~~~l~~~s~~~---~~~~~fL~~~L~~~l~YiWsr~np   77 (194)
                      ++||++||+++|++|++||+||+++++++|+                +++.+.   ..+.++++++|+.+++|+|||+||
T Consensus        67 ~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~----------------~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np  130 (197)
T PF04511_consen   67 YQYSSSLEEGHFQGRSADYLWFLLFGASLIL----------------ILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNP  130 (197)
T ss_pred             HHHhhHhccCCCCCCHHHHHHHHHHHHHHHH----------------HHHHhhccchhHHHHHHHHHHHHHHHHHHHhCc
Confidence            4899999999999999999999999998553                333221   135689999999999999999999


Q ss_pred             CCeeEEEEeeeecccchHHHHHHHHHHhCC-CchhhhHhhhhhhhhhhhhhcccCC-CCCCCcCChH
Q 035602           78 TAQISIYGLVTLKAFYLPWAMLALDVIFGS-PLLPNFLGIIAGHLYYFLTVLHPLA-GGRNILATPR  142 (194)
Q Consensus        78 ~~~vs~~Gl~~i~a~yLP~v~l~~~~l~g~-~~~~~l~Gi~~GH~y~fl~~i~P~~-~g~~~L~tP~  142 (194)
                      +++||++|++++||+|+||+++++++++++ +..+|++||++||+|||+++++|+. +|+++||||+
T Consensus       131 ~~~v~~~g~~~i~a~ylP~~~~~~~~l~~~~~~~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~  197 (197)
T PF04511_consen  131 NAQVSFFGLFTIKAKYLPWVLLAFSLLFGGSSPIPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ  197 (197)
T ss_pred             ccceeeEEEEEEChhhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence            999999999999999999999999999998 7899999999999999999999984 6899999996

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>COG5291 Predicted membrane protein [Function unknown]

Probab=99.95  E-value=8.4e-29  Score=213.81  Aligned_cols=131  Identities=31%  Similarity=0.658  Sum_probs=115.5

Q ss_pred             CcchhhhcccCCCCCchhHHHHHHHHHHHhhhhhccccchhhhhHHHHHhhccccchhhhHHHHHHHHHHHHhhhCCCCe
Q 035602            1 ARYGVQLEKSTFERRTADFLWMMIFSSYIIAEFFFSSWDFYVLSELLALSAIPMLWTPFLGVSLVFMLLYVWSREFPTAQ   80 (194)
Q Consensus         1 ~~ys~~LE~~~f~~~~aDyl~~llf~~~~I~~~~~~~~~~~~~~~l~~~s~~~~~~~~fL~~~L~~~l~YiWsr~np~~~   80 (194)
                      |+||++||+++|...-.||+||+++|..+|.                .++.+. -....|+++++.+|+|+||++||+++
T Consensus        85 Y~yS~~LE~g~f~~~lv~Y~~yl~~~~l~i~----------------a~s~I~-gg~saL~tsf~a~ItY~WS~~N~~~~  147 (313)
T COG5291          85 YRYSRMLEEGCFNTSLVEYFWYLLVISLVIF----------------AISNIY-GGISALGTSFSATITYIWSKRNPRAI  147 (313)
T ss_pred             HHHHHHHhccccCccHHHHHHHHHHHHHHHH----------------HHHHHh-cchhhhcchhhhheeeeeeecCCceE
Confidence            6899999999998777899999999999664                344431 23557999999999999999999999


Q ss_pred             eEEEEeeeecccchHHHHHHHHHHhC-CCchhhhHhhhhhhhhhhhhhcccCCCCCCCcCChHHHHHhhh
Q 035602           81 ISIYGLVTLKAFYLPWAMLALDVIFG-SPLLPNFLGIIAGHLYYFLTVLHPLAGGRNILATPRWVHKLVA  149 (194)
Q Consensus        81 vs~~Gl~~i~a~yLP~v~l~~~~l~g-~~~~~~l~Gi~~GH~y~fl~~i~P~~~g~~~L~tP~~l~~l~~  149 (194)
                      |+|+|+|+++++|||+++++++++++ +....+++|+++||.++++.+|+|.. |++.+.||.|.++++.
T Consensus       148 Iqf~g~i~v~gkYlP~Illgfsfl~~~g~~i~~vlGf~~g~~~h~~g~I~~mi-~r~~~~t~~~~~~~~~  216 (313)
T COG5291         148 IQFFGFISVPGKYLPFILLGFSFLSRRGISIDDVLGFVVGHLFHYFGDIYPMI-GRDILSTPCWVKKLFN  216 (313)
T ss_pred             EEEEEeeecchhhhhHHHHHHHHHhcCCccceeeeeeeeccccccccchhhhh-hcccCCCccccccccc
Confidence            99999999999999999999999999 56799999999999999999999987 6777888888887764

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=95.91  E-value=0.027  Score=49.76  Aligned_cols=60  Identities=25%  Similarity=0.579  Sum_probs=50.2

Q ss_pred             HHHHHHHhhhCCCCeeEEEEeeeecccchHHHHHHHH-HHhC-CCchhhhHhhhhhhhhhhh
Q 035602           66 FMLLYVWSREFPTAQISIYGLVTLKAFYLPWAMLALD-VIFG-SPLLPNFLGIIAGHLYYFL  125 (194)
Q Consensus        66 ~~l~YiWsr~np~~~vs~~Gl~~i~a~yLP~v~l~~~-~l~g-~~~~~~l~Gi~~GH~y~fl  125 (194)
                      ++++=+-+-+.|....+++|.+++|++|-||+.++++ ++.. .+++..+-|+++|..|-|.
T Consensus       134 Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  134 FAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             HHHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            3344444778889999999999999999999999997 5555 4789999999999999884

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00