Citrus Sinensis ID: 035659
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 655 | 2.2.26 [Sep-21-2011] | |||||||
| O82380 | 738 | Pentatricopeptide repeat- | yes | no | 0.914 | 0.811 | 0.495 | 1e-179 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.928 | 0.980 | 0.436 | 1e-156 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.920 | 0.933 | 0.409 | 1e-146 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.986 | 0.871 | 0.393 | 1e-146 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.922 | 0.971 | 0.423 | 1e-142 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.859 | 0.946 | 0.403 | 1e-139 | |
| Q0WQW5 | 638 | Pentatricopeptide repeat- | no | no | 0.896 | 0.920 | 0.396 | 1e-137 | |
| Q9FND7 | 612 | Putative pentatricopeptid | no | no | 0.923 | 0.988 | 0.399 | 1e-136 | |
| P0C899 | 686 | Putative pentatricopeptid | no | no | 0.940 | 0.897 | 0.386 | 1e-135 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.955 | 0.990 | 0.392 | 1e-131 |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 629 bits (1621), Expect = e-179, Method: Compositional matrix adjust.
Identities = 305/615 (49%), Positives = 432/615 (70%), Gaps = 16/615 (2%)
Query: 44 LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
LIK + L + +H +++ + D + A+ L C + L+ A ++F I +
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIH-CYF-SCGDLDSACKVFTTIKE 194
Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
++ +WN++I + P ++ +F ++ + + T V+ A A++ G+
Sbjct: 195 KDVVSWNSMINGFVQKGSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253
Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
+ + ++ +L ++N+++ Y CG + A +F + +KD V+W +M+ G+
Sbjct: 254 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313
Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
+E A E+ M +++ V A++SA E PNEAL +FHELQL KN+
Sbjct: 314 YEAAREVLNSMPQKDI----VAWNALISA------YEQNGKPNEALIVFHELQLQKNMKL 363
Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
++ T VS LSACAQ+GA+++G IH+ +KK GI++N ++T++LI MY+KCG+L+K+ EVF
Sbjct: 364 NQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423
Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
++V+ RDVFVWS MI G AM+GCG EA+D+F +MQEA VKPN VTFTNV CACSH+GLVD
Sbjct: 424 NSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 483
Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
E F+QME YG+VP KHY C+VD+LGR+G L++AV+FIE MPI P SVWGALLGA
Sbjct: 484 EAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 543
Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
CKIH N+ LAE AC+ LLELEP N GA VLLSNIYAK GKW+NVSELRKHMRV+GLKKEP
Sbjct: 544 CKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEP 603
Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
GCSSIE++G IH+FL+G+++HP+ +++Y KL E++ +LKS GY P S +LQ++EEE+++
Sbjct: 604 GCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMK 663
Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
EQ+LNLHSE+LAI YGLIS E + IR++KNLRVCGDCH+VAKLIS+LY+REI++RDRYR
Sbjct: 664 EQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYR 723
Query: 641 FHHFRGGNCSCMDYW 655
FHHFR G CSC D+W
Sbjct: 724 FHHFRNGQCSCNDFW 738
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/623 (43%), Positives = 403/623 (64%), Gaps = 15/623 (2%)
Query: 35 QHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSS-LEYARE 93
+H+ + S +++C ++LKQIH +ML+TGL D Y+ +K + C T S L YA+
Sbjct: 11 EHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQI 70
Query: 94 MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS-PYFPNEFTFPFVIKAAARL 152
+FD +P+ + WN +IR +S S EP +S +++ +++ +S P+ N +TFP ++KA + L
Sbjct: 71 VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPH--NAYTFPSLLKACSNL 128
Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
F IH + K +E+D++ NSLI+ YA+ G+ +A+ +F I + D VSWNS+I
Sbjct: 129 SAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVI 188
Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
G+V+ G + A+ L+R+M +N + + A K EAL +FHE+
Sbjct: 189 KGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNK----------EALQLFHEM 238
Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
Q S +V PD + + LSACAQLGA++ G IH+ + K I+++ L LIDMY KCG
Sbjct: 239 QNS-DVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGE 297
Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
+++ALEVF +K + V W+ +I+G+A +G GREA+ F MQ+ +KPN +TFT VL A
Sbjct: 298 MEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTA 357
Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
CS++GLV+EG++ F ME Y + P ++HY C+VD+LGRAGLLDEA FI++MP+ P A
Sbjct: 358 CSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAV 417
Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
+WGALL AC+IH+N+EL E L+ ++P + G V +NI+A KWD +E R+ M+
Sbjct: 418 IWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMK 477
Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
G+ K PGCS+I + G H+FLAG+ SHP ++I SK + +L+ GYVP +L
Sbjct: 478 EQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLL 537
Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
+ ++D +E ++ HSE+LAI YGLI +P IRI+KNLRVC DCH V KLISK+Y R+
Sbjct: 538 DLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRD 597
Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
I++RDR RFHHFR G CSC DYW
Sbjct: 598 IVMRDRTRFHHFRDGKCSCGDYW 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 519 bits (1336), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/633 (40%), Positives = 402/633 (63%), Gaps = 30/633 (4%)
Query: 41 VFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTF--SSLEYAREMFDQI 98
+F I C+ I+ L QIH +++G D +A+++ CA L+YA ++F+Q+
Sbjct: 26 LFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQM 85
Query: 99 PQPNLYTWNTLIRAYSSSAE--PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFR 156
PQ N ++WNT+IR +S S E + + +F +++ + PN FTFP V+KA A+ + +
Sbjct: 86 PQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQ 145
Query: 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF----------VMIGKK--- 203
G+ IHG+ +K F D F+ ++L+ Y +CG + A +F VM ++
Sbjct: 146 EGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRD 205
Query: 204 -DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
++V WN MI G+++ G + A L+ +M +V V+ ++S + +
Sbjct: 206 GEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSV----VSWNTMISGYS------LNGFF 255
Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
+A+ +F E++ ++ P+ T VSVL A ++LG++++G +H + GI+++ L ++
Sbjct: 256 KDAVEVFREMK-KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSA 314
Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
LIDMY+KCG ++KA+ VF + +V WS MI GFA++G +A+D F +M++A V+P+
Sbjct: 315 LIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 374
Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
V + N+L ACSH GLV+EGR +F+QM V G+ P ++HY CMVD+LGR+GLLDEA EFI
Sbjct: 375 DVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI 434
Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
MPI P +W ALLGAC++ NVE+ + + L+++ P + GA V LSN+YA G W
Sbjct: 435 LNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWS 494
Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
VSE+R M+ ++K+PGCS I+++G +H+F+ + SHP KEI S L EI +L+ G
Sbjct: 495 EVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAG 554
Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
Y P + +L +EEED +E L+ HSE++A A+GLIS P +PIRIVKNLR+C DCH+
Sbjct: 555 YRPITTQVLLNLEEED-KENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSI 613
Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
KLISK+Y R+I +RDR RFHHF+ G+CSCMDYW
Sbjct: 614 KLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 517 bits (1332), Expect = e-146, Method: Compositional matrix adjust.
Identities = 295/749 (39%), Positives = 421/749 (56%), Gaps = 103/749 (13%)
Query: 1 MTDNPPQHMETLSTPVISLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQ 60
M P + + S P LP +P ++ N HP SL+ CK ++ L+ IH Q
Sbjct: 2 MLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRN------HPSLSLLHNCKTLQSLRIIHAQ 55
Query: 61 MLRTGLFFDPYSASKLFTPCALGT-FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEP 119
M++ GL Y+ SKL C L F L YA +F I +PNL WNT+ R ++ S++P
Sbjct: 56 MIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDP 115
Query: 120 IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNS 179
+ + +++ ++ + PN +TFPFV+K+ A+ F+ GQ IHG V+K + DL++ S
Sbjct: 116 VSALKLYVCMI-SLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTS 174
Query: 180 LIHFYAICGDLAMAYCVFVM-------------------------------IGKKDVVSW 208
LI Y G L A+ VF I KDVVSW
Sbjct: 175 LISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSW 234
Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMV------------------------ 244
N+MISG+ + G +++A+EL+++M NV+PDE TMV
Sbjct: 235 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD 294
Query: 245 -----------AVLSACAKKRDLE-----FGRWP--------------------NEALSI 268
A++ +K +LE F R P EAL +
Sbjct: 295 HGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLL 354
Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK--QGIKLNCYLTTSLIDM 326
F E+ L P++ T +S+L ACA LGA+DIG IH + K +G+ L TSLIDM
Sbjct: 355 FQEM-LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDM 413
Query: 327 YTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386
Y KCG+++ A +VF+++ + + W+ MI GFAM+G + DLFSRM++ ++P+ +TF
Sbjct: 414 YAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITF 473
Query: 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
+L ACSHSG++D GR F M Y + P ++HY CM+D+LG +GL EA E I M
Sbjct: 474 VGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMME 533
Query: 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506
+ P +W +LL ACK+H NVEL E +L+++EPEN G+ VLLSNIYA G+W+ V++
Sbjct: 534 MEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAK 593
Query: 507 LRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPN 566
R + G+KK PGCSSIE++ +H+F+ G+ HP +EIY L+E+ L+ G+VP+
Sbjct: 594 TRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPD 653
Query: 567 RSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLIS 626
S +LQ +EEE +E AL HSE+LAIA+GLIS +P + IVKNLRVC +CH KLIS
Sbjct: 654 TSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLIS 712
Query: 627 KLYNREILLRDRYRFHHFRGGNCSCMDYW 655
K+Y REI+ RDR RFHHFR G CSC DYW
Sbjct: 713 KIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust.
Identities = 264/623 (42%), Positives = 393/623 (63%), Gaps = 19/623 (3%)
Query: 39 HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL-GTFSS----LEYARE 93
HP +L++ C + LK IH +LRT L D + AS+L C TF+ L YA
Sbjct: 13 HPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYG 72
Query: 94 MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
+F QI PNL+ +N LIR +S+ AEP ++F + Q++ S +P+ TFPF+IKA++ +
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQML-KSRIWPDNITFPFLIKASSEME 131
Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
VG+ H +++ F++D+++ NSL+H YA CG +A A +F +G +DVVSW SM++
Sbjct: 132 CVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVA 191
Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
G+ + G E A E++ EM N+ T +++ AK E +A+ +F E
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNL----FTWSIMINGYAKNNCFE------KAIDLF-EFM 240
Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
+ V +E VSV+S+CA LGA++ G + + + K + +N L T+L+DM+ +CG++
Sbjct: 241 KREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDI 300
Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
+KA+ VF + D WS++I G A++G +A+ FS+M P VTFT VL AC
Sbjct: 301 EKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSAC 360
Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
SH GLV++G + M+ +G+ P ++HY C+VDMLGRAG L EA FI KM + P A +
Sbjct: 361 SHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPI 420
Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
GALLGACKI++N E+AE + L++++PE+ G VLLSNIYA G+WD + LR M+
Sbjct: 421 LGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKE 480
Query: 514 SGLKKEPGCSSIEVNGEIHKFLAGES-SHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQ 572
+KK PG S IE++G+I+KF G+ HP +I K +EI+ +++ GY N
Sbjct: 481 KLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFF 540
Query: 573 LVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
V+EE+ +E ++++HSE+LAIAYG++ +P IRIVKNLRVC DCHTV KLIS++Y RE
Sbjct: 541 DVDEEE-KESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRE 599
Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
+++RDR RFHHFR G CSC DYW
Sbjct: 600 LIVRDRNRFHHFRNGVCSCRDYW 622
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/610 (40%), Positives = 374/610 (61%), Gaps = 47/610 (7%)
Query: 50 NIKQLKQIHTQMLRTGLFFDPYSASK--LFTPCALGTFSSLEYAREMFDQIPQP-NLYTW 106
+I +L+QIH +R G+ K +F +L + + YA ++F +I +P N++ W
Sbjct: 29 SITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIW 88
Query: 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166
NTLIR Y+ I +F ++ ++ + P+ T+PF+IKA + R+G+ IH +VI
Sbjct: 89 NTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVI 148
Query: 167 KSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226
+S F +++ NSL+H YA CGD+A AY VF + +KD+V+WNS+I+GF + G
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENG------- 201
Query: 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV 286
P EAL+++ E+ SK + PD FT V
Sbjct: 202 ----------------------------------KPEEALALYTEMN-SKGIKPDGFTIV 226
Query: 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346
S+LSACA++GA+ +G ++H M K G+ N + + L+D+Y +CG +++A +F + +
Sbjct: 227 SLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK 286
Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVDEGRMF 405
+ W+++I G A+ G G+EA++LF M+ + + P +TF +L ACSH G+V EG +
Sbjct: 287 NSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEY 346
Query: 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465
F +M Y + P ++H+ CMVD+L RAG + +A E+I+ MP+ P +W LLGAC +H
Sbjct: 347 FRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406
Query: 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSI 525
+ +LAE+A +L+LEP + G VLLSN+YA +W +V ++RK M G+KK PG S +
Sbjct: 407 DSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLV 466
Query: 526 EVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALN 585
EV +H+FL G+ SHP IY+KL E+ RL+S GYVP S++ VEEE+ +E A+
Sbjct: 467 EVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEE-KENAVV 525
Query: 586 LHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645
HSE++AIA+ LIS PI +VKNLRVC DCH KL+SK+YNREI++RDR RFHHF+
Sbjct: 526 YHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFK 585
Query: 646 GGNCSCMDYW 655
G+CSC DYW
Sbjct: 586 NGSCSCQDYW 595
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 488 bits (1255), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/656 (39%), Positives = 388/656 (59%), Gaps = 69/656 (10%)
Query: 19 LPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFT 78
+P +P+ T N HQ +FSL + C ++ QLKQ+H LRT P + LF
Sbjct: 33 IPPASSPSASTAGNHHQR----IFSLAETCSDMSQLKQLHAFTLRTTY---PEEPATLFL 85
Query: 79 PCAL----GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSS-AEPIQSFMIFLQLVYNS 133
+ +FS + YA +FD I + + WNTLIRA + + ++FM++ +++
Sbjct: 86 YGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERG 145
Query: 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMA 193
P++ TFPFV+KA A + F G+ +H ++K F D++++N LIH Y CG L +A
Sbjct: 146 ESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLA 205
Query: 194 YCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253
VF + ++ +VSWNSMI V+
Sbjct: 206 RKVFDEMPERSLVSWNSMIDALVR------------------------------------ 229
Query: 254 RDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-- 311
FG + + AL +F E+Q ++ PD +T SVLSACA LG++ +G HA + ++
Sbjct: 230 ----FGEY-DSALQLFREMQ--RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCD 282
Query: 312 -GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370
+ ++ + SLI+MY KCG+L A +VF ++ RD+ W+ MI GFA +G EA++
Sbjct: 283 VDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNF 342
Query: 371 FSRMQEAK--VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
F RM + + V+PN+VTF +L AC+H G V++GR +F+ M Y + P ++HY C+VD+
Sbjct: 343 FDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDL 402
Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC-KIHENVELAEYACSHLLELEPENH-- 485
+ RAG + EA++ + MP+ P A +W +LL AC K +VEL+E +++ + +N
Sbjct: 403 IARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESS 462
Query: 486 -----GALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS 540
GA VLLS +YA +W++V +RK M G++KEPGCSSIE+NG H+F AG++S
Sbjct: 463 NGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTS 522
Query: 541 HPLCKEIYSKLDEIVARLKSFGYVPNRSHL-LQLVEEEDVQEQALNLHSERLAIAYGLIS 599
HP K+IY +L I RL+S GY+P+RS L + +E +L LHSERLAIA+GLI+
Sbjct: 523 HPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLIN 582
Query: 600 VEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
+ P PIRI KNLRVC DCH V KLISK++N EI++RDR RFHHF+ G+CSC+DYW
Sbjct: 583 LPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 485 bits (1248), Expect = e-136, Method: Compositional matrix adjust.
Identities = 247/618 (39%), Positives = 383/618 (61%), Gaps = 13/618 (2%)
Query: 39 HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
HP +L+ K+++QIH ++ G D + AL L+YA ++ D+
Sbjct: 7 HPAIALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRS 66
Query: 99 PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF-PNEFTFPFVIKAAARLVQFRV 157
+P L+ N++IRA+ S P +SF + +++ + P+ +T F+++A L
Sbjct: 67 EKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRET 126
Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
G +HGM I+ F++D + LI YA G L + VF I D V +M++ +
Sbjct: 127 GLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACAR 186
Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
G A +L+ M + D + A++S A+ + EAL++FH +QL +
Sbjct: 187 CGDVVFARKLFEGMP----ERDPIAWNAMISGYAQVGE------SREALNVFHLMQL-EG 235
Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
V + +SVLSAC QLGA+D G H+ +++ IK+ L T+L+D+Y KCG+++KA+
Sbjct: 236 VKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAM 295
Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
EVF ++ ++V+ WS+ + G AM G G + L+LFS M++ V PNAVTF +VL CS G
Sbjct: 296 EVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVG 355
Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
VDEG+ F+ M +G+ P ++HY C+VD+ RAG L++AV I++MP+ P A+VW +L
Sbjct: 356 FVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSL 415
Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
L A ++++N+EL A +LELE NHGA VLLSNIYA + WDNVS +R+ M+ G++
Sbjct: 416 LHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVR 475
Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
K+PGCS +EVNGE+H+F G+ SHP +I + +I RL+ GY + + ++ ++EE
Sbjct: 476 KQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEE 535
Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
+ +E AL LHSE+ AIA+G++S++ PIRIVKNLRVCGDCH V+ +ISK++NREI++RD
Sbjct: 536 E-KEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRD 594
Query: 638 RYRFHHFRGGNCSCMDYW 655
R RFHHF+ G+CSC +W
Sbjct: 595 RNRFHHFKDGHCSCNGFW 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 254/657 (38%), Positives = 378/657 (57%), Gaps = 41/657 (6%)
Query: 35 QHHPHPVFSLIKQC----KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEY 90
Q P L+ Q +I+ L+ +H++++ L + KL A + +
Sbjct: 35 QKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMR--AYASLKDVAS 92
Query: 91 AREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA 150
AR++FD+IP+ N+ N +IR+Y ++ + +F + P+ +TFP V+KA +
Sbjct: 93 ARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMC-GCNVRPDHYTFPCVLKACS 151
Query: 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNS 210
+G+ IHG K LF+ N L+ Y CG L+ A V + ++DVVSWNS
Sbjct: 152 CSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNS 211
Query: 211 MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK--------RDLEF--GR 260
++ G+ Q F+ A+E+ REME + D TM ++L A + +D+ F G+
Sbjct: 212 LVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGK 271
Query: 261 -----W------------PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303
W P EA+ ++ ++ + PD + SVL AC A+ +G +
Sbjct: 272 KSLVSWNVMIGVYMKNAMPVEAVELYSRME-ADGFEPDAVSITSVLPACGDTSALSLGKK 330
Query: 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363
IH ++++ + N L +LIDMY KCG L+KA +VF +KSRDV W+ MI+ + G
Sbjct: 331 IHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGR 390
Query: 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423
G +A+ LFS++Q++ + P+++ F L ACSH+GL++EGR F M Y + P ++H
Sbjct: 391 GCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLA 450
Query: 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483
CMVD+LGRAG + EA FI+ M + P VWGALLGAC++H + ++ A L +L PE
Sbjct: 451 CMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPE 510
Query: 484 NHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPL 543
G VLLSNIYAK G+W+ V+ +R M+ GLKK PG S++EVN IH FL G+ SHP
Sbjct: 511 QSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQ 570
Query: 544 CKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISV--- 600
EIY +LD +V ++K GYVP+ L VEEED +E L +HSE+LAI + L++
Sbjct: 571 SDEIYRELDVLVKKMKELGYVPDSESALHDVEEED-KETHLAVHSEKLAIVFALMNTKEE 629
Query: 601 --EPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
+ + IRI KNLR+CGDCH AKLIS++ +REI++RD RFH FR G CSC DYW
Sbjct: 630 EEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 469 bits (1208), Expect = e-131, Method: Compositional matrix adjust.
Identities = 254/647 (39%), Positives = 391/647 (60%), Gaps = 21/647 (3%)
Query: 13 STPVI--SLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
S+P++ SLP++ TT T P + LI + +++ ++ QIH +LR L P
Sbjct: 3 SSPLLATSLPQNQLSTTATARF-RLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHP 61
Query: 71 -YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129
Y L A + + ++ +F Q P+L+ + I S + Q+F++++QL
Sbjct: 62 RYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQL 121
Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
+ +S PNEFTF ++K+ + + G+ IH V+K D +++ L+ YA GD
Sbjct: 122 L-SSEINPNEFTFSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGD 176
Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
+ A VF + ++ +VS +MI+ + + G E A L+ M + D V+ ++
Sbjct: 177 VVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSM----CERDIVSWNVMIDG 232
Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
A+ +PN+AL +F +L PDE T V+ LSAC+Q+GA++ G IH +K
Sbjct: 233 YAQHG------FPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVK 286
Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
I+LN + T LIDMY+KCG+L++A+ VF+ +D+ W+ MIAG+AM+G ++AL
Sbjct: 287 SSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALR 346
Query: 370 LFSRMQE-AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
LF+ MQ ++P +TF L AC+H+GLV+EG F M YG+ P ++HY C+V +
Sbjct: 347 LFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSL 406
Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488
LGRAG L A E I+ M + + +W ++LG+CK+H + L + +L+ L +N G
Sbjct: 407 LGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIY 466
Query: 489 VLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIY 548
VLLSNIYA G ++ V+++R M+ G+ KEPG S+IE+ ++H+F AG+ H KEIY
Sbjct: 467 VLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIY 526
Query: 549 SKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRI 608
+ L +I R+KS GYVPN + +LQ +EE + +EQ+L +HSERLAIAYGLIS +P P++I
Sbjct: 527 TMLRKISERIKSHGYVPNTNTVLQDLEETE-KEQSLQVHSERLAIAYGLISTKPGSPLKI 585
Query: 609 VKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
KNLRVC DCHTV KLISK+ R+I++RDR RFHHF G+CSC D+W
Sbjct: 586 FKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 655 | ||||||
| 297745917 | 652 | unnamed protein product [Vitis vinifera] | 0.896 | 0.900 | 0.580 | 0.0 | |
| 147840590 | 694 | hypothetical protein VITISV_032470 [Viti | 0.887 | 0.837 | 0.6 | 0.0 | |
| 224106277 | 738 | predicted protein [Populus trichocarpa] | 0.885 | 0.785 | 0.598 | 0.0 | |
| 225434622 | 743 | PREDICTED: pentatricopeptide repeat-cont | 0.909 | 0.802 | 0.576 | 0.0 | |
| 449455158 | 733 | PREDICTED: pentatricopeptide repeat-cont | 0.858 | 0.766 | 0.549 | 0.0 | |
| 297822703 | 740 | predicted protein [Arabidopsis lyrata su | 0.914 | 0.809 | 0.505 | 1e-180 | |
| 356502930 | 780 | PREDICTED: pentatricopeptide repeat-cont | 0.906 | 0.761 | 0.510 | 1e-178 | |
| 15227619 | 738 | pentatricopeptide repeat-containing prot | 0.914 | 0.811 | 0.495 | 1e-177 | |
| 395146511 | 850 | hypothetical protein [Linum usitatissimu | 0.893 | 0.688 | 0.507 | 1e-175 | |
| 225423499 | 738 | PREDICTED: pentatricopeptide repeat-cont | 0.937 | 0.831 | 0.433 | 1e-164 |
| >gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/698 (58%), Positives = 477/698 (68%), Gaps = 111/698 (15%)
Query: 16 VISLPRH-----PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
++SLPR PNP ++T+NN HP SLI QC KQLKQIH QMLRTGLFFDP
Sbjct: 8 LVSLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDP 67
Query: 71 YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
+SAS+L T AL F SL+YA+++FDQIP PNLYTWNTLIRAY+SS+ P QS +IFL+++
Sbjct: 68 FSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRML 127
Query: 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
+ SP FP++FTFPF+IKAA+ L + G+A HGMVIK D+FI NSLIHFYA CG+L
Sbjct: 128 HQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGEL 187
Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
+ Y VFV I ++DVVSWNSMI+ FVQGG E+A+EL++EME +N M+ + + C
Sbjct: 188 GLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNSLTLSNAMLDMYTKC 247
Query: 251 AKKRDL-----------------------------------------EFGRW-------- 261
D + W
Sbjct: 248 GSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYE 307
Query: 262 ----PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317
P EAL +FHELQLSK PDE T KQG+KLNC
Sbjct: 308 QCGKPKEALELFHELQLSKTAKPDEVTL------------------------KQGMKLNC 343
Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
+LTTSLIDMY KCG+L KAL VFH+V+ +DVFVWS MIAG AM+G G++A+ LFS+MQE
Sbjct: 344 HLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQED 403
Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
KVKPNAVTFTN+LCACSH GLV+EGR FFNQME VYG
Sbjct: 404 KVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYG----------------------- 440
Query: 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
KMP+ P ASVWGALLGAC IHENV LAE ACS L+ELEP NHGA VLLSNIYAK
Sbjct: 441 ------KMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAK 494
Query: 498 TGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVAR 557
GKWD VS LRK MR GLKKEPGCSSIEV+G +H+FL G++SHP K+IY+KLDEIVAR
Sbjct: 495 AGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVAR 554
Query: 558 LKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGD 617
L++ GYVPN+SHLLQLVEEEDV+EQAL LHSE+LAIA+GLIS SQPIRIVKNLRVCGD
Sbjct: 555 LETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGD 614
Query: 618 CHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
CH+VAKL+SKLY+REILLRDRYRFHHFR G+CSCMDYW
Sbjct: 615 CHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 652
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/640 (60%), Positives = 470/640 (73%), Gaps = 59/640 (9%)
Query: 16 VISLPRH-----PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
++SLPR PNP ++T+NN HP SLI QC KQLKQIH QMLRTGLFFDP
Sbjct: 8 LVSLPRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDP 67
Query: 71 YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130
+SAS+L T AL F SL+YA+++FDQIP PNLYTWNTLIRAY+SS+ P QS +IFL+++
Sbjct: 68 FSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRML 127
Query: 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190
+ SP FP++FTFPF+IKAA+ L + G+A HGMVIK D+FI NSLIHFYA CG+L
Sbjct: 128 HQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGEL 187
Query: 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSAC 250
+ Y VFV ++DVVSWNSMI+ FVQGG C
Sbjct: 188 GLGYRVFVNXPRRDVVSWNSMITAFVQGG------------------------------C 217
Query: 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK 310
P EAL +F E++ ++NV P+ T V VLSACA+ + G +H+ +++
Sbjct: 218 -----------PEEALELFQEME-TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIER 265
Query: 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA----------- 359
I + L+ +++DMYTKCG+++ A +F + +D+ W+TM+ G+A
Sbjct: 266 NRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGL 325
Query: 360 -MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
M+G G++A+ LFS+MQE KVKPNAVTFTN+LCACSH GLV+EGR FFNQME VYGV+PG
Sbjct: 326 AMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPG 385
Query: 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL 478
VKHY CMVD+LGRAGLL+EAVE IEKMP+ P ASVWGALLGAC IHENV LAE ACS L+
Sbjct: 386 VKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLI 445
Query: 479 ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGE 538
ELEP NHGA VLLSNIYAK GKWD VS LRK MR GLKKEPGCSSIEV+G +H+FL G+
Sbjct: 446 ELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGD 505
Query: 539 SSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLI 598
+SHP K+IY+KLDEIVARL++ GYVPN+SHLLQLVEEEDV+EQAL LHSE+LAIA+GLI
Sbjct: 506 NSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLI 565
Query: 599 SVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDR 638
S SQPIRIVKNLRVCGDCH+VAKL+SKLY+REILLRDR
Sbjct: 566 STGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDR 605
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa] gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/595 (59%), Positives = 443/595 (74%), Gaps = 15/595 (2%)
Query: 65 GLFFDPYSASKLFTPCALGTFSS----LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120
G+ S LF +L F S L+ A +F +I + ++ +WN++I + P
Sbjct: 155 GMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPE 214
Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
++ +F ++ + PN T V+ A A+ + G+ + ++ + +L +SN++
Sbjct: 215 EALQLFKRMKMENAR-PNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAM 273
Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
+ Y CG L A +F + +KD+VSW +MI G+ + G ++ A ++ M E++
Sbjct: 274 LDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDI---- 329
Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
A++S+ + G+ P EAL+IF ELQL+KN P+E T S L+ACAQLGAMD+
Sbjct: 330 TAWNALISSYQQN-----GK-PKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDL 383
Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
G IH +KKQGIKLN ++TTSLIDMY+KCG+L+KALEVF++V+ RDVFVWS MIAG AM
Sbjct: 384 GGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAM 443
Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420
+G GR A+DLFS+MQE KVKPNAVTFTN+LCACSHSGLVDEGR+FFNQM PVYGVVPG K
Sbjct: 444 HGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSK 503
Query: 421 HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480
HY CMVD+LGRAG L+EAVE IEKMPIVP ASVWGALLGAC+I+ NVELAE ACS LLE
Sbjct: 504 HYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLET 563
Query: 481 EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESS 540
+ NHGA VLLSNIYAK GKWD VS LR+HM+VSGL+KEPGCSSIEVNG IH+FL G++S
Sbjct: 564 DSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNS 623
Query: 541 HPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISV 600
HPL EIYSKLDEIVAR+KS GYV + SHLLQ VEEE ++E ALNLHSE+LAIAYGLI +
Sbjct: 624 HPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRM 683
Query: 601 EPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
EPSQPIRIVKNLRVCGDCH+VAKLISKLYNR+ILLRDRYRFHHF GGNCSCMDYW
Sbjct: 684 EPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/618 (57%), Positives = 446/618 (72%), Gaps = 22/618 (3%)
Query: 44 LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQ 97
LIK +++L K H +++ L D + + L + C L +F
Sbjct: 142 LIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCG-----ELGLGYRVFVN 196
Query: 98 IPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157
IP+ ++ +WN++I A+ P ++ +F Q + PN T V+ A A+ F
Sbjct: 197 IPRRDVVSWNSMITAFVQGGCPEEALELF-QEMETQNVKPNGITMVGVLSACAKKSDFEF 255
Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
G+ +H + ++ + L +SN+++ Y CG + A +F + +KD+VSW +M+ G+ +
Sbjct: 256 GRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAK 315
Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
G ++ A ++ M +++ +++ C K P EAL +FHELQLSK
Sbjct: 316 IGEYDAAQGIFDAMPNQDIAAWN-ALISAYEQCGK---------PKEALELFHELQLSKT 365
Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
PDE T VS LSACAQLGAMD+G IH +KKQG+KLNC+LTTSLIDMY KCG+L KAL
Sbjct: 366 AKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKAL 425
Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
VFH+V+ +DVFVWS MIAG AM+G G++A+ LFS+MQE KVKPNAVTFTN+LCACSH G
Sbjct: 426 MVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVG 485
Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
LV+EGR FFNQME VYGV+PGVKHY CMVD+LGRAGLL+EAVE IEKMP+ P ASVWGAL
Sbjct: 486 LVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGAL 545
Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
LGAC IHENV LAE ACS L+ELEP NHGA VLLSNIYAK GKWD VS LRK MR GLK
Sbjct: 546 LGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLK 605
Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577
KEPGCSSIEV+G +H+FL G++SHP K+IY+KLDEIVARL++ GYVPN+SHLLQLVEEE
Sbjct: 606 KEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEE 665
Query: 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
DV+EQAL LHSE+LAIA+GLIS SQPIRIVKNLRVCGDCH+VAKL+SKLY+REILLRD
Sbjct: 666 DVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRD 725
Query: 638 RYRFHHFRGGNCSCMDYW 655
RYRFHHFR G+CSCMDYW
Sbjct: 726 RYRFHHFREGHCSCMDYW 743
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis sativus] gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis sativus] gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/573 (54%), Positives = 417/573 (72%), Gaps = 11/573 (1%)
Query: 83 GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
G L A +F I ++ +WN++I A++ P + +FL++ + PN T
Sbjct: 172 GACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMEREN-VMPNSVTM 230
Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK 202
V+ A A+ + G+ + + + + DL + N+++ Y CG + A +F + +
Sbjct: 231 VGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPE 290
Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
+DV SW M+ G+ + G ++ A ++ M ++ + V + A E P
Sbjct: 291 RDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAY----------EQNGKP 340
Query: 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTS 322
EAL+IF+ELQLSK PDE T VS LSACAQLGA+D+G IH +K++GI LNC+L +S
Sbjct: 341 KEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISS 400
Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN 382
L+DMY KCG+L+KALEVF++V+ RDV+VWS MIAG M+G G+ A+DLF MQEAKVKPN
Sbjct: 401 LVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPN 460
Query: 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442
+VTFTNVLCACSH+GLVDEGR+FF++MEPVYGVVP +KHY CMVD+LGRAG L+EA+E I
Sbjct: 461 SVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELI 520
Query: 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502
+M P ASVWGALLGAC +H NVEL E A LL+LEP NHGA+VLLSNIYAKTG+W+
Sbjct: 521 NEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWE 580
Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFG 562
VSELRK MR + LKKEPGCSSIE NG +H+FL G+++HPL IYSKL+EI +LKS G
Sbjct: 581 KVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVG 640
Query: 563 YVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVA 622
Y PN+SHLLQL+EE+D++EQAL+LHSE+LAIA+GL+++ PSQPIR+VKNLR+CGDCH A
Sbjct: 641 YEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFA 700
Query: 623 KLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
KL+S++Y+R+ILLRDRYRFHHFR G+CSCMDYW
Sbjct: 701 KLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1649), Expect = e-180, Method: Compositional matrix adjust.
Identities = 311/615 (50%), Positives = 431/615 (70%), Gaps = 16/615 (2%)
Query: 44 LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
LIK + L + +H +++ + D + A+ L C + L+ A ++F I +
Sbjct: 139 LIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIH-CYF-SCGDLDSACKVFTTIKE 196
Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
++ +WN++I + P ++ +F ++ + + T V+ A A++ G+
Sbjct: 197 KDVVSWNSMINGFVQKGSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRDLEFGRR 255
Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
+ + ++ +L ++N+++ Y CG + A +F + +KD V+W +M+ G+
Sbjct: 256 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 315
Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
+E A E+ M K D V A++SA E PNEAL +FHELQL KN+
Sbjct: 316 YEAAREVLNAMP----KKDIVAWNALISA------YEQNGKPNEALLVFHELQLQKNIKL 365
Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
++ T VS LSACAQ+GA+++G IH+ +KK GIK+N Y+T++LI MY+KCG+L+KA EVF
Sbjct: 366 NQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVF 425
Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
++V+ RDVFVWS MI G AM+GCG EA+D+F +MQEA VKPN VTFTNV CACSH+GLVD
Sbjct: 426 NSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 485
Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
E F +ME YG+VP KHY C+VD+LGR+G L++AV+FIE MPI P SVWGALLGA
Sbjct: 486 EAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 545
Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
CKIH N+ LAE AC+ LLELEP N GA VLLSNIYAK+GKWDNVSELRKHMRV+GLKKEP
Sbjct: 546 CKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEP 605
Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
GCSSIE++G IH+FL+G+++HP+ +++Y KL E++ +LKS GY P SH+LQ++EEE+++
Sbjct: 606 GCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMK 665
Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
EQ+LNLHSE+LAI YGLIS E + IR++KNLR+CGDCH VAKLIS+LYNREI++RDRYR
Sbjct: 666 EQSLNLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYR 725
Query: 641 FHHFRGGNCSCMDYW 655
FHHFR G CSC D+W
Sbjct: 726 FHHFRNGQCSCNDFW 740
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 313/613 (51%), Positives = 419/613 (68%), Gaps = 19/613 (3%)
Query: 49 KNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL----GTFSSLEYAREMFDQIPQPNLY 104
K +LK +H + G+ +S LF +L G+ + + A +F +P ++
Sbjct: 181 KAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVV 240
Query: 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGM 164
+WN +I A++ P ++ ++F ++ PN T V+ A A+ + G+ I
Sbjct: 241 SWNAMINAFALGGLPDKALLLFQEMEMKDVK-PNVITMVSVLSACAKKIDLEFGRWICSY 299
Query: 165 VIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKA 224
+ + F + L ++N+++ Y CG + A +F + +KD+VSW +M+ G + G +++A
Sbjct: 300 IENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEA 359
Query: 225 IELYREMEMENVKPDEVTMV--AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
++ M P + T A++SA E P ALS+FHE+QLSK+ PDE
Sbjct: 360 HCIFDAM------PHKWTAAWNALISA------YEQNGKPRVALSLFHEMQLSKDAKPDE 407
Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
T + L A AQLGA+D G IH +KK I LNC+L TSL+DMY KCGNL+KA+EVFH
Sbjct: 408 VTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHA 467
Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
V+ +DV+VWS MI AMYG G+ ALDLFS M EA +KPNAVTFTN+LCAC+H+GLV+EG
Sbjct: 468 VERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEG 527
Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACK 462
F QMEP+YG+VP ++HY C+VD+ GRAGLL++A FIEKMPI P A+VWGALLGAC
Sbjct: 528 EQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACS 587
Query: 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGC 522
H NVELAE A +LLELEP NHGA VLLSNIYAK G W+ VS LRK MR S +KKEP C
Sbjct: 588 RHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWC 647
Query: 523 SSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQ 582
SSI+VNG +H+FL G++SHP ++IYSKLDEI + K GY P+ S+LLQL EE+++ EQ
Sbjct: 648 SSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQ 707
Query: 583 ALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFH 642
+LN+HSE+LAIA+GLIS SQPIRIVKN+R+CGDCH AKL+S+LY+R+ILLRDRYRFH
Sbjct: 708 SLNVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFH 767
Query: 643 HFRGGNCSCMDYW 655
HFRGG CSC+DYW
Sbjct: 768 HFRGGKCSCLDYW 780
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g29760, chloroplastic; Flags: Precursor gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana] gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 305/615 (49%), Positives = 432/615 (70%), Gaps = 16/615 (2%)
Query: 44 LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
LIK + L + +H +++ + D + A+ L C + L+ A ++F I +
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIH-CYF-SCGDLDSACKVFTTIKE 194
Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
++ +WN++I + P ++ +F ++ + + T V+ A A++ G+
Sbjct: 195 KDVVSWNSMINGFVQKGSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253
Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
+ + ++ +L ++N+++ Y CG + A +F + +KD V+W +M+ G+
Sbjct: 254 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313
Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
+E A E+ M +++ V A++SA E PNEAL +FHELQL KN+
Sbjct: 314 YEAAREVLNSMPQKDI----VAWNALISA------YEQNGKPNEALIVFHELQLQKNMKL 363
Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
++ T VS LSACAQ+GA+++G IH+ +KK GI++N ++T++LI MY+KCG+L+K+ EVF
Sbjct: 364 NQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423
Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
++V+ RDVFVWS MI G AM+GCG EA+D+F +MQEA VKPN VTFTNV CACSH+GLVD
Sbjct: 424 NSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 483
Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
E F+QME YG+VP KHY C+VD+LGR+G L++AV+FIE MPI P SVWGALLGA
Sbjct: 484 EAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 543
Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
CKIH N+ LAE AC+ LLELEP N GA VLLSNIYAK GKW+NVSELRKHMRV+GLKKEP
Sbjct: 544 CKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEP 603
Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ 580
GCSSIE++G IH+FL+G+++HP+ +++Y KL E++ +LKS GY P S +LQ++EEE+++
Sbjct: 604 GCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMK 663
Query: 581 EQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
EQ+LNLHSE+LAI YGLIS E + IR++KNLRVCGDCH+VAKLIS+LY+REI++RDRYR
Sbjct: 664 EQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYR 723
Query: 641 FHHFRGGNCSCMDYW 655
FHHFR G CSC D+W
Sbjct: 724 FHHFRNGQCSCNDFW 738
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 308/607 (50%), Positives = 424/607 (69%), Gaps = 22/607 (3%)
Query: 55 KQIHTQMLRTGLFFDPYSASKL---FTPCALGTFSSLEYAREMFDQIPQPN--LYTWNTL 109
K +H ++T D + + L + C L+ A +F+ I N + +WN++
Sbjct: 260 KAVHGMAIKTSFGDDVFVLNSLIHFYASCG-----HLDLAYLVFEMIEGNNKDIVSWNSM 314
Query: 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169
+ + P ++ +F + + N PN T V+ A A+ + +G+ + + ++
Sbjct: 315 VTGFVQGGYPDKALDLF-ERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNE 373
Query: 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYR 229
+L + N+ I + CG++ +A +F + K+DVVSW ++I G+ + A +++
Sbjct: 374 MMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFD 433
Query: 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN-VNPDEFTFVSV 288
M +++ V + + GR P EAL+IF ELQL+K+ PD+ T +S
Sbjct: 434 SMPRKDIPAWNVLISGYEQS---------GR-PKEALAIFRELQLTKSGARPDQVTLLST 483
Query: 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV 348
LSACAQLGAMDIG IH +KK+ I+LN L TSLIDMY+K G+++KA+EVFH++ ++DV
Sbjct: 484 LSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDV 543
Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408
FVWS MIAG AM+G G A++LF MQE +VKPN+VTFTN+LCACSHSGLVDEG+ F++
Sbjct: 544 FVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDE 603
Query: 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVE 468
ME VYGVVP KHY+CMVD+LGRAG L+EA++FIE MP+ P ASVWGALLGAC IH N+E
Sbjct: 604 MERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLE 663
Query: 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528
LAE ACS LLE+EP NHGA VLLSN+YAKTG W+ VSELR+ MR SGLKKE GCSSIE++
Sbjct: 664 LAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEID 723
Query: 529 GEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHS 588
G +H+F+ G+++HPL ++IY+KLDEI+ARL+S GYV N +LQ VEEE+++E+AL LHS
Sbjct: 724 GTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHS 783
Query: 589 ERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGN 648
E++AIA+GLI + Q IRIVKNLRVC DCHTVAK++SK+Y R+I+LRDRYRFHHF GG+
Sbjct: 784 EKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGH 843
Query: 649 CSCMDYW 655
CSC DYW
Sbjct: 844 CSCQDYW 850
|
Source: Linum usitatissimum Species: Linum usitatissimum Genus: Linum Family: Linaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 307/709 (43%), Positives = 429/709 (60%), Gaps = 95/709 (13%)
Query: 39 HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
HP +L+ CK+ + LKQIH+Q+++TGL ++ SKL CA+ F +L YA +F+ I
Sbjct: 33 HPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92
Query: 99 PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
QPN + WNT+IR S S+ P+ + +++++ PN +TFPF++K+ A++ + G
Sbjct: 93 EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLL-CGVEPNSYTFPFLLKSCAKVGATQEG 151
Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVM------------------- 199
+ IHG V+K E D F+ SLI+ YA G+L A VF
Sbjct: 152 KQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLR 211
Query: 200 ------------IGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247
I +D VSWN+MI+G+ Q G FE+A+ ++EM+ NV P+E TMV VL
Sbjct: 212 GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVL 271
Query: 248 SACA-----------------------------------------KKRDLEFG------- 259
SACA K RDL G
Sbjct: 272 SACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDII 331
Query: 260 RWP------------NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
W EAL++F ++Q S NV P++ TFVS+L ACA LGA+D+G IHA
Sbjct: 332 SWNVMIGGYSHMNSYKEALALFRKMQQS-NVEPNDVTFVSILPACAYLGALDLGKWIHAY 390
Query: 308 MKKQGIKL-NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366
+ K+ + L N L TSLIDMY KCGN++ A +VF +K + + W+ MI+G AM+G
Sbjct: 391 IDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANM 450
Query: 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426
AL+LF +M++ +P+ +TF VL ACSH+GLV+ GR F+ M Y + P ++HY CM+
Sbjct: 451 ALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMI 510
Query: 427 DMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486
D+LGRAGL DEA ++ M + P ++WG+LLGAC++H NVEL E+A HL ELEPEN G
Sbjct: 511 DLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPG 570
Query: 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKE 546
A VLLSNIYA G+WD+V+ +R + G+KK PGCSSIEV+ +H+FL G+ H ++
Sbjct: 571 AYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQD 630
Query: 547 IYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPI 606
IY LDEI L+ G+VP+ S +L ++EE +E +L+ HSE+LAIA+GLIS +P I
Sbjct: 631 IYKMLDEIDQLLEKAGHVPDTSEVLYDMDEE-WKEGSLSHHSEKLAIAFGLISTKPETTI 689
Query: 607 RIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
RIVKNLRVCG+CH+ KLISK++NREI+ RDR RFHHF+ G+CSCMDYW
Sbjct: 690 RIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 655 | ||||||
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.914 | 0.811 | 0.482 | 5.5e-157 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.928 | 0.980 | 0.431 | 3e-140 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.922 | 0.971 | 0.417 | 4e-129 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.926 | 0.939 | 0.401 | 6.6e-129 | |
| TAIR|locus:1009023396 | 612 | AT5G40405 "AT5G40405" [Arabido | 0.923 | 0.988 | 0.393 | 4.1e-120 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.955 | 0.990 | 0.383 | 2.7e-116 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.665 | 0.494 | 0.389 | 2.6e-115 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.847 | 0.968 | 0.404 | 6.4e-115 | |
| TAIR|locus:2167593 | 657 | AT5G44230 [Arabidopsis thalian | 0.969 | 0.966 | 0.370 | 7.6e-112 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.606 | 0.446 | 0.425 | 5.5e-111 |
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1530 (543.6 bits), Expect = 5.5e-157, P = 5.5e-157
Identities = 297/615 (48%), Positives = 418/615 (67%)
Query: 44 LIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ 100
LIK + L + +H +++ + D + A+ L C L+ A ++F I +
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIH-CYFSC-GDLDSACKVFTTIKE 194
Query: 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160
++ +WN++I + P ++ +F ++ + + T V+ A A++ G+
Sbjct: 195 KDVVSWNSMINGFVQKGSPDKALELFKKME-SEDVKASHVTMVGVLSACAKIRNLEFGRQ 253
Query: 161 IHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGF 220
+ + ++ +L ++N+++ Y CG + A +F + +KD V+W +M+ G+
Sbjct: 254 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313
Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
+E A E+ M +++ V A++SA + G+ PNEAL +FHELQL KN+
Sbjct: 314 YEAAREVLNSMPQKDI----VAWNALISAYEQN-----GK-PNEALIVFHELQLQKNMKL 363
Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340
++ T VS LSACAQ+GA+++G IH+ +KK GI++N ++T++LI MY+KCG+L+K+ EVF
Sbjct: 364 NQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423
Query: 341 HTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400
++V+ RDVFVWS MI G AM+GCG EA+D+F +MQEA VKPN VTFTNV CACSH+GLVD
Sbjct: 424 NSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 483
Query: 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGA 460
E F+QME YG+VP KHY C+VD+LGR+G L++AV+FIE MPI P SVWGALLGA
Sbjct: 484 EAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 543
Query: 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
CKIH N+ LAE AC+ LLELEP N GA VLLSNIYAK GKW+NVSELRKHMRV+GLKKEP
Sbjct: 544 CKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEP 603
Query: 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHXXXXXXXXXXX 580
GCSSIE++G IH+FL+G+++HP+ +++Y KL E++ +LKS GY P S
Sbjct: 604 GCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMK 663
Query: 581 XXXXNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYR 640
NLHSE+LAI YGLIS E + IR++KNLRVCGDCH+VAKLIS+LY+REI++RDRYR
Sbjct: 664 EQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYR 723
Query: 641 FHHFRGGNCSCMDYW 655
FHHFR G CSC D+W
Sbjct: 724 FHHFRNGQCSCNDFW 738
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1372 (488.0 bits), Expect = 3.0e-140, P = 3.0e-140
Identities = 269/623 (43%), Positives = 398/623 (63%)
Query: 35 QHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSS-LEYARE 93
+H+ + S +++C ++LKQIH +ML+TGL D Y+ +K + C T S L YA+
Sbjct: 11 EHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQI 70
Query: 94 MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS-PYFPNEFTFPFVIKAAARL 152
+FD +P+ + WN +IR +S S EP +S +++ +++ +S P+ N +TFP ++KA + L
Sbjct: 71 VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPH--NAYTFPSLLKACSNL 128
Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212
F IH + K +E+D++ NSLI+ YA+ G+ +A+ +F I + D VSWNS+I
Sbjct: 129 SAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVI 188
Query: 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272
G+V+ G + A+ L+R+M +N ++ ++S + D+ EAL +FHE+
Sbjct: 189 KGYVKAGKMDIALTLFRKMAEKNA----ISWTTMISGYVQA-DMN-----KEALQLFHEM 238
Query: 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332
Q S +V PD + + LSACAQLGA++ G IH+ + K I+++ L LIDMY KCG
Sbjct: 239 QNS-DVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGE 297
Query: 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392
+++ALEVF +K + V W+ +I+G+A +G GREA+ F MQ+ +KPN +TFT VL A
Sbjct: 298 MEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTA 357
Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGAS 452
CS++GLV+EG++ F ME Y + P ++HY C+VD+LGRAGLLDEA FI++MP+ P A
Sbjct: 358 CSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAV 417
Query: 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512
+WGALL AC+IH+N+EL E L+ ++P + G V +NI+A KWD +E R+ M+
Sbjct: 418 IWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMK 477
Query: 513 VSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHXXX 572
G+ K PGCS+I + G H+FLAG+ SHP ++I SK + +L+ GYVP
Sbjct: 478 EQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLL 537
Query: 573 XXXXXXXXXXXXNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
+ HSE+LAI YGLI +P IRI+KNLRVC DCH V KLISK+Y R+
Sbjct: 538 DLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRD 597
Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
I++RDR RFHHFR G CSC DYW
Sbjct: 598 IVMRDRTRFHHFRDGKCSCGDYW 620
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
Identities = 260/623 (41%), Positives = 384/623 (61%)
Query: 39 HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCAL-GTFSS----LEYARE 93
HP +L++ C + LK IH +LRT L D + AS+L C TF+ L YA
Sbjct: 13 HPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYG 72
Query: 94 MFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLV 153
+F QI PNL+ +N LIR +S+ AEP ++F + Q++ S +P+ TFPF+IKA++ +
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQML-KSRIWPDNITFPFLIKASSEME 131
Query: 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213
VG+ H +++ F++D+++ NSL+H YA CG +A A +F +G +DVVSW SM++
Sbjct: 132 CVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVA 191
Query: 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ 273
G+ + G E A E++ EM N+ T +++ AK E +A+ +F E
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNL----FTWSIMINGYAKNNCFE------KAIDLF-EFM 240
Query: 274 LSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL 333
+ V +E VSV+S+CA LGA++ G + + + K + +N L T+L+DM+ +CG++
Sbjct: 241 KREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDI 300
Query: 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393
+KA+ VF + D WS++I G A++G +A+ FS+M P VTFT VL AC
Sbjct: 301 EKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSAC 360
Query: 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV 453
SH GLV++G + M+ +G+ P ++HY C+VDMLGRAG L EA FI KM + P A +
Sbjct: 361 SHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPI 420
Query: 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513
GALLGACKI++N E+AE + L++++PE+ G VLLSNIYA G+WD + LR M+
Sbjct: 421 LGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKE 480
Query: 514 SGLKKEPGCSSIEVNGEIHKFLAGESS-HPLCKEIYSKLDEIVARLKSFGYVPNRSHXXX 572
+KK PG S IE++G+I+KF G+ HP +I K +EI+ +++ GY N
Sbjct: 481 KLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFF 540
Query: 573 XXXXXXXXXXXXNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNRE 632
++HSE+LAIAYG++ +P IRIVKNLRVC DCHTV KLIS++Y RE
Sbjct: 541 DVDEEEKESSI-HMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRE 599
Query: 633 ILLRDRYRFHHFRGGNCSCMDYW 655
+++RDR RFHHFR G CSC DYW
Sbjct: 600 LIVRDRNRFHHFRNGVCSCRDYW 622
|
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| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
Identities = 256/637 (40%), Positives = 393/637 (61%)
Query: 37 HPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFS--SLEYAREM 94
HP +F I C+ I+ L QIH +++G D +A+++ CA L+YA ++
Sbjct: 22 HPSSLFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKI 81
Query: 95 FDQIPQPNLYTWNTLIRAYSSSAEP--IQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARL 152
F+Q+PQ N ++WNT+IR +S S E + + +F +++ + PN FTFP V+KA A+
Sbjct: 82 FNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKT 141
Query: 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF----------VMIGK 202
+ + G+ IHG+ +K F D F+ ++L+ Y +CG + A +F VM +
Sbjct: 142 GKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDR 201
Query: 203 K----DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258
+ ++V WN MI G+++ G + A L+ +M +V TM++ S +D
Sbjct: 202 RKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWN-TMISGYSLNGFFKD--- 257
Query: 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
A+ +F E++ ++ P+ T VSVL A ++LG++++G +H + GI+++
Sbjct: 258 ------AVEVFREMKKG-DIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV 310
Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378
L ++LIDMY+KCG ++KA+ VF + +V WS MI GFA++G +A+D F +M++A
Sbjct: 311 LGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAG 370
Query: 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438
V+P+ V + N+L ACSH GLV+EGR +F+QM V G+ P ++HY CMVD+LGR+GLLDEA
Sbjct: 371 VRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEA 430
Query: 439 VEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498
EFI MPI P +W ALLGAC++ NVE+ + + L+++ P + GA V LSN+YA
Sbjct: 431 EEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQ 490
Query: 499 GKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARL 558
G W VSE+R M+ ++K+PGCS I+++G +H+F+ + SHP KEI S L EI +L
Sbjct: 491 GNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKL 550
Query: 559 KSFGYVPNRSHXXXXXXXXXXXXXXXNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDC 618
+ GY P + + HSE++A A+GLIS P +PIRIVKNLR+C DC
Sbjct: 551 RLAGYRPITTQVLLNLEEEDKENVL-HYHSEKIATAFGLISTSPGKPIRIVKNLRICEDC 609
Query: 619 HTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
H+ KLISK+Y R+I +RDR RFHHF+ G+CSCMDYW
Sbjct: 610 HSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
|
|
| TAIR|locus:1009023396 AT5G40405 "AT5G40405" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
Identities = 243/618 (39%), Positives = 373/618 (60%)
Query: 39 HPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI 98
HP +L+ K+++QIH ++ G D + AL L+YA ++ D+
Sbjct: 7 HPAIALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRS 66
Query: 99 PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN-SPYFPNEFTFPFVIKAAARLVQFRV 157
+P L+ N++IRA+ S P +SF + +++ + + P+ +T F+++A L
Sbjct: 67 EKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRET 126
Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
G +HGM I+ F++D + LI YA G L + VF I D V +M++ +
Sbjct: 127 GLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACAR 186
Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
G A +L+ M + D + A++S A + G EAL++FH +QL +
Sbjct: 187 CGDVVFARKLFEGMP----ERDPIAWNAMISGYA-----QVGE-SREALNVFHLMQL-EG 235
Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
V + +SVLSAC QLGA+D G H+ +++ IK+ L T+L+D+Y KCG+++KA+
Sbjct: 236 VKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAM 295
Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
EVF ++ ++V+ WS+ + G AM G G + L+LFS M++ V PNAVTF +VL CS G
Sbjct: 296 EVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVG 355
Query: 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457
VDEG+ F+ M +G+ P ++HY C+VD+ RAG L++AV I++MP+ P A+VW +L
Sbjct: 356 FVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSL 415
Query: 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517
L A ++++N+EL A +LELE NHGA VLLSNIYA + WDNVS +R+ M+ G++
Sbjct: 416 LHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVR 475
Query: 518 KEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHXXXXXXXX 577
K+PGCS +EVNGE+H+F G+ SHP +I + +I RL+ GY + +
Sbjct: 476 KQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEE 535
Query: 578 XXXXXXXNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD 637
LHSE+ AIA+G++S++ PIRIVKNLRVCGDCH V+ +ISK++NREI++RD
Sbjct: 536 EKEDALC-LHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRD 594
Query: 638 RYRFHHFRGGNCSCMDYW 655
R RFHHF+ G+CSC +W
Sbjct: 595 RNRFHHFKDGHCSCNGFW 612
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1146 (408.5 bits), Expect = 2.7e-116, P = 2.7e-116
Identities = 248/647 (38%), Positives = 381/647 (58%)
Query: 13 STPVI--SLPRHPNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLRTGLFFDP 70
S+P++ SLP++ TT T P + LI + +++ ++ QIH +LR L P
Sbjct: 3 SSPLLATSLPQNQLSTTATARF-RLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHP 61
Query: 71 -YSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129
Y L A + + ++ +F Q P+L+ + I S + Q+F++++QL
Sbjct: 62 RYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQL 121
Query: 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189
+ +S PNEFTF ++K+ + + G+ IH V+K D +++ L+ YA GD
Sbjct: 122 L-SSEINPNEFTFSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGD 176
Query: 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249
+ A VF + ++ +VS +MI+ + + G E A L+ M + D V+ ++
Sbjct: 177 VVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSM----CERDIVSWNVMIDG 232
Query: 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309
A + G +PN+AL +F +L PDE T V+ LSAC+Q+GA++ G IH +K
Sbjct: 233 YA-----QHG-FPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVK 286
Query: 310 KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369
I+LN + T LIDMY+KCG+L++A+ VF+ +D+ W+ MIAG+AM+G ++AL
Sbjct: 287 SSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALR 346
Query: 370 LFSRMQEAK-VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
LF+ MQ ++P +TF L AC+H+GLV+EG F M YG+ P ++HY C+V +
Sbjct: 347 LFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSL 406
Query: 429 LGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488
LGRAG L A E I+ M + + +W ++LG+CK+H + L + +L+ L +N G
Sbjct: 407 LGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIY 466
Query: 489 VLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIY 548
VLLSNIYA G ++ V+++R M+ G+ KEPG S+IE+ ++H+F AG+ H KEIY
Sbjct: 467 VLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIY 526
Query: 549 SKLDEIVARLKSFGYVPNRSHXXXXXXXXXXXXXXXNLHSERLAIAYGLISVEPSQPIRI 608
+ L +I R+KS GYVPN ++ +HSERLAIAYGLIS +P P++I
Sbjct: 527 TMLRKISERIKSHGYVPN-TNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKI 585
Query: 609 VKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
KNLRVC DCHTV KLISK+ R+I++RDR RFHHF G+CSC D+W
Sbjct: 586 FKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 853 (305.3 bits), Expect = 2.6e-115, Sum P(2) = 2.6e-115
Identities = 174/447 (38%), Positives = 262/447 (58%)
Query: 209 NSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268
N++I + + G +++++ M D VT V+SAC + D G L +
Sbjct: 447 NALIDMYAKCGEVGDSLKIFSSMGTG----DTVTWNTVISACVRFGDFATG------LQV 496
Query: 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328
+++ S+ V PD TF+ L CA L A +G +IH + + G + + +LI+MY+
Sbjct: 497 TTQMRKSEVV-PDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYS 555
Query: 329 KCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN 388
KCG L+ + VF + RDV W+ MI + MYG G +AL+ F+ M+++ + P++V F
Sbjct: 556 KCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIA 615
Query: 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
++ ACSHSGLVDEG F +M+ Y + P ++HY C+VD+L R+ + +A EFI+ MPI
Sbjct: 616 IIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIK 675
Query: 449 PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508
P AS+W ++L AC+ ++E AE ++EL P++ G +L SN YA KWD VS +R
Sbjct: 676 PDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIR 735
Query: 509 KHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRS 568
K ++ + K PG S IEV +H F +G+ S P + IY L+ + + + GY+P+
Sbjct: 736 KSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPR 795
Query: 569 HXXXXXXXXXXXXXXXNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKL 628
HSERLAIA+GL++ EP P++++KNLRVCGDCH V KLISK+
Sbjct: 796 EVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKI 855
Query: 629 YNREILLRDRYRFHHFRGGNCSCMDYW 655
REIL+RD RFH F+ G CSC D W
Sbjct: 856 VGREILVRDANRFHLFKDGTCSCKDRW 882
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 234/579 (40%), Positives = 345/579 (59%)
Query: 88 LEYAREMFDQIPQPNL--YTWNTLIRAYS---SSAEPIQSFMIFLQLVYNSPYFPNEFTF 142
+ YA +F I L + WN +IRA SS + ++L++ N P+ TF
Sbjct: 8 IAYANPIF-HIRHLKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRM-RNHRVSPDFHTF 65
Query: 143 PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK 202
PF++ + + +GQ H ++ + D F+ SL++ Y+ CGDL A VF G
Sbjct: 66 PFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGS 125
Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262
KD+ +WNS+++ + + G + A +L+ EM NV + +C + G++
Sbjct: 126 KDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNV---------ISWSCLINGYVMCGKY- 175
Query: 263 NEALSIFHELQLSK-N---VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318
EAL +F E+QL K N V P+EFT +VLSAC +LGA++ G +HA + K ++++
Sbjct: 176 KEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIV 235
Query: 319 LTTSLIDMYTKCGNLDKALEVFHTVKSR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
L T+LIDMY KCG+L++A VF+ + S+ DV +S MI AMYG E LFS M +
Sbjct: 236 LGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTS 295
Query: 378 -KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
+ PN+VTF +L AC H GL++EG+ +F M +G+ P ++HY CMVD+ GR+GL+
Sbjct: 296 DNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIK 355
Query: 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496
EA FI MP+ P +WG+LL ++ +++ E A L+EL+P N GA VLLSN+YA
Sbjct: 356 EAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYA 415
Query: 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVA 556
KTG+W V +R M V G+ K PGCS +EV G +H+F+ G+ S + IY+ LDEI+
Sbjct: 416 KTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQ 475
Query: 557 RLKSFGYVPNRSHXXXXXXXXXXXXXXXNLHSERLAIAYGLISVEPSQPIRIVKNLRVCG 616
RL+ GYV + + HSE+LAIA+ L+ P P+RI+KNLR+CG
Sbjct: 476 RLREAGYVTDTKEVLLDLNEKDKEIAL-SYHSEKLAIAFCLMKTRPGTPVRIIKNLRICG 534
Query: 617 DCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
DCH V K+ISKL++REI++RD RFHHFR G+CSC D+W
Sbjct: 535 DCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
|
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| TAIR|locus:2167593 AT5G44230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 244/658 (37%), Positives = 365/658 (55%)
Query: 6 PQHMETLSTPVISLPRHPNPT-TLT-VNNGHQHHPHPVFSLIKQCKNIKQLKQIHTQMLR 63
P ++ LS ++ L R N + T + ++N + + S + C N+ Q+KQIH +LR
Sbjct: 15 PINISLLSKQLLQLGRTSNNSGTFSEISNQKELLVSSLISKLDDCINLNQIKQIHGHVLR 74
Query: 64 TGLFFDPYSASKLF-TPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQS 122
GL Y +KL T LG YAR + + + N + W +IR Y+ + ++
Sbjct: 75 KGLDQSCYILTKLIRTLTKLGVPMD-PYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEA 133
Query: 123 FMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182
++ + P FTF ++KA + +G+ H + +++ N++I
Sbjct: 134 IAMY-GCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMID 192
Query: 183 FYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242
Y C + A VF + ++DV+SW +I+ + + G E A EL+ + + D V
Sbjct: 193 MYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTK----DMVA 248
Query: 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAM---D 299
A+++ A+ P EAL F ++ S + DE T +SACAQLGA D
Sbjct: 249 WTAMVTGFAQNAK------PQEALEYFDRMEKS-GIRADEVTVAGYISACAQLGASKYAD 301
Query: 300 IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFA 359
VQI A+ + + ++LIDMY+KCGN+++A+ VF ++ +++VF +S+MI G A
Sbjct: 302 RAVQI-AQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLA 360
Query: 360 MYGCGREALDLFSRM-QEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418
+G +EAL LF M + ++KPN VTF L ACSHSGLVD+GR F+ M +GV P
Sbjct: 361 THGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPT 420
Query: 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLL 478
HYTCMVD+LGR G L EA+E I+ M + P VWGALLGAC+IH N E+AE A HL
Sbjct: 421 RDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLF 480
Query: 479 ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCS-SIEVNGEIHKFLAG 537
ELEP+ G +LLSN+YA G W V +RK ++ GLKK P S ++ NG++HKF G
Sbjct: 481 ELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPG 540
Query: 538 ESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHXXXXXXXXXXXXXXXNLHSERLAIAYGL 597
+HP+ +I KL+E+V RL GY P+ S H+E+LA+A+ L
Sbjct: 541 NLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQ-HTEKLALAFSL 599
Query: 598 ISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
++ I I+KNLR+C DCH +L S++ + I++RD RFHHFR G+CSC D+W
Sbjct: 600 LTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 174/409 (42%), Positives = 250/409 (61%)
Query: 258 FGRWPNEALSIFHELQ-----LSK-----NVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307
F +AL + H++Q +SK ++ P+ T +++L +CA L A+ G +IHA
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAY 542
Query: 308 MKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREA 367
K + + + ++L+DMY KCG L + +VF + ++V W+ +I + M+G G+EA
Sbjct: 543 AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEA 602
Query: 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427
+DL M VKPN VTF +V ACSHSG+VDEG F M+P YGV P HY C+VD
Sbjct: 603 IDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVD 662
Query: 428 MLGRAGLLDEAVEFIEKMPI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486
+LGRAG + EA + + MP A W +LLGA +IH N+E+ E A +L++LEP
Sbjct: 663 LLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVAS 722
Query: 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKE 546
VLL+NIY+ G WD +E+R++M+ G++KEPGCS IE E+HKF+AG+SSHP ++
Sbjct: 723 HYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEK 782
Query: 547 IYSKLDEIVARLKSFGYVPNRSHXXXXXXXXXXXXXXXNLHSERLAIAYGLISVEPSQPI 606
+ L+ + R++ GYVP+ S HSE+LAIA+G+++ P I
Sbjct: 783 LSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCG-HSEKLAIAFGILNTSPGTII 841
Query: 607 RIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655
R+ KNLRVC DCH K ISK+ +REI+LRD RFH F+ G CSC DYW
Sbjct: 842 RVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O82380 | PP175_ARATH | No assigned EC number | 0.4959 | 0.9145 | 0.8116 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00024125001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (712 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 655 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-149 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-146 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-56 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-42 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-38 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-27 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-24 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 5e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 447 bits (1152), Expect = e-149
Identities = 206/608 (33%), Positives = 331/608 (54%), Gaps = 48/608 (7%)
Query: 49 KNIKQLKQIHTQMLRTGLFFDPYSASK-LFTPCALGTFSSLEYAREMFDQIPQPNLYTWN 107
K+I+ +K ++ + +G D Y ++ L G AR +FD++P+ NL +W
Sbjct: 137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID---ARRLFDEMPERNLASWG 193
Query: 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167
T+I + ++F +F ++ + TF +++A+A L R GQ +H V+K
Sbjct: 194 TIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252
Query: 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIEL 227
+ D F+S +LI Y+ CGD+ A CVF + +K V+WNSM++G+ G+ E+A+ L
Sbjct: 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
Y EM RD V+ D+FTF
Sbjct: 313 YYEM----------------------RD--------------------SGVSIDQFTFSI 330
Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
++ ++L ++ Q HA + + G L+ T+L+D+Y+K G ++ A VF + ++
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390
Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFN 407
+ W+ +IAG+ +G G +A+++F RM V PN VTF VL AC +SGL ++G F
Sbjct: 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450
Query: 408 QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENV 467
M + + P HY CM+++LGR GLLDEA I + P P ++W ALL AC+IH+N+
Sbjct: 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL 510
Query: 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEV 527
EL A L + PE V+L N+Y +G+ +++ + ++ GL P C+ IEV
Sbjct: 511 ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV 570
Query: 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLH 587
+ H F +G+ HP +EIY KLDE++ + +GYV + LL V+E++ ++ + H
Sbjct: 571 KKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDE-EKVSGRYH 629
Query: 588 SERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGG 647
SE+LAIA+GLI+ P++I ++ R+C DCH V K I+ + REI++RD RFHHF+ G
Sbjct: 630 SEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLG 689
Query: 648 NCSCMDYW 655
CSC DYW
Sbjct: 690 KCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 445 bits (1146), Expect = e-146
Identities = 216/599 (36%), Positives = 329/599 (54%), Gaps = 49/599 (8%)
Query: 55 KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYS 114
+++H +++TG D + L + S A ++F ++ + +W +I Y
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYL--SLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365
Query: 115 SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL 174
+ P ++ + + ++ P+E T V+ A A L VG +H + + +
Sbjct: 366 KNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424
Query: 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME 234
++N+LI Y+ C + A VF I +KDV+SW S+I+G
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL------------------- 465
Query: 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ 294
R E AL F ++ L+ + P+ T ++ LSACA+
Sbjct: 466 ---------------RLNNRCFE-------ALIFFRQMLLT--LKPNSVTLIAALSACAR 501
Query: 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTM 354
+GA+ G +IHA + + GI + +L +L+D+Y +CG ++ A F +DV W+ +
Sbjct: 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNIL 560
Query: 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414
+ G+ +G G A++LF+RM E+ V P+ VTF ++LCACS SG+V +G +F+ ME Y
Sbjct: 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620
Query: 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYAC 474
+ P +KHY C+VD+LGRAG L EA FI KMPI P +VWGALL AC+IH +VEL E A
Sbjct: 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAA 680
Query: 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKF 534
H+ EL+P + G +LL N+YA GKWD V+ +RK MR +GL +PGCS +EV G++H F
Sbjct: 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740
Query: 535 LAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIA 594
L + SHP KEI + L+ ++K+ G + S + E E ++ HSERLAIA
Sbjct: 741 LTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMD--EIEVSKDDIFCGHSERLAIA 798
Query: 595 YGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653
+GLI+ P PI + KNL +C +CH K ISK+ REI +RD +FHHF+ G CSC D
Sbjct: 799 FGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 1e-56
Identities = 117/365 (32%), Positives = 180/365 (49%), Gaps = 51/365 (13%)
Query: 43 SLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCA-LGTFSSLEYAREMFDQI 98
+++ C I L +++H ++R G D + L T G S AR +FD++
Sbjct: 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS---ARLVFDRM 248
Query: 99 PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVG 158
P+ + +WN +I Y + E ++ +F + S P+ T VI A L R+G
Sbjct: 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLG 307
Query: 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG 218
+ +HG V+K+ F D+ + NSLI Y G A VF + KD VSW +MISG+ +
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278
G +KA+E Y ME +NV PDE+T+
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIA---------------------------------- 393
Query: 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338
SVLSACA LG +D+GV++H +++G+ + +LI+MY+KC +DKALE
Sbjct: 394 --------SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445
Query: 339 VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398
VFH + +DV W+++IAG + EAL F +M +KPN+VT L AC+ G
Sbjct: 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGA 504
Query: 399 VDEGR 403
+ G+
Sbjct: 505 LMCGK 509
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 2e-42
Identities = 109/432 (25%), Positives = 208/432 (48%), Gaps = 45/432 (10%)
Query: 85 FSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144
F L +A +F ++P+ +L++WN L+ Y+ + ++ ++ ++++ + P+ +TFP
Sbjct: 134 FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPC 192
Query: 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204
V++ + G+ +H V++ FE D+ + N+LI Y CGD+ A VF + ++D
Sbjct: 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252
Query: 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264
+SWN+MISG+ + G + +EL+ M R+L
Sbjct: 253 CISWNAMISGYFENGECLEGLELFFTM----------------------RELS------- 283
Query: 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324
V+PD T SV+SAC LG +G ++H + K G ++ + SLI
Sbjct: 284 -------------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330
Query: 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384
MY G+ +A +VF ++++D W+ MI+G+ G +AL+ ++ M++ V P+ +
Sbjct: 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390
Query: 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444
T +VL AC+ G +D G + +++ G++ V +++M + +D+A+E
Sbjct: 391 TIASVLSACACLGDLDVG-VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449
Query: 445 MPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504
+P S + G + E + LL L+P N L+ + A+ G
Sbjct: 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP-NSVTLIAALSACARIGALMCG 508
Query: 505 SELRKHMRVSGL 516
E+ H+ +G+
Sbjct: 509 KEIHAHVLRTGI 520
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 6e-38
Identities = 90/366 (24%), Positives = 163/366 (44%), Gaps = 70/366 (19%)
Query: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180
++ +F L P+ T+ +++A L R +A++ V S FE D ++ N +
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
Query: 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
+ + CG L A +F + ++++ SW ++I G V G + +A L+REM
Sbjct: 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM--------- 215
Query: 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI 300
S + TFV +L A A LG+
Sbjct: 216 ---WEDGSDAEPR------------------------------TFVVMLRASAGLGSARA 242
Query: 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAM 360
G Q+H + K G+ + +++ +LIDMY+KCG+++ A VF + + W++M+AG+A+
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS-----------HSGLVDEGRMFFNQM 409
+G EAL L+ M+++ V + TF+ ++ S H+GL+ G +
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF----PL 358
Query: 410 EPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIH----E 465
+ V T +VD+ + G +++A ++MP S W AL+ H +
Sbjct: 359 DIVAN--------TALVDLYSKWGRMEDARNVFDRMPRKNLIS-WNALIAGYGNHGRGTK 409
Query: 466 NVELAE 471
VE+ E
Sbjct: 410 AVEMFE 415
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 8e-27
Identities = 77/307 (25%), Positives = 129/307 (42%), Gaps = 50/307 (16%)
Query: 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ 217
G + + S + + N+++ + G+L A+ VF + ++D+ SWN ++ G+ +
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK 164
Query: 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN 277
G+F++A+ LY M V+PD T VL C DL GR
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR----------------- 207
Query: 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL 337
++HA + + G +L+ + +LI MY KCG++ A
Sbjct: 208 -------------------------EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242
Query: 338 EVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397
VF + RD W+ MI+G+ G E L+LF M+E V P+ +T T+V+ AC
Sbjct: 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC---E 299
Query: 398 LVDEGRMFFNQMEPVY---GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW 454
L+ + R +M G V ++ M G EA + +M S W
Sbjct: 300 LLGDER-LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS-W 357
Query: 455 GALLGAC 461
A++
Sbjct: 358 TAMISGY 364
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-24
Identities = 85/336 (25%), Positives = 150/336 (44%), Gaps = 21/336 (6%)
Query: 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162
LYT TLI + S + F +F ++V N+ N TF +I AR Q +
Sbjct: 474 LYT--TLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG------KKDVVSWNSMISGFV 216
G++ + + D + N+LI G + A+ V + D ++ +++
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
G ++A E+Y+ + N+K +++C++K D +F ALSI+ ++ K
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF------ALSIYDDM-KKK 643
Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
V PDE F +++ G +D +I +KQGIKL +SL+ + N KA
Sbjct: 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703
Query: 337 LEVFHTVKSRDVF-VWSTMIAGFAMYGCGRE---ALDLFSRMQEAKVKPNAVTFTNVLCA 392
LE++ +KS + STM A G + AL++ S M+ + PN +T++ +L A
Sbjct: 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763
Query: 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428
D G +Q + G+ P + C+ +
Sbjct: 764 SERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 5e-21
Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 22/132 (16%)
Query: 520 PGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEED- 578
PGC E K L+G+ SHP KE E+ R+K G VP + V+ E+
Sbjct: 1 PGCVWSE----GKKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 579 ----VQEQALNLHSERLAIAYGLISVEPSQPIRIVKNL-RVCGDCHTVAKLISKLYNREI 633
++ + L H+E+ A+AYGL+ RI+K L R+CGDCH + I+K REI
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 634 LLRDRYRFHHFR 645
++RD RFHHF+
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 1e-17
Identities = 92/398 (23%), Positives = 150/398 (37%), Gaps = 97/398 (24%)
Query: 202 KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL--EFG 259
K D + ++IS + G + E++ EM V+ + T A++ CA+ + FG
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528
Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG--IKLNC 317
A I SKNV PD F +++SAC Q GA+D + A+MK + I +
Sbjct: 529 -----AYGIM----RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579
Query: 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377
+L+ G +D+A EV+ + E
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQM-------------------------------IHEY 608
Query: 378 KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437
+K +T + +CS G D ++ M+ GV P ++ +VD+ G AG LD+
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDK 667
Query: 438 AVEFIEKMP---IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494
A E ++ I G + +L+GAC SN
Sbjct: 668 AFEILQDARKQGIKLGTVSYSSLMGAC------------------------------SNA 697
Query: 495 YAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEI 554
W EL + ++ L+ P S++ N I G K E+
Sbjct: 698 ----KNWKKALELYEDIKSIKLR--PTVSTM--NALITALCEGNQ--------LPKALEV 741
Query: 555 VARLKSFGYVPNR---SHLLQLVEEEDVQEQALNLHSE 589
++ +K G PN S LL E +D + L+L S+
Sbjct: 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-14
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Query: 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323
+AL + +Q + V DE +V++ C A++ G ++ ++ L L ++
Sbjct: 69 QALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127
Query: 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
+ M+ + G L A VF + RD+F W+ ++ G+A G EAL L+ RM A V+P+
Sbjct: 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV 187
Query: 384 VTFTNVLCAC 393
TF VL C
Sbjct: 188 YTFPCVLRTC 197
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 3e-14
Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 6/250 (2%)
Query: 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282
+ I + + D + +S C++ L EAL +F L+
Sbjct: 64 EPIRIEVSESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPA 123
Query: 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342
T+ +++ AC L ++ ++ ++ G + + Y+ ++ M+ KCG L A +F
Sbjct: 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183
Query: 343 VKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402
+ R++ W T+I G G REA LF M E TF +L A + G G
Sbjct: 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243
Query: 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASV--WGALLGA 460
+ + GVV ++DM + G +++A + M P + W ++L
Sbjct: 244 QQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAG 299
Query: 461 CKIHENVELA 470
+H E A
Sbjct: 300 YALHGYSEEA 309
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 1e-13
Identities = 78/333 (23%), Positives = 125/333 (37%), Gaps = 81/333 (24%)
Query: 201 GKKDVVSWNSMISGFVQGGFFEKAIELYREME-MENVKPDEVTMVAVLSACAKKRDLEFG 259
GK+ + + ++ G + I+L +ME + D++ AC K+R ++
Sbjct: 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVK-- 423
Query: 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL 319
EA F +L NP TF ++S CA +D +++ +++ G+K +C L
Sbjct: 424 ----EAFR-FAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKL 474
Query: 320 TTSLIDMYTKCGNLDKALEVFHTVKSR----DVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
T+LI K G +D EVFH + + +V + +I G A G +A + M+
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 376 EAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435
VKP+ V F ++ AC SG VD R F D+L
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVD--RAF---------------------DVLAEMK-- 569
Query: 436 DEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495
E PI P GAL+ AC
Sbjct: 570 ------AETHPIDPDHITVGALMKAC---------------------------------- 589
Query: 496 AKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528
A G+ D E+ + + +K P +I VN
Sbjct: 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 8e-13
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252
DVV++N++I G+ + G E+A++L+ EM+ +KP+ T ++ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395
DV ++T+I G+ G EAL LF+ M++ +KPN T++ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-07
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240
V++N++I G + G E+A+EL++EM+ ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 14/31 (45%), Positives = 25/31 (80%)
Query: 206 VSWNSMISGFVQGGFFEKAIELYREMEMENV 236
V++NS+ISG+ + G E+A+EL++EM+ + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR 431
P+ VT+ ++ G V+E FN+M+ G+ P V Y+ ++D L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMK-KRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 63/261 (24%), Positives = 102/261 (39%), Gaps = 64/261 (24%)
Query: 23 PNPTTLTVNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFD---PYSASKL 76
PN TL + + C I L K+IH +LRTG+ FD P + L
Sbjct: 487 PNSVTLI-------------AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533
Query: 77 FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136
+ C + YA F+ + ++ +WN L+ Y + + + +F ++V S
Sbjct: 534 YVRCG-----RMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMV-ESGVN 586
Query: 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCV 196
P+E TF ++ A + R G G+ S E+ I+ +L H YA CV
Sbjct: 587 PDEVTFISLLCACS-----RSGMVTQGLEYFHSMEEKYSITPNLKH-YA---------CV 631
Query: 197 FVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDL 256
++G+ G +A +M + PD A+L+AC R +
Sbjct: 632 VDLLGR---------------AGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHV 673
Query: 257 EFGRWPNEALSIFHELQLSKN 277
E G L+ H +L N
Sbjct: 674 ELGE-----LAAQHIFELDPN 689
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383
++T+I G G EAL+LF M+E ++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 204 DVVSWNSMISGFVQGGFFEKAIELYREME 232
DVV++N++I G + G ++A+EL EME
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446
G+ P V Y ++D L RAG +DEAVE +++M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
++++I+G+ G EAL+LF M+E V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 321 TSLIDMYTKCGNLDKALEVFHTVKSR----DVFVWSTMIAGFA 359
+LID Y K G +++AL++F+ +K R +V+ +S +I G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329
PD T+ +++ + G ++ +++ +MKK+GIK N Y + LID K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 655 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.67 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.63 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.6 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.59 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.56 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.53 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.51 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.42 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.41 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.4 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.39 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.37 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.36 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.36 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.35 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.34 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.34 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.29 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.26 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.24 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.21 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.19 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.14 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.13 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.09 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.08 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.05 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.04 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.04 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.0 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.99 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.97 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.93 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.93 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.91 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.86 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.84 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.83 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.82 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.81 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.8 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.79 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.75 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.72 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.72 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.72 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.71 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.71 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.71 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.7 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.69 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.68 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.66 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.64 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.61 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.57 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.56 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.48 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.39 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.38 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.37 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.37 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.36 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.34 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.33 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.28 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.28 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.27 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.24 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.22 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.21 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.16 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.15 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.14 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.14 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.13 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.13 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.12 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.1 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.1 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.07 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.05 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.0 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.0 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.99 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.91 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.88 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.87 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.84 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.8 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.79 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.73 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.67 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.64 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.62 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.61 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.59 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.59 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.53 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.47 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.4 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.39 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.37 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.36 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.35 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.33 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.33 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.32 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.31 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.3 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.25 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.19 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.19 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.17 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.15 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.14 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.12 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.09 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.09 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.08 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.06 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.05 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.01 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.95 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.92 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.9 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.9 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.89 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.88 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.86 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.86 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.86 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.85 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.82 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.76 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.75 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.66 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.63 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.63 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.62 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.61 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.61 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.56 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.54 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.54 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.51 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.47 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.46 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.45 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.38 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.35 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.33 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.26 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.24 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.11 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.06 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.91 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.91 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.84 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.71 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.68 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.67 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.55 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.47 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.44 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.39 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.39 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.19 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.13 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.11 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.95 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.89 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.85 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.83 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.7 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.64 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.52 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.46 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.25 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.13 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.05 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.05 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.03 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.94 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.89 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.43 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.38 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.37 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.29 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.28 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.26 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.24 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.23 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.75 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.43 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.16 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.97 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.93 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.93 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.85 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.73 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.36 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.04 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.95 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.69 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.22 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.18 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 90.17 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.05 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.04 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.98 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.74 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.62 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.2 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.12 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.8 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.72 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.56 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.53 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.47 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.47 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.3 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.15 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.87 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 87.22 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.64 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.0 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.63 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.32 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.19 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.96 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 84.56 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.03 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.81 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.65 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.24 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.54 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 82.27 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.02 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 81.93 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.92 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 81.75 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.57 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.56 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.53 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.28 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.07 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.47 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 80.17 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.09 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.02 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-119 Score=1027.18 Aligned_cols=616 Identities=41% Similarity=0.745 Sum_probs=596.9
Q ss_pred cCCCCCCCcccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchH
Q 035659 30 VNNGHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106 (655)
Q Consensus 30 ~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~ 106 (655)
...+..|+..||+++|++|+..+++ +++|..+++.|+.||+.++|+||.+|+++| ++++|+++|++|++||+++|
T Consensus 179 ~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g--~~~~A~~lf~~m~~~d~~s~ 256 (857)
T PLN03077 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG--DVVSARLVFDRMPRRDCISW 256 (857)
T ss_pred HHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC--CHHHHHHHHhcCCCCCcchh
Confidence 3458899999999999999998877 899999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 035659 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI 186 (655)
Q Consensus 107 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 186 (655)
|+||.+|++.|++++|+++|.+| ...|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+||++|++
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCC-----
Q 035659 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW----- 261 (655)
Q Consensus 187 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~----- 261 (655)
+|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.+.+
T Consensus 336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988888887765543
Q ss_pred -------------------------------------------------------hHHHHHHHHHHHHCCCCCCCHHHHH
Q 035659 262 -------------------------------------------------------PNEALSIFHELQLSKNVNPDEFTFV 286 (655)
Q Consensus 262 -------------------------------------------------------~~~A~~l~~~m~~~~~~~p~~~t~~ 286 (655)
.++|+++|++|.. + +.||..||+
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~ 493 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLI 493 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHH
Confidence 4678888888864 4 899999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 035659 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366 (655)
Q Consensus 287 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 366 (655)
+++.+|++.|+++.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 035659 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446 (655)
Q Consensus 367 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 446 (655)
|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++|+
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999778999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeEEE
Q 035659 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIE 526 (655)
Q Consensus 447 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~ 526 (655)
++||..+|++|+.+|+.+|+.+.|+.+.+++++++|++...|..|+++|+..|+|++|.++++.|+++|++++||+||++
T Consensus 653 ~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 653 ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCccccccchhhhhhhhhcccccHHHHHHHhhccCCCCCcE
Q 035659 527 VNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLAIAYGLISVEPSQPI 606 (655)
Q Consensus 527 ~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~ 606 (655)
+++.+|.|.+||.+||+.++||..+++|..+|++.||+||+..++ ++++++ |+..+++||||||++|||++||+|+||
T Consensus 733 ~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~-k~~~~~~hse~la~a~~l~~~~~~~~i 810 (857)
T PLN03077 733 VKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVS-KDDIFCGHSERLAIAFGLINTVPGMPI 810 (857)
T ss_pred ECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHH-HHHHHHhccHHHHHHHhhhcCCCCCeE
Confidence 999999999999999999999999999999999999999999877 557777 999999999999999999999999999
Q ss_pred EEecccccCcchhHHHHHHhhhcCceEEEecCCcccccCCccccCCC
Q 035659 607 RIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMD 653 (655)
Q Consensus 607 ~~~~nl~~~~~~~~~~~~is~~~~~~~~~~d~~~~h~f~~g~csc~~ 653 (655)
||+||||||+|||+++||||++++|||||||.+|||||++|+|||+|
T Consensus 811 ~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 811 WVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999997
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-117 Score=986.54 Aligned_cols=577 Identities=35% Similarity=0.671 Sum_probs=558.0
Q ss_pred CCCCCcccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHH
Q 035659 33 GHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109 (655)
Q Consensus 33 ~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~l 109 (655)
+..|+..+|++++.+|++.+.. +++|..|.+.|+.||+.++|.|+.+|+++| ++++|+++|++|++||+++||++
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g--~~~~A~~lf~~m~~~~~~t~n~l 195 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG--MLIDARRLFDEMPERNLASWGTI 195 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC--CHHHHHHHHhcCCCCCeeeHHHH
Confidence 3568899999999999998876 899999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 035659 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189 (655)
Q Consensus 110 i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 189 (655)
|.+|++.|++++|+++|++| ...|+.||..||+.++.+|++.|+.+.+.++|..+.+.|+.+|..++|+||++|+++|+
T Consensus 196 i~~~~~~g~~~~A~~lf~~M-~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 274 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHH-HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC
Confidence 99999999999999999999 88899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHH
Q 035659 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269 (655)
Q Consensus 190 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~ 269 (655)
+++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|
T Consensus 275 ~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---------------------------------- 320 (697)
T PLN03081 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---------------------------------- 320 (697)
T ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----------------------------------
Confidence 9999999999999999999999999999999988888877776543
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 035659 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVF 349 (655)
Q Consensus 270 ~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 349 (655)
+.||..||++++.+|++.|++++|.++|..|.+.|++||..++++|+++|+++|++++|.++|++|.++|++
T Consensus 321 --------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~ 392 (697)
T PLN03081 321 --------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392 (697)
T ss_pred --------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCee
Confidence 677777888888888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 429 (655)
+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998789999999999999999
Q ss_pred HhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
++.|++++|.+++++|+++|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++
T Consensus 473 ~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCccccccchhhhhhhhhcccccH
Q 035659 510 HMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSE 589 (655)
Q Consensus 510 ~m~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~e 589 (655)
.|+++|+++.|++||+++++.+|.|.+||.+||+.++||.++.++..+|++.||+||+.++++++++++ |+..+.+|||
T Consensus 553 ~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~-~~~~~~~hse 631 (697)
T PLN03081 553 TLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDE-EKVSGRYHSE 631 (697)
T ss_pred HHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHH-HHHHHHhccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhhccCCCCCcEEEecccccCcchhHHHHHHhhhcCceEEEecCCcccccCCccccCCCCC
Q 035659 590 RLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRDRYRFHHFRGGNCSCMDYW 655 (655)
Q Consensus 590 ~la~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~is~~~~~~~~~~d~~~~h~f~~g~csc~~~~ 655 (655)
|||++|||+++|+|.||||+||||+|+|||+|+||||++++|+|||||.+|||||++|+|||+|||
T Consensus 632 kla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 632 KLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-73 Score=644.84 Aligned_cols=593 Identities=24% Similarity=0.392 Sum_probs=520.5
Q ss_pred CCCCCcccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHH
Q 035659 33 GHQHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL 109 (655)
Q Consensus 33 ~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~l 109 (655)
+.+|+..+|..++.+|...+.+ .++|..+.+.|..+++.++|+||.+|+++| +++.|.++|++|++||+++||++
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g--~~~~A~~~f~~m~~~d~~~~n~l 158 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG--ELVHAWYVFGKMPERDLFSWNVL 158 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC--ChHHHHHHHhcCCCCCeeEHHHH
Confidence 5678888899999999887766 889999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 035659 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189 (655)
Q Consensus 110 i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 189 (655)
|.+|++.|++++|+++|++| ...|+.||.+||+.++++|++.+++..+.++|..+++.|+.||..++|+||++|+++|+
T Consensus 159 i~~~~~~g~~~~A~~~f~~M-~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRM-LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 99999999999999999999 88899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCC--------
Q 035659 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW-------- 261 (655)
Q Consensus 190 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~-------- 261 (655)
+++|.++|++|+++|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+++
T Consensus 238 ~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998888888888777665443
Q ss_pred ----------------------------------------------------hHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 035659 262 ----------------------------------------------------PNEALSIFHELQLSKNVNPDEFTFVSVL 289 (655)
Q Consensus 262 ----------------------------------------------------~~~A~~l~~~m~~~~~~~p~~~t~~~ll 289 (655)
+++|+++|++|...| +.||..||+.++
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll 396 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVL 396 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHH
Confidence 689999999999888 999999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 035659 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALD 369 (655)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (655)
.+|++.|+++.|.++|+.+.+.|+.++..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|++
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 035659 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449 (655)
Q Consensus 370 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p 449 (655)
+|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+. |+.+|..++++|+++|+++|++++|.++|+++ .|
T Consensus 477 lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~ 552 (857)
T PLN03077 477 FFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EK 552 (857)
T ss_pred HHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CC
Confidence 9999986 59999999999999999999999999999999986 99999999999999999999999999999999 78
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-CCCcchHHHHHHHHHhcCCchhHHHHHHHHH-hCCCccCCceeEEEE
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELE-PENHGALVLLSNIYAKTGKWDNVSELRKHMR-VSGLKKEPGCSSIEV 527 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~~~ 527 (655)
|..+|++++.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|++.|++++|.++|+.|. +.|+.|+...+...+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999876 5588999999999999999999999999999 679888765444332
Q ss_pred CCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCccccccchhhhhhhhhcccccHHHH-HHHhhccCCCCCcE
Q 035659 528 NGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQEQALNLHSERLA-IAYGLISVEPSQPI 606 (655)
Q Consensus 528 ~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~e~la-~~~~~~~~~~~~~~ 606 (655)
+. +.. .+. ++++.+++++| +..||...+...+..+. ..+.+.. .|..+ ..+.+.|...+..+
T Consensus 633 ~~----l~r----~G~----~~eA~~~~~~m---~~~pd~~~~~aLl~ac~-~~~~~e~-~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 633 DL----LGR----AGK----LTEAYNFINKM---PITPDPAVWGALLNACR-IHRHVEL-GELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred HH----HHh----CCC----HHHHHHHHHHC---CCCCCHHHHHHHHHHHH-HcCChHH-HHHHHHHHHhhCCCCcchHH
Confidence 22 111 112 23456666666 58899777666666554 2222211 11222 23455666555555
Q ss_pred EEecccccCcchhHHHHHHhhhcCceEEEe-------cCCcccccCCcccc
Q 035659 607 RIVKNLRVCGDCHTVAKLISKLYNREILLR-------DRYRFHHFRGGNCS 650 (655)
Q Consensus 607 ~~~~nl~~~~~~~~~~~~is~~~~~~~~~~-------d~~~~h~f~~g~cs 650 (655)
.+..-....|+..++.+....|..+.+... -.+..|-|..|--+
T Consensus 696 ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 696 LLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 444555778999999999999988733211 13467788666443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-64 Score=560.35 Aligned_cols=509 Identities=18% Similarity=0.295 Sum_probs=464.3
Q ss_pred CCCcccHHHHHHHhcCcchH---HHHHHHHHHhCC-CCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHH
Q 035659 35 QHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGL-FFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLI 110 (655)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~-~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li 110 (655)
.++...|..++..|.+.+.+ .++++.|.+.|+ .++..+++.++..|.+.| .+++|.++|+.|+.||..+||.+|
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g--~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR--AVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566788888888666655 899999999996 568888999999999999 999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 035659 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190 (655)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 190 (655)
.+|++.|++++|.++|+.| ...|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|++||++|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M-~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLV-QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 9999999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC----CCeeHHHHHHHHHHhCCChhHHHHHHHHHHH--CCCCCCHhhHHHHHHHHhccCccccCCChHH
Q 035659 191 AMAYCVFVMIGK----KDVVSWNSMISGFVQGGFFEKAIELYREMEM--ENVKPDEVTMVAVLSACAKKRDLEFGRWPNE 264 (655)
Q Consensus 191 ~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~ 264 (655)
++|.++|+.|.+ ||.++||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|+++ +
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld------e 597 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD------R 597 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH------H
Confidence 999999999964 8999999999999999999999999999986 689999999999999999999977 9
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344 (655)
Q Consensus 265 A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 344 (655)
|.++|++|.+.+ +.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++++|++.|++++|.++|++|.
T Consensus 598 A~elf~~M~e~g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 598 AKEVYQMIHEYN-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999988 9999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcc
Q 035659 345 S----RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420 (655)
Q Consensus 345 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 420 (655)
+ +|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. |+.||..
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~ 755 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTI 755 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHH
Confidence 4 6889999999999999999999999999999999999999999999999999999999999999876 9999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC---CCCCChhHHHHHHHHHHh-----------------------cCCHHHHHHHH
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM---PIVPGASVWGALLGACKI-----------------------HENVELAEYAC 474 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~ 474 (655)
+|+.++.+|++.|++++|.+++++| ++.||..+|++++..|.+ .+..++|..+|
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 9999999999999999999999998 789999999999977543 12346799999
Q ss_pred HHHhccC-CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHH
Q 035659 475 SHLLELE-PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDE 553 (655)
Q Consensus 475 ~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 553 (655)
++|++.+ .+|..+|..++.++.+.+.++.+..+++.|...+..++...+..++++ + .. ...++..
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g----~----~~------~~~~A~~ 901 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG----F----GE------YDPRAFS 901 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh----h----cc------ChHHHHH
Confidence 9999987 568889999998888999999999999988887776655555544443 2 11 1234788
Q ss_pred HHHHHHhCCcccCCc
Q 035659 554 IVARLKSFGYVPNRS 568 (655)
Q Consensus 554 l~~~m~~~g~~pd~~ 568 (655)
++++|.+.|+.|+..
T Consensus 902 l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 902 LLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHcCCCCCcc
Confidence 999999999999976
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=548.35 Aligned_cols=470 Identities=20% Similarity=0.286 Sum_probs=434.5
Q ss_pred CCCcccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCC----CCCcchHH
Q 035659 35 QHHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP----QPNLYTWN 107 (655)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~----~~~~~~~~ 107 (655)
.++..++..++..|...+.. ..++..|. .||..+||.||.+|++.| +++.|.++|+.|. .||+.+||
T Consensus 403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g--~~e~A~~lf~~M~~~Gl~pD~~tyn 476 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQ--DIDGALRVLRLVQEAGLKADCKLYT 476 (1060)
T ss_pred CchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 45566677888888887766 44444444 389999999999999999 9999999999996 48999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 035659 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC 187 (655)
Q Consensus 108 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 187 (655)
+||.+|++.|+.++|.++|++| ...|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM-~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~ 555 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999 889999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcC------CCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCC
Q 035659 188 GDLAMAYCVFVMIG------KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261 (655)
Q Consensus 188 g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~ 261 (655)
|++++|.++|++|. .||.++|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|+++
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d---- 631 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD---- 631 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH----
Confidence 99999999999995 47999999999999999999999999999999999999999999999999999977
Q ss_pred hHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 035659 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 341 (655)
+|+++|++|...| +.||..||++++.+|++.|++++|.++|++|.+.|+.||..+|++||.+|+++|++++|.++|+
T Consensus 632 --eAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 632 --FALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred --HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999988 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC
Q 035659 342 TVK----SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417 (655)
Q Consensus 342 ~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 417 (655)
+|. .||..+||+||.+|++.|+.++|+++|++|...|+.||..||+.++.+|++.|++++|.++|.+|.+. |+.|
T Consensus 709 eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~p 787 (1060)
T PLN03218 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKP 787 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCC
Confidence 995 58999999999999999999999999999999999999999999999999999999999999999887 9999
Q ss_pred CcchHHHHHHHHH----hcC-------------------CHHHHHHHHHhC---CCCCChhHHHHHHHHHHhcCCHHHHH
Q 035659 418 GVKHYTCMVDMLG----RAG-------------------LLDEAVEFIEKM---PIVPGASVWGALLGACKIHENVELAE 471 (655)
Q Consensus 418 ~~~~y~~li~~~~----~~g-------------------~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~ 471 (655)
|..+|++|++++. +++ ..++|..+|++| ++.||..+|+.++.++...+..+.+.
T Consensus 788 d~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~ 867 (1060)
T PLN03218 788 NLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRN 867 (1060)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHH
Confidence 9999999997743 222 246799999999 78999999999998888889999999
Q ss_pred HHHHHHhcc-CCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCc
Q 035659 472 YACSHLLEL-EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPG 521 (655)
Q Consensus 472 ~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 521 (655)
.+++.+... .+++..+|..|++++.+. .++|..++++|.+.|+.|+..
T Consensus 868 ~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 868 RLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 888877654 367889999999988432 368999999999999998764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-58 Score=510.12 Aligned_cols=490 Identities=21% Similarity=0.345 Sum_probs=408.7
Q ss_pred CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHH
Q 035659 100 QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNS 179 (655)
Q Consensus 100 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 179 (655)
+++.++|+++|.+|++.|++++|+++|+.|....+..||..+|+.++.+|++.++++.+.++|..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 46788999999999999999999999999933345789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccC
Q 035659 180 LIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259 (655)
Q Consensus 180 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~ 259 (655)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g------------------------ 219 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG------------------------ 219 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC------------------------
Confidence 99999999999999999999999999999999999999999999999888887554
Q ss_pred CChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 035659 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339 (655)
Q Consensus 260 ~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (655)
+.||..||+.++.+|++.|..+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++
T Consensus 220 ------------------~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 281 (697)
T PLN03081 220 ------------------SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV 281 (697)
T ss_pred ------------------CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHH
Confidence 56667777777777777788888888888899999999999999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCc
Q 035659 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV 419 (655)
Q Consensus 340 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 419 (655)
|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.||.
T Consensus 282 f~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~ 360 (697)
T PLN03081 282 FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDI 360 (697)
T ss_pred HHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 999999
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-CCCcchHHHHHHHHHhc
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELE-PENHGALVLLSNIYAKT 498 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 498 (655)
.+|++|+++|+++|++++|.++|++|. +||..+|++|+.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|++.
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999996 5899999999999999999999999999999876 55788999999999999
Q ss_pred CCchhHHHHHHHHHh-CCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCccccccchhh
Q 035659 499 GKWDNVSELRKHMRV-SGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEE 577 (655)
Q Consensus 499 g~~~~a~~~~~~m~~-~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~ 577 (655)
|++++|.++|+.|.+ .|+.|+...+...++. + ...+..++ +.++ +++.+..||..++...+..+
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~----l----~r~G~~~e----A~~~---~~~~~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIEL----L----GREGLLDE----AYAM---IRRAPFKPTVNMWAALLTAC 504 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHH----H----HhcCCHHH----HHHH---HHHCCCCCCHHHHHHHHHHH
Confidence 999999999999976 5887766544433322 1 12223332 3334 44567888887766666555
Q ss_pred hhhhhhcccccHHHHHHHhhccCCCCCcEEEecccccCcchhHHHHHHhhhcCceEEEec-------CCcccccCCccc
Q 035659 578 DVQEQALNLHSERLAIAYGLISVEPSQPIRIVKNLRVCGDCHTVAKLISKLYNREILLRD-------RYRFHHFRGGNC 649 (655)
Q Consensus 578 ~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~is~~~~~~~~~~d-------~~~~h~f~~g~c 649 (655)
. +.+.+..--+.....+++.+...+..+.+++-+..+|+..+|.++...|..+.+-..+ .+..|.|-.|-.
T Consensus 505 ~-~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 505 R-IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred H-HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 4 3222211111111224555544455556777788999999999999999988653222 345677766543
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=219.53 Aligned_cols=106 Identities=56% Similarity=1.016 Sum_probs=97.0
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCccccccchhhhhh--------hhhcccccHHHH
Q 035659 521 GCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKSFGYVPNRSHLLQLVEEEDVQ--------EQALNLHSERLA 592 (655)
Q Consensus 521 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~--------~~~~~~~~e~la 592 (655)
+++|+.+ |.|.+||.+||+. ++..+|...||.|++..+.+++++++ + +..+.+||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEE-KHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhh-hhhcccccchhhhhccHHHHH
Confidence 6789876 9999999999987 67778888999999999888887765 4 568899999999
Q ss_pred HHHhhccCCCCCcEEEeccc-ccCcchhHHHHHHhhhcCceEEEecCCcccccC
Q 035659 593 IAYGLISVEPSQPIRIVKNL-RVCGDCHTVAKLISKLYNREILLRDRYRFHHFR 645 (655)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~nl-~~~~~~~~~~~~is~~~~~~~~~~d~~~~h~f~ 645 (655)
++|||+++ ||+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 69 iafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999999 899999 999999999999999999999999999999996
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-26 Score=262.00 Aligned_cols=425 Identities=12% Similarity=0.037 Sum_probs=242.2
Q ss_pred hhhhHHHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHH
Q 035659 71 YSASKLFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK 147 (655)
Q Consensus 71 ~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~ 147 (655)
.....++..|.+.| ++++|.++++.+.. .+..+|+.+...+...|++++|...|+++ ... .+.+...+..+..
T Consensus 432 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~-~~~~~~~~~~la~ 507 (899)
T TIGR02917 432 RADLLLILSYLRSG--QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA-LSI-EPDFFPAAANLAR 507 (899)
T ss_pred hhHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHH-Hhh-CCCcHHHHHHHHH
Confidence 34445555666666 66666666666542 34455666666666666666666666666 221 1123334555555
Q ss_pred HHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHH
Q 035659 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKA 224 (655)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 224 (655)
.+...|++++|.+.++.+++.. +.+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHH
Confidence 6666666666666666666554 44555666666666666666666666665533 2344555666666666666666
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 035659 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQI 304 (655)
Q Consensus 225 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 304 (655)
+.+++++.+.. +.+..+|..+...+...|+++ +|+..|+++.... +.+...+..+..++.+.|++++|..+
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN------KAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666665432 334555666666666666644 6666666665432 33444555566666666666666666
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 035659 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381 (655)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (655)
++++.+.. +.+..++..++..+.+.|++++|.++++.+.+ .+...+..+...+...|++++|++.|+++... .|
T Consensus 658 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 734 (899)
T TIGR02917 658 LKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--AP 734 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CC
Confidence 66665543 33455566666666666666666666666543 23445555555666666666666666666553 23
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHH
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLG 459 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~ 459 (655)
+..++..+..++.+.|+.++|.+.++.+.+. ...+...+..+...|.+.|++++|.+.|+++ .. .++..+++.+..
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 812 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAW 812 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3345555555566666666666666655542 2233455555555666666666666666554 11 223455555555
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.+...|+ .+|+..++++++..|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 813 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 813 LYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5555555 555555555555555555555555555555555555555555555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-25 Score=257.41 Aligned_cols=456 Identities=13% Similarity=0.021 Sum_probs=378.6
Q ss_pred cccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHH
Q 035659 38 PHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIR 111 (655)
Q Consensus 38 ~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~ 111 (655)
...+..+...+...++. ...+..+.+.. +.+...+..+...|...| ++++|.+.|+.... .+...+..++.
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 439 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQG--DPSEAIADLETAAQLDPELGRADLLLIL 439 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHhhCCcchhhHHHHHH
Confidence 34455555555555555 55555555542 235667788888888889 99999999987753 23456677888
Q ss_pred HHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 035659 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191 (655)
Q Consensus 112 ~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 191 (655)
.+.+.|++++|+.+++.+ .. ..+++..++..+...+...|++++|.+.+..+++.. +.+...+..+...+...|+++
T Consensus 440 ~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKL-EK-KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHhcCCHHHHHHHHHHH-HH-hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999998 33 334567788889999999999999999999998875 556777888999999999999
Q ss_pred HHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHH
Q 035659 192 MAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268 (655)
Q Consensus 192 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l 268 (655)
+|.+.|+++.+ .+..+++.+...+.+.|+.++|..+|+++.+.+ +.+...+..+...+...|+.+ +|+.+
T Consensus 517 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~------~A~~~ 589 (899)
T TIGR02917 517 DAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK------KALAI 589 (899)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH------HHHHH
Confidence 99999998764 466788999999999999999999999997764 345677888899999999966 99999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---
Q 035659 269 FHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--- 345 (655)
Q Consensus 269 ~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 345 (655)
++++... .+.+..+|..+..++...|++++|...++.+.+.. +.+...+..+...|.+.|++++|..+|+++.+
T Consensus 590 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 590 LNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666 (899)
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999765 36677889999999999999999999999998865 45677888999999999999999999998764
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHH
Q 035659 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425 (655)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~l 425 (655)
.+..+|..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|.+.|+.+... .|+..++..+
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l 742 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKL 742 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHH
Confidence 357789999999999999999999999998864 446677888888899999999999999998753 5666788889
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchh
Q 035659 426 VDMLGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 426 i~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 503 (655)
..++.+.|++++|.+.++++ ....+..++..+...|...|+.++|...++++++..|+++..+..++.++...|+ .+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH
Confidence 99999999999999999887 2334577888888999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHhC
Q 035659 504 VSELRKHMRVS 514 (655)
Q Consensus 504 a~~~~~~m~~~ 514 (655)
|...+++..+.
T Consensus 822 A~~~~~~~~~~ 832 (899)
T TIGR02917 822 ALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHhh
Confidence 99999988764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=185.68 Aligned_cols=380 Identities=14% Similarity=0.172 Sum_probs=326.0
Q ss_pred CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChh-HHHH
Q 035659 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLF-ISNS 179 (655)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ 179 (655)
-..+|..+...+-..|++++|+.+++.|+.. +| ....|..+..++...|+.+.|.+.+...++.. |+.. +.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~ 189 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcc
Confidence 3457888999999999999999999999432 34 46678889999999999999999999998874 5544 3445
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCc
Q 035659 180 LIHFYAICGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD-EVTMVAVLSACAKKRD 255 (655)
Q Consensus 180 li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~ 255 (655)
+-...-..|++++|...+.+..+ | =.++|+.|...+-..|+...|+.-|++.+.. .|+ ...|..|...|...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 55566668999999999987655 4 3578999999999999999999999998864 455 5678889999988888
Q ss_pred cccCCChHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 035659 256 LEFGRWPNEALSIFHELQLSKNVNPD-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLD 334 (655)
Q Consensus 256 ~~~~~~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (655)
++ +|+..|.+... ..|+ ...+..+...|...|.+|.|...|++.++.. +.-+..|+.|..++-..|++.
T Consensus 268 ~d------~Avs~Y~rAl~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 268 FD------RAVSCYLRALN---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred ch------HHHHHHHHHHh---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchH
Confidence 66 99999998876 4555 6678888888999999999999999999864 334779999999999999999
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 335 KALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN-AVTFTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 335 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
+|.+.+++... ....+.+.|...|...|..++|..+|.+..+ +.|. ...++.|...|-.+|++++|...|++..
T Consensus 338 ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 338 EAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 99999998764 3567899999999999999999999999988 5665 4668889999999999999999999987
Q ss_pred hhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 411 PVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 411 ~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
.++|+ ...|+.+...|...|+.+.|.+.+.+. .+.|. ....+.|.+.+...|++.+|+..++.+++++|+.+.+
T Consensus 416 ---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 416 ---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred ---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 67888 578999999999999999999999886 67777 4688999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchh
Q 035659 488 LVLLSNIYAKTGKWDN 503 (655)
Q Consensus 488 ~~~l~~~~~~~g~~~~ 503 (655)
|..++.++--..+|.+
T Consensus 493 ~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 493 YCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHhcccc
Confidence 9999888776667766
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-19 Score=175.72 Aligned_cols=412 Identities=15% Similarity=0.127 Sum_probs=328.3
Q ss_pred hcCCCCChHHHHHHhhcCCCCCc-ch--HHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchH
Q 035659 81 ALGTFSSLEYAREMFDQIPQPNL-YT--WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRV 157 (655)
Q Consensus 81 ~~~g~~~~~~A~~~f~~~~~~~~-~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~ 157 (655)
-+.| ++.+|++--...-+.|. .+ .-.+-..+.+..+.+....--... .+ -..--..+|..+.+.+-..|+++.
T Consensus 59 yq~g--d~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a-~r-~~~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 59 YQGG--DYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLA-IR-KNPQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred Hhcc--CHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhh-hh-ccchHHHHHHHHHHHHHHhchHHH
Confidence 3455 77777664443332221 11 111223444545554433322222 11 122346789999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCeeHHH-HHHHHHHhCCChhHHHHHHHHHHHC
Q 035659 158 GQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KDVVSWN-SMISGFVQGGFFEKAIELYREMEME 234 (655)
Q Consensus 158 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 234 (655)
|..+++.+++.. +..+..|..+..+|...|+.+.|.+.|.+..+ |+..... .+...+-..|+..+|...|.+.++.
T Consensus 135 al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~ 213 (966)
T KOG4626|consen 135 ALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET 213 (966)
T ss_pred HHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh
Confidence 999999999885 45678899999999999999999999988776 4444333 3444445579999999999888775
Q ss_pred CCCCC-HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 035659 235 NVKPD-EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312 (655)
Q Consensus 235 g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 312 (655)
.|. ...|+.|...+-..|+.. .|+.-|++... +.|+ ...|-.|...|...+.++.|...|.+.....
T Consensus 214 --qp~fAiawsnLg~~f~~~Gei~------~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 214 --QPCFAIAWSNLGCVFNAQGEIW------LAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred --CCceeeeehhcchHHhhcchHH------HHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 344 567888888898999976 99999999876 5565 5588899999999999999999999888753
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHH
Q 035659 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN-AVTFTN 388 (655)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 388 (655)
+....++..+...|...|.+|.|+..+++..+. -...|+.|..++-..|+..+|...|.+... ..|+ ....+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH
Confidence 345677888888999999999999999998753 357899999999999999999999999988 4555 567889
Q ss_pred HHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcC
Q 035659 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHE 465 (655)
Q Consensus 389 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 465 (655)
|...+...|.+++|..+|....+ +.|. ....+.|...|-+.|++++|+..+++. .++|+ ...++.+...|...|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 99999999999999999998874 4666 567899999999999999999999986 88898 468999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+...|.+.+.+++..+|.-..++..|+.+|-..|++.+|++-++...+.
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999887663
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-17 Score=194.82 Aligned_cols=439 Identities=13% Similarity=0.089 Sum_probs=314.6
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC--CCcc-hH----------------HHHHHHHHh
Q 035659 55 KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ--PNLY-TW----------------NTLIRAYSS 115 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~--~~~~-~~----------------~~li~~~~~ 115 (655)
++.+..+... -+.|+.++..+...+.+.| +.++|.+.+++..+ |+.. .+ -.+...+.+
T Consensus 48 ~~~l~kl~~~-~p~~p~~~~~~~~~~l~~g--~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~ 124 (1157)
T PRK11447 48 RQSLYRLELI-DPNNPDVIAARFRLLLRQG--DSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLAT 124 (1157)
T ss_pred HHHHHHHHcc-CCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 4444444432 1236788888899999999 99999999998864 3221 12 223346788
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCCcc-hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 035659 116 SAEPIQSFMIFLQLVYNSPYFPNEF-TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194 (655)
Q Consensus 116 ~g~~~~A~~~~~~m~~~~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 194 (655)
.|++++|+..|+.+ .. +.+|+.. ............|+.++|.+.++.+++.. +.+...+..+...+...|+.++|+
T Consensus 125 ~g~~~eA~~~~~~~-l~-~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl 201 (1157)
T PRK11447 125 TGRTEEALASYDKL-FN-GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGF 201 (1157)
T ss_pred CCCHHHHHHHHHHH-cc-CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHH
Confidence 99999999999998 33 2233321 11111222234589999999999999885 557778889999999999999999
Q ss_pred HHHhhcCCCCe-----------------------eHHH----------------------------------HHHHHHHh
Q 035659 195 CVFVMIGKKDV-----------------------VSWN----------------------------------SMISGFVQ 217 (655)
Q Consensus 195 ~~f~~~~~~~~-----------------------~~~~----------------------------------~li~~~~~ 217 (655)
..|+++.+... ..+. .....+..
T Consensus 202 ~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~ 281 (1157)
T PRK11447 202 AVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVD 281 (1157)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 99987642110 0000 11345667
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHH------------
Q 035659 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF------------ 285 (655)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~------------ 285 (655)
.|++++|+..|++..+.. +-+...+..+...+.+.|+.+ +|+..|++..+...-.++...+
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~------eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRA------RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 899999999999998763 236788889999999999976 9999999988754111221111
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHH---------
Q 035659 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWST--------- 353 (655)
Q Consensus 286 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~--------- 353 (655)
......+.+.|++++|...++++++.. +.+...+..+..+|.+.|++++|++.|+++.+. +...+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 122345678899999999999999875 456677888899999999999999999987642 2222222
Q ss_pred ---------------------------------HHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcH
Q 035659 354 ---------------------------------MIAGFAMYGCGREALDLFSRMQEAKVKPN-AVTFTNVLCACSHSGLV 399 (655)
Q Consensus 354 ---------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 399 (655)
+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 223455678999999999998874 454 55666778889999999
Q ss_pred HHHHHHHHHcchhcCccCC-cchHH--------------------------------------------HHHHHHHhcCC
Q 035659 400 DEGRMFFNQMEPVYGVVPG-VKHYT--------------------------------------------CMVDMLGRAGL 434 (655)
Q Consensus 400 ~~a~~~~~~~~~~~~~~p~-~~~y~--------------------------------------------~li~~~~~~g~ 434 (655)
++|...++.+.+. .|+ ...+. .+.+.+...|+
T Consensus 512 ~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 512 SQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999988653 232 22221 12334555666
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 435 LDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 435 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.++|.++++.-| ++...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+.++...+.
T Consensus 589 ~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 589 EAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 666666666432 345566778888899999999999999999999999999999999999999999999999877653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-18 Score=197.09 Aligned_cols=419 Identities=12% Similarity=0.030 Sum_probs=317.7
Q ss_pred HhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHH-----------
Q 035659 78 TPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP----------- 143 (655)
Q Consensus 78 ~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~----------- 143 (655)
..+...| ++++|+..|++..+ .+...+..+...|.+.|++++|+..|++.+....-.++...+.
T Consensus 277 ~~~~~~g--~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSG--QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 4455667 99999999987653 3567788888899999999999999998833321111111111
Q ss_pred -HHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCC
Q 035659 144 -FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGG 219 (655)
Q Consensus 144 -~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 219 (655)
.....+.+.|++++|...++++++.. +.+...+..+..+|...|++++|++.|+++.+ .+...+..+...|. .+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hc
Confidence 12335667899999999999999875 45667788889999999999999999988765 24556777777764 45
Q ss_pred ChhHHHHHHHHHHHCCCC--------CCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 035659 220 FFEKAIELYREMEMENVK--------PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA 291 (655)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~ 291 (655)
+.++|+.+++.+...... .....+..+...+...|+++ +|++.|++..+.. +-+...+..+...
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~------eA~~~~~~Al~~~--P~~~~~~~~LA~~ 504 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWA------QAAELQRQRLALD--PGSVWLTYRLAQD 504 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHH------HHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 789999888766432110 01223455666777888866 9999999998753 3345677788889
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC----h---------hHHHHHHHHH
Q 035659 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD----V---------FVWSTMIAGF 358 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~ 358 (655)
+.+.|++++|...++++.+.. +.+...+..+...+.+.|+.++|...++.+.... . ..+..+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999998754 3455566666667788999999999999886421 1 1123456678
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHH
Q 035659 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~ 437 (655)
...|+.++|+.+++. .+++...+..+...+.+.|+.++|+..|+.+.+. .| +...+..++..|...|++++
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHH
Confidence 899999999999882 2345566777888899999999999999999864 44 47788999999999999999
Q ss_pred HHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCCchhHHHHHH
Q 035659 438 AVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENH------GALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 438 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
|++.++.. ...|+ ..++..+..++...|++++|.++++++++..|+++ ..+..++.++...|++++|.+.++
T Consensus 656 A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 656 ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999987 34444 56777788889999999999999999999876544 356667899999999999999998
Q ss_pred HHHh-CCCc
Q 035659 510 HMRV-SGLK 517 (655)
Q Consensus 510 ~m~~-~g~~ 517 (655)
.... .|+.
T Consensus 736 ~Al~~~~~~ 744 (1157)
T PRK11447 736 DAMVASGIT 744 (1157)
T ss_pred HHHhhcCCC
Confidence 7753 3443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-18 Score=180.66 Aligned_cols=299 Identities=15% Similarity=0.089 Sum_probs=181.6
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHhccCcc
Q 035659 183 FYAICGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD---EVTMVAVLSACAKKRDL 256 (655)
Q Consensus 183 ~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~ 256 (655)
.+...|++++|...|+++.+ | +..+|..+...+.+.|++++|+.+++.+...+..++ ..++..+...+.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34455666666666666543 2 233555666666666666666666666554321111 12344444444444443
Q ss_pred ccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHH
Q 035659 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336 (655)
Q Consensus 257 ~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 336 (655)
+ +|+.+|+++.... +++..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 124 ~------~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------- 178 (389)
T PRK11788 124 D------RAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------- 178 (389)
T ss_pred H------HHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------
Confidence 3 5555555544321 22334444444444444444444444444444321110000
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCcc
Q 035659 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416 (655)
Q Consensus 337 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 416 (655)
....|..+...+.+.|+.++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+. .
T Consensus 179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~ 244 (389)
T PRK11788 179 ----------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---D 244 (389)
T ss_pred ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---C
Confidence 01124455566667777777777777776642 223445666667777788888888888877643 2
Q ss_pred CC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 417 PG--VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 417 p~--~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
|+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|..+++++++..|++. .+..+..
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~ 323 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLD 323 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHH
Confidence 33 345677788888888888888888876 4456766677888888889999999999999888888664 4555555
Q ss_pred HHHh---cCCchhHHHHHHHHHhCCCccCCc
Q 035659 494 IYAK---TGKWDNVSELRKHMRVSGLKKEPG 521 (655)
Q Consensus 494 ~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 521 (655)
.+.. .|+.+++..+++.|.+++++++|.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5443 558999999999999999888886
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-18 Score=177.60 Aligned_cols=294 Identities=12% Similarity=0.095 Sum_probs=172.9
Q ss_pred HHhCCCcHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcC
Q 035659 113 YSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD---LFISNSLIHFYAICG 188 (655)
Q Consensus 113 ~~~~g~~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g 188 (655)
+...|++++|+..|.++ ... .| +..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.|
T Consensus 45 ~~~~~~~~~A~~~~~~a-l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEM-LKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhcCChHHHHHHHHHH-Hhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455666666666666 222 22 233455555555566666666666665555321111 234566667777777
Q ss_pred CHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHhccCccccCCC
Q 035659 189 DLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE----VTMVAVLSACAKKRDLEFGRW 261 (655)
Q Consensus 189 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~~~~ 261 (655)
++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++. ..+..+...+.+.|+.+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~---- 197 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD---- 197 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH----
Confidence 77777777776654 34556777777777777777777777777665432221 12344555555666644
Q ss_pred hHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 035659 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 341 (655)
+|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|.+.++
T Consensus 198 --~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 198 --AARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred --HHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6766776665532 223445555666666677777777777776654322223455666666777777777776666
Q ss_pred hcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCcHHHHHHHHHHcchhcCcc
Q 035659 342 TVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH---SGLVDEGRMFFNQMEPVYGVV 416 (655)
Q Consensus 342 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~ 416 (655)
++.+ |+...+..++..+.+.|++++|..+|+++.+. .|+..++..++..+.. .|+.+++..+++.+.++ ++.
T Consensus 274 ~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~ 350 (389)
T PRK11788 274 RALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLK 350 (389)
T ss_pred HHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHh
Confidence 6543 34444566666666777777777777666653 5666666666655443 34666677777666654 555
Q ss_pred CCcc
Q 035659 417 PGVK 420 (655)
Q Consensus 417 p~~~ 420 (655)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 5544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-17 Score=177.84 Aligned_cols=389 Identities=12% Similarity=0.037 Sum_probs=281.9
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 035659 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185 (655)
Q Consensus 106 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 185 (655)
+...-..+.+.|++++|+..|.+. .. ..|+...|..+..++.+.|+++.|...+..+++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~a-l~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKA-IE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-Hh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 445566777889999999999887 33 45777778888888888899999999998888875 445677888888899
Q ss_pred hcCCHHHHHHHHhhcCCC---CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH--------------
Q 035659 186 ICGDLAMAYCVFVMIGKK---DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS-------------- 248 (655)
Q Consensus 186 ~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-------------- 248 (655)
..|++++|..-|...... +......++.-+.. ..+.....+..+.. +++...+..+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccCCcchhhh
Confidence 999999988777544321 11111111111111 11111111111110 000001110000
Q ss_pred -------------------HH---hccCccccCCChHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 035659 249 -------------------AC---AKKRDLEFGRWPNEALSIFHELQLSKNVNPD-EFTFVSVLSACAQLGAMDIGVQIH 305 (655)
Q Consensus 249 -------------------~~---~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 305 (655)
.. ...+. +++|++.|++....+...|+ ...+..+...+...|++++|...+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~------y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADES------YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhh------HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00 01122 45999999999876434454 456777778888999999999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-
Q 035659 306 AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP- 381 (655)
Q Consensus 306 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 381 (655)
++.++.. +.+...|..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .|
T Consensus 355 ~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~ 431 (615)
T TIGR00990 355 SKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPD 431 (615)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--Ccc
Confidence 9999864 33466888899999999999999999998754 36788999999999999999999999999985 45
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCh-h-------
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGA-S------- 452 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~------- 452 (655)
+...+..+..++.+.|++++|+..|+...+. ...+...|+.+..+|...|++++|++.|++. .+.|+. .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 4566777788899999999999999998753 2234678899999999999999999999885 444431 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.++..+..+...|++++|+..++++++++|++...+..++.++...|++++|.+.+++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 12222233445699999999999999999999999999999999999999999999987663
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-16 Score=174.75 Aligned_cols=445 Identities=9% Similarity=-0.007 Sum_probs=299.7
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC--CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhc
Q 035659 55 KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ--PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN 132 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 132 (655)
...+...++..- -++.++..|...|.+.| +.++|+..+++... |+-.-|..++..+ +++.+|..+++++...
T Consensus 64 ~~~l~~Al~~dP-~n~~~~~~LA~~yl~~g--~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 64 IREFEYIHQQVP-DNIPLTLYLAEAYRHFG--HDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQ 137 (987)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHh
Confidence 445555554422 24677788888888888 88888888777653 2212222222222 5555565665555222
Q ss_pred C-------------------------------------CCCCCcchHHHH-HHHHHccCCchHHHHHHHHHHHhCCCCCh
Q 035659 133 S-------------------------------------PYFPNEFTFPFV-IKAAARLVQFRVGQAIHGMVIKSSFEDDL 174 (655)
Q Consensus 133 ~-------------------------------------~~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 174 (655)
. ...|+..+.... ...+.+.++++.+..++..+.+.+ +.+.
T Consensus 138 ~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~ 216 (987)
T PRK09782 138 QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSA 216 (987)
T ss_pred CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCH
Confidence 1 112233333444 566777788888888888888876 4445
Q ss_pred hHHHHHHHHHHh-cCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CCHhhHHHHHHHHhc
Q 035659 175 FISNSLIHFYAI-CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK-PDEVTMVAVLSACAK 252 (655)
Q Consensus 175 ~~~~~li~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~ 252 (655)
.-...|..+|.. .++ ++|..+++...+.|...+..+...|.+.|+.++|.++++++...-.. |...++..++.-+..
T Consensus 217 ~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~ 295 (987)
T PRK09782 217 AERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSA 295 (987)
T ss_pred HHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccC
Confidence 556666677777 366 77777776544567888889999999999999999999988654322 444444433322222
Q ss_pred c------------------------------CccccCCC-----------------------------------------
Q 035659 253 K------------------------------RDLEFGRW----------------------------------------- 261 (655)
Q Consensus 253 ~------------------------------~~~~~~~~----------------------------------------- 261 (655)
. +.++...+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~ 375 (987)
T PRK09782 296 NPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPAN 375 (987)
T ss_pred chhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCC
Confidence 1 11110000
Q ss_pred ----------------hHHHHHHHHHHHH-CC------------------------------------------------
Q 035659 262 ----------------PNEALSIFHELQL-SK------------------------------------------------ 276 (655)
Q Consensus 262 ----------------~~~A~~l~~~m~~-~~------------------------------------------------ 276 (655)
.++|..+|++... .+
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 455 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLP 455 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhh
Confidence 2233333333222 00
Q ss_pred -------------CC-CC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 035659 277 -------------NV-NP--DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340 (655)
Q Consensus 277 -------------~~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (655)
+. ++ +...|..+..++.. ++.++|...+....... |+......+...+.+.|++++|...|
T Consensus 456 ~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 456 GIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 01 12 33344444444443 66677888777766643 55444444455556899999999999
Q ss_pred hhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC
Q 035659 341 HTVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA-VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417 (655)
Q Consensus 341 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 417 (655)
+++.. ++...+..+...+.+.|+.++|..+|++..+.. |+. ..+..+.......|++++|...+++..+ +.|
T Consensus 533 rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P 607 (987)
T PRK09782 533 QKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAP 607 (987)
T ss_pred HHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCC
Confidence 87754 344567777788899999999999999998754 443 3333344455567999999999999984 467
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
+...|..+..++.+.|++++|+..+++. ...|+ ...+..+..++...|+.++|+..++++++..|.++..+..++.++
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8888999999999999999999999986 55565 567788888999999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhCC
Q 035659 496 AKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~~g 515 (655)
...|++++|...+++..+..
T Consensus 688 ~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 688 QRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999887643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.2e-16 Score=172.01 Aligned_cols=188 Identities=9% Similarity=0.032 Sum_probs=122.9
Q ss_pred HHhcCCHHHHHHHHhhcCCCC--hh--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCcH
Q 035659 327 YTKCGNLDKALEVFHTVKSRD--VF--VWSTMIAGFAMYGCGREALDLFSRMQEAKVKP---NAVTFTNVLCACSHSGLV 399 (655)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~ 399 (655)
+...|++++|++.|+.+.+.+ .. .-..+...|...|++++|+..|+++....... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 345577777777777766432 11 11224556777777777777777766532111 123344555566777777
Q ss_pred HHHHHHHHHcchhcC----------ccCC---cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc
Q 035659 400 DEGRMFFNQMEPVYG----------VVPG---VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIH 464 (655)
Q Consensus 400 ~~a~~~~~~~~~~~~----------~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 464 (655)
++|.++++.+.+... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 777777777664310 0112 123455666777888888888888776 2233 456777777788888
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 465 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
|++++|++.++++++++|++...+..++..+...|+|++|.++++.+.+.
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888777653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-16 Score=169.89 Aligned_cols=324 Identities=10% Similarity=-0.036 Sum_probs=162.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 035659 109 LIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188 (655)
Q Consensus 109 li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 188 (655)
++..+.+.|++++|+.+++.. .... +-+...+..++.+....|+++.|.+.++.+++.. +.+...+..+...+.+.|
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~-l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDR-VLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHH-HHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 344445555555555555554 2211 1122233333344444555555555555555543 333444455555555555
Q ss_pred CHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHH
Q 035659 189 DLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265 (655)
Q Consensus 189 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A 265 (655)
++++|...|++..+ .+...|..+...+.+.|++++|...++.+......
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~---------------------------- 176 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP---------------------------- 176 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC----------------------------
Confidence 55555555554433 23334455555555555555555555544333211
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 035659 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345 (655)
Q Consensus 266 ~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 345 (655)
+...+..+ ..+...|++++|...++.+.+....++......+...+.+.|++++|...|+....
T Consensus 177 ---------------~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 177 ---------------RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred ---------------CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11111111 12344445555555544444432112222233334444455555555555554432
Q ss_pred ---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC
Q 035659 346 ---RDVFVWSTMIAGFAMYGCGRE----ALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417 (655)
Q Consensus 346 ---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 417 (655)
.+...+..+...|.+.|++++ |+..|++..+. .| +...+..+...+...|++++|...++...+. .|
T Consensus 241 ~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P 315 (656)
T PRK15174 241 RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HP 315 (656)
T ss_pred cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CC
Confidence 133444555555555555553 56666666653 23 3445556666666667777777766666542 33
Q ss_pred C-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 418 G-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVW-GALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 418 ~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
+ ...+..+..+|.+.|++++|.+.++++ ...|+...+ ..+..++...|+.++|...++++++..|++
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 3 344555666666777777777776665 234443332 234455667777777777777777776654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-15 Score=166.00 Aligned_cols=410 Identities=10% Similarity=-0.034 Sum_probs=293.7
Q ss_pred HHHHhhhcCCCCChHHHHHHhhcCC--CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHHc
Q 035659 75 KLFTPCALGTFSSLEYAREMFDQIP--QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAAR 151 (655)
Q Consensus 75 ~ll~~y~~~g~~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~~ 151 (655)
.+-..|.+.| +++.|+..|++.. .|+...|..+..+|.+.|++++|+..+... .. +.| +...+..+..++..
T Consensus 132 ~~G~~~~~~~--~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~a-l~--l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 132 EKGNKAYRNK--DFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAA-LE--LDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHH-HH--cCCCCHHHHHHHHHHHHH
Confidence 4456677778 9999999998865 467778888999999999999999999988 33 234 45577888889999
Q ss_pred cCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----------------------------
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK---------------------------- 203 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------------------------- 203 (655)
.|++++|..-+..+...+-..+... ..++..+.+......+...++.-+..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999887776655431122211 11111111111112222222211110
Q ss_pred -C---eeHHHHHHHHH---HhCCChhHHHHHHHHHHHCC-CCC-CHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHH
Q 035659 204 -D---VVSWNSMISGF---VQGGFFEKAIELYREMEMEN-VKP-DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQL 274 (655)
Q Consensus 204 -~---~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~ 274 (655)
+ ...+..+...+ ...+++++|++.|++..+.+ ..| +...|..+...+...|+++ +|+..|++...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~------eA~~~~~kal~ 359 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL------EALADLSKSIE 359 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH------HHHHHHHHHHH
Confidence 0 00111111111 12367999999999998875 234 3456778888888899976 99999999987
Q ss_pred CCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhH
Q 035659 275 SKNVNPD-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFV 350 (655)
Q Consensus 275 ~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 350 (655)
. .|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...
T Consensus 360 l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 360 L---DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred c---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 4 455 5688888888999999999999999998874 45678999999999999999999999998864 35677
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCc-ch-------
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV-KH------- 421 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~------- 421 (655)
|..+...+.+.|++++|+..|++.... .| +...+..+...+...|++++|...|+...+. .|+. ..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l 510 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHH
Confidence 888889999999999999999999874 34 4677888888999999999999999998753 3431 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 499 (655)
++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...++++.++.+.....+ ...
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~ 582 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAI 582 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHH
Confidence 122223344579999999999885 55565 45788999999999999999999999999876543322 222
Q ss_pred CchhHHHHHHHHHh
Q 035659 500 KWDNVSELRKHMRV 513 (655)
Q Consensus 500 ~~~~a~~~~~~m~~ 513 (655)
.+.+|.++....++
T Consensus 583 ~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 583 SYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555444444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-15 Score=166.26 Aligned_cols=319 Identities=10% Similarity=0.006 Sum_probs=238.3
Q ss_pred HHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHHc
Q 035659 76 LFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAAR 151 (655)
Q Consensus 76 ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~~ 151 (655)
++....+.| ++++|..+++.... .+...+..++.+....|++++|+..|+++ .. ..| +...+..+...+..
T Consensus 48 ~~~~~~~~g--~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~-l~--~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 48 FAIACLRKD--ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKL-LA--VNVCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHhcC--CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHH-HH--hCCCChHHHHHHHHHHHH
Confidence 344556677 99999999887642 34445666667778899999999999999 33 234 44567777788899
Q ss_pred cCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-eeHHHHHHHHHHhCCChhHHHHHH
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KD-VVSWNSMISGFVQGGFFEKAIELY 228 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~ 228 (655)
.|+++.|...++.+++.. +.+...+..+...|...|++++|...++.+.. |+ ...+..+ ..+.+.|++++|+..+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 999999999999999874 55677889999999999999999999987643 33 3344333 4488899999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHH----HHHH
Q 035659 229 REMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI----GVQI 304 (655)
Q Consensus 229 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~----a~~~ 304 (655)
+.+.+....++...+..+..++...|+.+ +|+..|++..... +.+...+..+..++...|++++ |...
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~------eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQ------EAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHH------HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 99877654444555555667777888866 8888888887653 4456677777788888888875 7888
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 035659 305 HAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381 (655)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (655)
++++.+.. +.+..++..+...+.+.|++++|...+++..+ .+...+..+...|.+.|++++|+..|+++... .|
T Consensus 273 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P 349 (656)
T PRK15174 273 WRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KG 349 (656)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cc
Confidence 88888764 44667788888888888888888888887653 24556777777888888888888888888764 34
Q ss_pred CHHH-HHHHHHHHHccCcHHHHHHHHHHcchh
Q 035659 382 NAVT-FTNVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 382 ~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
+... +..+..++...|+.++|...|+...+.
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4433 333455677788888888888877643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-15 Score=169.85 Aligned_cols=407 Identities=11% Similarity=0.024 Sum_probs=297.7
Q ss_pred hhhhhHHHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHH
Q 035659 70 PYSASKLFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146 (655)
Q Consensus 70 ~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll 146 (655)
+...+-.+......| +.++|++++.+... .+...+..+...+.+.|++++|..+|++.+... +.+...+..+.
T Consensus 15 ~~~~~d~~~ia~~~g--~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la 90 (765)
T PRK10049 15 NNQIADWLQIALWAG--QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLI 90 (765)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 333444555667778 99999999988653 344458889999999999999999999973332 22345566777
Q ss_pred HHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CeeHHHHHHHHHHhCCChhH
Q 035659 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVQGGFFEK 223 (655)
Q Consensus 147 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~ 223 (655)
..+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+.+.+..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 78889999999999999999884 55566 88889999999999999999998865 3 45567778888889999999
Q ss_pred HHHHHHHHHHCCCCCCH------hhHHHHHHHHhccCccccCCC--hHHHHHHHHHHHHCCCCCCCHH-HHH----HHHH
Q 035659 224 AIELYREMEMENVKPDE------VTMVAVLSACAKKRDLEFGRW--PNEALSIFHELQLSKNVNPDEF-TFV----SVLS 290 (655)
Q Consensus 224 A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~~~~--~~~A~~l~~~m~~~~~~~p~~~-t~~----~ll~ 290 (655)
|++.++.... .|+. .....++......+..+.++. .++|++.++.+.....-.|+.. .+. ..+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9998886654 2331 111222222222111110000 1478888988886421233321 111 1134
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHcC
Q 035659 291 ACAQLGAMDIGVQIHAKMKKQGIK-LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD-------VFVWSTMIAGFAMYG 362 (655)
Q Consensus 291 ~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g 362 (655)
++...|+.++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+.+ ...+..+..++.+.|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 556779999999999999987632 321 22335778999999999999999976432 234566677889999
Q ss_pred ChHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH
Q 035659 363 CGREALDLFSRMQEAKV-----------KPNA---VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428 (655)
Q Consensus 363 ~~~~A~~~~~~m~~~g~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~ 428 (655)
++++|..+++++..... .|+. ..+..+...+...|+.++|+++++++... .+.+...+..+..+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l 402 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASV 402 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999987521 1332 23455667788999999999999999863 33346788899999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 429 LGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
+...|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.+.
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999987 55676 56777777888999999999999999999999987544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-14 Score=157.22 Aligned_cols=418 Identities=10% Similarity=0.043 Sum_probs=298.3
Q ss_pred hhcCCCCChHHHHHHhhcCCCCCcc---hHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHH---HHHHHccC
Q 035659 80 CALGTFSSLEYAREMFDQIPQPNLY---TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV---IKAAARLV 153 (655)
Q Consensus 80 y~~~g~~~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~l---l~~~~~~~ 153 (655)
..+.| +++.|+..|++..+.+.. ....++..+...|+.++|+..+++. . .|+...+..+ ...+...|
T Consensus 44 ~~r~G--d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka-~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 44 RARAG--DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERY-Q----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHhCC--CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHh-c----cCCCCCHHHHHHHHHHHHHcC
Confidence 36778 999999999998753333 2338888888999999999999988 3 4444433333 44677789
Q ss_pred CchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHh--CCChhHHHHHHHHH
Q 035659 154 QFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQ--GGFFEKAIELYREM 231 (655)
Q Consensus 154 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m 231 (655)
+++.|.++++.+++.. +.+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999999986 55577788889999999999999999999987544333334445444 56666699999999
Q ss_pred HHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHH------HHHHHHH-----hccCC---
Q 035659 232 EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF------VSVLSAC-----AQLGA--- 297 (655)
Q Consensus 232 ~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~------~~ll~~~-----~~~g~--- 297 (655)
.+.. +-+...+..+..+..+.|-.. .|+++..+-..- +.+...-. ...+.-- ....+
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~------~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVE------PALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcH------HHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9874 334666778888888888755 677665543311 22221111 1111100 01122
Q ss_pred HHHHHHHHHHHHHc-C-CCCchhh-HHH---HHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHHcCChHHH
Q 035659 298 MDIGVQIHAKMKKQ-G-IKLNCYL-TTS---LIDMYTKCGNLDKALEVFHTVKSR----DVFVWSTMIAGFAMYGCGREA 367 (655)
Q Consensus 298 ~~~a~~~~~~~~~~-g-~~~~~~~-~~~---li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A 367 (655)
.+.|..-++.+... + .++.... ..+ .+-++.+.|+..++++.|+.+... ...+--++..+|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 33444445554442 1 1222122 223 344567889999999999999853 234566778899999999999
Q ss_pred HHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcC----------ccCC---cchHHHHHHHH
Q 035659 368 LDLFSRMQEAK-----VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG----------VVPG---VKHYTCMVDML 429 (655)
Q Consensus 368 ~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~y~~li~~~ 429 (655)
+.+|+++.... ..++......|.-++..++++++|..+++.+.+... -.|+ ...+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999986643 122333356788899999999999999999976311 0122 23345567788
Q ss_pred HhcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 430 GRAGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
...|++.+|++.++++ ... -|...+..+...+...|++..|++.++.+..++|.+..+....+..+...|+|.+|.++
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8999999999999997 223 36778889999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhC
Q 035659 508 RKHMRVS 514 (655)
Q Consensus 508 ~~~m~~~ 514 (655)
.+...+.
T Consensus 507 ~~~l~~~ 513 (822)
T PRK14574 507 TDDVISR 513 (822)
T ss_pred HHHHHhh
Confidence 8777653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-13 Score=131.61 Aligned_cols=401 Identities=16% Similarity=0.170 Sum_probs=270.7
Q ss_pred cHHHHHHHhcC--cchHHHHHHHHHHhCCCCChhhhhHHHHh---hhcCCC----------------------CChHHHH
Q 035659 40 PVFSLIKQCKN--IKQLKQIHTQMLRTGLFFDPYSASKLFTP---CALGTF----------------------SSLEYAR 92 (655)
Q Consensus 40 ~~~~ll~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~ll~~---y~~~g~----------------------~~~~~A~ 92 (655)
+=++|++.-++ ..|.--+++.|...|.+.+..+.-.|+.. |....- .+=+-|.
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 34455544333 23447889999999988777766665543 322210 0002233
Q ss_pred HHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCC
Q 035659 93 EMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED 172 (655)
Q Consensus 93 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 172 (655)
-+|+..| +...++..||.|+++-...+.|.+++.+. .....+.+..+||.+|.+.+- ..++++..+|+...+.|
T Consensus 198 L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 198 LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEH-RAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHH-HHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 3344333 34467778888888777777888888777 666667777788877776543 23377777777777778
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 035659 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252 (655)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (655)
|.+++|+++.+.++.|+++.|++. |++++.+|++.|+.|...+|..+|..+.+
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 888888888877777777777643 57889999999999999999999999998
Q ss_pred cCccccCCChHHHHHHHHHHHHC--C-CC---CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----CCCc---hh
Q 035659 253 KRDLEFGRWPNEALSIFHELQLS--K-NV---NP-DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG----IKLN---CY 318 (655)
Q Consensus 253 ~~~~~~~~~~~~A~~l~~~m~~~--~-~~---~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g----~~~~---~~ 318 (655)
.++.. ..|..++.+++.+ | .+ .| |...|...++.|.+..+.+.|.+++.-+.... +.++ ..
T Consensus 325 e~dp~-----k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~f 399 (625)
T KOG4422|consen 325 ESDPQ-----KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNF 399 (625)
T ss_pred cCCch-----hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHH
Confidence 88753 1455566555432 1 02 23 56678999999999999999999998776421 2232 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKS----RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 394 (655)
-|..+....|+...++.-...|+.|.. ++..+...++.+..-.|+++-.-+++..|+..|..-+...-..++..++
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 567788888999999999999999875 4666777778888888888888888888887764444443333333333
Q ss_pred ccC--------------------cHHHHH-HHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------C
Q 035659 395 HSG--------------------LVDEGR-MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-------P 446 (655)
Q Consensus 395 ~~g--------------------~~~~a~-~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-------~ 446 (655)
+.. ++.++. .--.++. ...-.....++..-.+.|.|+.++|.+++.-. +
T Consensus 480 ~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 480 RDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 322 111111 1111122 22334456778888889999999998888654 3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 035659 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELE 481 (655)
Q Consensus 447 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 481 (655)
..|......-++.+..+.++...|..+++-+...+
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 44555455566777778888888888888886655
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-13 Score=153.15 Aligned_cols=450 Identities=10% Similarity=0.024 Sum_probs=310.8
Q ss_pred HHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhc-CCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcH
Q 035659 45 IKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCAL-GTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120 (655)
Q Consensus 45 l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~-~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 120 (655)
.+.+...++. ..++..+.+.+.. +......|-.+|.. .+ + +.|..+++...+.|...+..+...|.+.|+.+
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~--~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~ 264 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQL--D-DRLLALQSQGIFTDPQSRITYATALAYRGEKA 264 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhC--H-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHH
Confidence 5556666664 4555556665532 34446666667777 46 6 88888877655567888889999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCcchHHHHH------------------------------HHHHccCCchHHHHHH--------
Q 035659 121 QSFMIFLQLVYNSPYFPNEFTFPFVI------------------------------KAAARLVQFRVGQAIH-------- 162 (655)
Q Consensus 121 ~A~~~~~~m~~~~~~~pd~~t~~~ll------------------------------~~~~~~~~~~~a~~~~-------- 162 (655)
+|..+++++.....-.|+..++.-++ ..+.+.++++.++++.
T Consensus 265 ~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (987)
T PRK09782 265 RLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM 344 (987)
T ss_pred HHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH
Confidence 99999888722211124333332222 2223333333333221
Q ss_pred ---------------------HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----eeHHHHHHHHH
Q 035659 163 ---------------------GMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KD----VVSWNSMISGF 215 (655)
Q Consensus 163 ---------------------~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~ 215 (655)
..+.+.. +-+....--+.-...+.|+.++|.++|+..-. ++ ...-+-++..|
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 1111110 11222222233344567888888888877654 22 22344667777
Q ss_pred HhCCC---hhHHHHH------------HH----------HHHHC-CC-CC--CHhhHHHHHHHHhccCccccCCChHHHH
Q 035659 216 VQGGF---FEKAIEL------------YR----------EMEME-NV-KP--DEVTMVAVLSACAKKRDLEFGRWPNEAL 266 (655)
Q Consensus 216 ~~~g~---~~~A~~~------------~~----------~m~~~-g~-~p--~~~t~~~ll~~~~~~~~~~~~~~~~~A~ 266 (655)
.+.+. ..+++.+ .. ..... +. ++ +...|..+..++.. ++.. +|+
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~------eAi 496 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG------VAL 496 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH------HHH
Confidence 77665 3333333 11 11111 12 23 45566666666665 5543 899
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 035659 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346 (655)
Q Consensus 267 ~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 346 (655)
..|.+... ..|+......+..++...|++++|...++++... +|+...+..+...+.+.|+.++|.+.|+...+.
T Consensus 497 ~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 497 YAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 98888776 3477655545555667899999999999998664 344555677788899999999999999988765
Q ss_pred ChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchH
Q 035659 347 DVFVWSTMI---AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHY 422 (655)
Q Consensus 347 ~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y 422 (655)
+...++... ......|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...++.... ..|+ ...+
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~ 646 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQ 646 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHH
Confidence 443333333 333445999999999999998 467888899999999999999999999999985 3565 6678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 035659 423 TCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 423 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 500 (655)
..+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++..+....+....+..+
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH
Confidence 88888999999999999999986 4455 467899999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhCCC
Q 035659 501 WDNVSELRKHMRVSGL 516 (655)
Q Consensus 501 ~~~a~~~~~~m~~~g~ 516 (655)
++.|.+-++.......
T Consensus 727 ~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 727 FRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHhhcCc
Confidence 9999988877665444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-12 Score=140.84 Aligned_cols=421 Identities=10% Similarity=0.007 Sum_probs=303.9
Q ss_pred HHHHHHHHHhCCCCC--hhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHH---HHHHHhCCCcHHHHHHHHHh
Q 035659 55 KQIHTQMLRTGLFFD--PYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTL---IRAYSSSAEPIQSFMIFLQL 129 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~--~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m 129 (655)
...+..+++. .|+ +.++ .++..+...| +.++|+..+++...|+...+..+ ...|...|++++|+++|+++
T Consensus 54 l~~L~qaL~~--~P~~~~av~-dll~l~~~~G--~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ka 128 (822)
T PRK14574 54 LDYLQEESKA--GPLQSGQVD-DWLQIAGWAG--RDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSS 128 (822)
T ss_pred HHHHHHHHhh--CccchhhHH-HHHHHHHHcC--CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444443 333 2344 8888888889 99999999999887655444433 34677889999999999999
Q ss_pred hhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Cee
Q 035659 130 VYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--K-DVV 206 (655)
Q Consensus 130 ~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~ 206 (655)
+... +-|...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|.+.++++.+ | +..
T Consensus 129 L~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 129 LKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred HhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 4433 223455667778888999999999999999877 45566666666666566777679999999875 4 566
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH------HHHHHHHh-ccCcc-ccCCChHHHHHHHHHHHHCCCC
Q 035659 207 SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM------VAVLSACA-KKRDL-EFGRWPNEALSIFHELQLSKNV 278 (655)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~~~~-~~~~~-~~~~~~~~A~~l~~~m~~~~~~ 278 (655)
.+..+...+.+.|-...|+++..+-... +.+...-+ ...++.-. ..... +.-...+.|+.-++.+...-+-
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~ 283 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGK 283 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccC
Confidence 7788999999999999999877653321 11111111 11111100 00000 0000145677777777653222
Q ss_pred CCC-HH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-------
Q 035659 279 NPD-EF----TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR------- 346 (655)
Q Consensus 279 ~p~-~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 346 (655)
.|. .. ...-.+-++...++..++.+.++.+...+.+.-..+-.++.++|...++.++|..+|+.+...
T Consensus 284 ~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~ 363 (822)
T PRK14574 284 DPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRN 363 (822)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCC
Confidence 232 22 222445678889999999999999999887766778899999999999999999999998542
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-------------CCCHHH-HHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 347 --DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV-------------KPNAVT-FTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 347 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
+......|.-+|...+++++|..+++++.+... .||-.. +..++..+...|++.+|++.++.+.
T Consensus 364 ~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~ 443 (822)
T PRK14574 364 SDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS 443 (822)
T ss_pred CcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233357788999999999999999999987311 123333 3344566889999999999999997
Q ss_pred hhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 411 ~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
.. -+-|......+.+.+...|+..+|++.++.. ...|+ ..+....+.++...+++.+|..+.+.+++..|++..+
T Consensus 444 ~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 444 ST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred Hh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 53 3446888999999999999999999999776 34555 5666777888889999999999999999999998744
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.5e-13 Score=138.83 Aligned_cols=431 Identities=13% Similarity=0.078 Sum_probs=309.5
Q ss_pred CChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCC------cchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcch
Q 035659 68 FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN------LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFT 141 (655)
Q Consensus 68 ~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t 141 (655)
.+|.+.|.|-+.|-.-| ++..+..+...+...+ ..+|--+-++|-..|++++|...|.+. .. ..||.++
T Consensus 268 ~nP~~l~~LAn~fyfK~--dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s-~k--~~~d~~~ 342 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKK--DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES-LK--ADNDNFV 342 (1018)
T ss_pred CCcHHHHHHHHHHhhcc--cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH-Hc--cCCCCcc
Confidence 47778888888888888 8888777766654322 234666778888889999998888776 32 3455544
Q ss_pred HH--HHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----CHHHHHHHHhhcCCC---CeeHHHHHH
Q 035659 142 FP--FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG----DLAMAYCVFVMIGKK---DVVSWNSMI 212 (655)
Q Consensus 142 ~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~f~~~~~~---~~~~~~~li 212 (655)
++ -+...+.+.|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+..++ |..+|-.+.
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la 421 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA 421 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 43 45567788888999998888888874 555666667777777665 566777777766654 555676666
Q ss_pred HHHHhCCChhHHHHHHHHH----HHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCC--CCCCH----
Q 035659 213 SGFVQGGFFEKAIELYREM----EMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN--VNPDE---- 282 (655)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~--~~p~~---- 282 (655)
..|-+. +...++.+|... ...+-.+.....|.+.......|++. +|...|.+....-. ..+|.
T Consensus 422 ql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~------~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 422 QLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE------KALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH------HHHHHHHHHhhhhhhhcCccccccc
Confidence 666555 444447777654 45566688889999999999999977 99999988765410 22333
Q ss_pred -H-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 035659 283 -F-TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAG 357 (655)
Q Consensus 283 -~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 357 (655)
. +--.+....-..++.+.|.++|..+++.. +.-+..|--|+.+-...+...+|...++.+.. .|+..|+-+...
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 2 22233444556679999999999998864 22233344444344445778888888888764 577788888888
Q ss_pred HHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHc------------cCcHHHHHHHHHHcchhcCccCCcchHHH
Q 035659 358 FAMYGCGREALDLFSRMQEA-KVKPNAVTFTNVLCACSH------------SGLVDEGRMFFNQMEPVYGVVPGVKHYTC 424 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~y~~ 424 (655)
|.....+..|.+-|....+. ...+|..+..+|.+.|.. .+..++|+++|.++.+. -+.|...-+.
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANG 651 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANG 651 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccc
Confidence 88888888888877766543 233677777777665542 24567888888887752 2345666777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCcchHHHHHHHHHhcCC
Q 035659 425 MVDMLGRAGLLDEAVEFIEKMP--IVPGASVWGALLGACKIHENVELAEYACSHLLELE--PENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 500 (655)
+.-.++..|++.+|..+|.+.. ......+|-.+...|...|++..|+++|+..++.. .+++.....|+.++.+.|+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 8888999999999999998872 22355789999999999999999999999998864 4566788889999999999
Q ss_pred chhHHHHHHHHHhC
Q 035659 501 WDNVSELRKHMRVS 514 (655)
Q Consensus 501 ~~~a~~~~~~m~~~ 514 (655)
|.+|.+........
T Consensus 732 ~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 732 LQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999887766553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-11 Score=128.01 Aligned_cols=460 Identities=12% Similarity=0.063 Sum_probs=321.3
Q ss_pred HHHHHHHhcCcc--hH---HHHHHHHHHh--CCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHH
Q 035659 41 VFSLIKQCKNIK--QL---KQIHTQMLRT--GLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAY 113 (655)
Q Consensus 41 ~~~ll~~~~~~~--~~---~~~~~~~~~~--g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~ 113 (655)
+..+.+||.... +. -.++..++.. ...||+.+.-. ..+.++| +.+.|+..|.+..+-|+..-++++...
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~--~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLG--MSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhcc--chhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 344556665544 22 3444443332 44566655433 3456777 999999999998876655555554321
Q ss_pred H------hCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC--hhHHHHHHHHHH
Q 035659 114 S------SSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD--LFISNSLIHFYA 185 (655)
Q Consensus 114 ~------~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~ 185 (655)
. ....+..+++++.......+ -|+...+.|-+-+.-.|+.+.+..+...++....... ...|--+..+|-
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 1 22345667777776633332 3666778888888899999999999998887652222 234667889999
Q ss_pred hcCCHHHHHHHHhhcCC--C-C-eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCC
Q 035659 186 ICGDLAMAYCVFVMIGK--K-D-VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW 261 (655)
Q Consensus 186 ~~g~~~~A~~~f~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~ 261 (655)
..|++++|...|.+... + + +..+--+...|.+.|+.+.+...|+...+.. +-+..|...+...|...+.-. ..
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~--~~ 395 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQ--EK 395 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhh--HH
Confidence 99999999999977654 2 3 4556678899999999999999999988752 334567777777777664111 01
Q ss_pred hHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH----HcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 035659 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK----KQGIKLNCYLTTSLIDMYTKCGNLDKAL 337 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~ 337 (655)
.++|..++.+.... .+.|...|..+...+-. ++.......+..+. ..+-.+-+.+.|.+...+...|++++|.
T Consensus 396 ~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHhc--ccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 34777777777654 35566677766666544 44444466665554 4555678889999999999999999999
Q ss_pred HHHhhcCCC-------Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHH
Q 035659 338 EVFHTVKSR-------DV------FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV-TFTNVLCACSHSGLVDEGR 403 (655)
Q Consensus 338 ~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 403 (655)
..|+..... |. .+--.+...+-..++.+.|.+.|+..... .|+.+ .|..++......+...+|.
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHH
Confidence 999876532 22 12333455566678899999999999884 46544 3444443334457888999
Q ss_pred HHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHH----hCCCCCChhHHHHHHHHHH------------hcCCH
Q 035659 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE----KMPIVPGASVWGALLGACK------------IHENV 467 (655)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~----~m~~~p~~~~~~~ll~~~~------------~~g~~ 467 (655)
..++.+.. ....++..++.+.+.+.+...+..|.+-|+ +....+|..+.-+|.+.|. ..+..
T Consensus 551 ~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 551 LLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 99988876 455666778788888888888888877444 4334467777777777553 23457
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 468 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
+.|++.|.++++.+|.|..+-+-++.+++..|+|.+|..+|.++++...
T Consensus 629 ~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 8899999999999999988888899999999999999999999998765
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-12 Score=126.32 Aligned_cols=382 Identities=14% Similarity=0.107 Sum_probs=261.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCC------------C
Q 035659 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED------------D 173 (655)
Q Consensus 106 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~ 173 (655)
.|.+--.+.+.|.++.|+..|+..+.. .||-.+-..|+-.+...|+-+..++.|..|+.....+ +
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 344445678899999999999887333 4777766666666777889999999999988754322 2
Q ss_pred hhHHHHHH-----HHHHhcCC--HHHHHHHHhhc----CCCCee---HH----------H--------HHHHHHHhCCCh
Q 035659 174 LFISNSLI-----HFYAICGD--LAMAYCVFVMI----GKKDVV---SW----------N--------SMISGFVQGGFF 221 (655)
Q Consensus 174 ~~~~~~li-----~~~~~~g~--~~~A~~~f~~~----~~~~~~---~~----------~--------~li~~~~~~g~~ 221 (655)
....|--| .-.-+.+. -+++.-.--++ ..||.. -| . .-..-|.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22222222 11111111 11221111122 222211 01 0 112347889999
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHH
Q 035659 222 EKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIG 301 (655)
Q Consensus 222 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a 301 (655)
+.|+++++-+....-+.-...-+.|...+.-.|.-+ +.+|..+-+...... .-|....+.-.+.....|++++|
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~----~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKD----FADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccc----hhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHH
Confidence 999999988876644333333333332222222211 336666555554332 22333333333445567899999
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 035659 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378 (655)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 378 (655)
.+.|.+.+...-.-....|| +.-.+-+.|++++|++.|-.+. ..++...-.+...|-...+..+|++++.+....
T Consensus 510 ~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 99999998865333334444 4445778899999999998765 357777788888999999999999999887763
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHH
Q 035659 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGAL 457 (655)
Q Consensus 379 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 457 (655)
++.|+..+.-|...|-+.|+-.+|.+.+-.--. -+..+.++...|..-|....-+++|+.+|++. -++|+.+-|..+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 445677778888889999999999987765432 34456888888988999999999999999997 578999999999
Q ss_pred HHHH-HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 035659 458 LGAC-KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 458 l~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 500 (655)
+..| ++.|++..|..+++.....-|.+......|..++...|.
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8765 678999999999999999999999999999998888774
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-11 Score=120.41 Aligned_cols=385 Identities=15% Similarity=0.094 Sum_probs=261.3
Q ss_pred HHHHHHHhCCCcHHHHHHHHHhhhcCCCCCC-cchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH
Q 035659 108 TLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN-EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD-LFISNSLIHFYA 185 (655)
Q Consensus 108 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~ 185 (655)
..-+-|-++|.+++|++.|.+.+ . ..|| +..|...-.+|...|+|+.+.+--...++.. |+ +..+..-..++-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI-~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAI-E--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHH-h--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 33455678899999999999883 3 4678 5666666677788899999888888777664 44 456666777888
Q ss_pred hcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHH---------HHHC--CCCCCHhhHHHHHHHHhccC
Q 035659 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE---------MEME--NVKPDEVTMVAVLSACAKKR 254 (655)
Q Consensus 186 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~--g~~p~~~t~~~ll~~~~~~~ 254 (655)
..|++++|+.= +|-..+..+|..+.-.--+.+++++ |.+. .+.|+.....+....+-..-
T Consensus 195 ~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 88888887642 2223333333333222223333322 1111 23455444444433332211
Q ss_pred cc---ccCCC-------------------hHHHHHHHHHHHHCCCCCCCHH---------HHHHHHHH--HhccCCHHHH
Q 035659 255 DL---EFGRW-------------------PNEALSIFHELQLSKNVNPDEF---------TFVSVLSA--CAQLGAMDIG 301 (655)
Q Consensus 255 ~~---~~~~~-------------------~~~A~~l~~~m~~~~~~~p~~~---------t~~~ll~~--~~~~g~~~~a 301 (655)
.. ..+.. +.+|...+.+-.......++.- .-..++.+ +.-.|+.-.+
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 00 00000 2223322222211110111111 11111111 2345788889
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 035659 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378 (655)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 378 (655)
.+-++..++... .+...|--+..+|....+.++..+.|+.... .|..+|..-...+.-.+++++|..=|++.+.
T Consensus 346 ~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~-- 422 (606)
T KOG0547|consen 346 QEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS-- 422 (606)
T ss_pred hhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 999999988753 2333477788889999999999999998764 4667888888888888999999999999998
Q ss_pred CCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC------
Q 035659 379 VKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG------ 450 (655)
Q Consensus 379 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~------ 450 (655)
+.| +...|..+..+..+.+.++++...|++..++ +...++.|+.....+...+++++|.+.|+.. .++|+
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v 500 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV 500 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc
Confidence 455 4567777877888999999999999999874 4555789999999999999999999999885 34443
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 451 ---ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 451 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
+.+-..++..-.+ +++..|+.+++++++++|....+|..|+..-...|+.++|+++|++-.
T Consensus 501 ~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445544444 899999999999999999999999999999999999999999998754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-11 Score=116.06 Aligned_cols=339 Identities=15% Similarity=0.097 Sum_probs=234.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 035659 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK----DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246 (655)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 246 (655)
+.+..++..+|.+.+|-...+.|.+++++-... +..+||.+|.+-.-. .-.+++.+|....+.||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 556778899999999999999999999877653 556778877654332 226788999999999999999999
Q ss_pred HHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHH----cCCCC----ch
Q 035659 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDI-GVQIHAKMKK----QGIKL----NC 317 (655)
Q Consensus 247 l~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~----~g~~~----~~ 317 (655)
++..++.|+++.++. .|++++.+|.+-| +.|...+|..+|..+++.++..+ +..+...+.. ..++| |.
T Consensus 280 L~c~akfg~F~~ar~--aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARK--AALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHhcchHHHHH--HHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999998876654 7888899999888 99999999999998888877644 4444444433 22222 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 035659 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSR-----------DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 386 (655)
..+..-++.+....+.+-|.++-.-+... ...-|..+....++....+.-+.+|+.|.-.-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 45666677777888888888876655432 1234666778888888899999999999988788999999
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcC---------CHHH-----HHHHHH-------hC
Q 035659 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG---------LLDE-----AVEFIE-------KM 445 (655)
Q Consensus 387 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g---------~~~~-----A~~~~~-------~m 445 (655)
..+++|..-.|.++-.-+++..++. +|...+...-.-+...+++.. ++.. |..+++ +|
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999888888888888877765 354444333333444444433 1111 111111 11
Q ss_pred -CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---CCCcc--hHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 035659 446 -PIVPGASVWGALLGACKIHENVELAEYACSHLLELE---PENHG--ALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517 (655)
Q Consensus 446 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 517 (655)
...-.....+..+-.+.+.|..++|-+++..+.+.. |..+. +..-+.+.-........|..+++.|...+..
T Consensus 516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 122234455666666778888999988888886543 33322 2223444444556677788888888665543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-11 Score=128.42 Aligned_cols=315 Identities=16% Similarity=0.145 Sum_probs=181.7
Q ss_pred CCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCCeeHHHHHHHHHHhCCChhHHHHHHH
Q 035659 153 VQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI---GKKDVVSWNSMISGFVQGGFFEKAIELYR 229 (655)
Q Consensus 153 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 229 (655)
|++++|..++.++++.. +.....|..|...|-..|+.+++...+-.. ...|..-|-.+..-..+.|.+++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555555543 334445555555555555555555444222 22344445555555555555555555555
Q ss_pred HHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 035659 230 EMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMK 309 (655)
Q Consensus 230 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 309 (655)
+.++.. +++...+---...|-+.|+...|..-+.++.
T Consensus 232 rAI~~~-------------------------------------------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~ 268 (895)
T KOG2076|consen 232 RAIQAN-------------------------------------------PSNWELIYERSSLYQKTGDLKRAMETFLQLL 268 (895)
T ss_pred HHHhcC-------------------------------------------CcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 554432 2232333333333444444444444444444
Q ss_pred HcCCCCchh----hHHHHHHHHHhcCCHHHHHHHHhhcCC--C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--
Q 035659 310 KQGIKLNCY----LTTSLIDMYTKCGNLDKALEVFHTVKS--R---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-- 378 (655)
Q Consensus 310 ~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 378 (655)
....+.|.. ..-..+..|...++-+.|.+.++.... . +...++.++..|.....++.|......+....
T Consensus 269 ~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e 348 (895)
T KOG2076|consen 269 QLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESE 348 (895)
T ss_pred hhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccC
Confidence 432111111 111123333344444555555444432 1 23345555555555555555555555554411
Q ss_pred -------------------------CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcC--ccCCcchHHHHHHHHHh
Q 035659 379 -------------------------VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG--VVPGVKHYTCMVDMLGR 431 (655)
Q Consensus 379 -------------------------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~y~~li~~~~~ 431 (655)
+.++...+ .+.-++.+....+....+.....+. . ..-+...|.-+.++|.+
T Consensus 349 ~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~ 426 (895)
T KOG2076|consen 349 KDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTN 426 (895)
T ss_pred CChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHh
Confidence 22222221 1222334444444444344433332 4 33357789999999999
Q ss_pred cCCHHHHHHHHHhC---CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHH
Q 035659 432 AGLLDEAVEFIEKM---PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELR 508 (655)
Q Consensus 432 ~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 508 (655)
.|++.+|+.+|..+ +...+..+|--+..+|...|.+++|.+.+++++...|.+..+-..|+.+|.+.|+.++|.+++
T Consensus 427 ~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 427 IGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred cccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHH
Confidence 99999999999988 223357799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 035659 509 KHMRV 513 (655)
Q Consensus 509 ~~m~~ 513 (655)
..|..
T Consensus 507 ~~~~~ 511 (895)
T KOG2076|consen 507 EQIIN 511 (895)
T ss_pred hcccC
Confidence 88763
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-09 Score=108.46 Aligned_cols=452 Identities=12% Similarity=0.032 Sum_probs=253.1
Q ss_pred hHHHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCC---CCCcchHHHHHHHHHhCCCcHHHHHHHHHh
Q 035659 53 QLKQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP---QPNLYTWNTLIRAYSSSAEPIQSFMIFLQL 129 (655)
Q Consensus 53 ~~~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 129 (655)
+.+-++...++. .+.+.. |.-+|++.. -++.|.+++.... ..+...|-+-...=-.+|..+....+..+-
T Consensus 394 darilL~rAvec-cp~s~d----LwlAlarLe--tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 394 DARILLERAVEC-CPQSMD----LWLALARLE--TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred HHHHHHHHHHHh-ccchHH----HHHHHHHHH--HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 335555555543 122333 334556666 7888888887654 346667766655555677777666665442
Q ss_pred h---hcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 035659 130 V---YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD--LFISNSLIHFYAICGDLAMAYCVFVMIGK-- 202 (655)
Q Consensus 130 ~---~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~~-- 202 (655)
+ +..|+..+...|-.=..+|-..|..-.+..+....+..|++.. -.+|+.-.+.+.+.+.++-|+.+|....+
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 1 4567777777776666667667777777777776666665332 34566666666666666666666655443
Q ss_pred -CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC
Q 035659 203 -KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281 (655)
Q Consensus 203 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~ 281 (655)
.+...|...+..--..|..++-..+|++.... ++-....|......+-..|++. .|..++.+..+.. +-+
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~------~ar~il~~af~~~--pns 617 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVP------AARVILDQAFEAN--PNS 617 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcH------HHHHHHHHHHHhC--CCc
Confidence 23344444444444445555555555554443 1112222333333333344433 4444444443321 122
Q ss_pred HHHHHHHHHHHhccCC---------------------------------HHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 035659 282 EFTFVSVLSACAQLGA---------------------------------MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~---------------------------------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 328 (655)
...+.+.+..-..... .++|.+++++.++. ++.-...|-.+.+.+-
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 3344444444444444 44555554444443 2222334444444444
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 035659 329 KCGNLDKALEVFHTVKS--R-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 405 (655)
+.++++.|++.|..-.+ | .+..|-.+...=-+.|....|..+|++.+..+. -|...|...|..-.+.|+.+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHH
Confidence 44555555444443332 1 233444444444444455555555555444321 2444455555555555555555555
Q ss_pred HHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 406 ~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
..+..+ ....+...|..-|.+..+.++-..+.+.+++. +.|+.+.-++...+....+++.|.+.|.++++.+|++.
T Consensus 776 makALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 776 MAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 554443 22333444444444444444444444444443 45677777788888889999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeEEEEC
Q 035659 486 GALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528 (655)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~ 528 (655)
.+|..+...+...|.-++-.++++..... .|.-|..|.-+.
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 99999999999999999999998877653 355566666443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=136.88 Aligned_cols=257 Identities=18% Similarity=0.192 Sum_probs=114.3
Q ss_pred HHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHH
Q 035659 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV-SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323 (655)
Q Consensus 245 ~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 323 (655)
.+...+.+.|+++ +|++++++..... .+|+...|- .+...+-..++.+.|.+.++++...+ +.++..+..+
T Consensus 13 ~~A~~~~~~~~~~------~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l 84 (280)
T PF13429_consen 13 RLARLLYQRGDYE------KALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc------ccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 4466777788866 9999996554332 245555544 44455667899999999999999876 3366677788
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCcHH
Q 035659 324 IDMYTKCGNLDKALEVFHTVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAVTFTNVLCACSHSGLVD 400 (655)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~ 400 (655)
+.. ...+++++|.++++..-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.+
T Consensus 85 ~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 85 IQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred ccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 877 789999999999887643 466778888999999999999999999987542 3456777888888899999999
Q ss_pred HHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
+|...++...+. .|+ ......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|...++++
T Consensus 164 ~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 164 KALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence 999999999864 665 778889999999999999988888765 12456778999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 478 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.+..|+|+.....++.++...|+.++|.++++...+
T Consensus 241 ~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999876543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-10 Score=118.70 Aligned_cols=123 Identities=9% Similarity=0.021 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHH
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLG 459 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~ 459 (655)
+......+..++...|+.++|..+++...+. .|+... .++.+....++.+++.+.+++. ...|+ +..+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3334444444445555555555554444321 222211 1111112234445554444443 22222 333444455
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
.|...+++++|.+.|+++++..|++ ..+..++.++.+.|+.++|.+++++
T Consensus 337 l~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555555555555555532 3344555555555555555555543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-09 Score=114.24 Aligned_cols=347 Identities=15% Similarity=0.168 Sum_probs=259.2
Q ss_pred hhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHHccCCc
Q 035659 80 CALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQF 155 (655)
Q Consensus 80 y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~~~~~~ 155 (655)
|++ | ++++|.+++.++.+ .+...|-+|-..|-+.|+.++++..+-.. ....| |..-|..+-.-..+.|.+
T Consensus 150 far-g--~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA---AHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 150 FAR-G--DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA---AHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHh-C--CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH---HhcCCCChHHHHHHHHHHHhcccH
Confidence 455 7 99999999999864 46678999999999999999999887654 22344 566777888888899999
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCe-e-------HHHHHHHHHHhCCChhHHHHH
Q 035659 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDV-V-------SWNSMISGFVQGGFFEKAIEL 227 (655)
Q Consensus 156 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-~-------~~~~li~~~~~~g~~~~A~~~ 227 (655)
++|.-.+.++++.. +++....---+.+|-+.|+...|..-|.++-+.+. + .--.++..|...++-+.|++.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999987 56666666678899999999999999988866332 1 122346667778888999998
Q ss_pred HHHHHHC-CCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCC--------------------------CCCC
Q 035659 228 YREMEME-NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK--------------------------NVNP 280 (655)
Q Consensus 228 ~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~--------------------------~~~p 280 (655)
++..... +-..+..+++.++..+.+...++ .|......+.... ++.+
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d------~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSD------KALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHH------HhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 8887763 23445667777777777777755 7777777766511 0122
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHH
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI--KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR----DVFVWSTM 354 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l 354 (655)
+... --+.-++.+....+....+.....+..+ .-++..|.-+.++|...|++.+|.++|..+... +...|-.+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 1223344566777777777777777764 446778899999999999999999999999753 67799999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcchh-------cCccCCcchHHHHH
Q 035659 355 IAGFAMYGCGREALDLFSRMQEAKVKPNA-VTFTNVLCACSHSGLVDEGRMFFNQMEPV-------YGVVPGVKHYTCMV 426 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~~~~p~~~~y~~li 426 (655)
..+|...|..++|++.|++... ..|+. ..-.+|...+.+.|+.++|.+.+..+..- .+..|+........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999998 45654 33445666688999999999999986421 13445555566677
Q ss_pred HHHHhcCCHHHHHHHH
Q 035659 427 DMLGRAGLLDEAVEFI 442 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~ 442 (655)
+.|...|+.++=+...
T Consensus 534 d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 534 DILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHhhhHHHHHHHH
Confidence 8888999888754433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-10 Score=118.08 Aligned_cols=281 Identities=12% Similarity=-0.007 Sum_probs=150.4
Q ss_pred cCCHHHHHHHHhhcCC--CCe-eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHHhccCccccCCC
Q 035659 187 CGDLAMAYCVFVMIGK--KDV-VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV--TMVAVLSACAKKRDLEFGRW 261 (655)
Q Consensus 187 ~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~~~~ 261 (655)
.|+++.|++.+.+..+ |+. ..+-.......+.|++++|.+.|.+..+.. |+.. ........+...|+++
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~---- 170 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH---- 170 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH----
Confidence 5666666666655543 221 222333445555666666666666665432 3322 2222345555566644
Q ss_pred hHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhh-------HHHHHHHHHhcCCHH
Q 035659 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYL-------TTSLIDMYTKCGNLD 334 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~~~g~~~ 334 (655)
+|...++.+.+.. +-+...+..+..++...|+++.+.+++..+.+.+....... +..+++.-......+
T Consensus 171 --~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 171 --AARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred --HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 6666666666543 33445566666667777777777777777776653322211 111111111222233
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCcHHHHHHHHHH
Q 035659 335 KALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF---TNVLCACSHSGLVDEGRMFFNQ 408 (655)
Q Consensus 335 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~ 408 (655)
...+.++..+. .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++.
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 44444554443 36667777777777777777777777777764 3333311 1111112334556666666666
Q ss_pred cchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHh---CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 035659 409 MEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK---MPIVPGASVWGALLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 409 ~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
..+...-.|+.....++...+.+.|++++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 554322222113444566666666666666666662 24456666666666666666666666666666544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=129.28 Aligned_cols=252 Identities=16% Similarity=0.134 Sum_probs=81.6
Q ss_pred HHHccCCchHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CeeHHHHHHHHHHhCCChhH
Q 035659 148 AAARLVQFRVGQAIHGMVIKSS-FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK---DVVSWNSMISGFVQGGFFEK 223 (655)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~ 223 (655)
.+.+.|+++.|.+++....... .+.|...|..+.......++.+.|...++++... +...+..++.. ...+++++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 3344445555555543322221 1223333444444444445555555555544432 22233444444 45555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 035659 224 AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ 303 (655)
Q Consensus 224 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 303 (655)
|.+++.+..+.. ++...+..++..+...++++ ++.+++++.......+.+...|..+...+.+.|+.++|.+
T Consensus 96 A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 96 ALKLAEKAYERD--GDPRYLLSALQLYYRLGDYD------EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------H-HHHTT-HH------HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccc--cccchhhHHHHHHHHHhHHH------HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 555554443321 33344444555555555543 5555555544333234555566666666677777777777
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 035659 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK 380 (655)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 380 (655)
.++++++.. +.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+.+|++..... +
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 777777654 3346666677777777777776655555443 2455666777777777777777777777776642 2
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 381 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
.|......+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 356666667777777777777777766654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-11 Score=121.24 Aligned_cols=278 Identities=12% Similarity=0.064 Sum_probs=196.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHhccCCH
Q 035659 220 FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP-DEFTFVSVLSACAQLGAM 298 (655)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p-~~~t~~~ll~~~~~~g~~ 298 (655)
+..+|+.+|...... +.-+......+..+|...++++ +|.++|+.+.+...... +..+|++.+--+-+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~------~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---- 402 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYD------QAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---- 402 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhccccccchhHHHHHHHHHHh----
Confidence 356677777664333 2333345556666777777755 77777777765432222 35566666644322
Q ss_pred HHHHHHH-HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 035659 299 DIGVQIH-AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRM 374 (655)
Q Consensus 299 ~~a~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (655)
+-+...+ +.+++.. +..+.+|.++.+.|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..
T Consensus 403 ~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred hHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 1122222 2223322 456788999999999999999999999888764 4567777777788888899999999887
Q ss_pred HHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 035659 375 QEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-G 450 (655)
Q Consensus 375 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 450 (655)
+. +.| +...|..+...|.+.++++.|+-.|+.+. .+.|. .....++...+-+.|+.|+|++++++. -..| |
T Consensus 482 l~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 482 LG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred hc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 65 333 23456667778899999999999999887 45664 556677778888999999999999986 2223 4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+..----+..+...+++++|+..++++.+.-|++...|..++.+|.+.|+.+.|..-|.-+.+.
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 4444445566677889999999999999999999999999999999999999998887776653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.8e-10 Score=112.86 Aligned_cols=427 Identities=13% Similarity=0.034 Sum_probs=272.3
Q ss_pred CCCChhhhhHHHHhhhcCCCCChHHHHHHhhc--CCCCCcchHHHHHHHHHhCCCcHHHHHHHH----HhhhcC------
Q 035659 66 LFFDPYSASKLFTPCALGTFSSLEYAREMFDQ--IPQPNLYTWNTLIRAYSSSAEPIQSFMIFL----QLVYNS------ 133 (655)
Q Consensus 66 ~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~~------ 133 (655)
+..|+...--+..+|.-.| +.+.|..+... +.+.|..+.......+.+..++++|+.++. .+..-.
T Consensus 45 l~~dp~d~~~~aq~l~~~~--~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 45 LTNDPADIYWLAQVLYLGR--QYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA 122 (611)
T ss_pred ccCChHHHHHHHHHHHhhh--HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence 3344444445666777677 88888777654 567888888888999999999999999987 220000
Q ss_pred --CCCCCcch----HHHHHHH-------HHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 035659 134 --PYFPNEFT----FPFVIKA-------AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMI 200 (655)
Q Consensus 134 --~~~pd~~t----~~~ll~~-------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 200 (655)
-+.+|..- -+.-.+. +....+.++|+..+.+++.. |+.-+.++..+-.. .+-.+.+.|+.+
T Consensus 123 ~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll 196 (611)
T KOG1173|consen 123 ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELL 196 (611)
T ss_pred hceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHH
Confidence 00111111 1111111 22223344444444444322 22222222221111 111121122222
Q ss_pred CCCCeeHH----HHHHHHHHhC----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHH
Q 035659 201 GKKDVVSW----NSMISGFVQG----GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272 (655)
Q Consensus 201 ~~~~~~~~----~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m 272 (655)
...|.... ...+..+.+. ..-++....-.+-.-.|..-+......-..-|...+++. +.++++...
T Consensus 197 ~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~------~c~kit~~l 270 (611)
T KOG1173|consen 197 ESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFK------ECLKITEEL 270 (611)
T ss_pred hcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHH------HHHHHhHHH
Confidence 21111110 0000000000 000000000000001122334444444445555566654 899999988
Q ss_pred HHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hh
Q 035659 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD---VF 349 (655)
Q Consensus 273 ~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~ 349 (655)
.+.. +++...+..-|..+...|+..+-..+=..+++. .|..+.+|-++.--|.-.|+.++|++.|.+...-| ..
T Consensus 271 le~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp 347 (611)
T KOG1173|consen 271 LEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP 347 (611)
T ss_pred HhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH
Confidence 8764 555556666677888888877777777777775 36678899999999999999999999999876544 46
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDM 428 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~ 428 (655)
.|-.....|+-.|..++|+..+...-+. ++-...-+.-+..-|.+.++.+.|.++|.+.. ++.| |+.+++-+.-+
T Consensus 348 aWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 348 AWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVV 423 (611)
T ss_pred HHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhhe
Confidence 8999999999999999999999877653 12222334444556888999999999999987 5566 46677777777
Q ss_pred HHhcCCHHHHHHHHHhC--------CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 035659 429 LGRAGLLDEAVEFIEKM--------PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 499 (655)
....+.+.+|..+|+.. +..+ -..+|+.|..+|++.+.+++|+..+++++.+.|.+..+|..++-+|...|
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG 503 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Confidence 77888999999999875 1111 34578899999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHh
Q 035659 500 KWDNVSELRKHMRV 513 (655)
Q Consensus 500 ~~~~a~~~~~~m~~ 513 (655)
+++.|.+.|.+..-
T Consensus 504 nld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 504 NLDKAIDHFHKALA 517 (611)
T ss_pred ChHHHHHHHHHHHh
Confidence 99999999987544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-10 Score=116.45 Aligned_cols=128 Identities=13% Similarity=-0.023 Sum_probs=70.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHH
Q 035659 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426 (655)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li 426 (655)
++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+. .+-|...+.++.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lg 335 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLG 335 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 3444445555555555555555555555542 233311 1222333446666666666666543 122344555666
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLEL 480 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 480 (655)
..+.+.|++++|.+.|++. ...|+...+..+...+...|+.++|..++++.+.+
T Consensus 336 rl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666666666666664 45566666666666666666666666666666554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-11 Score=122.55 Aligned_cols=244 Identities=14% Similarity=0.105 Sum_probs=195.7
Q ss_pred hHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCchhhHHHHHHHHHhcCCHHHHHHH
Q 035659 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG--IKLNCYLTTSLIDMYTKCGNLDKALEV 339 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (655)
.++|+.+|...... +.-+......+..+|...+++++++.+|+.+.+.. .--+..+|.+.+--+-+.=.+..--+-
T Consensus 335 ~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 335 CREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 45999999995543 34445677788899999999999999999998853 123566777776554433222222222
Q ss_pred HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC
Q 035659 340 FHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418 (655)
Q Consensus 340 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 418 (655)
+-.+....+.+|-++...|.-+++.+.|++.|++..+ +.| ...+|+.+-.-+.....+|.|...|+... ..|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCC
Confidence 2223344678999999999999999999999999998 566 67888888777888899999999999876 345
Q ss_pred cchHHH---HHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 419 VKHYTC---MVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 419 ~~~y~~---li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
+.+|++ |.-.|.+.++++.|+-.|++. .+.|. .++...+...+.+.|+.++|+++++++..++|.|+-.-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 556665 556799999999999999997 67775 5666777788999999999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHhC
Q 035659 494 IYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 494 ~~~~~g~~~~a~~~~~~m~~~ 514 (655)
++...+++++|.+.++++++-
T Consensus 566 il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh
Confidence 999999999999999999883
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-10 Score=111.74 Aligned_cols=401 Identities=14% Similarity=0.121 Sum_probs=263.6
Q ss_pred hHHHH---HHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHH-HHHHHHHccCCchHHHHHHHHHHHhCCCCC----hhH
Q 035659 105 TWNTL---IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP-FVIKAAARLVQFRVGQAIHGMVIKSSFEDD----LFI 176 (655)
Q Consensus 105 ~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~ 176 (655)
||+.| ..-|.-+....+|+..|+-. .+...-||.-.+. .+-+.+.+.+.+..|.+.++..+..-...+ +.+
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeii-vknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEII-VKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhh-hcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 45444 44566667788999999887 5555666655443 233456777888899999998877532222 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH--------HHH
Q 035659 177 SNSLIHFYAICGDLAMAYCVFVMIGK--KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM--------VAV 246 (655)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------~~l 246 (655)
.+.+.-.+.+.|.+++|..-|+...+ ||..+--.|+-.+.--|+-++..+.|.+|..-...||..-| ..|
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 55556678889999999999998755 77765445555556678899999999999865433332211 122
Q ss_pred HH---------HHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHH-------------HH--------HHHHHHhccC
Q 035659 247 LS---------ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT-------------FV--------SVLSACAQLG 296 (655)
Q Consensus 247 l~---------~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t-------------~~--------~ll~~~~~~g 296 (655)
+. -..+.++.+ .++++-.--++..-- +.||-.. +. .-..-+.+.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~----aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~ 433 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKAD----AEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNG 433 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhh----HHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhcc
Confidence 22 222222211 122222222222111 2232110 00 0112356778
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHH------------------------------------HhcCCHHHHHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY------------------------------------TKCGNLDKALEVF 340 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~------------------------------------~~~g~~~~A~~~~ 340 (655)
+++.|.+++.-+.+..-+.-....+.|-..+ ...|++++|.+.+
T Consensus 434 d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 434 DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 8888888888776644322222222221111 1347889999999
Q ss_pred hhcCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC
Q 035659 341 HTVKSRDVFVWSTMI---AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417 (655)
Q Consensus 341 ~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 417 (655)
++....|...-.+|. -.+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|++++.+... -+..
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~ 590 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPN 590 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCC
Confidence 888877765444433 3466789999999999888653 334677777888889999999999999988864 3455
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM-P-IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
|+.+.+-|.+.|-+.|+-..|.+..-.- . +.-+..+..-|..-|....-.+.++..|+++--+.|+...--..++.++
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 6889999999999999999998875443 2 2335666666777777788889999999999888886544444566777
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 035659 496 AKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~~ 514 (655)
.+.|++..|.++++.+.++
T Consensus 671 rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HhcccHHHHHHHHHHHHHh
Confidence 8899999999999988654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.2e-09 Score=100.73 Aligned_cols=354 Identities=13% Similarity=0.067 Sum_probs=218.3
Q ss_pred HccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCeeHHHHHHHHHHhCCChhHHHHH
Q 035659 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KDVVSWNSMISGFVQGGFFEKAIEL 227 (655)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 227 (655)
.+...+..|+.+++.++..- +.-...|--.+.|=-..|++..|+++|++-.+ |+..+|++.|..=.+-+..+.|..+
T Consensus 118 mknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~I 196 (677)
T KOG1915|consen 118 MKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSI 196 (677)
T ss_pred HhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34445555555555555442 22222344444444455566666666654432 5555666666655555556666666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 035659 228 YREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN-VNPDEFTFVSVLSACAQLGAMDIGVQIHA 306 (655)
Q Consensus 228 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 306 (655)
|++.+-. .|+..+|.--...-.+.|... -|..+|......-| -.-+...|.+...-=.++..++.|.-+|.
T Consensus 197 YerfV~~--HP~v~~wikyarFE~k~g~~~------~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyk 268 (677)
T KOG1915|consen 197 YERFVLV--HPKVSNWIKYARFEEKHGNVA------LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYK 268 (677)
T ss_pred HHHHhee--cccHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555442 355555555555555555544 44445544433210 01122234444433445667888888888
Q ss_pred HHHHcCCCCc--hhhHHHHHHHHHhcCCHHHHHHHH--------hhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHH
Q 035659 307 KMKKQGIKLN--CYLTTSLIDMYTKCGNLDKALEVF--------HTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSR 373 (655)
Q Consensus 307 ~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (655)
..++.= +.+ ...|..+...--+-|+......+. +.+.+. |-.+|--.+..-...|+.+...++|++
T Consensus 269 yAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yEr 347 (677)
T KOG1915|consen 269 YALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYER 347 (677)
T ss_pred HHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 887752 222 445555555555566654443332 222222 556777777777778899999999988
Q ss_pred HHHcCCCCCH-------HHHHHHHHH---HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHH----hcCCHHHHH
Q 035659 374 MQEAKVKPNA-------VTFTNVLCA---CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG----RAGLLDEAV 439 (655)
Q Consensus 374 m~~~g~~p~~-------~t~~~ll~a---~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~----~~g~~~~A~ 439 (655)
.+.. ++|-. ..|.-+=-+ -....+++.+.++|+...+ -++....++.-+--+|+ |+.++..|.
T Consensus 348 AIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~AR 424 (677)
T KOG1915|consen 348 AIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGAR 424 (677)
T ss_pred HHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHH
Confidence 8864 55521 112111112 2346788888888888774 23334556655555554 678888898
Q ss_pred HHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 440 EFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 440 ~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
+++... +.-|..-++...|..-.+.++++....++++.++-+|.|..++...+..-...|+++.|..+|....+...
T Consensus 425 kiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 425 KILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 888765 77788888888888888888999999999999999999888888888888888999999999988877654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-09 Score=113.54 Aligned_cols=467 Identities=12% Similarity=0.059 Sum_probs=274.9
Q ss_pred ccCCCCCCCcccHHHHHHHhcCcchH--HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchH
Q 035659 29 TVNNGHQHHPHPVFSLIKQCKNIKQL--KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTW 106 (655)
Q Consensus 29 ~~~~~~~~~~~~~~~ll~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~ 106 (655)
....|+.|+..||.+++..++..++. ..++..|.-..++....+++.++......+ +.+.|. +|...+|
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~An--d~Enpk-------ep~aDty 86 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEAN--DAENPK-------EPLADTY 86 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccc--cccCCC-------CCchhHH
Confidence 45568899999999999999988887 448888887777778888889988877777 666554 6777889
Q ss_pred HHHHHHHHhCCCcHHHHHHHHH-hh------hcCCCCCCcchHHHHHHHH--------------HccCCchHHHHHHHHH
Q 035659 107 NTLIRAYSSSAEPIQSFMIFLQ-LV------YNSPYFPNEFTFPFVIKAA--------------ARLVQFRVGQAIHGMV 165 (655)
Q Consensus 107 ~~li~~~~~~g~~~~A~~~~~~-m~------~~~~~~pd~~t~~~ll~~~--------------~~~~~~~~a~~~~~~~ 165 (655)
+.|+.+|.+.|+... ++..++ |. ...|+..-..-|...+.+| .-.|-++.+.+++..+
T Consensus 87 t~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999998654 222222 10 1122211111111111211 1112222222222222
Q ss_pred HHhCCCCChhHHHHHHHHHHh-cCCHHHHHHHHhhcCC-CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH
Q 035659 166 IKSSFEDDLFISNSLIHFYAI-CGDLAMAYCVFVMIGK-KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243 (655)
Q Consensus 166 ~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 243 (655)
...... .++.. .+.-... ...+++-...-....+ ++..+|.+++..-.-+|+.+.|..++.+|.+.|++.+.+-|
T Consensus 166 Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 166 PVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred Cccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 111100 00000 1111111 1223333333333334 78888999999999999999999999999999999888888
Q ss_pred HHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHH-----------HHHHHHH--
Q 035659 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQ-----------IHAKMKK-- 310 (655)
Q Consensus 244 ~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~-----------~~~~~~~-- 310 (655)
..|+-+ .++.. -+..+++.|+..| +.|+..|+..-+-.+.+.|....+.+ ++..+..
T Consensus 243 wpLl~g---~~~~q------~~e~vlrgmqe~g-v~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 243 WPLLLG---INAAQ------VFEFVLRGMQEKG-VQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred hhhhhc---Cccch------HHHHHHHHHHHhc-CCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence 877766 44433 6677777787777 99999988877766666443222111 1111110
Q ss_pred -----------------------cCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHH
Q 035659 311 -----------------------QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-------DVFVWSTMIAGFAM 360 (655)
Q Consensus 311 -----------------------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~ 360 (655)
.|+.....+|...+.. ...|.-+..+++-..+..+ ++..|..++.-|.+
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 1222222333322222 1246556666665555432 33344333333322
Q ss_pred c----------------------CChHHHHHHHHHHHHc----------------CCCC-------CHHHHHHHHHHHHc
Q 035659 361 Y----------------------GCGREALDLFSRMQEA----------------KVKP-------NAVTFTNVLCACSH 395 (655)
Q Consensus 361 ~----------------------g~~~~A~~~~~~m~~~----------------g~~p-------~~~t~~~ll~a~~~ 395 (655)
. ....+..++....+.. -+.| -...-+.++..|+.
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 1 1111112221111000 0000 01122344555555
Q ss_pred cCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCChhHHHHHHHHHHhcCCHHHH
Q 035659 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP-----IVPGASVWGALLGACKIHENVELA 470 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~g~~~~a 470 (655)
.-+..+++..-+..... - -+ ..|..||+.+....++++|..+.++.. +.-|..-+..+.+...+++....+
T Consensus 472 e~n~lK~l~~~ekye~~-l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYEDL-L-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHH-H-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 55555555443333221 1 12 578999999999999999999999883 233555677888889999999999
Q ss_pred HHHHHHHhccC---CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeE
Q 035659 471 EYACSHLLELE---PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524 (655)
Q Consensus 471 ~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 524 (655)
..+++.+.+.- |.......-+.+.-+..|+.+...++++-+...|+.. .+.-|
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 99998887732 4344566778888899999999999999999998866 34444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-09 Score=104.73 Aligned_cols=328 Identities=13% Similarity=0.076 Sum_probs=223.7
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH--HHHH
Q 035659 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM--VAVL 247 (655)
Q Consensus 170 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll 247 (655)
...|.+.+-...-.+-+.|....|...|......-+..|.+.+.-..-.-+.+.+..+.. |...|..-+ -.+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHH
Confidence 355555544445556677788888888877666544445444433322222222222111 111111111 1123
Q ss_pred HHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCchhhHHHHHH
Q 035659 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGI--KLNCYLTTSLID 325 (655)
Q Consensus 248 ~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~ 325 (655)
.++......+ +++.-.......| ++-+...-+-...+.....++++|+.+|+++.+... --|..+|+.++-
T Consensus 235 ~a~~el~q~~------e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 235 KAYQELHQHE------EALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHH------HHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 3444444433 7777677776665 554444444444455677899999999999988741 125667776653
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHH
Q 035659 326 MYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN-AVTFTNVLCACSHSGLVDEGRM 404 (655)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 404 (655)
.-..+.++.---...-.+.+--+.|...+.+-|+-.++.++|...|++..+. .|. ...|+.+..-|....+...|.+
T Consensus 308 v~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 308 VKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHH
Confidence 3222222222112222233334567777788888899999999999999884 444 4566667778999999999999
Q ss_pred HHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 405 ~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
-++.+++. .+.|-..|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.+++..+.
T Consensus 386 sYRrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99998852 2346788999999999999999999999997 5666 578999999999999999999999999999987
Q ss_pred CCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 483 ENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 483 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.+..+|..|+++|.+.++.++|...+++-.+
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7889999999999999999999999987665
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.9e-08 Score=98.84 Aligned_cols=441 Identities=10% Similarity=0.026 Sum_probs=335.3
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhh
Q 035659 55 KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVY 131 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 131 (655)
+++....++. ++.++.+|-..+. .. ..++|+.++.+..+ .....|. +|++..-++.|..+++..
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAVe----lE--~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNka-- 432 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAVE----LE--EPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKA-- 432 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHh----cc--ChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHH--
Confidence 5555555443 3456777777765 33 67789999988764 2334444 566667788999999988
Q ss_pred cCCCCCCcchHHHHHHHHHccCCchHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----
Q 035659 132 NSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMV----IKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK----- 202 (655)
Q Consensus 132 ~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----- 202 (655)
+..++-+...|.+....=-..|+.+....+...- ...|+..+..-|-.=...+-+.|..-.+..+...+..
T Consensus 433 Re~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe 512 (913)
T KOG0495|consen 433 REIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE 512 (913)
T ss_pred HhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc
Confidence 4457778888888777777888998888887654 4568888888888777888888888887777765542
Q ss_pred -CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC
Q 035659 203 -KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281 (655)
Q Consensus 203 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~ 281 (655)
.-..+|+.-...|.+.+.++-|..+|...++. .+-+...|......--.-|..+ +-..+|++.... ++-.
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~E------sl~Allqkav~~--~pka 583 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRE------SLEALLQKAVEQ--CPKA 583 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHH------HHHHHHHHHHHh--CCcc
Confidence 23468999999999999999999999988764 2334556666665555567655 778888888765 4555
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--RDVFVWSTMIAGFA 359 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 359 (655)
...|.....-.-..|++..|+.++..+.+.. +.+..+|-+-+........++.|+.+|.+... +....|.--+...-
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER 662 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH
Confidence 6666666677778899999999999999875 44788999999999999999999999998865 45667777777777
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHH
Q 035659 360 MYGCGREALDLFSRMQEAKVKPNA-VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438 (655)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 438 (655)
-.+..++|++++++..+. -|+. ..|..+...+.+.++++.|...|..-.+ ...-.+-.|-.|.+.=-+.|.+-.|
T Consensus 663 ~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhH
Confidence 789999999999998884 5664 5666777789999999999999887664 2333466788888888899999999
Q ss_pred HHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------------------------------cc
Q 035659 439 VEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN------------------------------HG 486 (655)
Q Consensus 439 ~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------------------------------~~ 486 (655)
..++++. .-..|...|-..+..-.++|+.+.|..+..++++--|.+ +.
T Consensus 739 R~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph 818 (913)
T KOG0495|consen 739 RSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH 818 (913)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch
Confidence 9999987 333467899999999999999999999999998855543 44
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeE
Q 035659 487 ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524 (655)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 524 (655)
....++..+....+++.|.+-|.+....+ ++-|-.|
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~w 854 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAW 854 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHH
Confidence 55566777777888888888887776644 3344444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-09 Score=102.23 Aligned_cols=358 Identities=12% Similarity=0.104 Sum_probs=257.2
Q ss_pred CCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHH-HHHHHH
Q 035659 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSW-NSMISG 214 (655)
Q Consensus 136 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~li~~ 214 (655)
.-|.+-+-......-+.|....|...+...+..- +..|.+-+....-..+.+.+..+....+..+...- --+..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 3455444444455667778888888887776542 23444444444444555665555544444322111 124455
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHh
Q 035659 215 FVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP-DEFTFVSVLSACA 293 (655)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p-~~~t~~~ll~~~~ 293 (655)
+-...+.++++.-.+.....|+..+...-+....+.-...+++ +|+.+|+++.+...... |..+|+.++-+-.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD------~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFD------QAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHH------HHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 6666688888888888888887766655555555555667755 99999999998754433 5678888875543
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDL 370 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 370 (655)
....+. .+.+-+-.=-+-.+.|...+.+-|+-.++.++|...|++..+- -...|+.|..-|....+...|++-
T Consensus 311 ~~skLs----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 311 DKSKLS----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhHHHH----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 322221 1111111101234567888888999999999999999998764 457899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC--CC
Q 035659 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM--PI 447 (655)
Q Consensus 371 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~ 447 (655)
++..++-. +-|...|-.|..+|.-.+...=|+-+|++..+ ++| |...|.+|.+.|.+.+++++|++.|.+. .-
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99999852 34888999999999999999999999999874 455 5889999999999999999999999987 22
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------CCCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 448 VPGASVWGALLGACKIHENVELAEYACSHLLEL-------EPENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 448 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
..+...+..|...+.+.++.++|.+.+++-++. +|....+..-|+.-+.+.+++++|...-...
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 235588999999999999999999999998873 3433445556888889999999998765443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-09 Score=113.76 Aligned_cols=284 Identities=11% Similarity=0.011 Sum_probs=149.2
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCCcchH-HHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 035659 116 SAEPIQSFMIFLQLVYNSPYFPNEFTF-PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194 (655)
Q Consensus 116 ~g~~~~A~~~~~~m~~~~~~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 194 (655)
.|+++.|.+.+... ... .|+...+ -....+..+.|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 97 ~g~~~~A~~~l~~~-~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 97 EGDYAKAEKLIAKN-ADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCCHHHHHHHHHHH-hhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 46666666666554 222 2332222 2223344455666666666666554431222223333455555566666666
Q ss_pred HHHhhcCC--C-CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHH
Q 035659 195 CVFVMIGK--K-DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271 (655)
Q Consensus 195 ~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~ 271 (655)
..++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++.++......-..++
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~--------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE--------------------- 232 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------
Confidence 66555543 2 33445555555666666666666655555554321111101000000
Q ss_pred HHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC--
Q 035659 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG---IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-- 346 (655)
Q Consensus 272 m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 346 (655)
..+ ...+..+.+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.
T Consensus 233 --------------~~~----l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p 294 (409)
T TIGR00540 233 --------------IGL----LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG 294 (409)
T ss_pred --------------HHH----HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Confidence 000 11111122222333333221 1135666666667777777777777777666542
Q ss_pred ChhH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcc
Q 035659 347 DVFV---WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA---VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420 (655)
Q Consensus 347 ~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 420 (655)
|... ...........++.+.+++.+++..+. .|+. ....++...|.+.|++++|.++|+..... ...|+..
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~ 371 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDAN 371 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHH
Confidence 2211 111112223345667777777777663 4443 34456777788888888888888853322 4578887
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHh
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~ 444 (655)
.+..+...+.+.|+.++|.+++++
T Consensus 372 ~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 372 DLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788888888888888888888876
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-10 Score=118.38 Aligned_cols=249 Identities=12% Similarity=0.079 Sum_probs=134.5
Q ss_pred HHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 035659 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD 204 (655)
Q Consensus 125 ~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 204 (655)
++-.| +..|+.|+..||..+|.-|+..|+++.|- +|..|.-..++....+++.++......++.+.+. +|-
T Consensus 12 fla~~-e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALH-EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHH-HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 44555 77788888888888888888888888777 8888777777777778888888877777776665 667
Q ss_pred eeHHHHHHHHHHhCCChhHHHHHHHH-HH-------HCCCCCCHhhHHHH--------------HHHHhccCccccCCCh
Q 035659 205 VVSWNSMISGFVQGGFFEKAIELYRE-ME-------MENVKPDEVTMVAV--------------LSACAKKRDLEFGRWP 262 (655)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~l--------------l~~~~~~~~~~~~~~~ 262 (655)
..+|+.|..+|.+.|+..- ++..++ |. ..|+..-..-+-.. +......|.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa----- 156 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA----- 156 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH-----
Confidence 7788888888888887654 222222 21 11211111111111 11111111111
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhh
Q 035659 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342 (655)
Q Consensus 263 ~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 342 (655)
.+++++..+.......|-.+ ++.-+... ..-.+++.+......-.++..++.++++.-.-.|+++.|..++.+
T Consensus 157 -qllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 157 -QLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred -HHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 33333333322111111111 12222221 122233333332211136666666666666666666666666666
Q ss_pred cCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 035659 343 VKSRD----VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398 (655)
Q Consensus 343 ~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 398 (655)
|++.. ..-|-.++-+ .+....+..+++-|.+.|+.|+..|+.-.+..|...|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66542 2222233333 55556666666666666666666666665555555433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.3e-12 Score=87.09 Aligned_cols=50 Identities=38% Similarity=0.743 Sum_probs=48.5
Q ss_pred CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 035659 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252 (655)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (655)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.3e-10 Score=106.32 Aligned_cols=198 Identities=15% Similarity=0.074 Sum_probs=161.8
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 391 (655)
.....+..+...|.+.|++++|.+.|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456777888889999999999999987653 346678888888999999999999999988753 235566777788
Q ss_pred HHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHH
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVEL 469 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 469 (655)
.+...|++++|.+.++.+............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998764222223456777888999999999999999886 3334 45678888899999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 470 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
|...++++++..|.++..+..++..+...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888888899999999999999998887755
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-09 Score=98.15 Aligned_cols=305 Identities=14% Similarity=0.157 Sum_probs=171.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHhccC
Q 035659 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE--FTFVSVLSACAQLG 296 (655)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~--~t~~~ll~~~~~~g 296 (655)
.+.++|+++|-+|.+.. +-+..+..+|.+.|.+.|..+ .|+.+-+.+..+.+.+-+. ...-.+..-|...|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvD------RAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVD------RAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHH------HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 45555555555555421 122333444555555555544 5555555554332111111 12233444456667
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH--------HHHHHHHHHHcCChHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFV--------WSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~ 368 (655)
-+|.|+++|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+-+... |--+...+....+.+.|.
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 7777777777776644 2333455566777777777777777766555433222 333334444556777777
Q ss_pred HHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 035659 369 DLFSRMQEAKVKPNAVT-FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-P 446 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~ 446 (655)
.++++..+.+ |+.+- -..+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ .
T Consensus 201 ~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 201 ELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777643 33222 223444566777788888777777654 22222556667777778888888877777665 4
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH--hcCCchhHHHHHHHHHhCCCccCCceeE
Q 035659 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA--KTGKWDNVSELRKHMRVSGLKKEPGCSS 524 (655)
Q Consensus 447 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 524 (655)
..++...-..+-..-....-.+.|...+.+-+...|.-...|..+-.-.. ..|++.+-...++.|....++..|.+..
T Consensus 278 ~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 278 TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 44455555555555455555666777766666777744333333322222 3466888888888888777766665444
Q ss_pred EEECCEEEEE
Q 035659 525 IEVNGEIHKF 534 (655)
Q Consensus 525 ~~~~~~~~~f 534 (655)
..-+-..|.|
T Consensus 358 ~~CGF~a~~l 367 (389)
T COG2956 358 QNCGFTAHTL 367 (389)
T ss_pred cccCCcceee
Confidence 3333334444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-08 Score=95.97 Aligned_cols=278 Identities=15% Similarity=0.057 Sum_probs=145.3
Q ss_pred cCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChH
Q 035659 187 CGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPN 263 (655)
Q Consensus 187 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 263 (655)
.|++..|++...+-.+ .-+..|-.-+.+--+.|+.+.+-..+.+.-+.--.++...+.+........|+..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~------ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP------ 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch------
Confidence 4666666666655433 1223344444455556666666666666655433344444555555555566554
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch-------hhHHHHHHHHHhcCCHHHH
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC-------YLTTSLIDMYTKCGNLDKA 336 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A 336 (655)
.|..-..++...+ +-+.........+|.+.|++.....+...+.+.|.-.+. .+|+.+++-....+..+.-
T Consensus 171 aA~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 171 AARENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred hHHHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 5666666655543 334455566666666666666666666666666643332 2344444444444444444
Q ss_pred HHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhc
Q 035659 337 LEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413 (655)
Q Consensus 337 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 413 (655)
...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+- ..+-.+.+-++.+.-++..+.-.+..
T Consensus 249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 445555542 24555555556666666666666666666655554441 11123444444444444444443332
Q ss_pred CccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 035659 414 GVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 414 ~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
+..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+...|+.+..++.+.|+.++|.++.++.+
T Consensus 325 ~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 325 PEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3333 34445555555555555555555543 444555555555555555555555555555444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-08 Score=94.64 Aligned_cols=278 Identities=14% Similarity=0.103 Sum_probs=166.0
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCC---ChhHHHHHH
Q 035659 105 TWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED---DLFISNSLI 181 (655)
Q Consensus 105 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li 181 (655)
.|-.=++.+. +.++++|.++|-+| .+. -+-+..+--+|-+.+.+.|..+.|..+|+-+.++.--+ -......|.
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~-l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEM-LQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHH-Hhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3444444444 46788999999999 331 11223334466677888899999999999888753111 123444566
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCC---eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCcccc
Q 035659 182 HFYAICGDLAMAYCVFVMIGKKD---VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEF 258 (655)
Q Consensus 182 ~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 258 (655)
.-|.+.|-+|.|+.+|..+.+.. ..+...|+..|-+..++++|+++-+++...|-.+..+ -
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----e------------ 178 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----E------------ 178 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----H------------
Confidence 77888888888888888776622 3355667778888888888887777666554332211 0
Q ss_pred CCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 035659 259 GRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALE 338 (655)
Q Consensus 259 ~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 338 (655)
. ...|.-+...+....+++.|..++.+..+.+ +..+..--.+.+.+...|+++.|.+
T Consensus 179 ------I----------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~ 235 (389)
T COG2956 179 ------I----------------AQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVE 235 (389)
T ss_pred ------H----------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHH
Confidence 0 1123333344444556677777777776654 3344455556677777777777777
Q ss_pred HHhhcCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcC
Q 035659 339 VFHTVKSRDV----FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414 (655)
Q Consensus 339 ~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 414 (655)
.++.+.+.|. .+...|..+|.+.|+.++....+.++.+....++ .-..+...-....-.+.|..++.+-...
T Consensus 236 ~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 236 ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 7777766554 2455566677777777777777777766432222 2223333223333444554444443322
Q ss_pred ccCCcchHHHHHHHH
Q 035659 415 VVPGVKHYTCMVDML 429 (655)
Q Consensus 415 ~~p~~~~y~~li~~~ 429 (655)
+|+...+..+++.-
T Consensus 312 -~Pt~~gf~rl~~~~ 325 (389)
T COG2956 312 -KPTMRGFHRLMDYH 325 (389)
T ss_pred -CCcHHHHHHHHHhh
Confidence 56666666666543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-09 Score=109.33 Aligned_cols=243 Identities=17% Similarity=0.181 Sum_probs=173.1
Q ss_pred HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHC-----CCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHc--
Q 035659 240 EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS-----KNVNPDEFTF-VSVLSACAQLGAMDIGVQIHAKMKKQ-- 311 (655)
Q Consensus 240 ~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~-----~~~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-- 311 (655)
..|...+...|...|+++ +|..+++...+. |...|...+. +.+...|...+++++|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e------~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLE------KAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred HHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 457777999999999977 999999887654 1124444433 33666778888888888888887652
Q ss_pred ---C--CCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-H
Q 035659 312 ---G--IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV-T 385 (655)
Q Consensus 312 ---g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 385 (655)
| .+.-..+++.|..+|.+.|++++|...++ .|++++++.... ..|... -
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e------------------------~Al~I~~~~~~~-~~~~v~~~ 327 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCE------------------------RALEIYEKLLGA-SHPEVAAQ 327 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHH------------------------HHHHHHHHhhcc-ChHHHHHH
Confidence 2 11224456666677888888888777654 556666652111 223332 3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcC--ccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-------CC--CCC
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYG--VVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM-------PI--VPG 450 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~--~p~ 450 (655)
++.+...|+..+.+++|..+++...+.+. ..++ ..+|+.|...|...|++++|++++++. .. .+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 45566678888999999988887766543 2222 457899999999999999999999876 11 222
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CC---CCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 451 -ASVWGALLGACKIHENVELAEYACSHLLEL----EP---ENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 451 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
...++.|...|.+.+++++|.++|.+.... +| +...+|..|+.+|...|++++|.++.+....
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 456677888999999999999999887663 34 4456888999999999999999999887753
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-11 Score=83.63 Aligned_cols=50 Identities=30% Similarity=0.544 Sum_probs=46.8
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035659 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395 (655)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 395 (655)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-07 Score=89.71 Aligned_cols=439 Identities=13% Similarity=0.085 Sum_probs=266.0
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCC----CCCcchHHHHHHHHHhCCCcHHHHHHHHHhh
Q 035659 55 KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP----QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 130 (655)
+.+++..+.-. ..+..+|-..+.+=.++. ++..|+.+|++.. +.|. .|---+-.=-..|+...|.++|++.+
T Consensus 93 RSv~ERALdvd-~r~itLWlkYae~Emknk--~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 93 RSVFERALDVD-YRNITLWLKYAEFEMKNK--QVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHhcc-cccchHHHHHHHHHHhhh--hHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44555544432 234556666666666666 6777777776542 2121 12222222222355555566665541
Q ss_pred hcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------
Q 035659 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-------- 202 (655)
Q Consensus 131 ~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-------- 202 (655)
. ..|+...|.+.++.=.+-..++.|+.+++..+-. .|++..|--....=-++|.+..|+.+|+...+
T Consensus 169 -~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 169 -E--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred -c--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 1 3455556666555555555555566555555433 35555555555555555555555555544332
Q ss_pred ----------------------------------CCeeHHHHHHHHHHhCCChhHHHHH--------HHHHHHCCCCCCH
Q 035659 203 ----------------------------------KDVVSWNSMISGFVQGGFFEKAIEL--------YREMEMENVKPDE 240 (655)
Q Consensus 203 ----------------------------------~~~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~g~~p~~ 240 (655)
+....|..+...=-+-|+.....+. |+.++.. -+-|-
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nY 322 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCc
Confidence 1112222222222233332222211 1222222 13455
Q ss_pred hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH-------HHHHHHHHH---hccCCHHHHHHHHHHHHH
Q 035659 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF-------TFVSVLSAC---AQLGAMDIGVQIHAKMKK 310 (655)
Q Consensus 241 ~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~-------t~~~ll~~~---~~~g~~~~a~~~~~~~~~ 310 (655)
.+|--.++.-...|+.+ ...++|++.... ++|-.. .|.-+=-+| ....+.+.+.++++..++
T Consensus 323 DsWfdylrL~e~~g~~~------~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKD------RIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred hHHHHHHHHHHhcCCHH------HHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66767777777777755 888999998764 677321 222221122 356799999999999998
Q ss_pred cCCCCchhhHHHHHHHHH----hcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 035659 311 QGIKLNCYLTTSLIDMYT----KCGNLDKALEVFHTVKS--RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384 (655)
Q Consensus 311 ~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 384 (655)
. ++...+|+..+=-+|+ ++.++..|++++-.... |-.-++...|..=.+.+.++.+..++++.++.+ +-|..
T Consensus 395 l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~ 472 (677)
T KOG1915|consen 395 L-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCY 472 (677)
T ss_pred h-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhH
Confidence 4 5556777776666665 67899999999987653 566778888888889999999999999999964 23677
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHH-
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACK- 462 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~- 462 (655)
+|......-...|+.+.|..+|..+.+...+..-...|-+.|+-=...|.++.|..+++++ ...+...+|-++..--.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s 552 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEAS 552 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcc
Confidence 8877777777889999999999999876444444556777777778899999999999987 33445667877664433
Q ss_pred ----hcC-----------CHHHHHHHHHHHhcc----CCCCc--chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 463 ----IHE-----------NVELAEYACSHLLEL----EPENH--GALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 463 ----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
+.+ +...|..+|+++... +|... ...-...+.-...|...+...+-..|.+
T Consensus 553 ~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 553 ASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 333 567888899888763 23221 1222233334455666666666555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-08 Score=96.63 Aligned_cols=278 Identities=11% Similarity=0.084 Sum_probs=208.6
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCC
Q 035659 218 GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA 297 (655)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~ 297 (655)
.|++.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+ .+-.++.+..+.- -.++.....+........|+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~------~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDED------RANRYLAEAAELA-GDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHH------HHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCC
Confidence 799999999999877776444 344666667777788866 8888888887642 23445556666677888999
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hHHHHHHHHHHHcCChHH
Q 035659 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV-----------FVWSTMIAGFAMYGCGRE 366 (655)
Q Consensus 298 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~ 366 (655)
...|..-...+.+.+ +-.+.+.....++|.+.|++.....++..+.+... .+|+.++.-....+..+.
T Consensus 169 ~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 169 YPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred chhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999999999998876 56678888999999999999999999999886432 467777766666555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHH----HHHH
Q 035659 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA----VEFI 442 (655)
Q Consensus 367 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A----~~~~ 442 (655)
-...++..-.. .+-+...-.+++.-+...|+.++|.++..+..++ +..|+ ...++ ...+-++.+.- .+.+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHH
Confidence 55566655433 4555666667778888999999999999888876 55555 11111 22344444433 3333
Q ss_pred HhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 443 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
...|. ++..+.+|...|.+++.+.+|...|+.+++..| +...|..++.++.+.|+..+|.+++++-..
T Consensus 322 ~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 322 KQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44454 447889999999999999999999999999998 568999999999999999999999987663
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.4e-07 Score=90.92 Aligned_cols=425 Identities=15% Similarity=0.186 Sum_probs=222.1
Q ss_pred HHhhhcCCCCChHHHHHHhhcCCC-----CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHc
Q 035659 77 FTPCALGTFSSLEYAREMFDQIPQ-----PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR 151 (655)
Q Consensus 77 l~~y~~~g~~~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 151 (655)
+....+.| ++..-++.|++... .....|...|.-..+.+-++-++.++++. .+ .++..-.--|..+++
T Consensus 109 lq~l~~Q~--~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY-Lk----~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 109 LQFLIKQG--LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY-LK----VAPEAREEYIEYLAK 181 (835)
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH-Hh----cCHHHHHHHHHHHHh
Confidence 33444455 66666666665321 22334666666666666676777777666 22 233335555566666
Q ss_pred cCCchHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCHH---HHHHHHhhcCCC--C--eeHHHHHHHHHHhC
Q 035659 152 LVQFRVGQAIHGMVIKSS------FEDDLFISNSLIHFYAICGDLA---MAYCVFVMIGKK--D--VVSWNSMISGFVQG 218 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li~~~~~~ 218 (655)
.+++++|.+.+..++... .+.+...|.-+-+..++.-+.- ....+++.+..+ | ...|++|.+.|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 677777666666554221 1333344444444444432211 122233333321 2 23688888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCc-----------cccCCC--------------------------
Q 035659 219 GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD-----------LEFGRW-------------------------- 261 (655)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----------~~~~~~-------------------------- 261 (655)
|.+++|.++|++.... ..+..-|+.+.++|+.-.. -..+.+
T Consensus 262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 8888888888876654 2233334444444432110 000000
Q ss_pred -----------------------hHHHHHHHHHHHHCCCCCCC------HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 035659 262 -----------------------PNEALSIFHELQLSKNVNPD------EFTFVSVLSACAQLGAMDIGVQIHAKMKKQG 312 (655)
Q Consensus 262 -----------------------~~~A~~l~~~m~~~~~~~p~------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 312 (655)
+.+-...|.+..+. +.|- ...|..+.+.|-..|+++.|+.+|++..+..
T Consensus 340 VlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 33444444444433 2332 2246666667777788888888888877755
Q ss_pred CCCc---hhhHHHHHHHHHhcCCHHHHHHHHhhcCC---C------------------ChhHHHHHHHHHHHcCChHHHH
Q 035659 313 IKLN---CYLTTSLIDMYTKCGNLDKALEVFHTVKS---R------------------DVFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 313 ~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~------------------~~~~~~~li~~~~~~g~~~~A~ 368 (655)
++-- ..+|..-.++=.+..+++.|.++.+.... + +...|...+..--..|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 4322 44566666666677777777777765431 0 2234555555544555555555
Q ss_pred HHHHHHHHcCCC----------------------------------CCH-HHHHHHHHHH---HccCcHHHHHHHHHHcc
Q 035659 369 DLFSRMQEAKVK----------------------------------PNA-VTFTNVLCAC---SHSGLVDEGRMFFNQME 410 (655)
Q Consensus 369 ~~~~~m~~~g~~----------------------------------p~~-~t~~~ll~a~---~~~g~~~~a~~~~~~~~ 410 (655)
.+|+++.+..+. |+. ..|+..+.-+ .....++.|..+|++..
T Consensus 498 ~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL 577 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL 577 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 566655544322 222 1122222211 11235666666666666
Q ss_pred hhcCccCCcc--hHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 411 PVYGVVPGVK--HYTCMVDMLGRAGLLDEAVEFIEKM--PIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 411 ~~~~~~p~~~--~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
+ +..|... .|-.....=-+-|....|..++++. .+++. ...|+..|.-....=-+..-..+++++++.-|++
T Consensus 578 ~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~ 655 (835)
T KOG2047|consen 578 D--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS 655 (835)
T ss_pred h--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH
Confidence 4 4444311 1111111222346666666666665 22222 2456655544333323444566777777766654
Q ss_pred cc--hHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 485 HG--ALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 485 ~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.. ...-.+.+-.+.|..+.|..++.--.+-
T Consensus 656 ~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 656 KAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 33 2233466677889999999988765443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-08 Score=110.15 Aligned_cols=243 Identities=13% Similarity=0.010 Sum_probs=177.3
Q ss_pred hHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHh---------ccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 035659 262 PNEALSIFHELQLSKNVNPD-EFTFVSVLSACA---------QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~---------~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 331 (655)
.++|+.+|++..+. .|+ ...|..+..++. ..+++++|...++++++.+ +.+...+..+..++...|
T Consensus 277 ~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 277 LQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 34999999999874 455 445555544433 2345899999999999875 557788888999999999
Q ss_pred CHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHH
Q 035659 332 NLDKALEVFHTVKS--R-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV-TFTNVLCACSHSGLVDEGRMFFN 407 (655)
Q Consensus 332 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 407 (655)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999764 3 4567888999999999999999999999985 45432 23334445667899999999999
Q ss_pred HcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 408 QMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGA-SVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 408 ~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
++.+. ..|+ +..+..+...|...|++++|.+.++++ +..|+. ..++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88653 2343 445777888899999999999999987 444553 34455555666666 57888888877754222
Q ss_pred cchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 485 HGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
+.....+...|+-.|+-+.+... +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22233366777778888877766 7776654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-07 Score=95.72 Aligned_cols=423 Identities=15% Similarity=0.069 Sum_probs=269.2
Q ss_pred CCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcc-h
Q 035659 66 LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEF-T 141 (655)
Q Consensus 66 ~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~-t 141 (655)
+.-|+.+|..|.-+..++| ++..+.+.|++... .....|+.+-..|.-.|....|+.+++.-+.... .|+.. .
T Consensus 319 ~qnd~ai~d~Lt~al~~~g--~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~-~ps~~s~ 395 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCG--QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE-QPSDISV 395 (799)
T ss_pred hcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-CCCcchH
Confidence 4568999999999999999 99999999998653 3445699999999999999999999987623222 34333 3
Q ss_pred HHHHHHHHH-ccCCchHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHhc-----------CCHHHHHHHHhhcCCC--
Q 035659 142 FPFVIKAAA-RLVQFRVGQAIHGMVIKS--SF--EDDLFISNSLIHFYAIC-----------GDLAMAYCVFVMIGKK-- 203 (655)
Q Consensus 142 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~f~~~~~~-- 203 (655)
+-..-+.|. +.+..+++...-.+++.. +. ......|-.+.-+|... ....++.+.+++..+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333334454 456777777777777662 21 11223344444444322 1133566666666442
Q ss_pred -CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCH
Q 035659 204 -DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE 282 (655)
Q Consensus 204 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~ 282 (655)
|..+---+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++. +|+.+.+....+- .-|-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~------~Al~vvd~al~E~--~~N~ 547 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK------EALDVVDAALEEF--GDNH 547 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH------HHHHHHHHHHHHh--hhhh
Confidence 333323334456677889999999888888876777888888888888888866 8888887776542 2222
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC---C--CChh-HHHHHHH
Q 035659 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK---S--RDVF-VWSTMIA 356 (655)
Q Consensus 283 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~--~~~~-~~~~li~ 356 (655)
.....-+..-...++.+++......+... |...- .....|+-....+....+. + .+.. ++.-+..
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 22222233333456666666665555441 00000 0001112223333333332 1 1222 2222222
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHH
Q 035659 357 GFAMYGCGREALDLFSRMQEAKVKPNA--------VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVD 427 (655)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~ 427 (655)
... -+...+..-.. |...-+.|+. ..|......+.+.+..++|...+.+..+ +.| ....|.....
T Consensus 619 -l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 619 -LVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGL 692 (799)
T ss_pred -HHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhH
Confidence 221 11111110000 2222222322 2344555668888999999988888764 334 3556777778
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHHHhccCCCCcchHHHHHHHHHhcCCchh
Q 035659 428 MLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEY--ACSHLLELEPENHGALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 503 (655)
.+...|.+++|.+.|... .+.|+ +.+..++...+.+.|+...|.. ++..+++.+|.++.+|..|+.++-+.|+.+.
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 888999999999988775 56676 6788999999999999888888 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 035659 504 VSELRKHMRVS 514 (655)
Q Consensus 504 a~~~~~~m~~~ 514 (655)
|.+.|+...+.
T Consensus 773 Aaecf~aa~qL 783 (799)
T KOG4162|consen 773 AAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHhh
Confidence 99999987654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-08 Score=94.75 Aligned_cols=200 Identities=15% Similarity=0.134 Sum_probs=162.8
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 035659 280 PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIA 356 (655)
Q Consensus 280 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 356 (655)
.....+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 345677788888999999999999999998864 45677888899999999999999999998764 35667888899
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCH
Q 035659 357 GFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435 (655)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 435 (655)
.+...|++++|.+.|++.......| ....+..+...+...|++++|...+....+. ...+...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCH
Confidence 9999999999999999998753222 3456666777889999999999999998753 222456788899999999999
Q ss_pred HHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 436 DEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 436 ~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
++|.+.+++. .. ..+...+..+...+...|+.+.|....+.+.+..|
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999886 22 33456777788888899999999999888776543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-08 Score=102.24 Aligned_cols=239 Identities=18% Similarity=0.179 Sum_probs=147.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC----------CCee-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhh
Q 035659 174 LFISNSLIHFYAICGDLAMAYCVFVMIGK----------KDVV-SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVT 242 (655)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 242 (655)
..+...|..+|...|+++.|..+++...+ +.+. ..+.+...|...+++++|..+|++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~------------ 266 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE------------ 266 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH------------
Confidence 44555688888888888888888866543 1221 223455667777777777777663
Q ss_pred HHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----CC-CC
Q 035659 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-----GI-KL 315 (655)
Q Consensus 243 ~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~-~~ 315 (655)
|+.+++..... ..|. ..+++.|..+|.+.|++++|...++.+.+. |. .+
T Consensus 267 ----------------------AL~i~e~~~G~--~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 267 ----------------------ALTIREEVFGE--DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred ----------------------HHHHHHHhcCC--CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 44444444322 3343 457778888899999999998888877652 10 11
Q ss_pred c-hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCC----HHHHH
Q 035659 316 N-CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA---KVKPN----AVTFT 387 (655)
Q Consensus 316 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~ 387 (655)
. ...++.+...++..+++++|. .++++..+. -+.++ ..+++
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~-------------------------------~l~q~al~i~~~~~g~~~~~~a~~~~ 371 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAK-------------------------------KLLQKALKIYLDAPGEDNVNLAKIYA 371 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHH-------------------------------HHHHHHHHHHHhhccccchHHHHHHH
Confidence 1 112233333444444444444 444433221 11222 24566
Q ss_pred HHHHHHHccCcHHHHHHHHHHcchhc-----CccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-hh
Q 035659 388 NVLCACSHSGLVDEGRMFFNQMEPVY-----GVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM--------PIVPG-AS 452 (655)
Q Consensus 388 ~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~ 452 (655)
.+...+.+.|++++|.++|+++.... +..+. ..+++.|...|.+.++..+|.++|.+. +..|+ ..
T Consensus 372 nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~ 451 (508)
T KOG1840|consen 372 NLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTY 451 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHH
Confidence 77777777777777777777765432 11111 345666777777777777777777653 23455 36
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
+|..|...|...|+++.|+++.+.+..
T Consensus 452 ~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 452 TYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 889999999999999999999988874
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.6e-09 Score=96.63 Aligned_cols=225 Identities=14% Similarity=0.073 Sum_probs=191.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcC
Q 035659 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--R-DVFVWSTMIAGFAMYG 362 (655)
Q Consensus 286 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 362 (655)
+-+...|.++|-+.+|+..++...+.. |-+.||-.|-..|.+..+.+.|..+|.+-.+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 567788899999999999999888864 6667888899999999999999999998765 3 5555566777888899
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHH
Q 035659 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442 (655)
Q Consensus 363 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~ 442 (655)
+.++|.++|+...+.. ..+......+...|.-.++.+-|+.+|..+.+. |+ .+++.|+.+.-.|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999998852 335566667777888899999999999999875 65 46778999988888999999999888
Q ss_pred HhC---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 443 EKM---PIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 443 ~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
++. -..|+ ..+|..+.......|++..|.+.|+-++..+|++..+++.|+-.-.+.|++++|..+++..++..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 875 12344 56899999999999999999999999999999999999999999999999999999999887753
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-06 Score=86.31 Aligned_cols=210 Identities=10% Similarity=0.024 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 343 (655)
.|..-|+...... -. +...|--+..+|....+.++..+.|+...+.+ +-++.+|..-..++.-.+++++|..=|++.
T Consensus 344 ~a~~d~~~~I~l~-~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 344 GAQEDFDAAIKLD-PA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhHHHHHhcC-cc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888887754 22 22237777788999999999999999999976 557778888888888899999999999988
Q ss_pred CCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC--
Q 035659 344 KSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-- 418 (655)
Q Consensus 344 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-- 418 (655)
.+- ++..|-.+.-+..+.+++++++..|++.+.. .+--+..|+.....+...++++.|.+.|+..++ +.|+
T Consensus 421 i~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~ 496 (606)
T KOG0547|consen 421 ISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREH 496 (606)
T ss_pred hhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccc
Confidence 754 5566777777777888999999999999886 444567888888899999999999999999874 3444
Q ss_pred -------cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 035659 419 -------VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELE 481 (655)
Q Consensus 419 -------~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 481 (655)
+.+--.++- +.-.+++..|+.++.+. .+.|. ...+-+|...-.+.|+.++|+++|++...+-
T Consensus 497 ~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111111221 22348999999999987 55554 5688899999999999999999999988764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.6e-07 Score=85.51 Aligned_cols=267 Identities=11% Similarity=0.076 Sum_probs=181.0
Q ss_pred CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCC
Q 035659 203 KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV----TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNV 278 (655)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~ 278 (655)
.|+.....+...+...|+.++|+..|++.... .|+.. .|..| +.+.|+.+ +...+...+... .
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e------~~~~L~~~Lf~~--~ 296 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCE------QDSALMDYLFAK--V 296 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH---HHhccCHh------hHHHHHHHHHhh--h
Confidence 35666777777777777777777777776543 22221 12222 23344433 444444444321 1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHH
Q 035659 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMI 355 (655)
Q Consensus 279 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 355 (655)
.-+...|..-+......++++.|..+-++.++.+ +.+...+-.-...+...|+.++|.-.|+.... -+..+|.-|+
T Consensus 297 ~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~ 375 (564)
T KOG1174|consen 297 KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLF 375 (564)
T ss_pred hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 1223333333444456677788888777777754 33444555555667778899998888887543 3778999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-ccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhc
Q 035659 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL-CACS-HSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRA 432 (655)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~ 432 (655)
..|...|+..||.-+-+..... +.-+..+.+.+. ..|. ....-++|..+++... .+.|+ ....+.+...+.+.
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVE 451 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhh
Confidence 9999999999988877665543 334556655442 2332 2334588999998876 45776 34556677888899
Q ss_pred CCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 433 GLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 433 g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
|+.++++.++++. ...||....+.|...++..+.+++|...|..++.++|++..+
T Consensus 452 g~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred CccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 9999999999885 667899999999999999999999999999999999987543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5e-08 Score=96.82 Aligned_cols=211 Identities=12% Similarity=0.010 Sum_probs=133.9
Q ss_pred CCHHHHHHHHHHHHHcC-CCC--chhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 035659 296 GAMDIGVQIHAKMKKQG-IKL--NCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALD 369 (655)
Q Consensus 296 g~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 369 (655)
+..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666666432 122 234577777778888888888888877653 356778888888888888888888
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 035659 370 LFSRMQEAKVKPN-AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM--P 446 (655)
Q Consensus 370 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~ 446 (655)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888877 3454 456666777777888888888888887643 454322222222344567788888888553 2
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHh-------ccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 447 IVPGASVWGALLGACKIHENVELAEYACSHLL-------ELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 447 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
..|+...| .......|+..++ ..++.+. ++.|....+|..++..|.+.|++++|...|++..+..
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22332222 1222234444333 2333333 3445566788888888888888888888888877644
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-07 Score=91.57 Aligned_cols=219 Identities=13% Similarity=-0.016 Sum_probs=158.7
Q ss_pred hHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 035659 262 PNEALSIFHELQLSKNVNPD--EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (655)
.+.++.-+.++.......|+ ...|..+...+...|+.++|...|.+.++.. +.+...|+.+...|...|++++|...
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45788888888765433443 3457777788999999999999999999875 45688999999999999999999999
Q ss_pred HhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCcc
Q 035659 340 FHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416 (655)
Q Consensus 340 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 416 (655)
|+...+ .+...|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... ...
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~ 196 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLD 196 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCC
Confidence 999864 35678888999999999999999999999884 45543222222234556789999999977553 233
Q ss_pred CCcchHHHHHHHHHhcCCHHHH--HHHHHh-CCC----CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 417 PGVKHYTCMVDMLGRAGLLDEA--VEFIEK-MPI----VP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 417 p~~~~y~~li~~~~~~g~~~~A--~~~~~~-m~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
|+... ..++. ...|++.++ .+.+.+ ... .| ....|..+...+...|++++|+..|+++++.+|++..-+
T Consensus 197 ~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 197 KEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred ccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 43322 23333 335555443 322222 111 11 235899999999999999999999999999997654433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-07 Score=103.43 Aligned_cols=178 Identities=11% Similarity=0.021 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChh
Q 035659 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC---------GDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFE 222 (655)
Q Consensus 155 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 222 (655)
+++|.+.++++++.. +.+...+..+..+|... +++++|...+++..+ .+..+|..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 456667777766653 22344454444443321 234555555555443 23444555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHhccCCHHHH
Q 035659 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE-FTFVSVLSACAQLGAMDIG 301 (655)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~~~~~~g~~~~a 301 (655)
+|+..|++..+.+ +.+...+..+...+...|+.+ +|+..+++..+.. |+. ..+..++.++...|++++|
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~------eAi~~~~~Al~l~---P~~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLE------EALQTINECLKLD---PTRAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH------HHHHHHHHHHhcC---CCChhhHHHHHHHHHhccCHHHH
Confidence 5555555555442 112334444444455555533 5555555554422 221 1112222233334445555
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 035659 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343 (655)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 343 (655)
...+.++.+...+.++..+..+..+|...|+.++|...++++
T Consensus 426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 555444443321122333344444444445544444444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.1e-07 Score=89.59 Aligned_cols=274 Identities=12% Similarity=0.071 Sum_probs=140.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 035659 210 SMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVL 289 (655)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll 289 (655)
.-..-+...+++.+..++++...+.. ++....+..-|..+...|+-. +-..+=.++... .+-...+|-++.
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n------~Lf~lsh~LV~~--yP~~a~sW~aVg 319 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSN------KLFLLSHKLVDL--YPSKALSWFAVG 319 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccc------hHHHHHHHHHHh--CCCCCcchhhHH
Confidence 33344444555555555555554432 222222333333444444432 333333344332 233344555555
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHHcCChHH
Q 035659 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR--D-VFVWSTMIAGFAMYGCGRE 366 (655)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~ 366 (655)
--|...|+..+|++.+.+....+ +.-...|-.+...|+-.|.-|.|...+....+- . -.-+--+..-|.+.+..+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 55555555666666655554432 122335555555566555555555554443221 0 0011112233555566666
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhc-Ccc----CCcchHHHHHHHHHhcCCHHHHHH
Q 035659 367 ALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY-GVV----PGVKHYTCMVDMLGRAGLLDEAVE 440 (655)
Q Consensus 367 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~----p~~~~y~~li~~~~~~g~~~~A~~ 440 (655)
|.+.|.+... +.| |+...+-+.-...+.+.+.+|..+|+.....- .+. ....+++.|..+|.+++++++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 6666666555 333 34444444444445566666666666554210 000 123346667777777777777777
Q ss_pred HHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 441 FIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 441 ~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
.+++. -.+.|..++.++.-.+...|+++.|...|.+++-+.|+|..+-..|..+.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 77764 22335667777777777777777777777777777777755444444433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-08 Score=91.52 Aligned_cols=229 Identities=10% Similarity=0.057 Sum_probs=193.8
Q ss_pred HHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHH
Q 035659 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL 323 (655)
Q Consensus 244 ~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 323 (655)
+.+.+.|.+.|... +|.+.|+..... .|-..||..+-.+|.+..+++.|..++.+-++. ++-++....-.
T Consensus 227 ~Q~gkCylrLgm~r------~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ 296 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPR------RAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQ 296 (478)
T ss_pred HHHHHHHHHhcChh------hhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhh
Confidence 56778888999966 999999988874 466779999999999999999999999998876 46666667778
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH
Q 035659 324 IDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400 (655)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 400 (655)
...+-..++.++|.++++...+ .++.+...+..+|.-.++.+-|+.+|+++.+.|+. +...|+.+.-+|...+.+|
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 8888999999999999998865 36677777788899999999999999999999876 7788888888999999999
Q ss_pred HHHHHHHHcchhcCccCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPG--VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSH 476 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 476 (655)
-++--|+..... .-.|+ ..+|..+.......|++.-|.+.|+-. ...| +...++.|.-.-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 999999988764 33454 467888888888999999999999876 2223 467899999999999999999999999
Q ss_pred HhccCCCC
Q 035659 477 LLELEPEN 484 (655)
Q Consensus 477 ~~~~~p~~ 484 (655)
+....|.-
T Consensus 455 A~s~~P~m 462 (478)
T KOG1129|consen 455 AKSVMPDM 462 (478)
T ss_pred hhhhCccc
Confidence 99988854
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.8e-06 Score=83.50 Aligned_cols=406 Identities=11% Similarity=0.051 Sum_probs=231.2
Q ss_pred HHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHH--Hc
Q 035659 77 FTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA--AR 151 (655)
Q Consensus 77 l~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~--~~ 151 (655)
++.+.+.| ++++|.+.-.++.. .+...+..=+-++.+.+++++|+.+.+.- .+...+..-+ +=++| .+
T Consensus 19 ln~~~~~~--e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~~~~~~~~~--fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNG--EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GALLVINSFF--FEKAYCEYR 91 (652)
T ss_pred HHHhccch--HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---chhhhcchhh--HHHHHHHHH
Confidence 45666777 88888887777653 24444555666788888888888655432 1111111111 23343 46
Q ss_pred cCCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHH
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDD-LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 230 (655)
.+..++|...+. |..++ ..+.-.-...+.+.|++++|..+|+.+.+.+...+...+.+-+-.- ..+... +.
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~-~~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQV-QL 163 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhH-HH
Confidence 778888877766 33333 3355555667778888999999988887655555444433221110 001111 12
Q ss_pred HHHCCCCCCHhhHHHHHH---HHhccCccccCCChHHHHHHHHHHHHC-------CCCC-----CCHH-HHHHHHHHHhc
Q 035659 231 MEMENVKPDEVTMVAVLS---ACAKKRDLEFGRWPNEALSIFHELQLS-------KNVN-----PDEF-TFVSVLSACAQ 294 (655)
Q Consensus 231 m~~~g~~p~~~t~~~ll~---~~~~~~~~~~~~~~~~A~~l~~~m~~~-------~~~~-----p~~~-t~~~ll~~~~~ 294 (655)
|......| ..||..+.+ .+...|++. +|+++++..... +... -+.. .-.-+.-++-.
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~------qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYN------QAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHH------HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 33333334 345555544 344567765 999999888221 1011 1111 12233445678
Q ss_pred cCCHHHHHHHHHHHHHcCCCCch----hhHHHHHHHHHhc----------------------------------------
Q 035659 295 LGAMDIGVQIHAKMKKQGIKLNC----YLTTSLIDMYTKC---------------------------------------- 330 (655)
Q Consensus 295 ~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~---------------------------------------- 330 (655)
.|+.++|.+++..+++... +|. ...|.|+.+-...
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998763 332 2233333221111
Q ss_pred -----CCHHHHHHHHhhcCCC-ChhHHHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 035659 331 -----GNLDKALEVFHTVKSR-DVFVWSTMIAGFA--MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402 (655)
Q Consensus 331 -----g~~~~A~~~~~~~~~~-~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 402 (655)
+..+.++++-...+.. ....+.+++.... +.....++.+++...-+....-..+.....+......|+++.|
T Consensus 316 L~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 1111111111111111 1223333433322 2224666777777666542221234444555567889999999
Q ss_pred HHHHH--------HcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-hhHHHHHHHHHHhcC
Q 035659 403 RMFFN--------QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM--------PIVPG-ASVWGALLGACKIHE 465 (655)
Q Consensus 403 ~~~~~--------~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g 465 (655)
.+++. .+.+. +.. +.+...++..|.+.++-+.|.+++.+. ...+. ..+|.-+..--.++|
T Consensus 396 ~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99999 55432 333 446677888888888766666665543 22222 234444444456789
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
+-++|..+++++.+.+|++..+...+..+|++. +.+.|..+-+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 999999999999999999999999999999876 4566655533
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-06 Score=88.50 Aligned_cols=287 Identities=13% Similarity=0.065 Sum_probs=165.4
Q ss_pred HHHhCCCcHHHHHHHHHhhhcCCCCCCcch-HHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---
Q 035659 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFT-FPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAIC--- 187 (655)
Q Consensus 112 ~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--- 187 (655)
.+...|++++|++.+..- . ...+|..+ +......+.+.|+.++|..++..+++.+ +.+..-|..|..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~-~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKN-E--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHCCCHHHHHHHHHhh-h--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 345566777777766543 1 12334333 3344455666677777777777777665 33333444444444221
Q ss_pred --CCHHHHHHHHhhcCC--CCeeHHHHHHHHHHhCCChh-HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCCh
Q 035659 188 --GDLAMAYCVFVMIGK--KDVVSWNSMISGFVQGGFFE-KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWP 262 (655)
Q Consensus 188 --g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~ 262 (655)
.+.+....+++++.. |...+.--+.-.+.....+. .+...+..+...|+++ +|+.|-..|....+..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~----- 160 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA----- 160 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH-----
Confidence 235555666665543 21111111211122212232 2334555666666543 3444444444333322
Q ss_pred HHHHHHHHHHHH----CCC---------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 035659 263 NEALSIFHELQL----SKN---------VNPDEF--TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327 (655)
Q Consensus 263 ~~A~~l~~~m~~----~~~---------~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 327 (655)
-..+++..... .+. -+|... ++.-+...+...|+.++|.+..+..+++. +..+..|..-...|
T Consensus 161 -~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Karil 238 (517)
T PF12569_consen 161 -IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARIL 238 (517)
T ss_pred -HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 22233333321 111 134442 44555666788999999999999998864 33377888888889
Q ss_pred HhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHcc
Q 035659 328 TKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT--------FTNVLCACSHS 396 (655)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~ll~a~~~~ 396 (655)
-+.|++++|.+.++....- |-..-+-.+..+.+.|+.++|.+++......+..|-... ......+|.+.
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887764 455666677788889999999999888877654332211 13345678888
Q ss_pred CcHHHHHHHHHHcchh
Q 035659 397 GLVDEGRMFFNQMEPV 412 (655)
Q Consensus 397 g~~~~a~~~~~~~~~~ 412 (655)
|++..|++.|..+.+.
T Consensus 319 ~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKH 334 (517)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8888888777766544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-06 Score=89.21 Aligned_cols=286 Identities=15% Similarity=0.124 Sum_probs=183.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CCee-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc-cCcc
Q 035659 181 IHFYAICGDLAMAYCVFVMIGK--KDVV-SWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK-KRDL 256 (655)
Q Consensus 181 i~~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~ 256 (655)
...+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+++.+ |+...|...+..+.. ....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3455677888888888876544 3433 44566777788888888888888888764 666666655555541 1111
Q ss_pred ccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 035659 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA-MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335 (655)
Q Consensus 257 ~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (655)
... ..+...++|+++...- |.......+.-.+..... -..+...+..+.+.|+|+ +++.|-..|....+.+-
T Consensus 89 ~~~-~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 89 SDE-DVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccc-cHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 000 0336677777776532 433333222211222112 234555666667777644 66667677765555555
Q ss_pred HHHHHhhcC------------------CCCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 035659 336 ALEVFHTVK------------------SRDV--FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN-AVTFTNVLCACS 394 (655)
Q Consensus 336 A~~~~~~~~------------------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 394 (655)
..+++.... .|.. .++.-+...|-..|++++|++++++.++. .|+ ...|..-...+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 555554432 1122 24455677788999999999999999984 566 556777777899
Q ss_pred ccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCC---CCC--C----hhHH--HHHHHHHHh
Q 035659 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP---IVP--G----ASVW--GALLGACKI 463 (655)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~---~~p--~----~~~~--~~ll~~~~~ 463 (655)
+.|++++|.+.++...+. -.-|...-+-.+..+.|+|++++|.+++.... ..| | ...| .....+|.+
T Consensus 240 h~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HCCCHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998752 22355566667778889999999999887762 111 1 1234 334577889
Q ss_pred cCCHHHHHHHHHHHhc
Q 035659 464 HENVELAEYACSHLLE 479 (655)
Q Consensus 464 ~g~~~~a~~~~~~~~~ 479 (655)
.|++..|++-|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9999999988887776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.5e-06 Score=83.98 Aligned_cols=192 Identities=15% Similarity=0.239 Sum_probs=139.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 035659 289 LSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 289 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 368 (655)
+.+......+.+|..+++.+.+.. ....-|..+.+-|+..|+++-|+++|-+.. .++-.|..|.+.|+|++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 344556677888888888877654 233457778889999999999999997643 4666788999999999998
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 035659 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 448 (655)
++-.+.. |.......|..-..-.-+.|++.+|.++|-.+. .|+ .-|.+|-+.|..++.+++.++--
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h-- 877 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHH-- 877 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhC--
Confidence 8876553 233444556555556778899999988876553 354 45788999999999999888862
Q ss_pred CC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 449 PG--ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 449 p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
|+ ..|...+..-+-..|+...|+..|-++ .-|..-.++|...+.|++|.++-+
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 33 345666777788888888888777654 335566777888888888777654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-05 Score=81.02 Aligned_cols=361 Identities=11% Similarity=0.076 Sum_probs=206.0
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHh
Q 035659 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQ 217 (655)
Q Consensus 141 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 217 (655)
.|..+.-......+.++|.+.+..+++.+ +.|..++.-|.-.-+..|+++.....-....+ .....|..+..++.-
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL 155 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 33333333333444555555555555544 34444454444444445555444443333322 355678888888888
Q ss_pred CCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHH------HhccCccccCCChHHHHHHHHHHHHCCCCCCCHHH-HHHHH
Q 035659 218 GGFFEKAIELYREMEMEN-VKPDEVTMVAVLSA------CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT-FVSVL 289 (655)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~------~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t-~~~ll 289 (655)
.|+...|..++++..+.. -.|+...|...... ..+.|.. ++|++-+..-... ..|... -..-.
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~------q~ale~L~~~e~~---i~Dkla~~e~ka 226 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL------QKALEHLLDNEKQ---IVDKLAFEETKA 226 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH------HHHHHHHHhhhhH---HHHHHHHhhhHH
Confidence 999999999998887764 35666665544332 2334443 3777666554332 223332 33445
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH-HHHhhcCCC---ChhHHHHHHHHHHHcCChH
Q 035659 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL-EVFHTVKSR---DVFVWSTMIAGFAMYGCGR 365 (655)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 365 (655)
..+.+.+++++|..++..++..+ +-+...|-.+..++.+..+.-++. .+|....+. ....-..=++......-.+
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHH
Confidence 56789999999999999999875 333444445555555443433443 555554431 0000000001111112233
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH---H-HHHHHHHcchhcC----------ccCCcc--hHHHHHHHH
Q 035659 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD---E-GRMFFNQMEPVYG----------VVPGVK--HYTCMVDML 429 (655)
Q Consensus 366 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~---~-a~~~~~~~~~~~~----------~~p~~~--~y~~li~~~ 429 (655)
..-+++..+.+.|+++--..+.++- -.-...+ + +..+...+... | -.|... ++-.++..|
T Consensus 306 ~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred HHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcccc-cCCCcccccccCCchHHHHHHHHHHHHH
Confidence 4455667777777765433333332 2111111 1 12222222111 1 133433 345667788
Q ss_pred HhcCCHHHHHHHHHhC-CCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 430 GRAGLLDEAVEFIEKM-PIVPGAS-VWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
-+.|+++.|+.+++.. +..|+.+ .|..=...+...|++++|...++++.+++-.|...-.--++-..++.+.++|.++
T Consensus 382 D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred HHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHH
Confidence 8999999999999886 5566643 4444456788889999999999999999966654444556666788999999999
Q ss_pred HHHHHhCCC
Q 035659 508 RKHMRVSGL 516 (655)
Q Consensus 508 ~~~m~~~g~ 516 (655)
.....+.|.
T Consensus 462 ~skFTr~~~ 470 (700)
T KOG1156|consen 462 LSKFTREGF 470 (700)
T ss_pred HHHhhhccc
Confidence 888877664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.2e-06 Score=78.91 Aligned_cols=403 Identities=12% Similarity=0.109 Sum_probs=222.3
Q ss_pred ChHHHHHHhhcCCC------CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHH
Q 035659 87 SLEYAREMFDQIPQ------PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQA 160 (655)
Q Consensus 87 ~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~ 160 (655)
++.-|+.+++--.. .++..| +..++-+-|++++|+..|...+. . -.|+...+..|.-...-.|...+|++
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~-~-~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMN-K-DDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhc-c-CCCCcccchhHHHHHHHHHHHHHHHH
Confidence 67888877764331 122333 33456677889999988888733 2 34555555555555556677777777
Q ss_pred HHHHHHHhCCCCChhHHH-HHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 035659 161 IHGMVIKSSFEDDLFISN-SLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD 239 (655)
Q Consensus 161 ~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 239 (655)
+-... |+....+ .|...-.|.|+-++-..+-+.+... ...--+|.+.....-.+++|+++|.+.+.. .|+
T Consensus 113 ~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 113 IAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred HHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 65443 3333333 3445555666655555444444331 112223444444445678888888888765 244
Q ss_pred HhhHHHHHHHH-hccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcc--CCHHHH--HH----------H
Q 035659 240 EVTMVAVLSAC-AKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL--GAMDIG--VQ----------I 304 (655)
Q Consensus 240 ~~t~~~ll~~~-~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~--g~~~~a--~~----------~ 304 (655)
-...|.-+..| .+..-++ -+.++++--.+. ++-+....+..+....+. |+..+. .+ .
T Consensus 184 y~alNVy~ALCyyKlDYyd------vsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYD------VSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred hhhhHHHHHHHHHhcchhh------hHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 44444444433 3444433 555555554443 222333333333222222 111111 11 1
Q ss_pred HHHHHHcCC------C------C-----chhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC----
Q 035659 305 HAKMKKQGI------K------L-----NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC---- 363 (655)
Q Consensus 305 ~~~~~~~g~------~------~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~---- 363 (655)
.+.+.++++ + | -+..--.|+-.|.+.+++.+|..+.+.+....+.-|-.-.-.++..|+
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCc
Confidence 112222211 0 0 012223455567888999999998888765544433322222333332
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHH
Q 035659 364 ---GREALDLFSRMQEAKVKPNAVT-FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439 (655)
Q Consensus 364 ---~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 439 (655)
..-|.+.|+-.-+++..-|.+. --++.+++.-...+|+.+-+++.+.. |=...|... -.+..+++..|.+.+|+
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn-~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFN-LNLAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhh-hHHHHHHHHhcChHHHH
Confidence 3345555555544544433322 12344555666788899988888865 233333333 35778899999999999
Q ss_pred HHHHhCC--CCCChhHHHHHH-HHHHhcCCHHHHHHHHHHHhccC-CCC-cchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 440 EFIEKMP--IVPGASVWGALL-GACKIHENVELAEYACSHLLELE-PEN-HGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 440 ~~~~~m~--~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
++|-++. .-.|..+|.+++ .+|.+.+.++.|- +.+++.+ |.+ ......+++-|.+++.+=-|.+.|+.+...
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW---~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW---DMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH---HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 9997762 113566776655 5566777777764 4455555 322 234456788888999988888888888765
Q ss_pred C
Q 035659 515 G 515 (655)
Q Consensus 515 g 515 (655)
.
T Consensus 491 D 491 (557)
T KOG3785|consen 491 D 491 (557)
T ss_pred C
Confidence 4
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.1e-07 Score=81.62 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=130.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHH
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDM 428 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~ 428 (655)
...+.-+|.+.|+...|..-+++.++. .| +..++..+...|.+.|..+.|.+.|+...+ +.|+ ..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 445667788888888888888888874 44 456777777888888999999888888874 4554 5677888888
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH
Q 035659 429 LGRAGLLDEAVEFIEKMPIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 504 (655)
+|..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++.+|+++.+...+.....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 8888999999998888622232 457888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 035659 505 SELRKHMRVSGL 516 (655)
Q Consensus 505 ~~~~~~m~~~g~ 516 (655)
...++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999988877654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-05 Score=74.23 Aligned_cols=380 Identities=12% Similarity=0.047 Sum_probs=236.6
Q ss_pred hhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCc
Q 035659 79 PCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF 155 (655)
Q Consensus 79 ~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~ 155 (655)
.|-+.| ++++|..++..+.+ ++...|-.|.-.+---|.+.+|..+-... .-++.....++...-+.++-
T Consensus 66 C~fhLg--dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 66 CYFHLG--DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHhhc--cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcH
Confidence 345567 99999999987653 55566766766666678888888876655 12344455666677788888
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCeeHHHH-HHHHHHhCCChhHHHHHHHHHH
Q 035659 156 RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KDVVSWNS-MISGFVQGGFFEKAIELYREME 232 (655)
Q Consensus 156 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~ 232 (655)
++-..+++.+... ..-.-+|..+....-.+.+|.+++.++.. |+....|. |.-.|.+...++-+.+++.--+
T Consensus 138 k~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 138 KRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 8888888776543 23334555555555678999999998875 45555554 3446677777777777776665
Q ss_pred HCCCCCCH-hhHHHHHHHHhc--cCccccC---------C------------------ChHHHHHHHHHHHHCCCCCCCH
Q 035659 233 MENVKPDE-VTMVAVLSACAK--KRDLEFG---------R------------------WPNEALSIFHELQLSKNVNPDE 282 (655)
Q Consensus 233 ~~g~~p~~-~t~~~ll~~~~~--~~~~~~~---------~------------------~~~~A~~l~~~m~~~~~~~p~~ 282 (655)
+. -||. ...|.......+ .|+.... . ..+.|++++-.+.. +.|.
T Consensus 213 ~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~---~IPE- 286 (557)
T KOG3785|consen 213 RQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK---HIPE- 286 (557)
T ss_pred Hh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh---hChH-
Confidence 54 2332 222222221111 1111100 0 02233333333222 1221
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHH-----HHhcCCHHHHHHHHhhcCCC-----ChhHHH
Q 035659 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM-----YTKCGNLDKALEVFHTVKSR-----DVFVWS 352 (655)
Q Consensus 283 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 352 (655)
.-..++--|.+.+++.+|..+...+.- ..|.......++.+ ......+.-|.+.|+..-+. .+.--.
T Consensus 287 -ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 287 -ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred -hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 122333446788888888877655421 22333333322221 12223356677777766542 233455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHH-HHHHHHHh
Q 035659 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT-CMVDMLGR 431 (655)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-~li~~~~~ 431 (655)
+|.+.+.-..++++++-+++....--..-|...| .+..+.+..|.+.+|+++|-.+... .+ .|..+|. .|...|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHh
Confidence 6677777778899999988888775333333433 5778999999999999999988642 22 3445554 55678999
Q ss_pred cCCHHHHHHHHHhCCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 432 AGLLDEAVEFIEKMPIVPGASVWGA-LLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 432 ~g~~~~A~~~~~~m~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
++..+-|++++-++.-..+..+.-. +..-|.+.+.+=-|-+.|+.+..++|.
T Consensus 441 nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred cCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 9999999999999864444444444 446689999999999999999999973
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-05 Score=77.27 Aligned_cols=243 Identities=11% Similarity=0.029 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcCCHHHHHHHHhh
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY-LTTSLIDMYTKCGNLDKALEVFHT 342 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 342 (655)
.|...+--+.....++-|......+.+.+...|+.++|...|+...-.+ |+.. ......-.+.+.|+.+....+...
T Consensus 214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~ 291 (564)
T KOG1174|consen 214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDY 291 (564)
T ss_pred hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHH
Confidence 4444444333333366778888888899999999999999998887643 3221 112222234566777777666665
Q ss_pred cCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-
Q 035659 343 VKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP- 417 (655)
Q Consensus 343 ~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p- 417 (655)
+... ....|-.-........++..|+.+-++.++. .| +...|..-...+...|+.++|.-.|.... .+.|
T Consensus 292 Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq---~Lap~ 366 (564)
T KOG1174|consen 292 LFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQ---MLAPY 366 (564)
T ss_pred HHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHH---hcchh
Confidence 5433 3445655556666778888888888888774 33 33444444456778899999999998886 4454
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHH-HHHH-hcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM--PIVPGASVWGALL-GACK-IHENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
+...|..|+..|...|++.||..+-+.. .+..+..+...+. ..|. .-.--|+|.+++++.++++|.-..+-+.++.
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAE 446 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 5788999999999999999987665442 1123444443332 2222 2233578889999999999988888888899
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 035659 494 IYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 494 ~~~~~g~~~~a~~~~~~m~~ 513 (655)
.+...|+.+++..+++....
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHhhCccchHHHHHHHHHh
Confidence 99999999999888876543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=95.57 Aligned_cols=219 Identities=14% Similarity=0.078 Sum_probs=176.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 035659 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 368 (655)
+.+.|++.+|.-.|+..++.+ +-+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467788999999999998876 56788999999999999999999999988765 36677888888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHH
Q 035659 369 DLFSRMQEAKVK--------PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440 (655)
Q Consensus 369 ~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 440 (655)
..|++-+....+ ++..+-.. ........+....++|-.+....+..+|+.++.+|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988653211 01000000 11222334455566666666555666888899999999999999999999
Q ss_pred HHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 441 FIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 441 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.|+.. .++|+ ...||-|...++...+.++|+..|.+++++.|.-..+.+.|+..|...|.++||.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99986 66775 689999999999999999999999999999999999999999999999999999998876544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-05 Score=81.72 Aligned_cols=339 Identities=18% Similarity=0.184 Sum_probs=187.5
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-hH
Q 035659 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV-TM 243 (655)
Q Consensus 168 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 243 (655)
..+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+...|.-.|.-..|+.++++-....-.|+.. .+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567888888888888899999999888887654 345678888888888888888888887765544334333 33
Q ss_pred HHHHHHHhc-cCccccCCChHHHHHHHHHHHHC-----CCCCCCHHHHHHHHHHHhcc-----------CCHHHHHHHHH
Q 035659 244 VAVLSACAK-KRDLEFGRWPNEALSIFHELQLS-----KNVNPDEFTFVSVLSACAQL-----------GAMDIGVQIHA 306 (655)
Q Consensus 244 ~~ll~~~~~-~~~~~~~~~~~~A~~l~~~m~~~-----~~~~p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~ 306 (655)
-..-..|.. .+..+ +++++-.+.... +.+.|- .|..+.-+|... ....++.+.++
T Consensus 397 Lmasklc~e~l~~~e------egldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 397 LMASKLCIERLKLVE------EGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred HHHHHHHHhchhhhh------hHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 333334433 34433 333333333221 102222 122222222111 01234555555
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCC-
Q 035659 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK----SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA-KVK- 380 (655)
Q Consensus 307 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~- 380 (655)
+.++.+. .|+.+.--+.--|+..++++.|.+...+.. ..+...|.-+.-.+.-.+++.+|+.+.+..... |..
T Consensus 469 ~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~ 547 (799)
T KOG4162|consen 469 EAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH 547 (799)
T ss_pred HHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 5555431 122222222223444555555555544432 234555555555555555555555555544332 100
Q ss_pred -----------------CCHHHHHHHHHHHHc---------cC--------------cHHHH-------HHHHH----Hc
Q 035659 381 -----------------PNAVTFTNVLCACSH---------SG--------------LVDEG-------RMFFN----QM 409 (655)
Q Consensus 381 -----------------p~~~t~~~ll~a~~~---------~g--------------~~~~a-------~~~~~----~~ 409 (655)
--..|...++..+-. .| +..++ ..+.. .+
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 000111111111110 00 00000 00000 00
Q ss_pred -----chhcCccCCc--------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHH
Q 035659 410 -----EPVYGVVPGV--------KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYAC 474 (655)
Q Consensus 410 -----~~~~~~~p~~--------~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 474 (655)
.....+.|+. ..|....+.+.+.+..++|...+.+. .+.| ...+|......+...|+.++|.+.|
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 0111222332 23556667788888889988777665 3333 3567777777788999999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCchhHHH--HHHHHHhCC
Q 035659 475 SHLLELEPENHGALVLLSNIYAKTGKWDNVSE--LRKHMRVSG 515 (655)
Q Consensus 475 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~g 515 (655)
..++.++|+++.....++.++.+.|+-.-|.. ++..+.+.+
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 99999999999999999999999998877777 777776643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00013 Score=75.12 Aligned_cols=354 Identities=11% Similarity=0.158 Sum_probs=183.7
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 035659 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183 (655)
Q Consensus 104 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 183 (655)
..|-.-+..+.++|+.......|++.+..-.+.-....|...+......+-++.+..+++..++.. +..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 467777778888888888888888875555555566678888887777787888888888777653 3336677778
Q ss_pred HHhcCCHHHHHHHHhhcCCCC----------eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc
Q 035659 184 YAICGDLAMAYCVFVMIGKKD----------VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK 253 (655)
Q Consensus 184 ~~~~g~~~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 253 (655)
+++.+++++|-+.+..+...+ ...|+.+-...+++-+.-.-+.+ +.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-da----------------------- 234 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DA----------------------- 234 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HH-----------------------
Confidence 888888888888877765432 23344444444443332222221 22
Q ss_pred CccccCCChHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 035659 254 RDLEFGRWPNEALSIFHELQLSKNVNPDE--FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331 (655)
Q Consensus 254 ~~~~~~~~~~~A~~l~~~m~~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 331 (655)
+++.+.. .-+|. ..|++|.+-|.+.|.++.|..+|.+.+.. ..++.-+..+.++|+.-.
T Consensus 235 --------------iiR~gi~---rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 235 --------------IIRGGIR---RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred --------------HHHhhcc---cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHH
Confidence 2222221 12232 23444555555555555555555544432 122222333333332110
Q ss_pred ----------------------CHHHHHHHHhhcCC---------------CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 035659 332 ----------------------NLDKALEVFHTVKS---------------RDVFVWSTMIAGFAMYGCGREALDLFSRM 374 (655)
Q Consensus 332 ----------------------~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (655)
+++-...-|+.+.. .++..|..-+.. ..|+..+-...|.+.
T Consensus 296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteA 373 (835)
T KOG2047|consen 296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEA 373 (835)
T ss_pred HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHH
Confidence 11222222322221 123333333322 234555556666665
Q ss_pred HHcCCCCC------HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC---cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 375 QEAKVKPN------AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 375 ~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
... +.|- ...|..+..-|...|+++.|..+|++..+. ..+-- ..+|..-.++=.+..+++.|++++++.
T Consensus 374 v~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 374 VKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 543 2331 233555555666667777777777666542 11110 234444445555566666666666654
Q ss_pred ---CCC-----------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHH
Q 035659 446 ---PIV-----------------PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505 (655)
Q Consensus 446 ---~~~-----------------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 505 (655)
|-. .+..+|..++..--..|-++.-..++++++++.--.|..-...+..+....-++++.
T Consensus 452 ~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 452 THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHH
Confidence 111 123345555555555566666666666666655333344444444444444455555
Q ss_pred HHH
Q 035659 506 ELR 508 (655)
Q Consensus 506 ~~~ 508 (655)
+++
T Consensus 532 k~Y 534 (835)
T KOG2047|consen 532 KAY 534 (835)
T ss_pred HHH
Confidence 544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-07 Score=88.75 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=89.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cC
Q 035659 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH----SG 397 (655)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g 397 (655)
....+|...|++++|.++++.. .+.......+..|.+.++.+.|.+.++.|.+. . +..+...+..++.. ..
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCch
Confidence 3344566677777777777665 44555566677777777777777777777763 2 33344444444332 22
Q ss_pred cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCH-HHHHHHH
Q 035659 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENV-ELAEYAC 474 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~ 474 (655)
.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++++. ...| |+.++..++......|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 466777777776543 3455556666666666666666666666553 2222 344555555555555555 5556666
Q ss_pred HHHhccCCCC
Q 035659 475 SHLLELEPEN 484 (655)
Q Consensus 475 ~~~~~~~p~~ 484 (655)
.++.+..|..
T Consensus 260 ~qL~~~~p~h 269 (290)
T PF04733_consen 260 SQLKQSNPNH 269 (290)
T ss_dssp HHCHHHTTTS
T ss_pred HHHHHhCCCC
Confidence 6666666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.2e-06 Score=74.72 Aligned_cols=198 Identities=16% Similarity=0.075 Sum_probs=151.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAM 360 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 360 (655)
+..-+.-.|...|+...|+.-+++.++.. +.+..++..+...|.+.|..+.|.+.|+...+ .+....|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 34455667888899999999999998876 55677888888889999999999988887653 466778888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHH
Q 035659 361 YGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEA 438 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A 438 (655)
.|++++|...|++....-.-| -..||..+.-+..+.|+.+.|..+|++..+. .|+ ......+.+.....|++-.|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHH
Confidence 899999999998887643222 2467777777777888999999988888753 443 55677788888888888888
Q ss_pred HHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 439 VEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 439 ~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
..+++.. ...++..+.-..|..-...|+.+.+.+.-.++...-|...
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 8888776 3346666666677777788888888877777777777553
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-06 Score=85.58 Aligned_cols=384 Identities=13% Similarity=0.043 Sum_probs=233.7
Q ss_pred HHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC
Q 035659 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDD-LFISNSLIHFYAICGD 189 (655)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~ 189 (655)
.+....|+++.|+..|.+.+... ++|..-|+.=..+++..|+++.|.+=-..-++.. |+ ..-|+-+..++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhccc
Confidence 34567899999999998873322 3478888888899999999998887766666653 44 5678888888888999
Q ss_pred HHHHHHHHhhcCCC---CeeHHHHHHHHHHhCCChhHHHHHHH------HHHHC---CCCCCHhhHHHHHHHHhccCc-c
Q 035659 190 LAMAYCVFVMIGKK---DVVSWNSMISGFVQGGFFEKAIELYR------EMEME---NVKPDEVTMVAVLSACAKKRD-L 256 (655)
Q Consensus 190 ~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~---g~~p~~~t~~~ll~~~~~~~~-~ 256 (655)
+++|+..|.+-.+. |...++-+..++.... ++.+.|. .+... ........|..++...-+... +
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999877653 4556666766661111 1111111 11000 001112233333333322110 0
Q ss_pred ccCCC---hHHHHHHHHH-----HHHCC------CCCC------------C----------HHHHHHHHHHHhccCCHHH
Q 035659 257 EFGRW---PNEALSIFHE-----LQLSK------NVNP------------D----------EFTFVSVLSACAQLGAMDI 300 (655)
Q Consensus 257 ~~~~~---~~~A~~l~~~-----m~~~~------~~~p------------~----------~~t~~~ll~~~~~~g~~~~ 300 (655)
..-.. ...|...+.. +...+ +..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 00000 0011110000 00000 0111 1 1124556677777788888
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCh----------hHHHHHHHHHHHcCChHHHHHH
Q 035659 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDV----------FVWSTMIAGFAMYGCGREALDL 370 (655)
Q Consensus 301 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~ 370 (655)
+.+-+....+.. .+..-++....+|...|.+..+...-+...+.+. .+...+..+|.+.++++.++..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 888888888765 5666677788888888888777666655443321 1222244466677888889999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCc-chHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 035659 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV-KHYTCMVDMLGRAGLLDEAVEFIEKM-PIV 448 (655)
Q Consensus 371 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~y~~li~~~~~~g~~~~A~~~~~~m-~~~ 448 (655)
|.+.......||..+ +....+++........ -+.|.. .---.-...+.+.|++..|+..|.++ ...
T Consensus 321 ~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 888766544443222 2223334433333322 223332 11111245567888888888888876 333
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 449 P-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 449 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
| |...|.....+|.+.|++..|+.-.+..++++|+....|..-+.++....+|++|.+.|++-.+..
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 567888888888888888888888888888888888888888888888888888888888766643
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.3e-05 Score=82.97 Aligned_cols=209 Identities=14% Similarity=0.166 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCchhhHHHHHHH---------------------------HHhcC
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQG--IKLNCYLTTSLIDM---------------------------YTKCG 331 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~---------------------------~~~~g 331 (655)
|....+....++...+-..+-.+++++++-.+ +.-+....|.|+-. ....+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 34445566667777777777777777765321 11222222322222 22334
Q ss_pred CHHHHHHHHhhcCC-------------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 035659 332 NLDKALEVFHTVKS-------------------------RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386 (655)
Q Consensus 332 ~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 386 (655)
-+++|..+|+...- .....|..+..+-.+.|...+|++-|-+. -|+..|
T Consensus 1063 LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y 1136 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNY 1136 (1666)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHH
Confidence 56677777765431 13457899999999999999988877433 267789
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 035659 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHEN 466 (655)
Q Consensus 387 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 466 (655)
..++..+.+.|.+++-..++...+++ .-+|. .-+.||-+|++.+++.+-++++. -||..-...+..-|...|.
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~--id~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKK-VREPY--IDSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHh-hcCcc--chHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhh
Confidence 99999999999999999999888775 55555 44589999999999999888774 3788888888999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 467 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
++.|.-++... +.|..|+..+...|.+..|...-++
T Consensus 1210 y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1210 YEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99998877654 5677777788888877776654433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.5e-05 Score=76.27 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=59.6
Q ss_pred CCChhHHHH--HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 448 VPGASVWGA--LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 448 ~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
.|....|.. +...+-..|+++.|+...+.++.--|.-...|..-+.++...|..++|...+++..+...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 567777765 445678899999999999999999998888999999999999999999999999887543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-05 Score=84.71 Aligned_cols=447 Identities=12% Similarity=0.055 Sum_probs=268.2
Q ss_pred HHHHHHHHHhCCCCC-hhhhhHHHHhhhcCCCCChHHHHHHhhcCC---CCCcchHHHHHHHHHhCCCcHHHHHHHHHhh
Q 035659 55 KQIHTQMLRTGLFFD-PYSASKLFTPCALGTFSSLEYAREMFDQIP---QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLV 130 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~-~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 130 (655)
..++..+....+.++ ...|..|-..|.... +...|.+.|+..- ..+..+|..+...|++..+++.|..+.-..-
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~--Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSD--DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 445555554444443 356788888888877 8888999998754 4677789999999999999999998844331
Q ss_pred hcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHH-
Q 035659 131 YNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWN- 209 (655)
Q Consensus 131 ~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~- 209 (655)
+......-...|...--.+.+.++...+..-++..++.. +.|...|..|..+|.++|++..|.++|.+...-++.+|-
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 221111122233334445567788888888888888876 678889999999999999999999999888764443332
Q ss_pred --HHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHhhHHHHHHHHhccCccccCCC-hHHHHHHHHHHHHCC----
Q 035659 210 --SMISGFVQGGFFEKAIELYREMEME------NVKPDEVTMVAVLSACAKKRDLEFGRW-PNEALSIFHELQLSK---- 276 (655)
Q Consensus 210 --~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~~~~-~~~A~~l~~~m~~~~---- 276 (655)
-....-+..|.+.+|+..+...... +..--..++..+...+.-.|-...+.. .+++++.|.-.....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 2233456689999999988876532 111122333333332222222210000 223333333222211
Q ss_pred ---------------CCCCC---HHHHHHHHHHHhccCCH---H---HHHHHHHHHHHcCCCCchhhHHHHHHHHHh---
Q 035659 277 ---------------NVNPD---EFTFVSVLSACAQLGAM---D---IGVQIHAKMKKQGIKLNCYLTTSLIDMYTK--- 329 (655)
Q Consensus 277 ---------------~~~p~---~~t~~~ll~~~~~~g~~---~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--- 329 (655)
-+.|| ......+..-.-..+.. | .|-+.+-. ...+..+...|..|+..|.+
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHHH
Confidence 01222 22122222112222221 1 11111111 11122334555556555543
Q ss_pred -cC----CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH
Q 035659 330 -CG----NLDKALEVFHTVK---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE 401 (655)
Q Consensus 330 -~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 401 (655)
+| +...|...+.... ..+...||.|.-. ...|.+.-|...|-+-... -+-+..+|..+.-.|....+++.
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHH
Confidence 22 2345666666543 3567788887655 5556777777777665554 23366778888777888899999
Q ss_pred HHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCChhHHHHHHHHHHhcCCHHHH---
Q 035659 402 GRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPGASVWGALLGACKIHENVELA--- 470 (655)
Q Consensus 402 a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a--- 470 (655)
|...|.... .+.|+ ..-|-.........|+.-++..+|..- +--|+..-|-....--..+|+.++-
T Consensus 869 A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t 945 (1238)
T KOG1127|consen 869 AEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINT 945 (1238)
T ss_pred hhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHH
Confidence 999999886 44554 444544444455677777888777652 2335555555555455566665544
Q ss_pred -------HHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 471 -------EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 471 -------~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
.-..++.+...|+...+|...+....+.+.+++|.+...+.
T Consensus 946 ~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 946 ARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33445555567888899999999999999888888776654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5e-05 Score=79.92 Aligned_cols=376 Identities=13% Similarity=0.104 Sum_probs=236.7
Q ss_pred CChhhhhHHHH--hhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCC--------CC
Q 035659 68 FDPYSASKLFT--PCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPY--------FP 137 (655)
Q Consensus 68 ~~~~~~~~ll~--~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~p 137 (655)
-|..+-.++++ .|.--| +++.|.+-.+.+.. -..|..|.+.+++..+.+-|.-.+-.|....|. .|
T Consensus 724 Cd~~TRkaml~FSfyvtiG--~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIG--SMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cCHHHHHhhhceeEEEEec--cHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 46677777775 477788 99999888777653 456999999999999988887776666322221 23
Q ss_pred CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCeeHHHHHHHHHH
Q 035659 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVVSWNSMISGFV 216 (655)
Q Consensus 138 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~ 216 (655)
+ .+=..+.......|.+++|+.++++-.+.. .|=..|-..|.+++|.++-+.-.+ .=-.||......+-
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 2 232333333467888999999999887653 244567788999999988754322 11236666777777
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC
Q 035659 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296 (655)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g 296 (655)
..++.+.|++.|++-.. ..++. .+.+.. ...+++.|-+- ..|...|.-...-+-..|
T Consensus 870 ar~Di~~AleyyEK~~~-------hafev-~rmL~e---------~p~~~e~Yv~~------~~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGV-------HAFEV-FRMLKE---------YPKQIEQYVRR------KRDESLYSWWGQYLESVG 926 (1416)
T ss_pred hhccHHHHHHHHHhcCC-------hHHHH-HHHHHh---------ChHHHHHHHHh------ccchHHHHHHHHHHhccc
Confidence 78889999988875421 11110 000000 00222222111 224455555666667789
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
+++.|..+|..+.+ |-+++...|-.|+.++|-++-++- .|......+...|-..|++.+|...|.+.+.
T Consensus 927 emdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 927 EMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred chHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999987765 456777778889999998887653 4666677788889999999999999987654
Q ss_pred cCCCCCHHHHHHHHHHHH---------------ccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHH
Q 035659 377 AKVKPNAVTFTNVLCACS---------------HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441 (655)
Q Consensus 377 ~g~~p~~~t~~~ll~a~~---------------~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~ 441 (655)
|...|+.|- ...+.-.|-.+|++. |.. ..--+..|-++|.+.+|+++
T Consensus 996 ---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 996 ---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred ---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHH
Confidence 223333222 222344455555544 211 12345568888888888776
Q ss_pred HHhC-------------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----------------------CCCC--
Q 035659 442 IEKM-------------PIVPGASVWGALLGACKIHENVELAEYACSHLLEL----------------------EPEN-- 484 (655)
Q Consensus 442 ~~~m-------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------------------~p~~-- 484 (655)
-=+- .-..|+...+.-..-+..+.++++|..++-.+.+. -|..
T Consensus 1058 AF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~ 1137 (1416)
T KOG3617|consen 1058 AFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDD 1137 (1416)
T ss_pred HHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCC
Confidence 3221 11235555565556667777777776655444331 1111
Q ss_pred -------cchHHHHHHHHHhcCCchhHHHHHH
Q 035659 485 -------HGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 485 -------~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
......++..|.++|.+..|.+=|.
T Consensus 1138 ~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred CccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 1356678889999998887766554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00016 Score=77.86 Aligned_cols=278 Identities=15% Similarity=0.169 Sum_probs=177.6
Q ss_pred cCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHH
Q 035659 187 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266 (655)
Q Consensus 187 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~ 266 (655)
.+.++.|.++-++..+| ..|..+..+-.+.|...+|++-|-+. -|+..|..+++.+.+.|.++ +-.
T Consensus 1088 i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e------dLv 1153 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE------DLV 1153 (1666)
T ss_pred hhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH------HHH
Confidence 34556666665555544 45888888888888888888766443 35667888888888888876 666
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 035659 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR 346 (655)
Q Consensus 267 ~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 346 (655)
+++.-.++.. -.|... +.++-+|++.+++.+-+++. .-|+......+.+-+...|.++.|.-+|..
T Consensus 1154 ~yL~MaRkk~-~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---- 1219 (1666)
T KOG0985|consen 1154 KYLLMARKKV-REPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---- 1219 (1666)
T ss_pred HHHHHHHHhh-cCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH----
Confidence 6665555544 455443 46777888888877666554 247777777777878888888888777764
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHH
Q 035659 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426 (655)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li 426 (655)
+.-|..+...+...|++..|...-++.- +..||..+-.+|...+.+.-| +|... .+.....-..-|+
T Consensus 1220 -vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli 1286 (1666)
T KOG0985|consen 1220 -VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELI 1286 (1666)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHH
Confidence 4568888888888898888887665443 567888888888876655544 33321 2223344566788
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-C-C------CCcchHHHHHHHHH
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLEL-E-P------ENHGALVLLSNIYA 496 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-p------~~~~~~~~l~~~~~ 496 (655)
.-|...|.++|-+.+++.. +.+. .--.|+-|.-.|.+.+ +++..+.++-.... + | +....|.-|.-.|.
T Consensus 1287 ~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~ 1365 (1666)
T KOG0985|consen 1287 EYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYD 1365 (1666)
T ss_pred HHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888764 4332 2234444444444433 33333333322211 1 1 12345666777777
Q ss_pred hcCCchhHHH
Q 035659 497 KTGKWDNVSE 506 (655)
Q Consensus 497 ~~g~~~~a~~ 506 (655)
+-..|+.|.-
T Consensus 1366 ~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1366 KYEEYDNAAL 1375 (1666)
T ss_pred hhhhhhHHHH
Confidence 7777776654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.4e-05 Score=71.95 Aligned_cols=189 Identities=12% Similarity=0.071 Sum_probs=103.4
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHHcCChHHH
Q 035659 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV---KSRDVFVWSTMIAGFAMYGCGREA 367 (655)
Q Consensus 291 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 367 (655)
.+...|+...+......+++.. +.|...+..-..+|...|++..|+.=++.. ...+...+.-+-..+...|+.+.+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 3445566666666666666643 456666666677777777777776554443 334555666666666777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHH----HH---------HHHHHccCcHHHHHHHHHHcchhcCccCC-----cchHHHHHHHH
Q 035659 368 LDLFSRMQEAKVKPNAVTFT----NV---------LCACSHSGLVDEGRMFFNQMEPVYGVVPG-----VKHYTCMVDML 429 (655)
Q Consensus 368 ~~~~~~m~~~g~~p~~~t~~----~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~li~~~ 429 (655)
+...++..+ +.||....- .| +......+.+.++.+-.+...+. .|. ...+..+-..|
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecc
Confidence 777776665 455543211 10 01122334444444444444322 232 11223333445
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 430 GRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
...|++.+|++.-.+. .+.|| +.++.--..+|..-..++.|+.-|+++.+.+++|.
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 5556666666555443 34444 45555555666666666666666666666666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.1e-05 Score=77.49 Aligned_cols=194 Identities=9% Similarity=0.075 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeH---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 035659 174 LFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVS---WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247 (655)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 247 (655)
...+..+...|...|+.+.+.+.+....+ ++... .......+...|++++|.+++++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 33455566666667777776555544332 22222 2222344566777888887777776652 122223222 1
Q ss_pred HHHhccCccccCCChHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 035659 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE-FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM 326 (655)
Q Consensus 248 ~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 326 (655)
..+...+..... .+.+.+.+.. ... ..|+. .....+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 84 ~~~~~~~~~~~~--~~~~~~~l~~--~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i 157 (355)
T cd05804 84 LGAFGLGDFSGM--RDHVARVLPL--WAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHV 157 (355)
T ss_pred HHHHHhcccccC--chhHHHHHhc--cCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 122222221100 1134444333 111 22332 233344455666667777777776666654 3345555666666
Q ss_pred HHhcCCHHHHHHHHhhcCCC-----Ch--hHHHHHHHHHHHcCChHHHHHHHHHHH
Q 035659 327 YTKCGNLDKALEVFHTVKSR-----DV--FVWSTMIAGFAMYGCGREALDLFSRMQ 375 (655)
Q Consensus 327 ~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (655)
|...|++++|...+++.... +. ..|..+...+...|+.++|..+|++..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666666666666654431 11 123345555556666666666666554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.9e-05 Score=76.64 Aligned_cols=301 Identities=12% Similarity=0.006 Sum_probs=153.0
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHhhHH-HHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEMENV-KPDEVTMV-AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF 283 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~-~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~ 283 (655)
..|..+...+...|+.+++...+.+..+... .++..... .....+...|+.+ +|.+.+++..... +.|..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~------~A~~~~~~~l~~~--P~~~~ 78 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLP------KALALLEQLLDDY--PRDLL 78 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHC--CCcHH
Confidence 3455566666666666666555555443211 12221111 1122334456644 7777777766542 33333
Q ss_pred HHHH---HHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 035659 284 TFVS---VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAG 357 (655)
Q Consensus 284 t~~~---ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 357 (655)
.+.. ........+..+.+.+.+... ....+........+...+...|++++|.+.+++..+ .+...+..+...
T Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 79 ALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred HHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3332 111112234444444444431 111122233444555667777777777777777653 245566667777
Q ss_pred HHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchH-H--HHHHHHHh
Q 035659 358 FAMYGCGREALDLFSRMQEAKV-KPNA--VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY-T--CMVDMLGR 431 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y-~--~li~~~~~ 431 (655)
|...|++++|..++++...... .|+. ..|..+...+...|++++|..+++.........+..... + .++..+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 7777777777777777665321 1222 234456666777777777777777764321111111111 1 22333333
Q ss_pred cCCHHHHHHH---HHh---C-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---------CcchHHHHHHHH
Q 035659 432 AGLLDEAVEF---IEK---M-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE---------NHGALVLLSNIY 495 (655)
Q Consensus 432 ~g~~~~A~~~---~~~---m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~ 495 (655)
.|..+.+.++ ... . +.............++...|+.+.|...++.+....-. ........+.++
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 4432222222 111 1 11011122224455566777777777777776553211 233445666677
Q ss_pred HhcCCchhHHHHHHHHHhCC
Q 035659 496 AKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~~g 515 (655)
...|++++|.+.+......+
T Consensus 318 ~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 318 FAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 78888888888887776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9e-05 Score=69.11 Aligned_cols=403 Identities=11% Similarity=0.060 Sum_probs=192.8
Q ss_pred HHHHhhhcCCCCChHHHHHHhhcCCCC---CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHH-HHHHH
Q 035659 75 KLFTPCALGTFSSLEYAREMFDQIPQP---NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV-IKAAA 150 (655)
Q Consensus 75 ~ll~~y~~~g~~~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~l-l~~~~ 150 (655)
+.+.-..+-. ++++|++++..-.++ +....+.|-.+|-...++..|-+.++++ .. ..|...-|..- ...+.
T Consensus 15 aviy~lI~d~--ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL-~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 15 AVVYRLIRDA--RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQL-GQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHHHHHh--hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--hChHHHHHHHHHHHHHH
Confidence 3333333444 666666666544432 2333455555566666666666666665 22 22333333211 12333
Q ss_pred ccCCchHHHHHHHHHHHhCCCCChhHHHHHH--H--HHHhcCCHHHHHHHHhhcCC-CCeeHHHHHHHHHHhCCChhHHH
Q 035659 151 RLVQFRVGQAIHGMVIKSSFEDDLFISNSLI--H--FYAICGDLAMAYCVFVMIGK-KDVVSWNSMISGFVQGGFFEKAI 225 (655)
Q Consensus 151 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li--~--~~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~ 225 (655)
+.+.+..|..+...|... ....+-.+ . .....+++..++.+.++.+. .+..+.+...-...+.|++++|+
T Consensus 90 ~A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 445555555555554321 11111111 1 11234556666666666653 44445455555555666666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHhccCCHHHH
Q 035659 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF----TFVSVLSACAQLGAMDIG 301 (655)
Q Consensus 226 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~----t~~~ll~~~~~~g~~~~a 301 (655)
+-|+...+-|---....|+..+..|.+ ++.. .|++...++..+| ++-... .-.-.+++ ...|+ -
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy~~-~qya------sALk~iSEIieRG-~r~HPElgIGm~tegiDv-rsvgN---t 232 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHYSS-RQYA------SALKHISEIIERG-IRQHPELGIGMTTEGIDV-RSVGN---T 232 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHhh-hhHH------HHHHHHHHHHHhh-hhcCCccCccceeccCch-hcccc---h
Confidence 666665544322233445554444433 2322 5666666655555 321100 00000000 00000 0
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 302 VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-----DVFVWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
..++... -+..+|.-...+.+.|+.+.|.+.+-.|+.+ |+++...+.-.- ..+++.+..+-+.-+.+
T Consensus 233 ~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 233 LVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ 304 (459)
T ss_pred HHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh
Confidence 0000000 0123444445567889999999999999864 666665543221 23445555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCc-cCCcchHHHHHHHHHh-cCCHHHHHHHHHhCCCCC--Chh
Q 035659 377 AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV-VPGVKHYTCMVDMLGR-AGLLDEAVEFIEKMPIVP--GAS 452 (655)
Q Consensus 377 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~y~~li~~~~~-~g~~~~A~~~~~~m~~~p--~~~ 452 (655)
.+. -...||..++-.||+..-++.|-.++.+-... .. -.+...|+ |++++.- .-..++|.+-++.+.-.- ...
T Consensus 305 ~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLR 381 (459)
T KOG4340|consen 305 QNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLR 381 (459)
T ss_pred cCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 433 34678999999999999999998888754321 11 11223333 3344433 335566665554431000 000
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 453 VWGALLGACKIHEN---VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 453 ~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
....-+.--+..++ ...+.+-+++.+++-- ...+.-++.|.+..++..++++|..-.+
T Consensus 382 klAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 382 KLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 00000111111111 1222333444444321 2344556778888888888888876554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00031 Score=82.06 Aligned_cols=414 Identities=10% Similarity=-0.001 Sum_probs=234.2
Q ss_pred HHHhcCcchHHHHHHHHHHhCCC--C-C----hhhhhHHHHhhhcCCC--CChHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 035659 45 IKQCKNIKQLKQIHTQMLRTGLF--F-D----PYSASKLFTPCALGTF--SSLEYAREMFDQIPQPNLYTWNTLIRAYSS 115 (655)
Q Consensus 45 l~~~~~~~~~~~~~~~~~~~g~~--~-~----~~~~~~ll~~y~~~g~--~~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 115 (655)
+.+.....+..++.+.+.+.|+. + + .+-+..|+.-+.+... ...++.. ..+......+..
T Consensus 285 ~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~-----------~lh~raa~~~~~ 353 (903)
T PRK04841 285 IVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELP-----------ELHRAAAEAWLA 353 (903)
T ss_pred HHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHH-----------HHHHHHHHHHHH
Confidence 33333344446677777777752 1 1 2445666655443210 0111111 112333445666
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCCcchHHHHH----HHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 035659 116 SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI----KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191 (655)
Q Consensus 116 ~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll----~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 191 (655)
.|++.+|....... +|......++ ......|+.+.+...+..+.......+..........+...|+++
T Consensus 354 ~g~~~~Al~~a~~a-------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 354 QGFPSEAIHHALAA-------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred CCCHHHHHHHHHHC-------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 77777666655444 1211111222 223445666666666555422111222333344455566778888
Q ss_pred HHHHHHhhcCC----CC---e-----eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHhccCc
Q 035659 192 MAYCVFVMIGK----KD---V-----VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE----VTMVAVLSACAKKRD 255 (655)
Q Consensus 192 ~A~~~f~~~~~----~~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~ 255 (655)
+|...++.... .+ . .....+...+...|++++|...+++..+.-...+. ...+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 88877765421 11 1 11122334456788999999888887653111121 233445555667788
Q ss_pred cccCCChHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC---CchhhHHHHH
Q 035659 256 LEFGRWPNEALSIFHELQLS----KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ----GIK---LNCYLTTSLI 324 (655)
Q Consensus 256 ~~~~~~~~~A~~l~~~m~~~----~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~---~~~~~~~~li 324 (655)
++ +|...+.+.... +...+...++..+..++...|+++.|...+++.... +.. .....+..+.
T Consensus 507 ~~------~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 507 LA------RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HH------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 65 787777776532 101111234555666778899999999988877652 211 1233455566
Q ss_pred HHHHhcCCHHHHHHHHhhcCC------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHH-----HHH
Q 035659 325 DMYTKCGNLDKALEVFHTVKS------R--DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK-PNAVTFT-----NVL 390 (655)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~-----~ll 390 (655)
..+...|++++|...+.+... + ....+..+...+...|+.++|.+.+.+....... .....+. ..+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 677778999999888877532 1 1234445566778899999999998887542111 1111111 112
Q ss_pred HHHHccCcHHHHHHHHHHcchhcCccCC---cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-hhHHHHHHH
Q 035659 391 CACSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPG-ASVWGALLG 459 (655)
Q Consensus 391 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~ 459 (655)
..+...|+.+.|.+.+...... ..... ...+..+..++...|+.++|...+++. +..++ ..+...+..
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3345578999999988776532 11111 011345667788899999998888775 22222 245666677
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCC
Q 035659 460 ACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
++...|+.++|...+.+++++...
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCc
Confidence 888999999999999999987643
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.7e-06 Score=92.23 Aligned_cols=201 Identities=15% Similarity=0.145 Sum_probs=167.1
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 035659 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR--------DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385 (655)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 385 (655)
+-+...|-..+......+++++|++++++.... -.-.|.++++.-...|.-+...++|+++.+- .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445667888888888999999999999887542 2457888888888888888899999999873 333456
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---ChhHHHHHHHHH
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP---GASVWGALLGAC 461 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 461 (655)
|..|...|.+.+..++|.++++.|.++++ ....+|...++.+.+..+-+.|..++++. ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888889999999999999999998766 56678999999999999999999999875 3223 345556666677
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 035659 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 518 (655)
.++|+.+.+..+|+.++...|.-...|+..+++-.+.|..+.+..+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 889999999999999999999999999999999999999999999999999987754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-06 Score=84.57 Aligned_cols=219 Identities=15% Similarity=0.075 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC-CC----ChhHHHHHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK-SR----DVFVWSTMIA 356 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~ 356 (655)
.....-+.+++..+|+.+.+. .++.+.. .|.......+...+...++-+.+..-+++.. +. +.........
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 344556677778888766433 3343333 5665555555544444356666666665543 22 1122222223
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH----HHHhc
Q 035659 357 GFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD----MLGRA 432 (655)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~----~~~~~ 432 (655)
.+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ +..|. +...+.. .+.-.
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCc
Confidence 455679999999988643 3556666778889999999999999999974 34443 3333333 33334
Q ss_pred CCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc-hhHHHHHH
Q 035659 433 GLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW-DNVSELRK 509 (655)
Q Consensus 433 g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 509 (655)
+.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 4799999999998 44578889999999999999999999999999999999999999999999999998 56777888
Q ss_pred HHHhC
Q 035659 510 HMRVS 514 (655)
Q Consensus 510 ~m~~~ 514 (655)
.++..
T Consensus 261 qL~~~ 265 (290)
T PF04733_consen 261 QLKQS 265 (290)
T ss_dssp HCHHH
T ss_pred HHHHh
Confidence 87763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00023 Score=83.17 Aligned_cols=326 Identities=12% Similarity=0.042 Sum_probs=210.0
Q ss_pred HHHhcCCHHHHHHHHhhcCC----CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCC------CCCHh--hHHHHHHHH
Q 035659 183 FYAICGDLAMAYCVFVMIGK----KDVVSWNSMISGFVQGGFFEKAIELYREMEMENV------KPDEV--TMVAVLSAC 250 (655)
Q Consensus 183 ~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~--t~~~ll~~~ 250 (655)
.....|+++.+..+++.++. .+..........+...|++++|..++....+.-- .+... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456778888888877642 2333334455566778999999999987754311 11111 112222344
Q ss_pred hccCccccCCChHHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCchhhHH
Q 035659 251 AKKRDLEFGRWPNEALSIFHELQLSKNVNPDE----FTFVSVLSACAQLGAMDIGVQIHAKMKKQ----GI-KLNCYLTT 321 (655)
Q Consensus 251 ~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~-~~~~~~~~ 321 (655)
...|+++ +|...+++..... -..+. ...+.+...+...|+++.|...+.+.... |- .....+..
T Consensus 463 ~~~g~~~------~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 463 INDGDPE------EAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HhCCCHH------HHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 5677755 9999998876532 11121 23455556677899999999999888753 21 11234556
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC--HHHH
Q 035659 322 SLIDMYTKCGNLDKALEVFHTVKS-------R----DVFVWSTMIAGFAMYGCGREALDLFSRMQEA--KVKPN--AVTF 386 (655)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~ 386 (655)
.+...+...|+++.|...+++... + ....+..+...+...|++++|...+.+.... ...+. ...+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 677788899999999998876542 1 1223445556677789999999999887653 11122 2334
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCh----hHHH
Q 035659 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY-----TCMVDMLGRAGLLDEAVEFIEKMPIV--PGA----SVWG 455 (655)
Q Consensus 387 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~ 455 (655)
..+.......|+.++|...+...............+ ......+...|+.+.|.+++...... ... ..+.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 445556778999999999988875421111111111 11224456689999999998776211 111 1234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 456 ALLGACKIHENVELAEYACSHLLELE------PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 456 ~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.+..++...|+.++|...++++++.. +....++..++.+|...|+.++|.+.+.+..+..
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56677888999999999999998753 1123467788899999999999999999887644
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-07 Score=58.63 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=25.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 169 SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG 201 (655)
Q Consensus 169 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 201 (655)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00024 Score=73.99 Aligned_cols=262 Identities=14% Similarity=0.155 Sum_probs=153.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 035659 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292 (655)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~ 292 (655)
.+-.....+.+|+.+++.+..... -..-|..+.+.|+..|+++ .|.++|.+.- .++-.|..|
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe------~ae~lf~e~~----------~~~dai~my 801 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE------IAEELFTEAD----------LFKDAIDMY 801 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH------HHHHHHHhcc----------hhHHHHHHH
Confidence 344455666666666666655422 2233555666666666654 6666654321 234455566
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 035659 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (655)
.+.|+++.|.++-.+. .|.+.....|-+-..-+-+.|++.+|++++-.+..|+. .|..|-++|..+..+++..
T Consensus 802 ~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred hccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHH
Confidence 6777776666654443 23334445555555555666777777777666666653 3566777777777666665
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCC----
Q 035659 373 RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV---- 448 (655)
Q Consensus 373 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~---- 448 (655)
+-.... -..|-..+..-+...|++..|...|-+.. -|.+-+++|...+.+++|.++-+.-+-.
T Consensus 875 k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k 941 (1636)
T KOG3616|consen 875 KHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEK 941 (1636)
T ss_pred HhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHH
Confidence 443211 13455556667788899999988876653 3567788898999999998887664311
Q ss_pred CChhHHHHH------HHHHHhcCCHHHHH-------------HHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 449 PGASVWGAL------LGACKIHENVELAE-------------YACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 449 p~~~~~~~l------l~~~~~~g~~~~a~-------------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
.-...|.-- +..+-++|-.+.|. .+.+-..+- .-+.....++.-+...|++++|-+-+-
T Consensus 942 ~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyv 1019 (1636)
T KOG3616|consen 942 HVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYV 1019 (1636)
T ss_pred HHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhH
Confidence 012233221 12234455444443 333332222 223556677777888999999977766
Q ss_pred HHHhC
Q 035659 510 HMRVS 514 (655)
Q Consensus 510 ~m~~~ 514 (655)
+..+.
T Consensus 1020 eaikl 1024 (1636)
T KOG3616|consen 1020 EAIKL 1024 (1636)
T ss_pred HHhhc
Confidence 55443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.1e-07 Score=57.94 Aligned_cols=33 Identities=36% Similarity=0.617 Sum_probs=22.6
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344 (655)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 344 (655)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566677777777777777777777777776663
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.2e-05 Score=71.22 Aligned_cols=302 Identities=14% Similarity=0.063 Sum_probs=164.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC---CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHH-HHHHHhc
Q 035659 177 SNSLIHFYAICGDLAMAYCVFVMIGKK---DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA-VLSACAK 252 (655)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~ 252 (655)
+.+.+..+.+..++++|.+++..-.++ +....+.|..+|....++..|-+.++++-.. .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 455566667777888888887666553 4556777788888888888888888877654 343333321 1223333
Q ss_pred cCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 035659 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA--CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330 (655)
Q Consensus 253 ~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 330 (655)
.+.+. +|+.+...|... |+...-..-+.+ ....+++-.++.+.++.... -+..+.+...-...+.
T Consensus 91 A~i~A------DALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 91 ACIYA------DALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKE 157 (459)
T ss_pred hcccH------HHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeecc
Confidence 34433 666666555321 221111111111 22334444444444443321 1222333333334455
Q ss_pred CCHHHHHHHHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 035659 331 GNLDKALEVFHTVKSR----DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 331 g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 406 (655)
|+++.|.+-|+...+- ....||..+.. .+.|+++.|+++..+++++|++-.+. ++. |...++.. .
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPE-lgI--------Gm~tegiD-v 226 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPE-LGI--------GMTTEGID-V 226 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCc-cCc--------cceeccCc-h
Confidence 5555555555554431 23344443332 23455555555555555555442111 100 00000000 0
Q ss_pred HHcchhcCccCCcc-------hHHHHHHHHHhcCCHHHHHHHHHhCC----CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 035659 407 NQMEPVYGVVPGVK-------HYTCMVDMLGRAGLLDEAVEFIEKMP----IVPGASVWGALLGACKIHENVELAEYACS 475 (655)
Q Consensus 407 ~~~~~~~~~~p~~~-------~y~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 475 (655)
+.+ | .|-.. .+|.-...+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++..+.+-++
T Consensus 227 rsv----g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLq 300 (459)
T KOG4340|consen 227 RSV----G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQ 300 (459)
T ss_pred hcc----c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHH
Confidence 000 0 00011 22233344668899999999999995 34577777665433 23456777778888
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 476 HLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 476 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
-+++++|-...++..+.-.|++..-++-|..++-+
T Consensus 301 FLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 301 FLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 88889987788999999999999999999888754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=77.52 Aligned_cols=182 Identities=14% Similarity=0.041 Sum_probs=117.4
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DV---FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA--VTF 386 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~ 386 (655)
.....+..+...|.+.|++++|...|+++... +. ..|..+...|.+.|++++|+..++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556667777778888888888888776542 11 35666777788888888888888888764221111 133
Q ss_pred HHHHHHHHcc--------CcHHHHHHHHHHcchhcCccCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHH
Q 035659 387 TNVLCACSHS--------GLVDEGRMFFNQMEPVYGVVPGVK-HYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457 (655)
Q Consensus 387 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 457 (655)
..+..++... |+.++|.+.|+.+... .|+.. .+..+... +...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 3344444433 6677777777777643 34422 12111111 0011100 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 458 LGACKIHENVELAEYACSHLLELEPEN---HGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 458 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
...+...|++++|...++++++..|++ +.++..++.+|.+.|++++|...++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566888999999999999999987654 468899999999999999999998887664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.1e-05 Score=74.33 Aligned_cols=218 Identities=13% Similarity=0.108 Sum_probs=159.0
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh-
Q 035659 290 SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG-NLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCG- 364 (655)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~- 364 (655)
..+...+..++|..+..++++.. +-+..+|+....++.+.| ++++++..++++.+ ++..+|+...-.+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 33445577888999999988864 445567777777777777 67999999988764 4556787766666666653
Q ss_pred -HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhc---CCH----H
Q 035659 365 -REALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA---GLL----D 436 (655)
Q Consensus 365 -~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~---g~~----~ 436 (655)
++++.+++++.+... -|...|.....++.+.|+++++++.++.+.+. . .-+...|+....++.+. |.. +
T Consensus 124 ~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHH
Confidence 678899999988543 36778888888888899999999999999864 2 33456666666555554 323 4
Q ss_pred HHHHHHHh-CCCCC-ChhHHHHHHHHHHhc----CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-----------
Q 035659 437 EAVEFIEK-MPIVP-GASVWGALLGACKIH----ENVELAEYACSHLLELEPENHGALVLLSNIYAKTG----------- 499 (655)
Q Consensus 437 ~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------- 499 (655)
+++++..+ +...| |...|+.+...+... ++..+|..++.++.+.+|.++.+...|+..|+...
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 56666644 34445 578999999998874 44577999999999999999999999999998643
Q ss_pred -------CchhHHHHHHHH
Q 035659 500 -------KWDNVSELRKHM 511 (655)
Q Consensus 500 -------~~~~a~~~~~~m 511 (655)
..++|.++++.+
T Consensus 281 ~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccccccHHHHHHHHHHH
Confidence 235677777776
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.3e-06 Score=71.57 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=87.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 035659 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-P 446 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~ 446 (655)
.+|++..+ +.|+. +..+..++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 34543 44556667788888888888888764 344 4667777888888888888888888876 3
Q ss_pred CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 447 IVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 447 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
..| +...|..+..++...|++++|+..++++++..|+++..+.....+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 334 56778888888888888888888888888888888887777666554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00011 Score=76.98 Aligned_cols=237 Identities=11% Similarity=0.069 Sum_probs=178.3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 035659 170 FEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249 (655)
Q Consensus 170 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (655)
++|--..-..+...+.++|-...|..+|+++ ..|.-.|..|...|+..+|..+..+-.+ -+||..-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455556667888999999999999999875 4688899999999999999998888777 37888888888887
Q ss_pred HhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 035659 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329 (655)
Q Consensus 250 ~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 329 (655)
.....-++ +|.++++..... .-..+.....+.++++++.+.++.-.+.+ +....+|-.+.-++.+
T Consensus 467 ~~d~s~yE------kawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 467 LHDPSLYE------KAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred ccChHHHH------HHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 77666654 888888775432 11111111234688899998888877764 4567788888888889
Q ss_pred cCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 035659 330 CGNLDKALEVFHTVKS--R-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 330 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 406 (655)
+++++.|.+.|..... | +..+||.+-.+|.+.++..+|...+++..+.+ .-+-..|...+....+.|.+++|++.+
T Consensus 532 lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999999988753 3 56789999999999999999999999998876 334445555666678889999999998
Q ss_pred HHcchhcCccCCcchHHHHHHHH
Q 035659 407 NQMEPVYGVVPGVKHYTCMVDML 429 (655)
Q Consensus 407 ~~~~~~~~~~p~~~~y~~li~~~ 429 (655)
.++........|..+...++...
T Consensus 611 ~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 611 HRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHhhhhcccchhhHHHHHHH
Confidence 88876533344555555555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-05 Score=72.67 Aligned_cols=146 Identities=10% Similarity=0.060 Sum_probs=104.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCH
Q 035659 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435 (655)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 435 (655)
..|...|+++.+....+.+.. |. . .+...++.+++...++...+. -..+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCH
Confidence 456677777665444432221 11 0 112255667777777666542 234577888888888899999
Q ss_pred HHHHHHHHhC-CCCC-ChhHHHHHHHHH-HhcCC--HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 436 DEAVEFIEKM-PIVP-GASVWGALLGAC-KIHEN--VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 436 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
++|...|++. ...| +...+..+..++ ...|+ .++|..+++++++.+|++..++..++..+...|++++|...+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9998888886 4445 466777777763 56676 58999999999999999999999999999999999999999998
Q ss_pred HHhCC
Q 035659 511 MRVSG 515 (655)
Q Consensus 511 m~~~g 515 (655)
+.+..
T Consensus 170 aL~l~ 174 (198)
T PRK10370 170 VLDLN 174 (198)
T ss_pred HHhhC
Confidence 87753
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0047 Score=63.52 Aligned_cols=381 Identities=14% Similarity=0.069 Sum_probs=201.0
Q ss_pred HHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHHccCCc
Q 035659 77 FTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQF 155 (655)
Q Consensus 77 l~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~~~~~~ 155 (655)
=.+|+.-..+..++|...++...+-+..+...-...+-+.|++++|+++|+.+ ...+..- |...-..++.+-.
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L-~kn~~dd~d~~~r~nl~a~~a----- 157 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHL-AKNNSDDQDEERRANLLAVAA----- 157 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHH-----
Confidence 44555444447888888877555444444444455667778888888888877 3332211 1111111111111
Q ss_pred hHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhc--------CCCCee----------HHHHHHHHH
Q 035659 156 RVGQAIHGMVIKSSFEDD--LFISNSLIHFYAICGDLAMAYCVFVMI--------GKKDVV----------SWNSMISGF 215 (655)
Q Consensus 156 ~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~--------~~~~~~----------~~~~li~~~ 215 (655)
+... ..+......|+ -..+-.....++..|++.+|+++++.. .+.|.. .---|.-.+
T Consensus 158 --~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 158 --ALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred --hhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 0111 01222222221 122223445677889999999999877 221111 122355567
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCH---hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCC---------CCCCHH
Q 035659 216 VQGGFFEKAIELYREMEMENVKPDE---VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKN---------VNPDEF 283 (655)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~---------~~p~~~ 283 (655)
...|+.++|..++...+.... +|. .+...=|-+.....++..+ .++..++....... -.-..+
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~----~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i 309 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDG----DLLKSKKSQVFKLAEFLLSKLSKKQKQAI 309 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCch----HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 788999999999999988753 333 2222223333333333211 23333332221100 000111
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-cCCHHHHHHHHhhcCCC----ChhHHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK-CGNLDKALEVFHTVKSR----DVFVWSTMIAGF 358 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~----~~~~~~~li~~~ 358 (655)
..|..+-.+ -.+..+.+.++-.... +..|....-+.+..++-. .....+|.+++....+. ..+..-.++...
T Consensus 310 ~~N~~lL~l-~tnk~~q~r~~~a~lp--~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 310 YRNNALLAL-FTNKMDQVRELSASLP--GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHH-HhhhHHHHHHHHHhCC--ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 111111111 1223333333332221 122333333333333322 22466777777666543 345666777888
Q ss_pred HHcCChHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCc-cCCcchHHHH----
Q 035659 359 AMYGCGREALDLFS--------RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV-VPGVKHYTCM---- 425 (655)
Q Consensus 359 ~~~g~~~~A~~~~~--------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~y~~l---- 425 (655)
...|+++.|++++. ...+.+..|-.+. .+...+.+.++-+.|..++.+...-+.. .+......++
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 88999999999988 5666566665554 4555567777766677777666543322 1222333333
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 426 VDMLGRAGLLDEAVEFIEKM-P-IVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 426 i~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
+..-.+.|+-++|..+++++ . ..+|..+...++.+|+.. +.+.|+.+-.++
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 34445779999999999987 3 345677888888888764 577777666554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0012 Score=63.06 Aligned_cols=300 Identities=10% Similarity=0.045 Sum_probs=166.1
Q ss_pred HHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHH---HHHccCCchHHHHHHHHHHHhCCCCChhH-HHHHHHHHH
Q 035659 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIK---AAARLVQFRVGQAIHGMVIKSSFEDDLFI-SNSLIHFYA 185 (655)
Q Consensus 110 i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~ 185 (655)
-..+.-+|++.+|+.-|... +.-|+..|.++.+ .|...|+...|..=+..+++. .||-.. ..--...+.
T Consensus 45 Gk~lla~~Q~sDALt~yHaA-----ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAA-----VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHH-----HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 34445556666666666665 1224444444432 345556666666666666554 344221 111224566
Q ss_pred hcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHH
Q 035659 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265 (655)
Q Consensus 186 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A 265 (655)
|.|.+++|..=|+.+.+.+..- +....++.+.-..++-..+ ...+..+...|+.. .|
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~------~a 174 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQ------NA 174 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchh------hH
Confidence 7778888877777765532210 1111111111111111111 12222333444433 55
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 035659 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345 (655)
Q Consensus 266 ~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 345 (655)
++....+.+.. +.|...+..-..+|...|++..|..=+..+.+.. ..+....--+-..+.+.|+.+.++...++..+
T Consensus 175 i~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 66666555532 4455555555666666666666665555555443 22333444455556666666666666665543
Q ss_pred CChh------HHHHH---------HHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccCcHHHHHHHHH
Q 035659 346 RDVF------VWSTM---------IAGFAMYGCGREALDLFSRMQEAKVKPNAVT---FTNVLCACSHSGLVDEGRMFFN 407 (655)
Q Consensus 346 ~~~~------~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~ 407 (655)
-|.. .|..+ +......++|.++++..+...+.......++ +..+-.++...|.+.+|++.-.
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 2221 11111 1234557788888888888877433322333 3344455677899999999999
Q ss_pred HcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 408 QMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 408 ~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
++. .+.|+ +.++.--..+|.-..++++|+.-|+..
T Consensus 332 evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 332 EVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 887 45666 778888888999899999999999887
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.001 Score=67.46 Aligned_cols=390 Identities=14% Similarity=0.075 Sum_probs=239.8
Q ss_pred hcCCCCChHHHHHHhhcCC---CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCC-cchHHHHHHHHHccCCch
Q 035659 81 ALGTFSSLEYAREMFDQIP---QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPN-EFTFPFVIKAAARLVQFR 156 (655)
Q Consensus 81 ~~~g~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~ 156 (655)
...| +++.|+..|.... .+|-+.|+.-..+|+..|++++|++=-.+- ..+.|+ .-.|+-...++...|+++
T Consensus 13 ~s~~--d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~---~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 13 FSSG--DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKT---RRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred cccc--cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHH---HhcCCchhhHHHHhHHHHHhcccHH
Confidence 4456 9999999997643 468888999999999999999998765544 335666 346888888899999999
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh------hcCC-C------CeeHHHHHHHHHHhC-----
Q 035659 157 VGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV------MIGK-K------DVVSWNSMISGFVQG----- 218 (655)
Q Consensus 157 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~------~~~~-~------~~~~~~~li~~~~~~----- 218 (655)
+|..-+..-++.. +.+...++.|.+++.-. ..+.+.|. .... | .-..|..++..+-++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999888774 55677788888887211 11111111 1100 0 112344444333221
Q ss_pred -----CChhHHHHHHHHH-----HHCC-------CCCC----------------------HhhHHHHHHHHhccCccccC
Q 035659 219 -----GFFEKAIELYREM-----EMEN-------VKPD----------------------EVTMVAVLSACAKKRDLEFG 259 (655)
Q Consensus 219 -----g~~~~A~~~~~~m-----~~~g-------~~p~----------------------~~t~~~ll~~~~~~~~~~~~ 259 (655)
.+...|...+... ...| ..|. ..-...+.++..+..+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~---- 239 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD---- 239 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh----
Confidence 1111221111110 0001 1110 0112223333333333
Q ss_pred CChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc------hhhHHHHHHHHHhcCCH
Q 035659 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN------CYLTTSLIDMYTKCGNL 333 (655)
Q Consensus 260 ~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~ 333 (655)
++.|++-+..... +.-+..-++....++...|...+....-...++.|...- ......+..+|.+.+++
T Consensus 240 --f~~a~q~y~~a~e---l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 240 --FETAIQHYAKALE---LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred --HHHHHHHHHHHHh---HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 3367777766654 343333455556668888888888777777766653211 11222244577888899
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcchh
Q 035659 334 DKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA-VTFTNVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 334 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
+.|...|.+...+... -....+....++++.......- +.|.. .-...-...+.+.|++..|...|.++++.
T Consensus 315 ~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 9999999885432111 1112223344555555444433 33432 11222245678899999999999999874
Q ss_pred cCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 413 ~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
.+-|...|..-.-+|.+.|.+.+|++=.+.. ...|+ ...|..=..++....+++.|.+.|++.++.+|.+......
T Consensus 388 --~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 388 --DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred --CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 2446889999999999999999998866654 34454 3455555666777789999999999999999988776666
Q ss_pred HHHHHHh
Q 035659 491 LSNIYAK 497 (655)
Q Consensus 491 l~~~~~~ 497 (655)
+..++..
T Consensus 466 ~~rc~~a 472 (539)
T KOG0548|consen 466 YRRCVEA 472 (539)
T ss_pred HHHHHHH
Confidence 6666554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0001 Score=82.19 Aligned_cols=227 Identities=11% Similarity=0.149 Sum_probs=174.3
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCC---CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHH
Q 035659 279 NPD-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-GIK---LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR--DVFVW 351 (655)
Q Consensus 279 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 351 (655)
.|| ...|-.-|.-....++.+.|+++.++++.. ++. --..+|.+++++-..-|.-+...++|++..+- ....|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 354 557778888889999999999999998863 221 12457888888888889999999999998763 34678
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC---cchHHHHHHH
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDM 428 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~ 428 (655)
..|...|.+.+..++|.++|+.|.+. ..-....|...+..+.+...-+.|..++.++.+. -|. .....-.+.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHH
Confidence 99999999999999999999999875 3456778999999999999999999999998863 344 3445556677
Q ss_pred HHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCcchHHHHHHHHH-hcCCchh
Q 035659 429 LGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELE--PENHGALVLLSNIYA-KTGKWDN 503 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~-~~g~~~~ 503 (655)
-.+.|+.+.+..+|+.. ..+.-...|+.++..-.++|+.+.++.+|++++.+. |.....++-.=--|. ..|+-+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 78999999999999986 222346789999999999999999999999999987 444333333222333 3355444
Q ss_pred HHHHHH
Q 035659 504 VSELRK 509 (655)
Q Consensus 504 a~~~~~ 509 (655)
++.+-.
T Consensus 1690 vE~VKa 1695 (1710)
T KOG1070|consen 1690 VEYVKA 1695 (1710)
T ss_pred HHHHHH
Confidence 444433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.8e-06 Score=70.76 Aligned_cols=107 Identities=15% Similarity=-0.000 Sum_probs=91.1
Q ss_pred HHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 035659 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELE 481 (655)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 481 (655)
.+++... .+.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444444 23455 4566788899999999999999986 4445 57899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 482 PENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 482 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
|.++.++..++.++...|++++|.+.++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987743
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=5e-05 Score=83.10 Aligned_cols=192 Identities=10% Similarity=0.068 Sum_probs=135.9
Q ss_pred CHHHHHHHHHHHhccCCHHHH-HHHHHHHHHcCCCCchhhHHHHHHHHHhcCC----HHHHHHHHhhcCCCChhHHHHHH
Q 035659 281 DEFTFVSVLSACAQLGAMDIG-VQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN----LDKALEVFHTVKSRDVFVWSTMI 355 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~li 355 (655)
+......+=.+.+..|.-+++ .+++.++.+ ++...+.... +.++..+..... .++..+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYP-HTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhcc-ccHHHHHHHH
Confidence 333444444456677765554 666666654 2222222222 222222222221 3577888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcC
Q 035659 356 AGFAMYGCGREALDLFSRMQEAKVKPNA-VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAG 433 (655)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g 433 (655)
....+.|+.++|..+++...+ +.||. .....+..++.+.+.+++|....++... ..|+ ......+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998 57765 4556677789999999999999999875 3555 566777888899999
Q ss_pred CHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 434 LLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 434 ~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
++++|.++|++. ...|+ ..+|.++..++...|+.++|...|+++++...+-...|..
T Consensus 169 ~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 169 QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 999999999997 22344 6789999999999999999999999999987544444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.012 Score=63.70 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccC
Q 035659 453 VWGALLGACKIHENVE---LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 519 (655)
+-+.|+..|++.++.. +|+-+++..+...|.|...-..|+.+|+-.|-+..|.++++.+.-+.+..+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 3466778888887754 677788888888999999999999999999999999999998876655443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.4e-05 Score=79.73 Aligned_cols=188 Identities=19% Similarity=0.182 Sum_probs=146.8
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035659 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392 (655)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 392 (655)
++|--..-..+.+.+.+.|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||+.-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4455556667888899999999999999975 4688889999999999999999888877 57899999999888
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK-MPIVPG-ASVWGALLGACKIHENVELA 470 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~-m~~~p~-~~~~~~ll~~~~~~g~~~~a 470 (655)
.....-+++|.++++....+ .-..+.....+.++++++.+.++. +.+.|- ..+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88878888999888876542 001111122346788888888876 344443 56788888888888888888
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 471 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.+.|.....++|++...|+.++.+|.+.|+-.+|...+++..+-.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 888888888888888888888888888888888888888877655
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00023 Score=76.95 Aligned_cols=353 Identities=13% Similarity=0.065 Sum_probs=193.2
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----eeHHHHHHHHH
Q 035659 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKD-----VVSWNSMISGF 215 (655)
Q Consensus 141 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~ 215 (655)
.|..|...|....+...|.+.|..+.+.. ..|...+.++.+.|++..+++.|..+.-...+.+ ...|--..-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45566666665556666777777776654 4566677778888888888888877744333322 12333444556
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHH--HHHh
Q 035659 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVL--SACA 293 (655)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll--~~~~ 293 (655)
.+.++..+|+.-|+...... +-|...|..+..+|...|.+. .|+++|.+... +.|+.. |...- ..-+
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~------~AlKvF~kAs~---LrP~s~-y~~fk~A~~ec 641 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYS------HALKVFTKASL---LRPLSK-YGRFKEAVMEC 641 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCcee------hHHHhhhhhHh---cCcHhH-HHHHHHHHHHH
Confidence 67777788887777776543 235667888888888888877 88888887765 556533 22221 1245
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHH-------HhcCCHHHHHHHHhhcC-------C----CChhHHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY-------TKCGNLDKALEVFHTVK-------S----RDVFVWSTMI 355 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-------~~~g~~~~A~~~~~~~~-------~----~~~~~~~~li 355 (655)
..|...++...++.++... ..-....+.+...+ .-.|-..+|...|+.-. . .+...|-.+-
T Consensus 642 d~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as 720 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS 720 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence 6788888888777776531 11111122222222 22232333333333211 1 1233333332
Q ss_pred HHHH---HcC--ChH-HHHHH-HHHHHHcCCCCC--------------------HHHHHHHHHHHHc-------c-CcHH
Q 035659 356 AGFA---MYG--CGR-EALDL-FSRMQEAKVKPN--------------------AVTFTNVLCACSH-------S-GLVD 400 (655)
Q Consensus 356 ~~~~---~~g--~~~-~A~~~-~~~m~~~g~~p~--------------------~~t~~~ll~a~~~-------~-g~~~ 400 (655)
.++. +.. .+. ..+.+ +.+....+.-|+ ..+|..+...+.+ . .+..
T Consensus 721 dac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 721 DACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 2221 111 000 00111 111211111111 1222222221111 1 1223
Q ss_pred HHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
.|...+...++ +..+ ...|+.| ..+...|.+.-|..-|-+- ..+....+|..+...|.+..+++.|..+|.++
T Consensus 801 ~Ai~c~KkaV~---L~ann~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 801 TAIRCCKKAVS---LCANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHH---HhhccHHHHHHH-HHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhh
Confidence 44444444442 2233 2333333 3334445555555544332 22334678888888888899999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 478 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
..++|.|...|...+.+-...|+.-++..+|..
T Consensus 877 qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 877 QSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999998888887777888888787777765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0001 Score=70.79 Aligned_cols=182 Identities=13% Similarity=0.077 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---Chh---
Q 035659 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN---CYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVF--- 349 (655)
Q Consensus 279 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~--- 349 (655)
......+..+...+...|+++.|...++++.+.. +.+ ...+..+..+|.+.|++++|...|+.+.+. +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677888888999999999999999998854 222 246778899999999999999999998642 222
Q ss_pred HHHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcc
Q 035659 350 VWSTMIAGFAMY--------GCGREALDLFSRMQEAKVKPNAV-TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420 (655)
Q Consensus 350 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 420 (655)
.+..+...+.+. |+.++|.+.|+++... .|+.. ....+... . .... .. . .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~---~~~~------~~-~--------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-D---YLRN------RL-A--------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-H---HHHH------HH-H--------H
Confidence 455555666654 7789999999999885 45543 22211111 0 0000 00 0 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM----PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
....+...|.+.|++++|...+++. |-.| ....|..+..++...|++++|...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1235667788999999999988886 2223 246888999999999999999998888776554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.7e-05 Score=66.04 Aligned_cols=119 Identities=10% Similarity=0.055 Sum_probs=97.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
....-.+...+...|++++|..+|+-. .+.| +..-|..|...|...|++++|+..+.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445566677899999999999887 3344 46788999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 035659 497 KTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560 (655)
Q Consensus 497 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~ 560 (655)
..|+.+.|.+.|+...... ..+|+..++.+++...++.+.+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999887642 1245666777777777666653
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.2e-06 Score=53.48 Aligned_cols=35 Identities=37% Similarity=0.759 Sum_probs=33.0
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 240 (655)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00011 Score=74.95 Aligned_cols=245 Identities=15% Similarity=0.087 Sum_probs=178.7
Q ss_pred HHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 035659 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328 (655)
Q Consensus 249 ~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 328 (655)
-+.+.|++. +|.-.|+...+.. +-+...|.-|...-...++-..|...+.+..+.. +-+..+.-+|.-.|.
T Consensus 294 ~lm~nG~L~------~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 294 NLMKNGDLS------EAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYT 364 (579)
T ss_pred HHHhcCCch------HHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHh
Confidence 345667766 8888898887764 5567788888888888889999999999999875 556788888999999
Q ss_pred hcCCHHHHHHHHhhcCC-CChhHHHHHH---------HHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccC
Q 035659 329 KCGNLDKALEVFHTVKS-RDVFVWSTMI---------AGFAMYGCGREALDLFSRMQ-EAKVKPNAVTFTNVLCACSHSG 397 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~-~~~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g 397 (655)
..|.-..|.+.|+.=.. .-...|...- ..+..........++|-++. ..+.++|......|--.|.-.|
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 99999999988876321 0000000000 11112222345556666654 4453456666666666688899
Q ss_pred cHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 035659 398 LVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYAC 474 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 474 (655)
.+++|...|+.+.. ++|+ ...||-|...++...+.++|+..|++. .++|+ +.++..|.-+|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999999984 5675 678999999999999999999999986 78898 568899999999999999999999
Q ss_pred HHHhccCCCC----------cchHHHHHHHHHhcCCchhHH
Q 035659 475 SHLLELEPEN----------HGALVLLSNIYAKTGKWDNVS 505 (655)
Q Consensus 475 ~~~~~~~p~~----------~~~~~~l~~~~~~~g~~~~a~ 505 (655)
-.++.+.+.+ ...|..|=.++.-.++.|.+.
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 9998875431 135555555555556555443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00036 Score=77.29 Aligned_cols=166 Identities=13% Similarity=0.062 Sum_probs=100.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 035659 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGK--KD-VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249 (655)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (655)
+...+..|+..|...+++++|.++.+...+ |+ ...|-.+...+.+.++..++..+ .+ +..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhh
Confidence 345677777777777778877777765443 32 33444444456666665555444 22 222
Q ss_pred HhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 035659 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329 (655)
Q Consensus 250 ~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 329 (655)
.....++. -...+...|.. ..-+...+..+..+|.+.|+.+++.++++++++.. +-|+.+.|.+...|+.
T Consensus 93 ~~~~~~~~------~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 93 FSQNLKWA------IVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred cccccchh------HHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 22222221 22222233332 23344567777777778888888888888887776 5667777777777777
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 035659 330 CGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377 (655)
Q Consensus 330 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (655)
. ++++|++++.+. +..|...+++.++.++|.++...
T Consensus 163 ~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 163 E-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred h-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence 7 777777776553 23366666777777777777763
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0018 Score=59.90 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=66.3
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 035659 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383 (655)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 383 (655)
+.+.+.......+......-...|+..|++++|.+..+....-+....+ ...+.+..+.+-|.+.+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 3344444333333333333344567777777777777663322222222 33445556667777777777652 245
Q ss_pred HHHHHHHHHHHc----cCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 035659 384 VTFTNVLCACSH----SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 384 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 444 (655)
.|.+-|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+....+....|++++|..+++.
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 555555555433 2334555555555543 2334444444444444444444444444444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.013 Score=62.42 Aligned_cols=204 Identities=10% Similarity=0.069 Sum_probs=118.0
Q ss_pred CChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC-----------CCcchHHHHHHH-HHhCCCcHHHHHHHHHhhhcCCC
Q 035659 68 FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ-----------PNLYTWNTLIRA-YSSSAEPIQSFMIFLQLVYNSPY 135 (655)
Q Consensus 68 ~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~-----------~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~ 135 (655)
-+..+|..+.+||.+.. +++-|.-.+-.|.+ .|..--.+-..+ -...|..++|..+|++- ++
T Consensus 755 kS~~vW~nmA~McVkT~--RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~c-kR--- 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTR--RLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQC-KR--- 828 (1416)
T ss_pred hhhHHHHHHHHHhhhhc--cccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHH-HH---
Confidence 35668999999999988 88888777766652 111111112222 24568899999999988 43
Q ss_pred CCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------------
Q 035659 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK------------- 202 (655)
Q Consensus 136 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------------- 202 (655)
|..|=+.|...|.|++|.++-+.--+..+. .+|-....-+-..++.+.|++.|++...
T Consensus 829 ------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 829 ------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred ------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 445556677789999999886643332222 2444455555567788888888876542
Q ss_pred ----------CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHH
Q 035659 203 ----------KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHEL 272 (655)
Q Consensus 203 ----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m 272 (655)
+|...|.-....+-..|+.+.|+.+|....+ |-++++..+-.|+.+ +|-.+-++
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~------kAa~iA~e- 963 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTD------KAARIAEE- 963 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCch------HHHHHHHh-
Confidence 2333444444444455666666666655443 344444445555544 44444322
Q ss_pred HHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 035659 273 QLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKM 308 (655)
Q Consensus 273 ~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 308 (655)
.| |....-.+...|-..|++.+|..+|.++
T Consensus 964 --sg----d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 964 --SG----DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred --cc----cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11 3334444555555555555555555444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00021 Score=65.98 Aligned_cols=154 Identities=12% Similarity=0.090 Sum_probs=109.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 035659 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403 (655)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 403 (655)
+-.|.+.|+++.+....+.+..+. ..|...++.++++..+++..... +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777766654443322211 01112456677777777777643 446777888888888999999999
Q ss_pred HHHHHcchhcCccC-CcchHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 404 MFFNQMEPVYGVVP-GVKHYTCMVDM-LGRAGL--LDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 404 ~~~~~~~~~~~~~p-~~~~y~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
..|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99988874 345 46677777776 467777 58999999886 4445 4678888888999999999999999999
Q ss_pred hccCCCCcchHH
Q 035659 478 LELEPENHGALV 489 (655)
Q Consensus 478 ~~~~p~~~~~~~ 489 (655)
+++.|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987765443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.2e-05 Score=69.01 Aligned_cols=127 Identities=17% Similarity=0.102 Sum_probs=83.1
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhc
Q 035659 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIH 464 (655)
Q Consensus 387 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~ 464 (655)
..+-.++...|+-+.+..+...... ....|......++....+.|++.+|+..+++. +-.+|...|+.+.-+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 4444556666666666666665432 22233344455666777777777777777775 3345667777777777777
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 465 ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 465 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
|+.++|...+.+++++.|.++..++.|+..|.-.|+.+.|..++......+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 777777777777777777777777777777777777777777776655543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00034 Score=64.62 Aligned_cols=151 Identities=16% Similarity=0.095 Sum_probs=68.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 035659 322 SLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398 (655)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 398 (655)
.+-..|.-.|+-+.+..+...... .|....+..+....+.|++.+|+..|++.... -++|...|+.+.-+|.+.|+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccC
Confidence 334444444544444444444221 23334444455555555555555555555442 23344455555555555555
Q ss_pred HHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 035659 399 VDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKMP--IVPGASVWGALLGACKIHENVELAEYACS 475 (655)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 475 (655)
.++|..-|.+..+. .| ++..++.|.-.|.-.|+++.|..++...- -..|..+-..|.-.....|++++|+.+..
T Consensus 150 ~~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 55555555554432 22 23344444444444555555555544431 11133444444444444555555544443
Q ss_pred H
Q 035659 476 H 476 (655)
Q Consensus 476 ~ 476 (655)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0018 Score=64.36 Aligned_cols=212 Identities=15% Similarity=0.121 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHCCCCCCCH-HHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH--HHHHHH
Q 035659 264 EALSIFHELQLSKNVNPDE-FTFVSVLSACAQLG-AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL--DKALEV 339 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~-~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~ 339 (655)
+|+.+..++.. +.|+. .+|+.--.++...| +++++...++.+.+.+ +.+..+|+.....+.+.|+. +++..+
T Consensus 55 rAL~lt~~aI~---lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 55 RALDLTADVIR---LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred HHHHHHHHHHH---HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 45555555444 22322 23333333333444 3455555555555543 23334444444344444432 444555
Q ss_pred HhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---Cc----HHHHHHHHHHc
Q 035659 340 FHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS---GL----VDEGRMFFNQM 409 (655)
Q Consensus 340 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~~~a~~~~~~~ 409 (655)
++.+.+ +|..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |. .++..++...+
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 544432 35556666666666666666777777766665432 334444433333332 11 23455555444
Q ss_pred chhcCccCCcchHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcC------------------
Q 035659 410 EPVYGVVPGVKHYTCMVDMLGRA----GLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHE------------------ 465 (655)
Q Consensus 410 ~~~~~~~p~~~~y~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g------------------ 465 (655)
+.. ..-|...|+.+..+|... ++..+|.+++.+. ...| +......|+..|....
T Consensus 210 I~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 210 ILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 431 122355666666666552 3344566665554 2223 3445555666655421
Q ss_pred CHHHHHHHHHHHhccCC
Q 035659 466 NVELAEYACSHLLELEP 482 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p 482 (655)
..++|.++++.+.+.+|
T Consensus 288 ~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 288 DSTLAQAVCSELEVADP 304 (320)
T ss_pred cHHHHHHHHHHHHhhCc
Confidence 23567777777655555
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0008 Score=73.90 Aligned_cols=162 Identities=12% Similarity=0.077 Sum_probs=124.3
Q ss_pred HhccCCHHHHHHHHHHHHH--cCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHH
Q 035659 292 CAQLGAMDIGVQIHAKMKK--QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--R-DVFVWSTMIAGFAMYGCGRE 366 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 366 (655)
..+.+.+..+.+-+-++.. ...+.++..+-.|.....+.|.+++|+.+++...+ | +...+..+...+.+.+++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~ee 138 (694)
T PRK15179 59 LERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEA 138 (694)
T ss_pred HHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHH
Confidence 3444555544444444433 33566788999999999999999999999999875 3 56678888999999999999
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHh
Q 035659 367 ALDLFSRMQEAKVKPNA-VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 367 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~ 444 (655)
|+..+++.... .|+. .....+..++.+.|.+++|..+|+++... .|+ ...+..+...+...|+.++|...|++
T Consensus 139 A~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 139 GRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999984 5654 44556666789999999999999999862 343 67888999999999999999999998
Q ss_pred C--CCCCChhHHHHHH
Q 035659 445 M--PIVPGASVWGALL 458 (655)
Q Consensus 445 m--~~~p~~~~~~~ll 458 (655)
. ...|...-|+.++
T Consensus 214 a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 214 GLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHhhCcchHHHHHHH
Confidence 6 2234445555444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.5e-06 Score=51.70 Aligned_cols=35 Identities=34% Similarity=0.611 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 383 (655)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00016 Score=73.22 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=103.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACK 462 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 462 (655)
-..+++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3456677778889999999999999864 354 5566888888889999999999886 2233 5566666667789
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
..++++.|+.+++++.+..|.+..+|..|+.+|...|++++|...++.+..
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999999999999999999999999999999999999998764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.018 Score=57.15 Aligned_cols=123 Identities=18% Similarity=0.173 Sum_probs=90.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL 398 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 398 (655)
+.+..+.-+...|+...|.++-.+..-+|...|-..+.+|+..++|++-.++... +-.++-|...+.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4444556667788889999998888888888899999999999999877765432 1234778888888888999
Q ss_pred HHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 035659 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGAC 461 (655)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 461 (655)
..+|..+...+ .+..-+.+|.++|++.+|.+.--+.+ |...+..+...|
T Consensus 253 ~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 253 KKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 98888887763 22466788889999998887766553 555555444444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=50.51 Aligned_cols=34 Identities=29% Similarity=0.577 Sum_probs=32.0
Q ss_pred eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 035659 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKP 238 (655)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 238 (655)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999987
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.021 Score=58.32 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=54.6
Q ss_pred CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHH
Q 035659 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180 (655)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 180 (655)
-|+.+|+.||+-+-.. ..+++.+.+++++ . -.+-....|..-|..-.+..+++..+.+|.+.+..-+ ++..|...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~-~-~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLV-N-VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHh-c-cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 3788899999877655 8888999999882 2 1233455667777777788888888888888776643 35555555
Q ss_pred HH
Q 035659 181 IH 182 (655)
Q Consensus 181 i~ 182 (655)
++
T Consensus 93 l~ 94 (656)
T KOG1914|consen 93 LS 94 (656)
T ss_pred HH
Confidence 54
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.5e-05 Score=65.04 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=74.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
.....+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44556667777788888888888775 3333 466777778888888888888888888888888888888888888888
Q ss_pred cCCchhHHHHHHHHHhC
Q 035659 498 TGKWDNVSELRKHMRVS 514 (655)
Q Consensus 498 ~g~~~~a~~~~~~m~~~ 514 (655)
.|++++|.+.++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888777664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00059 Score=68.58 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=49.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNV-LCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLL 435 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~ 435 (655)
+...|+.++|+..++.+... .||...|..+ ...+...++.++|.+.++.+.. ..|+ ....-.+..+|.+.|+.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCCh
Confidence 33445555555555554442 3333333222 2234455555555555555542 2333 33334444455555555
Q ss_pred HHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHH
Q 035659 436 DEAVEFIEKM--PIVPGASVWGALLGACKIHENVELA 470 (655)
Q Consensus 436 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a 470 (655)
.+|+.+++.. ..+.|+..|..|..+|...|+..++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 5555555443 2222344555555555555554444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0016 Score=65.51 Aligned_cols=116 Identities=21% Similarity=0.149 Sum_probs=72.6
Q ss_pred HHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVEL 469 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 469 (655)
....|.+++|+..++.+... .| |+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34456667777777666542 33 3444455566667777777777776665 34455 4556666666777777777
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 470 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
|+..++.....+|+|+..|..|+.+|...|+..++...+.++
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 777777777667777777777666666666665555555444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.6e-05 Score=48.83 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (655)
.+|+++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0004 Score=70.46 Aligned_cols=126 Identities=11% Similarity=0.149 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 399 (655)
..+|+..+...++++.|..+|+++.+.+...+..++..+...++-.+|++++++..... +-|...+..-...|.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34455556667888888888888888777777778888888888888888888888642 22445555555567888889
Q ss_pred HHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 035659 400 DEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP 449 (655)
Q Consensus 400 ~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p 449 (655)
+.|+.+.+++.+ ..|+ ..+|..|...|.+.|++++|+..++.+|.-+
T Consensus 251 ~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 251 ELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999988874 4565 5688889999999999999999998887543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0034 Score=69.87 Aligned_cols=282 Identities=8% Similarity=-0.020 Sum_probs=181.5
Q ss_pred CCCC-CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHH
Q 035659 134 PYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMI 212 (655)
Q Consensus 134 ~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 212 (655)
++.| +...+..|+..+...+++++|.++.+..++.. +.....|-.+...|...++.+++..+ .++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l 90 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLI 90 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence 3444 45567888888889999999999999777663 33344444444477777776666544 344
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 035659 213 SGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292 (655)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~ 292 (655)
..+....++.-+..+...|.+. .-+...+-.+..+|.+.|+.+ +|...++++.+.. +-|....|.+.-.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~------ka~~~yer~L~~D--~~n~~aLNn~AY~~ 160 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENK------KLKGVWERLVKAD--RDNPEIVKKLATSY 160 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChH------HHHHHHHHHHhcC--cccHHHHHHHHHHH
Confidence 4444444553344444445443 223446778888899999976 9999999998864 55677888888888
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 035659 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFS 372 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (655)
+.. ++++|++++.+++.. |...+++..+.+++.++..-++. +++.-..+.+
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-------------d~d~f~~i~~ 211 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-------------DFDFFLRIER 211 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-------------cchHHHHHHH
Confidence 888 999999999888764 66677888999988888765443 2233334444
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhc-CCHHHHHHHHHhCCCCC
Q 035659 373 RMQEA-KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRA-GLLDEAVEFIEKMPIVP 449 (655)
Q Consensus 373 ~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~-g~~~~A~~~~~~m~~~p 449 (655)
++..+ |..--..++.-+-..|...++++++..+++.+.+ ..| |.....-+++.|... +......+.++.-++
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l-- 286 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDI-- 286 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHHHHccCcchHHHHHHHhcc--
Confidence 44433 3333445566666778888899999999999885 334 344455555555421 111112222222122
Q ss_pred ChhHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCc
Q 035659 450 GASVWGALLGACKIH-ENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 485 (655)
... .++..++.-|++.+..++.+.
T Consensus 287 ------------~~~~~~~~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 287 ------------GNNRKPVKDCIADFEKNIVFDTGNF 311 (906)
T ss_pred ------------ccCCccHHHHHHHHHHHeeecCCCE
Confidence 222 456778888888887776654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0031 Score=57.99 Aligned_cols=168 Identities=18% Similarity=0.142 Sum_probs=117.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 035659 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMI---AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG 397 (655)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 397 (655)
..++-+...+|+.+.|..+++.+..+-..++.... .-+-..|++++|+++++...+.. +.|.+++..-+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 33444445567777777777766543222222221 12345788899999999988875 446777777676777778
Q ss_pred cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHh---cCCHHHHHH
Q 035659 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKI---HENVELAEY 472 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~---~g~~~~a~~ 472 (655)
+--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -+.|- ...+..+...+.. ..+.+.+.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77788888887776 45678889999999999999999999999997 33443 4455555555433 347789999
Q ss_pred HHHHHhccCCCCcchHHHH
Q 035659 473 ACSHLLELEPENHGALVLL 491 (655)
Q Consensus 473 ~~~~~~~~~p~~~~~~~~l 491 (655)
.+.+.+++.|.+...+.-+
T Consensus 213 yy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHhChHhHHHHHHH
Confidence 9999999999665554443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.7e-05 Score=47.52 Aligned_cols=31 Identities=42% Similarity=0.807 Sum_probs=27.2
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEMENV 236 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (655)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00051 Score=59.33 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=84.9
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 035659 370 LFSRMQEAKVKPN-AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI 447 (655)
Q Consensus 370 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~ 447 (655)
.|++... ..|+ ......+...+...|++++|...|+.+... ...+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555 3443 344555666778889999999998888753 2335677888888888999999999888876 33
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 448 VP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 448 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
.| +...+..+...+...|+.+.|...++++++.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 4677888888899999999999999999999987754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0003 Score=55.89 Aligned_cols=93 Identities=27% Similarity=0.280 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 498 (655)
.+..+...+...|++++|..++++. ...|+ ...+..+...+...++++.|...++++.+..|.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3455667778888888888888775 33343 466777788888889999999999999988888888888888999999
Q ss_pred CCchhHHHHHHHHHh
Q 035659 499 GKWDNVSELRKHMRV 513 (655)
Q Consensus 499 g~~~~a~~~~~~m~~ 513 (655)
|++++|...++...+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999888877654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.2e-05 Score=59.27 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHhC-CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 432 AGLLDEAVEFIEKM-PIVP---GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 432 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46667777777665 1122 345566677777777777777777777 666666666666778888888888888877
Q ss_pred HHH
Q 035659 508 RKH 510 (655)
Q Consensus 508 ~~~ 510 (655)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.006 Score=56.64 Aligned_cols=141 Identities=14% Similarity=0.031 Sum_probs=95.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHH----
Q 035659 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG---- 430 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~---- 430 (655)
...|...|++++|++...... +-.....=...+.+..+++-|.+.++.|.+- -+..+.+.|..++.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhc
Confidence 345777788888887776521 1122222223455667788888888887642 23344554555444
Q ss_pred hcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHH
Q 035659 431 RAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505 (655)
Q Consensus 431 ~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 505 (655)
-.+.+.+|.-+|++| +..|+..+.+-...++...|++++|+.+++.++..+++++.+...++-.-...|+-.++.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 345688888888888 356777788888888888888888888888888888888888777777777777766553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00013 Score=54.53 Aligned_cols=64 Identities=23% Similarity=0.207 Sum_probs=58.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-CchhHHHHHHHHHh
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG-KWDNVSELRKHMRV 513 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 513 (655)
++.+|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999887765
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0027 Score=55.57 Aligned_cols=115 Identities=16% Similarity=0.071 Sum_probs=47.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC--cchHHHHHHHHHhcCCHH
Q 035659 361 YGCGREALDLFSRMQEAKVKPN--AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG--VKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~ 436 (655)
.++...+...++.+......-. ......+...+...|++++|...|+.+... ...|+ ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4455555555555554321110 111222233445555555555555555543 11111 112223344445555555
Q ss_pred HHHHHHHhCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 035659 437 EAVEFIEKMPI-VPGASVWGALLGACKIHENVELAEYACSH 476 (655)
Q Consensus 437 ~A~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 476 (655)
+|+..++..+. ......+......+...|+.++|...|++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555544311 11122333333444444444444444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0013 Score=57.47 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=90.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCh----hHHHHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGA----SVWGALL 458 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll 458 (655)
.|..++... ..++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.. ...||. .....|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 47888889888999887532221 1233444567888999999999999987 222443 3455677
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
..+...|++++|+..++.. ...+..+..+..++++|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8889999999999999773 333445667888999999999999999998753
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.3e-05 Score=45.54 Aligned_cols=31 Identities=29% Similarity=0.621 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 379 (655)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.001 Score=55.89 Aligned_cols=99 Identities=10% Similarity=0.019 Sum_probs=49.7
Q ss_pred HHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHH
Q 035659 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGAC 461 (655)
Q Consensus 388 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~ 461 (655)
.+...+...|++++|...|..+.+.+.-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 344444555555555555555543211100 0223444555555555555555555554 11222 33455555556
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 462 KIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
...|+.++|...++++++..|++..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00081 Score=56.47 Aligned_cols=96 Identities=15% Similarity=0.075 Sum_probs=81.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHH
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPEN---HGALVLL 491 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 491 (655)
.++..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...++.+++..|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677888899999999999999887 22333 3466778899999999999999999999988775 4578889
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCC
Q 035659 492 SNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 492 ~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
+.++.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999988864
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.14 Score=52.49 Aligned_cols=436 Identities=12% Similarity=0.090 Sum_probs=256.2
Q ss_pred CCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC--C-CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHH
Q 035659 67 FFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ--P-NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFP 143 (655)
Q Consensus 67 ~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~ 143 (655)
+-|..+|+.||.-+... .++++++.++++.. | ....|..-|..-....+++....+|.+. ...- .+..-|.
T Consensus 17 P~di~sw~~lire~qt~---~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RC-Lvkv--LnlDLW~ 90 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ---PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRC-LVKV--LNLDLWK 90 (656)
T ss_pred CccHHHHHHHHHHHccC---CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHH--hhHhHHH
Confidence 34888999999976544 69999999999874 3 4457999999999999999999999998 3332 2444555
Q ss_pred HHHHHHHcc-CCchHHH----HHHHHH-HHhCCCCC-hhHHHHHHHHH---------HhcCCHHHHHHHHhhcCC-C---
Q 035659 144 FVIKAAARL-VQFRVGQ----AIHGMV-IKSSFEDD-LFISNSLIHFY---------AICGDLAMAYCVFVMIGK-K--- 203 (655)
Q Consensus 144 ~ll~~~~~~-~~~~~a~----~~~~~~-~~~g~~~~-~~~~~~li~~~---------~~~g~~~~A~~~f~~~~~-~--- 203 (655)
.-|.-..+. ++....+ +.++.. .+.|+.+- -..|+..+..+ ....+++..+++++++.. |
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 555543332 3333322 233333 34554433 33466666543 344567778888888764 2
Q ss_pred ------CeeHHHHHHHHH-------HhCCChhHHHHHHHHHHH--CCCCCCHhh---------------HHHHHHHHhcc
Q 035659 204 ------DVVSWNSMISGF-------VQGGFFEKAIELYREMEM--ENVKPDEVT---------------MVAVLSACAKK 253 (655)
Q Consensus 204 ------~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~~~~~~ 253 (655)
|-..|..=|... -+...+..|.+++++... .|...+..+ |-.+|.-=...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 222332222211 123456778888887753 243322222 33333221111
Q ss_pred Ccc-ccCCC-hHHHHHHHHHHHHCCCCCCCHHHH-HHHH----HHHhccCC-------HHHHHHHHHHHHHcCCCCchhh
Q 035659 254 RDL-EFGRW-PNEALSIFHELQLSKNVNPDEFTF-VSVL----SACAQLGA-------MDIGVQIHAKMKKQGIKLNCYL 319 (655)
Q Consensus 254 ~~~-~~~~~-~~~A~~l~~~m~~~~~~~p~~~t~-~~ll----~~~~~~g~-------~~~a~~~~~~~~~~g~~~~~~~ 319 (655)
+.- ..+.. .....-.+++....-+..|+.... ...+ +.+...|+ .+++..+++..+..-...+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11110 112222333322221244443211 1111 12333343 3455666666655433334445
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 035659 320 TTSLIDMYTKC---GNLDKALEVFHTVKS----RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLC 391 (655)
Q Consensus 320 ~~~li~~~~~~---g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 391 (655)
|.++.+.--.. ...+.....++++.. .-..+|-..+..-.+..-...|..+|.+..+.+..+ +.....+++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 54444322111 124444455555442 223467777887778888899999999999988888 5555666665
Q ss_pred HHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--hhHHHHHHHHHHhcCC
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM---PIVPG--ASVWGALLGACKIHEN 466 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~ 466 (655)
-+ .+++.+-|.++|+.-.+.+|-. +.--...++-+...++-..|..+|++. .+.|| ..+|..+|.--..-|+
T Consensus 411 y~-cskD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 411 YY-CSKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HH-hcCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 44 4689999999999887765433 334567788889999999999999987 23333 5799999999999999
Q ss_pred HHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 467 VELAEYACSHLLELEPEN----HGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 467 ~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
...+.++-++....-|.+ ...-..+...|.-.+.+..-..-++.|
T Consensus 488 L~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999999998887765522 122334556666666665544444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00032 Score=51.65 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+...+...|++++|+..++++++..|.+...+..++.++...|++++|...++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456777888888888888888888888888888888888888888888888877653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0016 Score=59.01 Aligned_cols=82 Identities=21% Similarity=0.114 Sum_probs=61.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
...|..+...|...|++++|...|++. ...|+ ...|..+...+...|++++|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566666677777777777777765 22222 3577788888888899999999999999988888888888888
Q ss_pred HHHhcCC
Q 035659 494 IYAKTGK 500 (655)
Q Consensus 494 ~~~~~g~ 500 (655)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.007 Score=64.51 Aligned_cols=139 Identities=14% Similarity=0.054 Sum_probs=62.9
Q ss_pred CCChhHHHHHHHHHHHcC-----ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc--------CcHHHHHHHHHHcc
Q 035659 345 SRDVFVWSTMIAGFAMYG-----CGREALDLFSRMQEAKVKPNA-VTFTNVLCACSHS--------GLVDEGRMFFNQME 410 (655)
Q Consensus 345 ~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 410 (655)
..|...|...+.+..... ...+|..+|++..+ ..||. ..+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 346667777776644322 25678888888887 45653 3333322222111 11122222222211
Q ss_pred hhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 411 ~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.......+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 11011112233444433334445555555555443 3344444444445555555555555555555555555443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=67.27 Aligned_cols=107 Identities=18% Similarity=0.071 Sum_probs=87.6
Q ss_pred HHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcC
Q 035659 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHE 465 (655)
Q Consensus 389 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 465 (655)
-...+...|++++|+.+|.++.+. .| +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 345567789999999999999853 44 4667888889999999999999999887 4455 4678888889999999
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 035659 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKT 498 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 498 (655)
++++|+..++++++++|.+......+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988777765554433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0026 Score=50.90 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=64.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHhccCccccC--CChHHHHHHHHHHHHCCCCCCCHHHH
Q 035659 209 NSMISGFVQGGFFEKAIELYREMEMENV-KPDEVTMVAVLSACAKKRDLEFG--RWPNEALSIFHELQLSKNVNPDEFTF 285 (655)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~~--~~~~~A~~l~~~m~~~~~~~p~~~t~ 285 (655)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+...-... ...-+.+.+|+.|...+ ++|+..||
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~-lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNK-LKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhc-cCCcHHHH
Confidence 4556667777999999999999999999 99999999999988875432100 00336677778887777 88888888
Q ss_pred HHHHHHHhc
Q 035659 286 VSVLSACAQ 294 (655)
Q Consensus 286 ~~ll~~~~~ 294 (655)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888776643
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0017 Score=58.60 Aligned_cols=93 Identities=13% Similarity=-0.067 Sum_probs=74.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
...|..+...+...|++++|+..|++. .+.|+ ..+|..+...+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 456677777788889999999988876 23332 3578889999999999999999999999999988888888888
Q ss_pred HHH-------hcCCchhHHHHHHHH
Q 035659 494 IYA-------KTGKWDNVSELRKHM 511 (655)
Q Consensus 494 ~~~-------~~g~~~~a~~~~~~m 511 (655)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 778888776666544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.22 Score=50.13 Aligned_cols=431 Identities=11% Similarity=0.073 Sum_probs=228.5
Q ss_pred HHHHHHHHHhCC----CC-ChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCC-cchHHHHHHHH--HhCCCcHHHHHHH
Q 035659 55 KQIHTQMLRTGL----FF-DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPN-LYTWNTLIRAY--SSSAEPIQSFMIF 126 (655)
Q Consensus 55 ~~~~~~~~~~g~----~~-~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~~~ 126 (655)
..++..+.+.-- .. .....+.++++|-... ++..........+.. -..|-.+..++ -+.+.+.+|++.|
T Consensus 26 EkifskI~~e~~~~~f~lkeEvl~grilnAffl~n---ld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~l 102 (549)
T PF07079_consen 26 EKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN---LDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQAL 102 (549)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh---HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 556666554421 11 1345677888877543 666655555544322 23355555543 3568888999888
Q ss_pred HHhhhcC--CCCC---C---------cchHHHHHHHHHccCCchHHHHHHHHHHHhCC----CCChhHHHHHHHHHHhcC
Q 035659 127 LQLVYNS--PYFP---N---------EFTFPFVIKAAARLVQFRVGQAIHGMVIKSSF----EDDLFISNSLIHFYAICG 188 (655)
Q Consensus 127 ~~m~~~~--~~~p---d---------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g 188 (655)
... ... +..| | -.-=+.....+...|.+.+|+.+++.++..=+ .-+..+||.++-++++.=
T Consensus 103 s~w-~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY 181 (549)
T PF07079_consen 103 SVW-KEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY 181 (549)
T ss_pred HHH-HhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH
Confidence 776 332 2222 1 11123445667788999999999888876544 378888888887777542
Q ss_pred CHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHH
Q 035659 189 DLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSI 268 (655)
Q Consensus 189 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l 268 (655)
-++ +-+.+...=..-|.-||..|.+.=..-++ -.=..+.|....+..++....-...-. ..--+.+
T Consensus 182 fLE----l~e~~s~dl~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~----l~~~mq~ 247 (549)
T PF07079_consen 182 FLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKER----LPPLMQI 247 (549)
T ss_pred HHH----HHHhcccccChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhh----ccHHHHH
Confidence 211 11222222334566666666553221111 111112333333334443333222110 0012223
Q ss_pred HHHHHHCCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC----chhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 035659 269 FHELQLSKNVNPDEF-TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL----NCYLTTSLIDMYTKCGNLDKALEVFHTV 343 (655)
Q Consensus 269 ~~~m~~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~ 343 (655)
+......- +.|+.. ....+...+.+ +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+.-+
T Consensus 248 l~~We~~y-v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 248 LENWENFY-VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHhhc-cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333 666633 33444444444 5555555555444332111 1345666777777888888887777655
Q ss_pred CC--CChh-------HHHHHHHHHH----HcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHH---HHHccCc-HHHHHHH
Q 035659 344 KS--RDVF-------VWSTMIAGFA----MYGCGREALDLFSRMQEAKVKPNAVT-FTNVLC---ACSHSGL-VDEGRMF 405 (655)
Q Consensus 344 ~~--~~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~---a~~~~g~-~~~a~~~ 405 (655)
.. |+.. +-..+-+..+ ..-+...-+.+++......+ |..- ...++. -+-+.|. -++|..+
T Consensus 325 ~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnL 402 (549)
T PF07079_consen 325 KILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNL 402 (549)
T ss_pred HhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 42 2211 1111222222 12233344556666655432 3222 122222 2444554 7778888
Q ss_pred HHHcchhcCccCC-cchHHHHH----HHHHhc---CCH---HHHHHHHHhCCCCC----ChhHHHHHHHH--HHhcCCHH
Q 035659 406 FNQMEPVYGVVPG-VKHYTCMV----DMLGRA---GLL---DEAVEFIEKMPIVP----GASVWGALLGA--CKIHENVE 468 (655)
Q Consensus 406 ~~~~~~~~~~~p~-~~~y~~li----~~~~~~---g~~---~~A~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~ 468 (655)
++.+.+ +.+. ...-|.+. ..|..+ ..+ -+-..++++.++.| +...-|.|..| +..+|++.
T Consensus 403 Lk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 403 LKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 887764 2332 22222211 122211 111 12233445555544 34456666666 56889999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 469 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
++.-.-.-+.+..| ++.+|..++-......++++|..++..+.
T Consensus 480 kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 480 KCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999999999999 88999999999999999999999997653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.002 Score=60.89 Aligned_cols=101 Identities=21% Similarity=0.141 Sum_probs=73.1
Q ss_pred HHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVEL 469 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 469 (655)
..+.+++++|...|...++ +.| |...|..=..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4556778888888887773 455 3555666677788888888887766654 55555 4688888888999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 470 AEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 470 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
|++.|+++++++|+|......|-.+--
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 999999999999988755554444433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.021 Score=52.70 Aligned_cols=160 Identities=12% Similarity=0.116 Sum_probs=122.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHH
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV-LCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 429 (655)
|-.++-+....|+.+.|...++++.+.- |...-...+ ..-+...|.+++|.++++.+.++ -+.|..+|---+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 3344556667889999999999998863 443322222 12256679999999999999875 244567777777777
Q ss_pred HhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc---hhH
Q 035659 430 GRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW---DNV 504 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~---~~a 504 (655)
-..|+--+|++-+.+. .+..|...|.-+...|...|+++.|.-.+++++-..|-++..+..++..+.-.|.. +-+
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7888888888777664 45569999999999999999999999999999999999999999999998776654 446
Q ss_pred HHHHHHHHhC
Q 035659 505 SELRKHMRVS 514 (655)
Q Consensus 505 ~~~~~~m~~~ 514 (655)
.+.+.+..+.
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 6666655553
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0062 Score=55.05 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHH
Q 035659 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN--AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYT 423 (655)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~ 423 (655)
....+..+...+...|++++|...|++.......++ ...+..+...+.+.|++++|...+.+..+. .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 345667777777778888888888888776433332 345666667777788888888887777642 33 244555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc
Q 035659 424 CMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501 (655)
Q Consensus 424 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 501 (655)
.+..+|...|+...+..-++.. ...+++|.++++++++.+|++ |..+...+...|+.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 5666666666655544332221 122678889999999998876 55566666655543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0029 Score=64.46 Aligned_cols=104 Identities=19% Similarity=0.126 Sum_probs=82.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhc
Q 035659 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRA 432 (655)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~ 432 (655)
-...+...|++++|+++|++.++.. +-+...|..+..++...|++++|+..++.+.+ +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3455678899999999999999853 23566777888889999999999999999985 345 467788899999999
Q ss_pred CCHHHHHHHHHhC-CCCCChhHHHHHHHHH
Q 035659 433 GLLDEAVEFIEKM-PIVPGASVWGALLGAC 461 (655)
Q Consensus 433 g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 461 (655)
|++++|+..|++. .+.|+......++.-|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999886 5566655554444333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0028 Score=50.07 Aligned_cols=61 Identities=30% Similarity=0.241 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
+..+...+...|++++|.+.+++. ...| +..++..+...+...|+++.|...+.++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 334444444445555555544442 1112 223455555555555666666666655555444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0097 Score=58.44 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA-CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 357777777778778888888888887542 2234445444443 444677788999999998754 455678889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 428 MLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
.+.+.|+.+.|..+|++. ..-|. ..+|...+.--.+.|+.+...++.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999986 22233 3599999999999999999999999999988764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.047 Score=47.93 Aligned_cols=133 Identities=12% Similarity=0.040 Sum_probs=103.0
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---hhHH
Q 035659 379 VKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG---ASVW 454 (655)
Q Consensus 379 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~ 454 (655)
..|+...-..|..+....|+..+|...|++...- -+.-|....-.+.++....+++.+|...++++ ...|+ +...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 5677777778888999999999999999998762 34456777788888888999999999999886 22222 3334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 455 GALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 455 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
-.+...+...|.++.|+..|+.++.--| ++..-......+.++|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4566788999999999999999998877 445556667888999999888776655544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.55 Score=51.44 Aligned_cols=214 Identities=13% Similarity=0.120 Sum_probs=119.8
Q ss_pred ChHHHHHHhhcCCC--CCcchHHHHHHHH--HhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHH
Q 035659 87 SLEYAREMFDQIPQ--PNLYTWNTLIRAY--SSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIH 162 (655)
Q Consensus 87 ~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 162 (655)
++..|.+..+.+.+ ||. .|...+.++ .+.|+.++|..+++.. ...+.. |..|...+-..|...+..+++..++
T Consensus 24 qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEAL-YGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhh-ccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55555555554432 333 244444443 4677777777777665 333322 6667777777777777788888777
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHH----HHHHHHhhcCCCCeeHHHHHHHHHHhCC-C---------hhHHHHHH
Q 035659 163 GMVIKSSFEDDLFISNSLIHFYAICGDLA----MAYCVFVMIGKKDVVSWNSMISGFVQGG-F---------FEKAIELY 228 (655)
Q Consensus 163 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~~g-~---------~~~A~~~~ 228 (655)
+..... .|+......+..+|.+.+++. .|.+++...+++--.-|+. ++.+.+.. . ..-|.+.+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHHH
Confidence 777765 345666666667777776654 3566666555544444443 33333321 1 12344556
Q ss_pred HHHHHCC-CCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 035659 229 REMEMEN-VKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAK 307 (655)
Q Consensus 229 ~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 307 (655)
+.+.+.+ -.-+..-...-+..+...++++ +|++++..-..+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~------eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQ------EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHH------HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6665554 1112222222233344455544 88888844333321333444445566667777888888887777
Q ss_pred HHHcC
Q 035659 308 MKKQG 312 (655)
Q Consensus 308 ~~~~g 312 (655)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 77766
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=48.31 Aligned_cols=61 Identities=25% Similarity=0.266 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456678889999999999887 4445 467888899999999999999999999999999764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00061 Score=50.63 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=40.3
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
...|++++|+..++++++.+|++...+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888877766553
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0013 Score=49.57 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=48.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
..+.+.+++++|.++++++++++|.++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788888888888888888888888888888888888888888888888877643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0011 Score=51.79 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=48.5
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHH
Q 035659 361 YGCGREALDLFSRMQEAKVK-PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEA 438 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A 438 (655)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...|+ ......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 56777778877777765331 2344444566777777777777777777 2 22332 23333446667777777777
Q ss_pred HHHHHh
Q 035659 439 VEFIEK 444 (655)
Q Consensus 439 ~~~~~~ 444 (655)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0016 Score=61.51 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=76.9
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 504 (655)
+-+.+.+++++|+..|.+. .+.|+ ++-|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456789999999999886 66664 666777788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 035659 505 SELRKHMRV 513 (655)
Q Consensus 505 ~~~~~~m~~ 513 (655)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999887665
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.4 Score=48.26 Aligned_cols=82 Identities=9% Similarity=-0.048 Sum_probs=58.2
Q ss_pred CCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCeeHHHHHHH
Q 035659 136 FPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--KDVVSWNSMIS 213 (655)
Q Consensus 136 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~ 213 (655)
+.|..+|-.|+.-+...+..++.+++++++..- ++--..+|...+..-....++...+.+|.+... -++..|...+.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~ 117 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLE 117 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHH
Confidence 346778888888888888888888888887643 344455677677666667788888888877654 36667777777
Q ss_pred HHHhC
Q 035659 214 GFVQG 218 (655)
Q Consensus 214 ~~~~~ 218 (655)
.-.+.
T Consensus 118 YIRr~ 122 (660)
T COG5107 118 YIRRV 122 (660)
T ss_pred HHHhh
Confidence 55553
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0055 Score=55.47 Aligned_cols=59 Identities=22% Similarity=0.197 Sum_probs=44.4
Q ss_pred HHHHhhc--CCCCeeHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 035659 194 YCVFVMI--GKKDVVSWNSMISGFVQG-----GFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252 (655)
Q Consensus 194 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (655)
...|+.. ..+|..+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 3445554 446777777777777654 6666677788899999999999999999988776
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.015 Score=57.44 Aligned_cols=243 Identities=13% Similarity=0.011 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhh-
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT- 342 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~- 342 (655)
+|+..+....... +-+..-|..-+..+...++++++.--.+.-++.. +-......-.-..+...++..+|.+.|+.
T Consensus 67 nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~ 143 (486)
T KOG0550|consen 67 NALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAEEKLKSK 143 (486)
T ss_pred HHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHHHHhhhh
Confidence 6666666665542 3334445555555555666666554443333321 00111222223333333344444433331
Q ss_pred -----------c---CC-----CChhHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHccCcHH
Q 035659 343 -----------V---KS-----RDVFVWSTM-IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC--ACSHSGLVD 400 (655)
Q Consensus 343 -----------~---~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~ 400 (655)
. .. |...+|..+ ...+...|++++|.+.--..++.. ++ ..+..+++ ++...++.+
T Consensus 144 ~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ 220 (486)
T KOG0550|consen 144 QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNAD 220 (486)
T ss_pred hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchH
Confidence 1 11 111233333 245677889988888766665532 21 12222333 345567899
Q ss_pred HHHHHHHHcchhcCccCCcchHH-------------HHHHHHHhcCCHHHHHHHHHhC-CC-----CCChhHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPGVKHYT-------------CMVDMLGRAGLLDEAVEFIEKM-PI-----VPGASVWGALLGAC 461 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~~~~y~-------------~li~~~~~~g~~~~A~~~~~~m-~~-----~p~~~~~~~ll~~~ 461 (655)
.|...|++.. .+.|+-..-. .=.+...+.|++.+|.+.+.+. .+ +|+...|.......
T Consensus 221 ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~ 297 (486)
T KOG0550|consen 221 KAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN 297 (486)
T ss_pred HHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence 9999999876 4456532211 1123456889999999999886 44 44566677777778
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.+.|+.++|+.--+++++++|.-..+|..-++++...++|++|.+-++...+..
T Consensus 298 ~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 298 IRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred cccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999888899999999999999999999998876643
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0065 Score=62.14 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-----CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 035659 173 DLFISNSLIHFYAICGDLAMAYCVFVMIGK-K-----DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAV 246 (655)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 246 (655)
+......+++......+++++..++-+... + -..+..++|+.|.+.|..++++.+++.=...|+-||..|++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 333444455555555556666666555443 1 1234457777777777777777777777777777777777777
Q ss_pred HHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcc
Q 035659 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL 295 (655)
Q Consensus 247 l~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~ 295 (655)
++.+.+.|++. .|.++...|...+ ...+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~------~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYK------SAAKVATEMMLQE-EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHH------HHHHHHHHHHHhh-ccCCchHHHHHHHHHHHh
Confidence 77777777765 7777777776665 555666666666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=58.19 Aligned_cols=140 Identities=12% Similarity=0.081 Sum_probs=101.4
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHhhhcCC-CCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHH
Q 035659 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP-YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIH 182 (655)
Q Consensus 104 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 182 (655)
.+|-.+++..-+.+..+.|..+|.+. ...+ ...+.+...+++. +.-.++.+.|..+|+..++. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a-~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRA-RKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH-HcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 36888888888888899999999998 4332 2233333333332 22346677799999999987 5788899999999
Q ss_pred HHHhcCCHHHHHHHHhhcCCC------CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 035659 183 FYAICGDLAMAYCVFVMIGKK------DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248 (655)
Q Consensus 183 ~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (655)
.+.+.|+.+.|+.+|++.... -...|...+..=.+.|+.+.+.++.+++.+. .|+...+..+++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 999999999999999988762 3358999999999999999999999998874 444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.041 Score=49.46 Aligned_cols=80 Identities=14% Similarity=0.070 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHH
Q 035659 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPN--AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTC 424 (655)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~ 424 (655)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|+..++..... .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 34556666667777777777777777765422221 235666666777777777777777776642 232 333444
Q ss_pred HHHHHH
Q 035659 425 MVDMLG 430 (655)
Q Consensus 425 li~~~~ 430 (655)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 444444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.79 Score=49.25 Aligned_cols=303 Identities=11% Similarity=0.079 Sum_probs=147.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCC---chHHHHHHHHHHHhCCCCChhHHHHHHH
Q 035659 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ---FRVGQAIHGMVIKSSFEDDLFISNSLIH 182 (655)
Q Consensus 106 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~ 182 (655)
-..+|.-++..+.+..|+++-..+ ...-..- ...|.....-..+..+ .+.+..+-+++. ... .+-..|..+..
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l-~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~iA~ 515 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLL-NLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAIAR 515 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHh-CCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHHHH
Confidence 455677777778888888887776 3221111 4445555444444422 222233322222 212 33445666666
Q ss_pred HHHhcCCHHHHHHHHhhcCCC--------CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC
Q 035659 183 FYAICGDLAMAYCVFVMIGKK--------DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254 (655)
Q Consensus 183 ~~~~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 254 (655)
--..+|+.+-|..+++.=+.. +..-+..-+.-..+.|+.+-...++-.|...- +...|...++
T Consensus 516 ~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~l~------ 586 (829)
T KOG2280|consen 516 RAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMTLR------ 586 (829)
T ss_pred HHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHHH------
Confidence 666788888888887654431 33345566667777788777777666655431 1111111110
Q ss_pred ccccCCChHHHHHHHHHHHHCC------------------------------CCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 035659 255 DLEFGRWPNEALSIFHELQLSK------------------------------NVNPDEFTFVSVLSACAQLGAMDIGVQI 304 (655)
Q Consensus 255 ~~~~~~~~~~A~~l~~~m~~~~------------------------------~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 304 (655)
+. .-|..+|.+..+.. .+.+-........+++++........+.
T Consensus 587 ~~------p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 587 NQ------PLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred hc------hhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHH
Confidence 00 02222222222110 0111111222233334433332111111
Q ss_pred HH----------HHH-HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 035659 305 HA----------KMK-KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373 (655)
Q Consensus 305 ~~----------~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (655)
.+ .+. +.|......+.+--+.-+...|+..+|.++-.+.+-+|-..|---+.+++..+++++-.++-+.
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 11 111 1122222223333344445556666666666666666666666666666666666655555444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 035659 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIE 443 (655)
Q Consensus 374 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~ 443 (655)
++. +.-|.-...+|.+.|+.++|.+++.... |.. -.+.+|.+.|++.+|.++--
T Consensus 741 kks------PIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 741 KKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cCC------CCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHH
Confidence 431 2334445566666666666666665543 111 35566666666666665543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0064 Score=57.94 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=84.4
Q ss_pred cCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 416 VPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIH---ENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 416 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
.-|...|..|...|.+.|+++.|..-|.+. .+.| ++..+..+..++... ....++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 346889999999999999999999999876 3333 456666666664332 34678999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCCc
Q 035659 491 LSNIYAKTGKWDNVSELRKHMRVSGLK 517 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~~~m~~~g~~ 517 (655)
|+..+...|++.+|...|+.|.+..-.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00063 Score=42.24 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=30.7
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCchhHHH
Q 035659 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506 (655)
Q Consensus 474 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 506 (655)
++++++++|+|+.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.56 Score=46.73 Aligned_cols=109 Identities=13% Similarity=0.166 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 463 (655)
.+.+..+.-|...|....|.++-... ++ |+...|...+.+|+..|+|++-.++... +..+.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555666777788888887776554 33 7888899999999999999988877654 3456788889999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
.|+..+|.....++ .+..-..+|.+.|+|.+|.+.--
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 99999988887772 12456778889999999877633
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.007 Score=52.52 Aligned_cols=87 Identities=13% Similarity=0.057 Sum_probs=75.2
Q ss_pred HHHHhcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH
Q 035659 427 DMLGRAGLLDEAVEFIEKMP-I-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 504 (655)
.-+...|++++|..+|+-+- . .-|..-|..|...+...++++.|...+..+..++++|+..+...+.+|...|+.+.|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 33557899999999998761 1 124567888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 035659 505 SELRKHMRV 513 (655)
Q Consensus 505 ~~~~~~m~~ 513 (655)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999998877
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.11 Score=54.39 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=46.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHH
Q 035659 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439 (655)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 439 (655)
.+|-.+-++++-+++-. .+..+...+..-+-+...+..|-++|..|-. ...++++....+++++|.
T Consensus 728 d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAF 793 (1081)
T KOG1538|consen 728 DHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAF 793 (1081)
T ss_pred cccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhH
Confidence 34444444444443322 2344455555455566667777778877742 235677777888888888
Q ss_pred HHHHhCC-CCCCh
Q 035659 440 EFIEKMP-IVPGA 451 (655)
Q Consensus 440 ~~~~~m~-~~p~~ 451 (655)
.+-++.| ..||+
T Consensus 794 alAe~hPe~~~dV 806 (1081)
T KOG1538|consen 794 ALAEKHPEFKDDV 806 (1081)
T ss_pred hhhhhCccccccc
Confidence 8888774 34443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.074 Score=52.43 Aligned_cols=171 Identities=13% Similarity=0.101 Sum_probs=95.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCC--CC---chhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 035659 287 SVLSACAQLGAMDIGVQIHAKMKKQGI--KL---NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361 (655)
Q Consensus 287 ~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 361 (655)
.....|-..+++++|.+.|.+..+... .. -...|.....+|.+. ++++|.+.+ ...+..|...
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~-----------~~A~~~y~~~ 107 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY-----------EKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH-----------HHHHHHHHHC
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH-----------HHHHHHHHhc
Confidence 334455666777777776666543210 00 011222222222222 444444433 3345566666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHH
Q 035659 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS-GLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~ 436 (655)
|++..|-.++.+ +...|... |++++|.+.|++..+.+..... ...+..+...+.+.|+++
T Consensus 108 G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 108 GRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp T-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred CcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 666666555544 34456666 8889999888888765433322 345667778899999999
Q ss_pred HHHHHHHhCC---CC-----CChh-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 437 EAVEFIEKMP---IV-----PGAS-VWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 437 ~A~~~~~~m~---~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
+|.++|++.. .. .++. .+-..+-.+...||...|.+.+++..+.+|.-
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9999998861 11 1111 22223335567799999999999999988753
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.022 Score=58.32 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=97.7
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHH
Q 035659 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ--GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS----RDVFVW 351 (655)
Q Consensus 278 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 351 (655)
.+.+...+..+++.+....+++.+..++-+.... ....-..+..++|+.|.+.|..+.+..+++.=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4667778888888888888999999988888775 2333455667999999999999999998877554 688999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 396 (655)
|.++..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999998887778888887777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0094 Score=47.77 Aligned_cols=79 Identities=9% Similarity=-0.009 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHhhhcCCC-CCCcchHHHHHHHHHccCC--------chHHHHHHHHHHHhCCCCChhHH
Q 035659 107 NTLIRAYSSSAEPIQSFMIFLQLVYNSPY-FPNEFTFPFVIKAAARLVQ--------FRVGQAIHGMVIKSSFEDDLFIS 177 (655)
Q Consensus 107 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~pd~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~ 177 (655)
...|..+...+++.....+|+.. ++.|+ .|+..+|+.+|.+.++..- .-....+++.|+..++.|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 44566666679999999999999 89999 8999999999998876532 33566788899999999999999
Q ss_pred HHHHHHHHh
Q 035659 178 NSLIHFYAI 186 (655)
Q Consensus 178 ~~li~~~~~ 186 (655)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0018 Score=48.02 Aligned_cols=55 Identities=27% Similarity=0.318 Sum_probs=27.7
Q ss_pred hcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 431 RAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 431 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
..|++++|+++|+++ ...| +..++..+..+|...|++++|..+++++...+|+++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 345555555555554 2222 344445555555555555555555555555555543
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.25 Score=51.72 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=54.2
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 331 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
|=.+-+.++-+++...+..+...+..-+.+...+.-|-++|.+|-+. .+++......+++++|..+-+..-
T Consensus 730 gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 730 GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc
Confidence 33344444444444445555555555555666677777888777542 256666777788888887777654
Q ss_pred hhcCccCCcchHHHHHHHHHhcCCHHHHHHHH
Q 035659 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFI 442 (655)
Q Consensus 411 ~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~ 442 (655)
.+.||+ |.-...-++...+++||.+.|
T Consensus 801 ---e~~~dV--y~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 801 ---EFKDDV--YMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred ---cccccc--cchHHHHhhhhhhHHHHHHHH
Confidence 345553 223333334444444444333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0025 Score=47.47 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=51.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcC-CHHHHHHHHHHHhccCC
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHE-NVELAEYACSHLLELEP 482 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 482 (655)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777778888888888888888775 3344 4678888888899998 79999999999998887
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.16 Score=50.30 Aligned_cols=59 Identities=8% Similarity=-0.006 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQE----AKV-KPNAVTFTNVLCACSHSGLVDEGRMFFNQ 408 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 408 (655)
.+..+..++.-.|+++.|.+.|+.-.. .|- .....+..+|...|.-...+++|+.+++.
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666654332 111 11233344555556555666667666654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.58 Score=49.63 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM----PIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
++-.|..--...|..+.|++.--.+ .+-|-..+|..|.-+.+....+...-++|-++
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 4444444455677777777654333 23344555555544433333333333333333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.06 Score=49.98 Aligned_cols=184 Identities=12% Similarity=0.079 Sum_probs=126.3
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCC--CCCcchH--------HHHHHHHHhCCCcHHHHH
Q 035659 55 KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIP--QPNLYTW--------NTLIRAYSSSAEPIQSFM 124 (655)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~--~~~~~~~--------~~li~~~~~~g~~~~A~~ 124 (655)
+.+|+.+... ...-+++|.+.|.-.. -+++-+..|+.-. +..+..| +.++..+.-.+.+.-.++
T Consensus 125 R~lhAe~~~~----lgnpqesLdRl~~L~~--~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d 198 (366)
T KOG2796|consen 125 RILHAELQQY----LGNPQESLDRLHKLKT--VVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVD 198 (366)
T ss_pred HHHHHHHHHh----cCCcHHHHHHHHHHHH--HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHH
Confidence 6677766654 2223667777766555 5555555555433 2233333 567777777788888899
Q ss_pred HHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCC-----CChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 035659 125 IFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFE-----DDLFISNSLIHFYAICGDLAMAYCVFVM 199 (655)
Q Consensus 125 ~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~ 199 (655)
++... .....+-++.-...|.+.--+.||.+.|...++.+.+..-. ....+..+....|.-.+++..|...|++
T Consensus 199 ~~~~v-i~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 199 AYHSV-IKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred HHHHH-HHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 99988 55444456677777888888899999999999987764333 3344444455567778899999999998
Q ss_pred cCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 035659 200 IGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247 (655)
Q Consensus 200 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 247 (655)
++. .|.+.-|.-.-+..-.|+..+|++.++.|++. .|...+-++++
T Consensus 278 i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 278 ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 886 35566666555556678999999999999876 46655555444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.015 Score=56.12 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHH
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPEN---HGALVLLSN 493 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 493 (655)
|..-+..+.+.|++++|...|+.. ...|+ ...+..+...|...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444445556666666666654 22233 2355556666677777777777777777665543 344555566
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 035659 494 IYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 494 ~~~~~g~~~~a~~~~~~m~~ 513 (655)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 67777777777777776655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=1.2 Score=47.30 Aligned_cols=246 Identities=14% Similarity=0.061 Sum_probs=131.4
Q ss_pred hHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCc--------chHHHHHHHHHccCCchHHH
Q 035659 88 LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNE--------FTFPFVIKAAARLVQFRVGQ 159 (655)
Q Consensus 88 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~--------~t~~~ll~~~~~~~~~~~a~ 159 (655)
+++|.+..+.-|+ +..|..|...-...-.++-|...|-+.-.-.|++.-. ..-..-+ .+--|.+++|+
T Consensus 679 ledA~qfiEdnPH--prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPH--PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcCCc--hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhh
Confidence 5666666555544 4568777666555555666666665541222322100 0000111 12236677777
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CeeHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 035659 160 AIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKK-----DVVSWNSMISGFVQGGFFEKAIELYREMEME 234 (655)
Q Consensus 160 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (655)
+++-.+-+.. ..|.++.+.|++-...++++.-... -..+|+.+...++....+++|.+.|..-...
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 7776665443 2466777778877777777553321 1246777777777777777777766543211
Q ss_pred CCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 035659 235 NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK 314 (655)
Q Consensus 235 g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 314 (655)
...+.++.....++ +-..+ .. . ++-|....-.+...+.+.|.-++|.+.|-+. +.
T Consensus 826 ---------e~~~ecly~le~f~------~LE~l----a~-~-Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~- 880 (1189)
T KOG2041|consen 826 ---------ENQIECLYRLELFG------ELEVL----AR-T-LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL- 880 (1189)
T ss_pred ---------HhHHHHHHHHHhhh------hHHHH----HH-h-cCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-
Confidence 11233333333221 11111 11 1 4455556667777778888777777665432 21
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHH--------------HHHHHHHcCChHHHHHHHHHHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWST--------------MIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
| .+-++.+...+++.+|.++-+...-|.+.+.-+ -|..+.+.|+.-+|.+++.+|.+
T Consensus 881 p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 881 P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 2 234556666777777777776655544433211 13344555666666666666643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.031 Score=46.54 Aligned_cols=84 Identities=15% Similarity=0.047 Sum_probs=46.5
Q ss_pred HHHHhcCCHHHHHHHHHhC---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHhc
Q 035659 427 DMLGRAGLLDEAVEFIEKM---PIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPE---NHGALVLLSNIYAKT 498 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 498 (655)
.++-..|+.++|+.+|++. +.... ...+-.+.+.++..|++++|..++++..+..|+ +......++.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444556666666666553 11111 224444556666666666666666666665555 444445555566666
Q ss_pred CCchhHHHHHHH
Q 035659 499 GKWDNVSELRKH 510 (655)
Q Consensus 499 g~~~~a~~~~~~ 510 (655)
|+.++|.+.+-.
T Consensus 89 gr~~eAl~~~l~ 100 (120)
T PF12688_consen 89 GRPKEALEWLLE 100 (120)
T ss_pred CCHHHHHHHHHH
Confidence 666666665543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.3 Score=49.16 Aligned_cols=163 Identities=16% Similarity=0.117 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC---Ch----hHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKSR---DV----FVWSTMIAGFAM---YGCGREALDLFSRMQEAKVKPNAVTFTNV 389 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 389 (655)
...++-.|-...+++...++.+.+... ++ ..-....-++-+ .|+.++|++++..+....-.++..||..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334555677788888888888887653 11 111223334445 67888888888886665566777777766
Q ss_pred HHHHHc---------cCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHH----HHHHH---Hh-C---C---
Q 035659 390 LCACSH---------SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE----AVEFI---EK-M---P--- 446 (655)
Q Consensus 390 l~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~----A~~~~---~~-m---~--- 446 (655)
...|-. ....++|...|.+.- .+.|+..+--.++..+...|.-.+ ..++- .. . +
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 655421 224677777777653 455665443344444444443222 22222 11 1 1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 447 IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 447 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
-..|-..+.+++.++.-.|+.+.|.+.++++.++.|+..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 123445567899999999999999999999999988664
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0081 Score=60.87 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=37.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGA----SVWGALLGACKIHENVELAEYACSHLLEL 480 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 480 (655)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666666666666666666653 445553 23666666666666666666666666665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.094 Score=45.43 Aligned_cols=19 Identities=21% Similarity=0.029 Sum_probs=7.1
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 035659 459 GACKIHENVELAEYACSHL 477 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~ 477 (655)
.++...|+.+.|++.|+.+
T Consensus 111 ~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.33 Score=47.79 Aligned_cols=156 Identities=16% Similarity=0.256 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhC-CChhHHHHHHHHHHHC----CCCCC--HhhHHHHHH
Q 035659 176 ISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG-GFFEKAIELYREMEME----NVKPD--EVTMVAVLS 248 (655)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~ 248 (655)
.+...+..|.+.|++..|-+++ ..+...|-+. |++++|++.|++..+. | .+. ...+..+..
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 3455566777777777776654 3456666666 7888888888776442 3 111 345566777
Q ss_pred HHhccCccccCCChHHHHHHHHHHHHCCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCC--chh
Q 035659 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVN-----PDEF-TFVSVLSACAQLGAMDIGVQIHAKMKKQ--GIKL--NCY 318 (655)
Q Consensus 249 ~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~-----p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~--~~~ 318 (655)
.+.+.++++ +|+++|++..... .. .+.. .|...+-.+...|+...|...++..... ++.. ...
T Consensus 164 l~~~l~~y~------~A~~~~e~~~~~~-l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 164 LYARLGRYE------EAIEIYEEVAKKC-LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHTT-HH------HHHHHHHHHHHTC-CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHhCCHH------HHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 888888866 9999999887643 21 1221 2223333556678999999999988754 2322 245
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHhhcCCCChhH
Q 035659 319 LTTSLIDMYTK--CGNLDKALEVFHTVKSRDVFV 350 (655)
Q Consensus 319 ~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~ 350 (655)
....|+++|-. ...+++|..-|+.+.+-|..-
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHH
Confidence 66677777764 345778888888887766543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.11 Score=55.58 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhH
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASV 453 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 453 (655)
+...|..+.......|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++. .+.|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 344555554444556777777777777763 3466667777777777777777777777664 34444333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.018 Score=52.24 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=68.3
Q ss_pred HHHhhc--CCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------------
Q 035659 338 EVFHTV--KSRDVFVWSTMIAGFAMY-----GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS-------------- 396 (655)
Q Consensus 338 ~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------- 396 (655)
..|+.. ..++..+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 345666666677666653 55666667788888888888888998888876542
Q ss_pred --CcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCC
Q 035659 397 --GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434 (655)
Q Consensus 397 --g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~ 434 (655)
.+-+-|++++++|... |+-||.+++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 1346678888888664 888888888888888877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.11 Score=45.67 Aligned_cols=130 Identities=12% Similarity=0.018 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHH
Q 035659 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-----DVFVWS 352 (655)
Q Consensus 278 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 352 (655)
..|+...-..+..++...|+..+|...|++...--+.-|..+.-.+.++....++...|...++.+-+- .....-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 556666667777777788888888888877776555666777777777777777777777777665431 233344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHc
Q 035659 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409 (655)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 409 (655)
.+...|...|++.+|...|+...+. -|+...-.....-+.++|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4555666666666666666666663 333322222222344555555554444333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.018 Score=56.72 Aligned_cols=257 Identities=14% Similarity=0.053 Sum_probs=159.7
Q ss_pred HHhccCccccCCChHHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHH----cCCC-Cchhh
Q 035659 249 ACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE----FTFVSVLSACAQLGAMDIGVQIHAKMKK----QGIK-LNCYL 319 (655)
Q Consensus 249 ~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~g~~-~~~~~ 319 (655)
-+++.|+.. ..+.+|+...+-| .-|. ..|+.+-++|.-++++++|.++|..=+. .|-+ -....
T Consensus 26 RLck~gdcr------aGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 26 RLCKMGDCR------AGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHhccchh------hhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 467778865 7788898888776 3343 3566777888888999999998754221 1110 11122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCC--------------------hHHHHHH
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKS-------R--DVFVWSTMIAGFAMYGC--------------------GREALDL 370 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~~ 370 (655)
...|...+--.|.+++|.-.-.+-.. + ....+..+...|...|+ .+.|.++
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 23344444455667766544332111 1 12234445555554442 1223444
Q ss_pred HHHHH----HcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHcc---hhcCccC-CcchHHHHHHHHHhcCCHHHHHHH
Q 035659 371 FSRMQ----EAKVK-PNAVTFTNVLCACSHSGLVDEGRMFFNQME---PVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEF 441 (655)
Q Consensus 371 ~~~m~----~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~ 441 (655)
|.+=. +.|-. .....|..|-..|.-.|+++.|+..++.-. +.+|-.. ....+..+.+++.-.|+++.|.+.
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 43221 11100 112345566666667789999988776532 2334332 245788889999999999999998
Q ss_pred HHhC-------CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----C--CCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 442 IEKM-------PI-VPGASVWGALLGACKIHENVELAEYACSHLLEL----E--PENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 442 ~~~m-------~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
|+.. +- .-...+..+|...|....+++.|+..+.+-+.+ + -....++++|+++|...|..+.|..+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8764 21 123567778899999999999999888776553 2 23457899999999999999999887
Q ss_pred HHHHHh
Q 035659 508 RKHMRV 513 (655)
Q Consensus 508 ~~~m~~ 513 (655)
.+.-.+
T Consensus 338 ae~hl~ 343 (639)
T KOG1130|consen 338 AELHLR 343 (639)
T ss_pred HHHHHH
Confidence 765543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.47 E-value=1.7 Score=46.87 Aligned_cols=338 Identities=12% Similarity=0.086 Sum_probs=196.7
Q ss_pred hcCCCCCCcchH-----HHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhcCC
Q 035659 131 YNSPYFPNEFTF-----PFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG---DLAMAYCVFVMIGK 202 (655)
Q Consensus 131 ~~~~~~pd~~t~-----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~~~~ 202 (655)
.+-|+..+..-| ..+|.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+-+..+-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 355555554444 345667777788889998887764322122 567777777777763 33445555566666
Q ss_pred --CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----CCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCC
Q 035659 203 --KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVK----PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276 (655)
Q Consensus 203 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~ 276 (655)
...++|..+..--.+.|+++-|..+++.=...+-. .+..-+...+.-+.+.|+.+ -...++..+...-
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~------Li~~Vllhlk~~~ 576 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTD------LIIQVLLHLKNKL 576 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCch------hHHHHHHHHHHHH
Confidence 57789999999999999999999887642222110 11122333344444444433 3333333332211
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhh-c------CCCChh
Q 035659 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT-V------KSRDVF 349 (655)
Q Consensus 277 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~------~~~~~~ 349 (655)
+...|.. -..+.-.|..+|.+..+..-. ..|-+.|-...+...+ ..|.. - .+.-..
T Consensus 577 ----~~s~l~~------~l~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~-a~~~~q~~~~~~~~~~r~~ 639 (829)
T KOG2280|consen 577 ----NRSSLFM------TLRNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQAL-ASFHLQASYAAETIEGRIP 639 (829)
T ss_pred ----HHHHHHH------HHHhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhh-hhhhhhhhhhhhhhcccch
Confidence 1111111 112233455566555542111 1122223322222222 21111 0 011122
Q ss_pred HHHHHHHHHHHcCCh---HH-------HHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC
Q 035659 350 VWSTMIAGFAMYGCG---RE-------ALDLFSRMQE-AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG 418 (655)
Q Consensus 350 ~~~~li~~~~~~g~~---~~-------A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 418 (655)
........+++.... ++ -+.+.+.+.. .|..-..-|.+-.+.-+...|...+|.++-.+.+ -||
T Consensus 640 ~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipd 714 (829)
T KOG2280|consen 640 ALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPD 714 (829)
T ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----Ccc
Confidence 223333444443331 11 1222333322 2333444556666777888899999999887764 488
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 498 (655)
-..|..-+.+++..+++++-+++-+.+. .+.-|.-+..+|.+.|+.++|.+.+.+.-.+ .-...+|.+.
T Consensus 715 Kr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~ 783 (829)
T KOG2280|consen 715 KRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRV 783 (829)
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHh
Confidence 8899999999999999999999988874 3667888899999999999999888775322 1567889999
Q ss_pred CCchhHHHHH
Q 035659 499 GKWDNVSELR 508 (655)
Q Consensus 499 g~~~~a~~~~ 508 (655)
|++.+|.++-
T Consensus 784 ~~~~eAad~A 793 (829)
T KOG2280|consen 784 GDVKEAADLA 793 (829)
T ss_pred ccHHHHHHHH
Confidence 9999998764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0057 Score=40.66 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
.+|..+..++...|++++|+++++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999988877653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.048 Score=47.66 Aligned_cols=124 Identities=18% Similarity=0.231 Sum_probs=78.1
Q ss_pred HHHHHHHHH---HHHccCcHHHHHHHHHHcchhcC--ccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHH
Q 035659 383 AVTFTNVLC---ACSHSGLVDEGRMFFNQMEPVYG--VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457 (655)
Q Consensus 383 ~~t~~~ll~---a~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 457 (655)
...|..++. .....++.+.+...+..+...|. +-|+... ..........++.+ -......+
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l 68 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERL 68 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHH
Confidence 344444433 23456777788777777766542 1122111 11222223333332 12355667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh-----CCCccCC
Q 035659 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV-----SGLKKEP 520 (655)
Q Consensus 458 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 520 (655)
+..+...|+++.|....++++..+|-+...|..++.+|...|+..+|.++++.+.+ .|+.|++
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 78888999999999999999999999999999999999999999999999998753 3665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.2 Score=44.62 Aligned_cols=264 Identities=17% Similarity=0.041 Sum_probs=133.0
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCee--HHHHHHHHHHhCCChhHHH
Q 035659 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK-KDVV--SWNSMISGFVQGGFFEKAI 225 (655)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~--~~~~li~~~~~~g~~~~A~ 225 (655)
+.+..++..|...+..+++.. +.+..-|..-...|...|++++|.--.++-.+ +|-. ...-.-..+...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 334445566666677777765 33455566666666667777776655433222 2222 2222333333344444444
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHH-HHhccCCHHHHHHH
Q 035659 226 ELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLS-ACAQLGAMDIGVQI 304 (655)
Q Consensus 226 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~-~~~~~g~~~~a~~~ 304 (655)
+.|+. ...+ . ...|+..++.......-+|.-.++-.+-. .+...|+.+.|.++
T Consensus 138 ~~~~~---------~~~~-~----------------~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 138 EKLKS---------KQAY-K----------------AANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHhhh---------hhhh-H----------------HhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 44331 1111 0 00222223332222211233333333322 23556677777776
Q ss_pred HHHHHHcCCCCchhhHHHHHH--HHHhcCCHHHHHHHHhhcCCCChh---------------HHHHHHHHHHHcCChHHH
Q 035659 305 HAKMKKQGIKLNCYLTTSLID--MYTKCGNLDKALEVFHTVKSRDVF---------------VWSTMIAGFAMYGCGREA 367 (655)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~A 367 (655)
-..+.+.. ..+ .+..+++ ++.-.++.+.|..-|++...-|.. .|.--..-..++|++.+|
T Consensus 192 a~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 192 AIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 66666543 111 1222222 222346667777777665542221 222223345567888888
Q ss_pred HHHHHHHHHc---CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 035659 368 LDLFSRMQEA---KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIE 443 (655)
Q Consensus 368 ~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~ 443 (655)
.+.|.+.+.. +++|+...|.....+..+.|+.++|+.--+...+ +.+. +..|..-..++.-.++|++|.+-++
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887753 3455666677777777788888888777776652 2332 1222222234445667777777776
Q ss_pred hC
Q 035659 444 KM 445 (655)
Q Consensus 444 ~m 445 (655)
+.
T Consensus 346 ~a 347 (486)
T KOG0550|consen 346 KA 347 (486)
T ss_pred HH
Confidence 64
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.071 Score=44.39 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=60.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHH
Q 035659 354 MIAGFAMYGCGREALDLFSRMQEAKVKPN--AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVD 427 (655)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~ 427 (655)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++.....+ |+ ......+..
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHH
Confidence 34566678888888888888888776654 3456667777888888888888888877542 33 122223344
Q ss_pred HHHhcCCHHHHHHHHHh
Q 035659 428 MLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~ 444 (655)
++...|+.++|++.+-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 66777888888777644
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.35 Score=40.06 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=87.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 437 (655)
+.-.|..++..++..+...+. +..-++.+|.-....-+-+-..+.++.+-+.+.+. .+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 344677888888888887643 45556666655455555566666777665433332 2344444
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 035659 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517 (655)
Q Consensus 438 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 517 (655)
....+-.++ .+..-...-+......|+-+.-.+++..+.+.+..++.....++++|.+.|...++.+++.+.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444444432 133344556778888999999999999998777668899999999999999999999999999999975
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.93 Score=43.38 Aligned_cols=55 Identities=7% Similarity=0.016 Sum_probs=27.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHc
Q 035659 355 IAGFAMYGCGREALDLFSRMQEA--KVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 409 (655)
..-|.+.|.+..|+.-|+.+.+. +.+........+..++...|..++|..+...+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455556665666666555543 12222334444555555556655555554433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.26 Score=47.17 Aligned_cols=172 Identities=11% Similarity=0.064 Sum_probs=99.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCh---h---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 035659 323 LIDMYTKCGNLDKALEVFHTVKSRDV---F---VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH- 395 (655)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~~~~~~~---~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 395 (655)
....+.+.|++++|.+.|+.+....+ . ..-.++.+|.+.+++++|...|++..+....-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 33444556777777777777654211 1 1233456667778888888888887774322222333333333321
Q ss_pred -cC---------------c---HHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHH--
Q 035659 396 -SG---------------L---VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVW-- 454 (655)
Q Consensus 396 -~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~-- 454 (655)
.+ + ..+|...|+.+++. -|+ ..-..+|...+..+. +...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~-------------S~ya~~A~~rl~~l~---~~la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPN-------------SQYTTDATKRLVFLK---DRLAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcC-------------ChhHHHHHHHHHHHH---HHHHHHH
Confidence 10 1 22344444444443 233 233444444433331 11111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 455 GALLGACKIHENVELAEYACSHLLELEPEN---HGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 455 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
-.+..-|.+.|.+..|..-++.+++.-|+. ..+...+..+|.+.|..++|.++.+.+..
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 133455888899999999999999977654 45677889999999999999988776543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.023 Score=42.66 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=51.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV 489 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 489 (655)
..|.+.+++++|.++++++ ...| +...|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5678889999999999887 4444 4677788888899999999999999999999997765443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.36 Score=45.08 Aligned_cols=134 Identities=11% Similarity=0.018 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHH---
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV--- 426 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li--- 426 (655)
..+.++..+.-+|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|..+|+...+. .-..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445566666667777777888888887665666777777777778888888888888866544 2223333333333
Q ss_pred --HHHHhcCCHHHHHHHHHhCCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 427 --DMLGRAGLLDEAVEFIEKMPIVP--GASVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 427 --~~~~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
..|.-++++.+|...+.+.+... |+..-|.-.-...-.|+...|.+..+.+.+..|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 33444556666666666653221 22333333333334566777777777777766643
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=2.1 Score=42.62 Aligned_cols=288 Identities=11% Similarity=0.045 Sum_probs=139.4
Q ss_pred hHHHHHHHHHh--CCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHH--ccCCchHHHHHHHHHHHhCCCCChhH--HH
Q 035659 105 TWNTLIRAYSS--SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAA--RLVQFRVGQAIHGMVIKSSFEDDLFI--SN 178 (655)
Q Consensus 105 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~ 178 (655)
.|.+|-.++.- .|+-..|..+-.+. . .-+..|...+..|+.+-. -.|+.+.|++-|+.|+.. |.... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~-~-~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARA-S-KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHH-H-hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 35555555543 35555665555444 1 123456666666665432 347777777777777642 22111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--C-CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHh--hHHHHHHHHhc
Q 035659 179 SLIHFYAICGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVQGGFFEKAIELYREMEMEN-VKPDEV--TMVAVLSACAK 252 (655)
Q Consensus 179 ~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~ 252 (655)
.|.----+.|+.+.|+..-+..-+ | -...|.+.+...+..|+++.|+++++.-++.. +.++.. .-..|+.+-..
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 222222356777777776665543 2 23567788888888888888888887665442 333322 11222222111
Q ss_pred c-CccccCCChHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 035659 253 K-RDLEFGRWPNEALSIFHELQLSKNVNPDEFT-FVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330 (655)
Q Consensus 253 ~-~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 330 (655)
. -+-+ +..|...-.+..+ +.||.+- -.....++.+.|++.++-.+++.+-+.. |.+.++. +-.+.+.
T Consensus 239 s~ldad----p~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~ 307 (531)
T COG3898 239 SLLDAD----PASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARS 307 (531)
T ss_pred HHhcCC----hHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcC
Confidence 0 0001 1233333333222 4555432 2233445667777777777777776654 3333322 2223445
Q ss_pred CCHHHH----HHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCcHHHHHHH
Q 035659 331 GNLDKA----LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC-SHSGLVDEGRMF 405 (655)
Q Consensus 331 g~~~~A----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~ 405 (655)
|+.... .+-++.|+..+..+-.++..+-...|++..|..--+.... ..|....|..+...- ...|+-.++.+.
T Consensus 308 gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 308 GDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred CCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHH
Confidence 543221 1223344444555555555554455555444443333333 344444444444332 223555555555
Q ss_pred HHHcc
Q 035659 406 FNQME 410 (655)
Q Consensus 406 ~~~~~ 410 (655)
+.+..
T Consensus 386 lAqav 390 (531)
T COG3898 386 LAQAV 390 (531)
T ss_pred HHHHh
Confidence 44444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.091 Score=50.72 Aligned_cols=98 Identities=11% Similarity=0.134 Sum_probs=66.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCc----chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV----KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWG 455 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~ 455 (655)
.|...+....+.|++++|...|+.+.+.| |+. ..+..+...|...|++++|...|+.+ ...|+ ...+-
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444433455677788887777777653 332 35666777788888888888887776 11122 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 456 ALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 456 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.+...+...|+.+.|...++++++..|++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 566677788999999999999998888764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.071 Score=52.98 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
..++..|..++.+.+++..|++..+++++++|+|..+.+.-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567778888899999999999999999999999999999999999999999999999998873
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.016 Score=44.28 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCC---CcchHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLEL----EPE---NHGALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
.+++.+...+...|++++|+..+++++++ ++. -..++..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777777777777777777654 111 24567778888888888888888887654
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.68 E-value=3.5 Score=43.52 Aligned_cols=184 Identities=15% Similarity=0.134 Sum_probs=126.2
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 391 (655)
++..+|...++.-.+.|+.+.+.-.|+...-+ =...|--.+.-....|+.+-|..++....+--++-...+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35678888888889999999999999988754 233555555555556888888887776665433322222222222
Q ss_pred HHHccCcHHHHHHHHHHcchhcCccCCc-chHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCChhHHHHHHH-----HH
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGV-KHYTCMVDMLGRAGLLDEAV---EFIEKM-PIVPGASVWGALLG-----AC 461 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~y~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~-----~~ 461 (655)
-+...|+++.|..+++.+.+. . |+. ..-..-+....+.|..+.+. +++... +.+-+..+...+.- .+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 256678999999999999875 3 652 33334456677889998888 555443 22223333333332 24
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc
Q 035659 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW 501 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 501 (655)
...++.+.|..++.++.+..|++...|..+++.....+..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 5668999999999999999999999999999888776643
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.016 Score=44.24 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM-------P-IVPG-ASVWGALLGACKIHENVELAEYACSHLLEL 480 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 480 (655)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555555666666666665555543 1 1122 456667777777777777777777776653
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.11 Score=43.59 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 396 (655)
..++.+++-++++.|+++....+.+..-..|+. +-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 445666666666777766666666544322111 0000000 112234667777788888888778
Q ss_pred CcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 397 GLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 397 g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
|++..|.++.+...+.|++.-+..+|..|+.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 8888888888887777777666667766665
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.15 Score=48.89 Aligned_cols=108 Identities=9% Similarity=-0.010 Sum_probs=67.5
Q ss_pred CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhcCC---CCeeHHHHH
Q 035659 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG---DLAMAYCVFVMIGK---KDVVSWNSM 211 (655)
Q Consensus 138 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~~~~---~~~~~~~~l 211 (655)
|...|-.|-.++...|+...|..-|....+.. +++...+..+...+.... .-.++..+|+++.. .|+.+-.-|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 66667777777777777777777777777654 445555555555443332 24466777776654 245566666
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 035659 212 ISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLS 248 (655)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (655)
...+.+.|++.+|...|+.|.+.. |....+..++.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 777777788888888888777653 33344444444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.9 Score=39.99 Aligned_cols=205 Identities=14% Similarity=0.100 Sum_probs=121.3
Q ss_pred CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC--hhHH
Q 035659 278 VNPDEF----TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD--VFVW 351 (655)
Q Consensus 278 ~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 351 (655)
+.||.. .|.-...+|...+++++|...+.+..+. .+.+...|.+ ...++.|.-+.+++.+-+ +..|
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 566643 4555566788888999999887777642 1222222221 133445555555554432 3356
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhc----CccCCcchHHHH
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQE--AKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY----GVVPGVKHYTCM 425 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~y~~l 425 (655)
+-....|..+|..+-|-..+++.-+ .++.| ++|+++|++..... ..+.-...|...
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~P------------------d~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKP------------------DDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCH------------------HHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 6667788888888877776665533 13444 44444444433210 111123445666
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-----C--CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCCcchHHHHHH
Q 035659 426 VDMLGRAGLLDEAVEFIEKMP-----I--VPGA-SVWGALLGACKIHENVELAEYACSHLLEL----EPENHGALVLLSN 493 (655)
Q Consensus 426 i~~~~~~g~~~~A~~~~~~m~-----~--~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~ 493 (655)
...|.+..++++|-..+.+-. + -|+. ..+-+.|-.+....++..|++.++.--+. +|++..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 677888888888877766542 1 1222 22444445566667899999999886664 3667777777877
Q ss_pred HHHhcCCchhHHHHHH
Q 035659 494 IYAKTGKWDNVSELRK 509 (655)
Q Consensus 494 ~~~~~g~~~~a~~~~~ 509 (655)
+| ..|+.+++.++..
T Consensus 237 ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVLS 251 (308)
T ss_pred Hh-ccCCHHHHHHHHc
Confidence 76 4677777766543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=3.3 Score=41.27 Aligned_cols=237 Identities=16% Similarity=0.151 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTV 343 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 343 (655)
.|.+-|+.|...- ..-..-...|.-..-+.|+.+.|.+.-+..-..- +.-...+.+++...+..|+++.|+++.+.-
T Consensus 138 ~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 138 DARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 6666666665321 1111123334444456788888888777766543 233567788888889999999999988865
Q ss_pred CC-----CChh--HHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCcHHHHHHHHHHcchh
Q 035659 344 KS-----RDVF--VWSTMIAGFAM---YGCGREALDLFSRMQEAKVKPNAVTF-TNVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 344 ~~-----~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
.+ +++. .-..|+.+-+. ..+...|...-.+..+ +.||.+-- .....++.+.|++.++-.+++.+-+
T Consensus 215 ~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK- 291 (531)
T COG3898 215 RAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK- 291 (531)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh-
Confidence 43 3332 22223332221 2345555555555444 56765433 2334578999999999999999864
Q ss_pred cCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 413 YGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 413 ~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
..|.+..+...+ +.+.|+. +++-+++. ..+|| ..+.-.+..+-...|++..|..-.+.+....|. ...
T Consensus 292 --~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~ 364 (531)
T COG3898 292 --AEPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESA 364 (531)
T ss_pred --cCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhH
Confidence 466666554433 4556653 22222221 23455 566677778888999999999999999999984 478
Q ss_pred HHHHHHHHHhc-CCchhHHHHHHHHHh
Q 035659 488 LVLLSNIYAKT-GKWDNVSELRKHMRV 513 (655)
Q Consensus 488 ~~~l~~~~~~~-g~~~~a~~~~~~m~~ 513 (655)
|..|.++-... |+-.++...+-+..+
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 88888887554 888888777665544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.15 Score=42.97 Aligned_cols=78 Identities=21% Similarity=0.369 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcc--------------hhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC--
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQME--------------PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-- 445 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-- 445 (655)
|..++..++.++++.|+++....+.+..- ....+.|+..+..+++.+|+..|++..|+++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34556666666666666666666665432 11133344555555555555555555555554443
Q ss_pred --CCCCChhHHHHHHH
Q 035659 446 --PIVPGASVWGALLG 459 (655)
Q Consensus 446 --~~~p~~~~~~~ll~ 459 (655)
+++-+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 33333445555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.68 Score=43.02 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=36.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchhHHH
Q 035659 457 LLGACKIHENVELAEYACSHLLELEPENH---GALVLLSNIYAKTGKWDNVSE 506 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 506 (655)
+..-|.+.|.+..|..-++.+++.-|+.. .+...++.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 34557888999999999999999888654 355678888889988875443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.11 Score=52.90 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcc----hHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK----HYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
+...++.+..+|.+.|++++|...|+...+ +.|+.. .|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666666666666666666666553 345532 3666666666666666666666654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.61 Score=45.63 Aligned_cols=193 Identities=8% Similarity=0.041 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHH-------hhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCC---HH
Q 035659 318 YLTTSLIDMYTKCGNLDKALEVF-------HTVKSR--DVFVWSTMIAGFAMYGCGREALDLFSRMQE-AKVKPN---AV 384 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~-------~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~ 384 (655)
.++..+.++.++.|.++++...- .+..+. -..+|..+..++-+..++.+++.+-+.-.. .|..|. ..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 34556666777777776664331 111111 124555666666666666666665544332 233331 12
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccC----CcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCh--
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP----GVKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPGA-- 451 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-- 451 (655)
...++-.+....+.++++++.|+...+--.-.. ...+|..|...|++..++++|.-+..+. ++..-.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 233455566667788899988888764311112 2467888999999999988876555443 332111
Q ss_pred ---hHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 452 ---SVWGALLGACKIHENVELAEYACSHLLELE------PENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 452 ---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
.+...|..+++..|....|.+.-+++.++. +-.......++++|...|+.+.|..-++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 223345577889999999988888887753 22334455789999999998888776664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.95 E-value=3.1 Score=38.65 Aligned_cols=216 Identities=19% Similarity=0.155 Sum_probs=148.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHH
Q 035659 295 LGAMDIGVQIHAKMKKQGIK-LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----RDVFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 295 ~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~ 368 (655)
.+....+...+......... ............+...+.+..+...+..... .....+......+...+...++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555555555554322 1356677777788888888888888777542 34456666777777788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHccCcHHHHHHHHHHcchhcCccC----CcchHHHHHHHHHhcCCHHHHHHHHH
Q 035659 369 DLFSRMQEAKVKPNAVTFTNVLC-ACSHSGLVDEGRMFFNQMEPVYGVVP----GVKHYTCMVDMLGRAGLLDEAVEFIE 443 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~y~~li~~~~~~g~~~~A~~~~~ 443 (655)
+.+.........+. ........ .+...|+++.+...+..... ..| ....+......+...++.++|...+.
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 88888877543331 22222222 67888999999999988743 233 23334444445667888999998888
Q ss_pred hC-CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 444 KM-PIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 444 ~m-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+. ...++ ...+..+...+...++.+.|...+.......|.....+..+...+...|.++++...+......
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76 33333 5677888888888889999999999999988875566667777777777788888887776654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.27 Score=40.59 Aligned_cols=89 Identities=24% Similarity=0.193 Sum_probs=70.1
Q ss_pred HHHhcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-CCC---cchHHHHHHHHHhcCCc
Q 035659 428 MLGRAGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHENVELAEYACSHLLELE-PEN---HGALVLLSNIYAKTGKW 501 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 501 (655)
++...|+++.|++.|.+. .+- .....||.-..+++-.|+.++|+.-+++++++. |.. ..+|..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567788889998888775 222 357788999999999999999999999999875 332 23577778888899999
Q ss_pred hhHHHHHHHHHhCCC
Q 035659 502 DNVSELRKHMRVSGL 516 (655)
Q Consensus 502 ~~a~~~~~~m~~~g~ 516 (655)
+.|..=|+..-+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999988888877664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.85 E-value=3.9 Score=41.38 Aligned_cols=96 Identities=13% Similarity=-0.019 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---C----eeHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 035659 179 SLIHFYAICGDLAMAYCVFVMIGKK---D----VVSWNSMISGFVQ---GGFFEKAIELYREMEMENVKPDEVTMVAVLS 248 (655)
Q Consensus 179 ~li~~~~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (655)
.++-.|-...+++.-.++++.+... + ...--...-++.+ .|+.++|++++..+......++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4445688888899999999888763 1 1112234455566 7899999999999777777888888888877
Q ss_pred HHhccCc---cccCCChHHHHHHHHHHHH
Q 035659 249 ACAKKRD---LEFGRWPNEALSIFHELQL 274 (655)
Q Consensus 249 ~~~~~~~---~~~~~~~~~A~~l~~~m~~ 274 (655)
.|-..-. .......++|+..|.+--.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 6643211 1111114466666665543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.17 Score=47.66 Aligned_cols=63 Identities=17% Similarity=0.123 Sum_probs=48.1
Q ss_pred HHHHHHhhcC--CCCeeHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC
Q 035659 192 MAYCVFVMIG--KKDVVSWNSMISGFVQG-----GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254 (655)
Q Consensus 192 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 254 (655)
..++.|...+ ++|-.+|-+++..|... +..+=....++.|.+-|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk 121 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK 121 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc
Confidence 3455666666 57888888888887654 456666677889999999999999999998776543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.3 Score=41.23 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=22.3
Q ss_pred HHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHH
Q 035659 390 LCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 390 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~ 437 (655)
..-|.+.|.+..|..-++.+.+.|.-.+. ......++.+|.+.|..+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 34455555555555555555554321111 2234455555555555553
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.64 E-value=6 Score=45.27 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=15.4
Q ss_pred HHHHHHHHhCC--ChhHHHHHHHHHHH
Q 035659 209 NSMISGFVQGG--FFEKAIELYREMEM 233 (655)
Q Consensus 209 ~~li~~~~~~g--~~~~A~~~~~~m~~ 233 (655)
-.+|..|++.+ ..++|+....+...
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 35667777766 55666666655553
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.52 E-value=3.2 Score=36.72 Aligned_cols=120 Identities=14% Similarity=0.178 Sum_probs=62.9
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC--CHHHHH
Q 035659 225 IELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG--AMDIGV 302 (655)
Q Consensus 225 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g--~~~~a~ 302 (655)
++.++.+.+.+++|+...+..+++.+.+.|... .+.++...+ +-+|.......+-.+.... -...|.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----------~L~qllq~~-Vi~DSk~lA~~LLs~~~~~~~~~Ql~l 82 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----------QLHQLLQYH-VIPDSKPLACQLLSLGNQYPPAYQLGL 82 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHhhc-ccCCcHHHHHHHHHhHccChHHHHHHH
Confidence 345566667778888888888888888887755 455555555 6666665554443332211 122222
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 035659 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGC 363 (655)
Q Consensus 303 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 363 (655)
+++.++.. .+..+++.+...|++-+|.++.+.....+...-..++.+-.+.++
T Consensus 83 DMLkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D 135 (167)
T PF07035_consen 83 DMLKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSND 135 (167)
T ss_pred HHHHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCC
Confidence 22222221 233445555566666666666555433333333333444333333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.46 E-value=6.6 Score=40.10 Aligned_cols=369 Identities=13% Similarity=0.055 Sum_probs=181.9
Q ss_pred cCCCCChHHHHHHhhcCCC------------------CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhc---CCCCCCcc
Q 035659 82 LGTFSSLEYAREMFDQIPQ------------------PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYN---SPYFPNEF 140 (655)
Q Consensus 82 ~~g~~~~~~A~~~f~~~~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~pd~~ 140 (655)
+.+ .++.|.+.|..-.. +|-.-=+..+..+...|++.++..++++|..+ +....|..
T Consensus 91 ~~k--~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 91 KQK--EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred Hhh--hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 445 78888887754321 12222355677888999999999999888322 22346788
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhC-
Q 035659 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDL-FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQG- 218 (655)
Q Consensus 141 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~- 218 (655)
+|+.++-.+++ ..+-++.+.. ..|. .-|--++-.|.+.=..-++...-.-. |......+++.-..-.
T Consensus 169 ~yd~~vlmlsr--------SYfLEl~e~~-s~dl~pdyYemilfY~kki~~~d~~~Y~k~~--peeeL~s~imqhlfi~p 237 (549)
T PF07079_consen 169 MYDRAVLMLSR--------SYFLELKESM-SSDLYPDYYEMILFYLKKIHAFDQRPYEKFI--PEEELFSTIMQHLFIVP 237 (549)
T ss_pred HHHHHHHHHhH--------HHHHHHHHhc-ccccChHHHHHHHHHHHHHHHHhhchHHhhC--cHHHHHHHHHHHHHhCC
Confidence 88876554443 3333333322 1221 12344455554432111111100000 1111111111111110
Q ss_pred -CChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCC----CHHHHHHHHHHH
Q 035659 219 -GFFEKAIELYREMEMENVKPDEV-TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP----DEFTFVSVLSAC 292 (655)
Q Consensus 219 -g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p----~~~t~~~ll~~~ 292 (655)
.+..--+++++.-...-+.|+-. ....+...+.+ + ++++..+-+.+.... +.+ =..+|..++..+
T Consensus 238 ~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~------~e~~~~~ce~ia~~~-i~~Lke~li~~F~~~Ls~~ 308 (549)
T PF07079_consen 238 KERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--D------PEQVGHFCEAIASSK-IEKLKEELIDRFGNLLSFK 308 (549)
T ss_pred HhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--C------hHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH
Confidence 11111222222223333445432 22333333333 1 123433333332211 111 134788888888
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchhhHH-------HHHHHHHh----cCCHHHHHHHHhhcCCCChh-----HHHH-HH
Q 035659 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTT-------SLIDMYTK----CGNLDKALEVFHTVKSRDVF-----VWST-MI 355 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-------~li~~~~~----~g~~~~A~~~~~~~~~~~~~-----~~~~-li 355 (655)
.+.++...|.+.+..+.-. .|+..+.. .|.++.+. .-++.+=..+++.+...|+. .|-. -.
T Consensus 309 Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~A 386 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGA 386 (549)
T ss_pred HHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 8999999999888877663 34333222 23333331 11233344555555544432 1111 12
Q ss_pred HHHHHcCC-hHHHHHHHHHHHHcCCCCC-HH----HHHHHHHHHHc---cCcHHHHHHHHHHcchhcCccCC----cchH
Q 035659 356 AGFAMYGC-GREALDLFSRMQEAKVKPN-AV----TFTNVLCACSH---SGLVDEGRMFFNQMEPVYGVVPG----VKHY 422 (655)
Q Consensus 356 ~~~~~~g~-~~~A~~~~~~m~~~g~~p~-~~----t~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~----~~~y 422 (655)
.-+-+.|. -++|+++++...+ +.|. .. ++..+=.+|.. ...+.+-..+-+-+.+. |+.|- ...-
T Consensus 387 k~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~-gl~~i~i~e~eia 463 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV-GLTPITISEEEIA 463 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCcccccHHHHH
Confidence 23445555 6788888888776 3332 22 22222223322 23455555555555444 77663 3455
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 423 TCMVDM--LGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 423 ~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
|.|.++ +...|++.++.-.-.-+ .+.|++.++.-++-......++++|..++..+
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 666654 45678888775432222 45678888888888888888888888777654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.25 E-value=3 Score=35.92 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 035659 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330 (655)
Q Consensus 287 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 330 (655)
.++..+...+.......+++.+.+.+ ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44555555555666666666655554 24455555555555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.33 Score=45.96 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=33.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 457 LLGACKIHENVELAEYACSHLLELEPE---NHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
|..++...|+++.|...|..+.+-.|+ -+.++.-|+.+..+.|+.++|..+++.+.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555666666666666666666654433 334555666666666666666666666554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.096 Score=32.25 Aligned_cols=32 Identities=25% Similarity=0.152 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888888899999999999999988885
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.13 Score=44.86 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CeeHHHHHHHHHHhCCChhHHHHHHHHHH-----HCCCCCCHhhH
Q 035659 176 ISNSLIHFYAICGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVQGGFFEKAIELYREME-----MENVKPDEVTM 243 (655)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t~ 243 (655)
+...++..+...|++++|..+.+.+.. | |...|..+|.+|...|+..+|++.|+++. +.|+.|+..|-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 456677888889999999999988765 3 66789999999999999999999998874 34888887653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.47 Score=47.38 Aligned_cols=138 Identities=16% Similarity=0.029 Sum_probs=95.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCC
Q 035659 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~ 434 (655)
.+.|.+.|++..|...|++.... |. +...-+.++...... .-...+..|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 35677778888888887776542 00 111111122222111 112356677788889999
Q ss_pred HHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH-HHHHHHH
Q 035659 435 LDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV-SELRKHM 511 (655)
Q Consensus 435 ~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 511 (655)
+.+|++.-++. .. .+|+-..-.=..+|...|+++.|+..|+++++++|.|-.+-..|+.+-.+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887775 33 345666666778899999999999999999999999988888888887777666554 7788888
Q ss_pred HhC
Q 035659 512 RVS 514 (655)
Q Consensus 512 ~~~ 514 (655)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.36 Score=45.50 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=79.1
Q ss_pred HHHHHHhhcC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------
Q 035659 335 KALEVFHTVK--SRDVFVWSTMIAGFAMY-----GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG---------- 397 (655)
Q Consensus 335 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 397 (655)
..++.|..+. ++|-.+|-+++..|..+ +..+=....++.|.+-|+.-|..+|..||..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455677666 67888888888888764 455666677899999999999999999998875543
Q ss_pred ------cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCH
Q 035659 398 ------LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435 (655)
Q Consensus 398 ------~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 435 (655)
.-+=++.++++|... |+.||-++-..|++++++.|..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 224478899999775 9999999999999999998863
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.94 E-value=5.2 Score=38.56 Aligned_cols=144 Identities=15% Similarity=0.065 Sum_probs=76.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCH
Q 035659 356 AGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435 (655)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 435 (655)
......|+..+|..+|+........ +...-..+..++...|+.+.|..++..+-.. --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3455667777777777777664222 2344445666777777777777777776432 1011111112223444444444
Q ss_pred HHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCcchHHHHHHHHHhcCCc
Q 035659 436 DEAVEFIEKMPIVP-GASVWGALLGACKIHENVELAEYACSHLLELE--PENHGALVLLSNIYAKTGKW 501 (655)
Q Consensus 436 ~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~ 501 (655)
.+..++-.+..-.| |...-..+...+...|+.+.|.+.+=.+++.+ -.+...-..|+..+.-.|.-
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 44444444442334 34444555566666666666666655555543 33445555555555555533
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.15 Score=31.27 Aligned_cols=33 Identities=33% Similarity=0.262 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777888888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.43 E-value=1.1 Score=46.90 Aligned_cols=130 Identities=19% Similarity=0.235 Sum_probs=67.6
Q ss_pred HHcCChHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHH
Q 035659 359 AMYGCGREALDLFS--RMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 359 ~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 436 (655)
...++++++.++.+ ++.. .+ +..-...++.-+.+.|..+.|+++-..-. .-.+...++|+++
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLD 335 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HH
T ss_pred HHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHH
Confidence 34556666555554 1111 11 13335556666666677777665543322 1234455677777
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 437 EAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 437 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.|.++.++.. +...|..|.......|+++.|++.+++.. -+..|+-.|...|+.+.-.++-+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7776666553 56677777777777777777777777653 34455666666666665555555554444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.38 E-value=3.8 Score=43.55 Aligned_cols=159 Identities=18% Similarity=0.140 Sum_probs=93.9
Q ss_pred HHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH-----HHHHHHHHHhc----cCCHHHHHHHHHHHHHcCC
Q 035659 243 MVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF-----TFVSVLSACAQ----LGAMDIGVQIHAKMKKQGI 313 (655)
Q Consensus 243 ~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~-----t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~ 313 (655)
+..++....-.|+.+ .+++++.+..+.+++.-... +|..++..++. ..+.+.+.+++..+.+.
T Consensus 191 ~~kll~~vGF~gdR~------~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-- 262 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRE------LGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-- 262 (468)
T ss_pred HHHHHhhcCcCCcHH------HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--
Confidence 455666666777765 88888887766554443322 24444444333 45678888888888875
Q ss_pred CCchhhHHH-HHHHHHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 035659 314 KLNCYLTTS-LIDMYTKCGNLDKALEVFHTVKSR-------DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVT 385 (655)
Q Consensus 314 ~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 385 (655)
-|+...|.- -.+.+...|++++|.+.|+..... ....+--+.-.+.-..++++|.+.|.++.+.. .-...+
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~ 341 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAF 341 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHH
Confidence 255444433 345666788888888888865431 12233334445666778888888888887743 223444
Q ss_pred HHHHHHH-HHccCcH-------HHHHHHHHHcc
Q 035659 386 FTNVLCA-CSHSGLV-------DEGRMFFNQME 410 (655)
Q Consensus 386 ~~~ll~a-~~~~g~~-------~~a~~~~~~~~ 410 (655)
|..+..+ +...|+. ++|.++|.++.
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 4444333 2334555 55666665543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.6 Score=37.32 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=38.9
Q ss_pred HHhcCCHHHHHHHHHhC----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 429 LGRAGLLDEAVEFIEKM----PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
..+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++.+++.|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34567777777777766 2222 2344556777788888888888888888888776643
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.29 E-value=4.9 Score=34.58 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=17.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035659 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395 (655)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 395 (655)
++..+.+.+.......+++.+...+. .+....+.++..+++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 34444444444444444444444431 333344444444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=2.7 Score=43.23 Aligned_cols=142 Identities=16% Similarity=0.138 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHH---------ccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhc
Q 035659 364 GREALDLFSRMQE-AKVKPNAV-TFTNVLCACS---------HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432 (655)
Q Consensus 364 ~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 432 (655)
.+.|+.+|.+... +.+.|+.. .|..+..++. ......+|.++-....+. -.-|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 4577888888872 23566543 3333322211 122345555665555532 122455555666666677
Q ss_pred CCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH--HHHHHHHhcCCchhHHHHH
Q 035659 433 GLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALV--LLSNIYAKTGKWDNVSELR 508 (655)
Q Consensus 433 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~~ 508 (655)
|+++.|..+|++. ...|| ..+|......+.-.|+.++|.+.+++.++++|....+-. ..+++|... ..++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 7788888888776 45565 456666666667778888888888888888876543322 223344433 345555554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.26 E-value=2.8 Score=43.95 Aligned_cols=157 Identities=12% Similarity=0.082 Sum_probs=88.2
Q ss_pred HHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 035659 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL 190 (655)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 190 (655)
...+-+++++++..+...-.....+ | ......++.-+-+.|..+.|.++-. |. ..-.+...++|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCH
Confidence 3445567888876666521011112 2 3446777777788888888877632 32 2345666789999
Q ss_pred HHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHH
Q 035659 191 AMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFH 270 (655)
Q Consensus 191 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~ 270 (655)
+.|.++.++.. +...|..|.....+.|+++-|.+.|++..+ |..|+-.|.-.|+.+ .-.++.+
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~------~L~kl~~ 397 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDRE------KLSKLAK 397 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HH------HHHHHHH
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHH------HHHHHHH
Confidence 99998876665 556899999999999999999988887653 555555666666643 3334444
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 035659 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIH 305 (655)
Q Consensus 271 ~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 305 (655)
.....| -++....++.-.|+.++..+++
T Consensus 398 ~a~~~~-------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 398 IAEERG-------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHTT--------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHcc-------CHHHHHHHHHHcCCHHHHHHHH
Confidence 444333 2334444444445555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.1 Score=45.87 Aligned_cols=116 Identities=5% Similarity=0.006 Sum_probs=86.4
Q ss_pred cHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHh---------cCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcC
Q 035659 398 LVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGR---------AGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHE 465 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~---------~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g 465 (655)
..+.|..+|.+......++|+ ...|..+...+.. .....+|.++.++. .+. -|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 457788889888754456776 3445444433321 22345566666554 333 35677777777788888
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
+++.|...|+++..++|+...+|...+....-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999887544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.2 Score=41.04 Aligned_cols=122 Identities=11% Similarity=0.059 Sum_probs=87.5
Q ss_pred HHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHH---HHHHHHhcCCH
Q 035659 391 CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGA---LLGACKIHENV 467 (655)
Q Consensus 391 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~ 467 (655)
......|++.++...|...... ..-+...-..|...|...|+.+.|..++..+|.+-...-|.. -+..+.+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3467789999999999988753 223356677888999999999999999999975544444443 22233333333
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 468 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.+... +++-...+|+|...-..|+..|...|+.++|.+.+-.+.++.
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 32222 233345689999999999999999999999998877776653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.75 E-value=3.4 Score=40.25 Aligned_cols=112 Identities=11% Similarity=0.077 Sum_probs=50.0
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHccCcHHHHH
Q 035659 331 GNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFT----NVLCACSHSGLVDEGR 403 (655)
Q Consensus 331 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~ 403 (655)
|+.-+|-..++++.+ .|..+|+--=.+|..+|+.+.-...+++.... ..||...|. .+.-++...|-+++|+
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 444444444444432 24555555555555555555555555555443 223322211 1112234455555555
Q ss_pred HHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
+.-++..+. ...|.-.-.++...+.-.|++.++.++..+-
T Consensus 196 k~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555544421 1112223334444455555555555555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.43 E-value=5.7 Score=33.21 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=50.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-C--------------------hhHH
Q 035659 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-D--------------------VFVW 351 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~--------------------~~~~ 351 (655)
.-.|.++++.++..+...+. +..-+|.+|--....-+-+...++++.+-+- | ....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~v 89 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYV 89 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHH
Confidence 34578888888888887743 2333333332222223333344444443321 1 1222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchh
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
...+..+...|+-++-.+++.++.. +-++++.....+..||.+.|+..++.+++.++.+.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3334444444555544455544443 22444444455555555555555555555555443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.16 E-value=3.9 Score=34.95 Aligned_cols=113 Identities=11% Similarity=0.030 Sum_probs=56.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcC
Q 035659 356 AGFAMYGCGREALDLFSRMQEAKVK--PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433 (655)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g 433 (655)
....+.|++++|.+.|+.+...-.. -....-..++.++.+.+++++|...++..++.+.-.|+ ..|...+.+++.-.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 3344566666666666666654111 12234445566666666666666666666654333332 23444444433322
Q ss_pred CHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 434 LLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 434 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
..+. .++.+ ...-| .+....|...|+++++.-|++.
T Consensus 97 ~~~~---~~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEG---SLQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred Hhhh---HHhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 2211 11111 11111 1235677888888888888654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.97 E-value=2.7 Score=43.37 Aligned_cols=148 Identities=14% Similarity=0.040 Sum_probs=82.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHH
Q 035659 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 440 (655)
..+...-+++-++..+ +.||..+...++ +-.....+.+++++|++..+. +- ..+..- ......|. ..+
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg~s-~~~~~~g~---~~e 248 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLGKS-QFLQHHGH---FWE 248 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhchh-hhhhcccc---hhh
Confidence 3444555555555555 556654443333 334455678888888876653 10 000000 00001111 111
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 035659 441 FIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE--NHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKK 518 (655)
Q Consensus 441 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 518 (655)
.+..-..+|-..+-..|...+++.|+.++|.+.++.+++..|. +......|++.+...+++.++..++.+-.+..+++
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 1111111222334455777778888888888888888877654 44567778888888888888888888776544444
Q ss_pred CC
Q 035659 519 EP 520 (655)
Q Consensus 519 ~~ 520 (655)
..
T Consensus 329 SA 330 (539)
T PF04184_consen 329 SA 330 (539)
T ss_pred hH
Confidence 43
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.93 E-value=5.1 Score=42.60 Aligned_cols=115 Identities=15% Similarity=0.077 Sum_probs=71.4
Q ss_pred cCcHHHHHHHHHHcchhcCccCCcchHHHH-HHHHHhcCCHHHHHHHHHhCC-CC-----CChhHHHHHHHHHHhcCCHH
Q 035659 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCM-VDMLGRAGLLDEAVEFIEKMP-IV-----PGASVWGALLGACKIHENVE 468 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~p~~~~y~~l-i~~~~~~g~~~~A~~~~~~m~-~~-----p~~~~~~~ll~~~~~~g~~~ 468 (655)
....+.+.++++.+.+. -|+...|... ...+...|++++|++.|++.- .+ -....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566677777777654 3554444332 234556677777777777541 01 11233444555667788899
Q ss_pred HHHHHHHHHhccCCCCcchHHH-HHHHHHhcCCc-------hhHHHHHHHHHh
Q 035659 469 LAEYACSHLLELEPENHGALVL-LSNIYAKTGKW-------DNVSELRKHMRV 513 (655)
Q Consensus 469 ~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~-------~~a~~~~~~m~~ 513 (655)
+|...+.++.+...-+...|.. .+-++...|+. ++|.+++.+...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999998877655555554 44455677888 777777776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.4 Score=41.76 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=57.0
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-hhHHHHHHH
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG-ASVWGALLG 459 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~ 459 (655)
|+..+. +.+.|++..|.+-|...++.|.-.+ ....+--|...+...|++++|..+|..+ |-.|. +...--|..
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 444333 3445666666666666665432111 1234445666666677777776666555 22222 244555556
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
.....|+.++|...++++.+.-|....
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 666777777777777777777776543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.85 E-value=5.1 Score=40.72 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=102.9
Q ss_pred cchHHHHHHHHHhCCCcHHHHHHHHHhhhcCC-CCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 035659 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSP-YFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181 (655)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 181 (655)
...|...|..-.+..-.+.|..+|-.. +..+ +.++.+.+++.+.-++ .|+...|..+|+.-++. ++.+..--+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~-rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKL-RKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHH-hccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHH
Confidence 345788888888877888899999988 7777 5678888888887655 47778888888875554 233333445677
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC---C--eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHh
Q 035659 182 HFYAICGDLAMAYCVFVMIGKK---D--VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACA 251 (655)
Q Consensus 182 ~~~~~~g~~~~A~~~f~~~~~~---~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 251 (655)
..+.+.++-+.|+.+|+...++ + ...|..||..=..-|+...+..+=+.|.+. .|...+-....+-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 7888889999999999855442 2 356888888888888888888877777653 444444444444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.73 E-value=11 Score=35.15 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhh
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHT 342 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~ 342 (655)
+-+.|-.|.-..++..|.+.++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcc
Confidence 33444444445566666666665
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.7 Score=42.20 Aligned_cols=159 Identities=10% Similarity=0.013 Sum_probs=118.2
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH----HHHhcCCH
Q 035659 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD----MLGRAGLL 435 (655)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~----~~~~~g~~ 435 (655)
-+|+..+|...++++.+. .+.|-..+...=.+|...|+.+.-...++.+.. ...+|...|..+=. ++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999875 556778888888899999999999999999875 34677655544433 44589999
Q ss_pred HHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 436 DEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPE----NHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 436 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
++|++.-++. .+.| |.-.-.++.......|+..++.++..+-...-.. -...|...+-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999886 5444 3455567777888999999999987775543221 23456667777888899999999998
Q ss_pred HHHhCCCccCCc
Q 035659 510 HMRVSGLKKEPG 521 (655)
Q Consensus 510 ~m~~~g~~~~~~ 521 (655)
.-.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765555555444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.04 E-value=13 Score=34.36 Aligned_cols=215 Identities=19% Similarity=0.145 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHCCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 035659 264 EALSIFHELQLSKNVN-PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-GIKLNCYLTTSLIDMYTKCGNLDKALEVFH 341 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 341 (655)
.+...+....... .. .....+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.
T Consensus 41 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
T COG0457 41 EALELLEEALELL-PNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119 (291)
T ss_pred HHHHHHHHHHhcC-ccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4445555554432 11 12466677777778888888888887777653 234556667777777788888888888888
Q ss_pred hcCCC--C-hhHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCcHHHHHHHHHHcchhc
Q 035659 342 TVKSR--D-VFVWSTMIA-GFAMYGCGREALDLFSRMQEAKVKP----NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY 413 (655)
Q Consensus 342 ~~~~~--~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 413 (655)
..... + ......... .+...|+.++|...|.+... ..| ....+......+...++.+.+...+......
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 196 (291)
T COG0457 120 KALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL- 196 (291)
T ss_pred HHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-
Confidence 77652 2 223333334 78889999999999999855 333 3334444444467788999999999998753
Q ss_pred CccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 414 GVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 414 ~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
... ....+..+...+...+.+++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 -NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 222 3677888888899999999999998886 33444 455566666666777899999999999999886
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.95 E-value=9.9 Score=39.50 Aligned_cols=98 Identities=13% Similarity=0.160 Sum_probs=67.4
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCC--hhHHHHHHHHHH
Q 035659 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP-I-VPG--ASVWGALLGACK 462 (655)
Q Consensus 387 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~ll~~~~ 462 (655)
..+..++-+.|+.++|.+.|.+|.+.+...-...+...|+..|...+.+.++..++.+-. + -|. ...|+..+--.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 456667778999999999999998653332345567789999999999999999998873 1 233 345665554444
Q ss_pred hcCC---------------HHHHHHHHHHHhccCCCC
Q 035659 463 IHEN---------------VELAEYACSHLLELEPEN 484 (655)
Q Consensus 463 ~~g~---------------~~~a~~~~~~~~~~~p~~ 484 (655)
..++ -..|.+++.++.+.+|.-
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 3333 123567788888877643
|
The molecular function of this protein is uncertain. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.83 E-value=18 Score=35.72 Aligned_cols=127 Identities=17% Similarity=0.260 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh--cC----CHHHHHHHHhhcCCC-------ChhHHHHHHHHHHHcCC-
Q 035659 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK--CG----NLDKALEVFHTVKSR-------DVFVWSTMIAGFAMYGC- 363 (655)
Q Consensus 298 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~- 363 (655)
+++...+++.+.+.|+..+..+|-+-.-.... .. ....|..+|+.|++. +-..+.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55677889999999999888777664433333 22 356788999999863 34455555544 2222
Q ss_pred ---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcc-Cc--HHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 364 ---GREALDLFSRMQEAKVKPN-AVTFTNVLCACSHS-GL--VDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 364 ---~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~-g~--~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
.+.+..+|+.+.+.|...+ ...+.+-+-++... .. +.++.++++.+.+. ++++...+|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 3567788888888777664 33444444343332 22 45778888888886 89988888776654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.4 Score=36.52 Aligned_cols=88 Identities=15% Similarity=0.062 Sum_probs=48.8
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCh---hHHHHHHHHHHhcC
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPGA---SVWGALLGACKIHE 465 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~~---~~~~~ll~~~~~~g 465 (655)
.+..|+++.|++.|.+.... ..-+...||.-..+|.-.|+.++|++=+++. +-+ .. ..|-.-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 45556666666666665531 1223455666666666666666666555553 111 11 12222234467777
Q ss_pred CHHHHHHHHHHHhccCCC
Q 035659 466 NVELAEYACSHLLELEPE 483 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~ 483 (655)
+.+.|..-|+.+-+++.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777777776643
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.95 Score=40.57 Aligned_cols=88 Identities=24% Similarity=0.223 Sum_probs=67.2
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 035659 428 MLGRAGLLDEAVEFIEKM-PIVPG------ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 500 (655)
-+...|++++|..-|... ..-|. .+.|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777776654 11121 23445555667888999999999999999999888888888899999999
Q ss_pred chhHHHHHHHHHhCC
Q 035659 501 WDNVSELRKHMRVSG 515 (655)
Q Consensus 501 ~~~a~~~~~~m~~~g 515 (655)
+++|++=++.+.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999888754
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.18 E-value=17 Score=34.43 Aligned_cols=58 Identities=19% Similarity=0.132 Sum_probs=45.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 457 LLGACKIHENVELAEYACSHLLELEPENH---GALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+..-|.+.|.+..|..-++.+++.-|+.. .++..+.++|...|..++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 34568899999999999999998765443 45667888999999999999887766553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=7.1 Score=34.27 Aligned_cols=83 Identities=10% Similarity=-0.067 Sum_probs=33.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHH
Q 035659 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439 (655)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 439 (655)
+.|++++|..+|+-+...+.. |..-+..|..+|-..+.+++|...|...... + .-|+..+--....|...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHHH
Confidence 344444555444444332111 2222333333344444555555554443321 1 112222223344444455555555
Q ss_pred HHHHhC
Q 035659 440 EFIEKM 445 (655)
Q Consensus 440 ~~~~~m 445 (655)
..|+..
T Consensus 126 ~~f~~a 131 (165)
T PRK15331 126 QCFELV 131 (165)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.53 Score=28.78 Aligned_cols=31 Identities=23% Similarity=0.130 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888887773
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.04 E-value=20 Score=35.09 Aligned_cols=59 Identities=12% Similarity=-0.005 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHhhcCC--CC-eeHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 035659 176 ISNSLIHFYAICGDLA---MAYCVFVMIGK--KD-VVSWNSMISGFVQGGFFEKAIELYREMEME 234 (655)
Q Consensus 176 ~~~~li~~~~~~g~~~---~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (655)
+...|+.+|...+..+ +|.++++.+.. ++ ...+-.-+..+.+.++.+++.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666665543 34444444422 23 334434455555566677777777777654
|
It is also involved in sporulation []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.98 E-value=10 Score=35.27 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHhC-----CCCCChhHHHHHHHH---HHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 433 GLLDEAVEFIEKM-----PIVPGASVWGALLGA---CKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 433 g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.+++.|+..|+.. +.+.+...-..++.. -...+++.+|+.+|+++.....+|.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4555555555554 122233333444433 3567889999999999887665443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.57 Score=29.29 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 487 ALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888743
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.62 E-value=16 Score=36.00 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--cC----CHHHHHHHHhhcCC
Q 035659 155 FRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI--CG----DLAMAYCVFVMIGK 202 (655)
Q Consensus 155 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~f~~~~~ 202 (655)
++....+++.+.+.|+..+..+|-+..-.... .. ....|..+|+.|++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk 131 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK 131 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 34556677778888877777665543333322 11 13345555555543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.20 E-value=17 Score=40.14 Aligned_cols=179 Identities=16% Similarity=0.100 Sum_probs=110.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN--CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMY 361 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 361 (655)
+...-|+.+.+...++.|..+-+ ..+..++ ........+-+.+.|++++|...|-+....-.. ..+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 44556666677777777766543 3333332 123333444555788999988777654321111 2345666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHH
Q 035659 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEF 441 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~ 441 (655)
.+..+-..+++.+.+.|+.- ...-+.|+.+|.+.++.+.-.++.+...+ |.. ..-....+..+.+.+-+++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCC--cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 67777778888888887653 33345688889999998888777766542 221 11244567777888888888888
Q ss_pred HHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 442 IEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 442 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
-.+.+. +......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 777643 333333333 4467888888876654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.12 E-value=18 Score=33.23 Aligned_cols=162 Identities=14% Similarity=0.035 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
...||-+.--+...|+++.|.+.|+...+....-+....+. .-++.-.|++.-|.+=|...-..-.-.|=...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 34666666667777777777777777776432222222222 2234456777777665554432212222222232222
Q ss_pred HHHhcCCHHHHHHHH-HhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------cchHHHHHHHHHhcC
Q 035659 428 MLGRAGLLDEAVEFI-EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN-------HGALVLLSNIYAKTG 499 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 499 (655)
.+.-+..+|..-+ ++.. ..|..-|...|..+.--.=.+ +.+++++.+-..++ ..+|..|+.-|...|
T Consensus 177 --E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 1233455555433 3331 235556666555543222111 12333333322222 468899999999999
Q ss_pred CchhHHHHHHHHHhCCC
Q 035659 500 KWDNVSELRKHMRVSGL 516 (655)
Q Consensus 500 ~~~~a~~~~~~m~~~g~ 516 (655)
..++|..+|+......+
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999998776543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.80 E-value=2 Score=41.42 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.++..++..+...|+.+.+...++++++.+|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45566777777888888888888888888888888888888888888888888888887766
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.74 Score=28.77 Aligned_cols=28 Identities=18% Similarity=0.039 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLEL 480 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 480 (655)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667778888888888888888885543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.56 E-value=2.6 Score=40.72 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CeeHHHHHHHHHHhCCChhHHHHHHHHHHH-----CCCCCCHhhHHH
Q 035659 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKK---DVVSWNSMISGFVQGGFFEKAIELYREMEM-----ENVKPDEVTMVA 245 (655)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 245 (655)
..++..++..+..+|+.+.+...++++... |...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 346777889999999999999999888763 677999999999999999999999998865 588888877666
Q ss_pred HHHH
Q 035659 246 VLSA 249 (655)
Q Consensus 246 ll~~ 249 (655)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.53 E-value=26 Score=34.32 Aligned_cols=98 Identities=6% Similarity=-0.017 Sum_probs=48.5
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMD---IGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAG 357 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 357 (655)
++..++.++...+..+ +|..+++.+.... +-.+.++-.-++.+.+.++.+.+.+++.+|... ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4555666666655443 4444555553322 222444444555566667777777777666532 22334444443
Q ss_pred H---HHcCChHHHHHHHHHHHHcCCCCCH
Q 035659 358 F---AMYGCGREALDLFSRMQEAKVKPNA 383 (655)
Q Consensus 358 ~---~~~g~~~~A~~~~~~m~~~g~~p~~ 383 (655)
+ ... ....|...+..+....+.|..
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 3 222 234555555555544444443
|
It is also involved in sporulation []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.47 E-value=55 Score=38.01 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=21.5
Q ss_pred CCChhHHHHHHHHHHhcC--CHHHHHHHHhhcC
Q 035659 171 EDDLFISNSLIHFYAICG--DLAMAYCVFVMIG 201 (655)
Q Consensus 171 ~~~~~~~~~li~~~~~~g--~~~~A~~~f~~~~ 201 (655)
.|+ .-.-.+|..|++.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 455 45567889999888 7778877766554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.47 E-value=7 Score=34.41 Aligned_cols=51 Identities=18% Similarity=0.020 Sum_probs=25.9
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 035659 429 LGRAGLLDEAVEFIEKMPIVPG---ASVWGALLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
+...|.+++...-.+.+....+ ...-..|.-+-.+.|++..|.+.|.++..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445556655555555421112 12233444555566666666666666554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.30 E-value=14 Score=32.38 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=52.5
Q ss_pred HHHccCcHHHHHHHHHHcchhcCccCCcch-HHHHHHHHHhcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHH
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKH-YTCMVDMLGRAGLLDEAVEFIEKMP-IVPGASVWGALLGACKIHENVEL 469 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-y~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~ 469 (655)
.-...++.+++..++..+. -+.|.... -..-...+.+.|++.+|..+|+++. -.|....-..|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3456678888888888775 44565322 2223344677888888888888873 23344444566666655544444
Q ss_pred HHHHHHHHhccCC
Q 035659 470 AEYACSHLLELEP 482 (655)
Q Consensus 470 a~~~~~~~~~~~p 482 (655)
=....+++++.++
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 4455555665554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.15 E-value=46 Score=36.72 Aligned_cols=166 Identities=14% Similarity=0.177 Sum_probs=93.4
Q ss_pred HccCCchHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHH
Q 035659 150 ARLVQFRVGQAIHGMVIKSSFED---DLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226 (655)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 226 (655)
.+.+.+++|..+-+... |..+ -..++..+|+-+.-.|++++|-...-.|-..+..-|.-.+.-+...++......
T Consensus 367 l~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence 34444555554433322 2233 345677888888888899988888888888888888888888887777655433
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 035659 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306 (655)
Q Consensus 227 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 306 (655)
+ +.......+...|..+|..+.. .+. .-|.+.... ++++...-..++++- ..
T Consensus 445 ~---lPt~~~rL~p~vYemvLve~L~-~~~----------~~F~e~i~~--Wp~~Lys~l~iisa~------------~~ 496 (846)
T KOG2066|consen 445 Y---LPTGPPRLKPLVYEMVLVEFLA-SDV----------KGFLELIKE--WPGHLYSVLTIISAT------------EP 496 (846)
T ss_pred c---CCCCCcccCchHHHHHHHHHHH-HHH----------HHHHHHHHh--CChhhhhhhHHHhhc------------ch
Confidence 2 3332223455667777777766 221 123333332 344333333332221 11
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 035659 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347 (655)
Q Consensus 307 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 347 (655)
+..+. ..+..+-..|+..|...+++++|.+.+-...+++
T Consensus 497 q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 497 QIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred HHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 11111 1112233337777888888888888777766654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.87 E-value=48 Score=36.59 Aligned_cols=69 Identities=14% Similarity=0.324 Sum_probs=41.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 465 (655)
....+..|.+.|-++|-.-++..|- .++.+|.-.--+.+++++|.++.++- .|...|..||.-+...-
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AIefvKeq---~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAIEFVKEQ---DDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHHHHHHhc---CCHHHHHHHHHHhhcCc
Confidence 3445555666666666666666652 13344444444566677777776653 47788888887765544
Q ss_pred C
Q 035659 466 N 466 (655)
Q Consensus 466 ~ 466 (655)
.
T Consensus 705 e 705 (846)
T KOG2066|consen 705 E 705 (846)
T ss_pred H
Confidence 3
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.22 E-value=41 Score=35.11 Aligned_cols=96 Identities=11% Similarity=0.151 Sum_probs=44.1
Q ss_pred CCCHHHHH-HHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH---HHhcCCHHHHHHHHHhC--CCCCChhH
Q 035659 380 KPNAVTFT-NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM---LGRAGLLDEAVEFIEKM--PIVPGASV 453 (655)
Q Consensus 380 ~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~---~~~~g~~~~A~~~~~~m--~~~p~~~~ 453 (655)
.|+..|+. .++.-+...|...+|...+..+... -.|....|..+|.. ...+| +..+..+++.| .+-.|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 34444443 2334444555566666666655432 12334444444432 12233 44445555544 11135555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 035659 454 WGALLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
|...+.--..+|..+.+-.++.++.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHH
Confidence 5555554445555555544444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.64 E-value=21 Score=36.22 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC----CCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELEP----ENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
...+|..+...+++.|+++.|...+.++.+.++ ..+.....-+......|+..+|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999998652 2456667778899999999999999988877433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.00 E-value=26 Score=31.69 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH--HHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHH-----HHHHHHhcCCHHHH
Q 035659 366 EALDLFSRMQEAKVKPNAVTFTN--VLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTC-----MVDMLGRAGLLDEA 438 (655)
Q Consensus 366 ~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~-----li~~~~~~g~~~~A 438 (655)
+......++.....+-..-++.. +...+...|++++|...++..... |.-..+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555556655432222223322 334577888999998888876532 22333333 34567788999999
Q ss_pred HHHHHhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 439 VEFIEKMPIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 439 ~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
+..++... .++ ......-...+...|+-++|+..|++.++.++.
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99998763 122 122333446788899999999999999988743
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.63 E-value=10 Score=34.16 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHH
Q 035659 318 YLTTSLIDMYTKCGNLDKALEVFHTVKSRD------VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP---NAVTFTN 388 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ 388 (655)
..+..+.+.|++.|+.++|.+.|.++.+.. +..+-.+|......+++..+...+.+....--.+ +...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356677778888888888888888776542 2356667777777788887777776665432221 2111111
Q ss_pred HHHH--HHccCcHHHHHHHHHHcch
Q 035659 389 VLCA--CSHSGLVDEGRMFFNQMEP 411 (655)
Q Consensus 389 ll~a--~~~~g~~~~a~~~~~~~~~ 411 (655)
+..+ +...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1111 3345677777766666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.32 E-value=1.8 Score=42.19 Aligned_cols=111 Identities=16% Similarity=0.066 Sum_probs=77.4
Q ss_pred HHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCC
Q 035659 390 LCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHEN 466 (655)
Q Consensus 390 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~ 466 (655)
..-|.++|.+++|+..|.... .+.| ++.+|..-..+|.+..++..|+.=-+.. .+. .-.-.|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 356889999999999999876 4566 8888988899999999888776544332 111 012344555555556688
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 467 VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 467 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
.++|.+-++.+++++|.+.. |-..|++.....|+.-+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 99999999999999998644 34445544445554433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.19 E-value=3.6 Score=35.91 Aligned_cols=51 Identities=20% Similarity=0.181 Sum_probs=24.8
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
..++.+.++.+++-+.-+.|..+..-..-+..+...|+|.+|..+++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 334444455555544444554444444444444555555555555554433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.96 E-value=47 Score=33.65 Aligned_cols=149 Identities=12% Similarity=-0.024 Sum_probs=78.1
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC--cc
Q 035659 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP---NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG--VK 420 (655)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 420 (655)
....+|..++..+.+.|+++.|...+.++...+... +......-+...-..|+.++|...++...+. .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345678888888888888888888888877643211 2233333444556677888888877777652 11111 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHH-HHhCCCCCChhHHHHHHHHHHh------cCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 421 HYTCMVDMLGRAGLLDEAVEF-IEKMPIVPGASVWGALLGACKI------HENVELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
....+...+.. ..+..... ........-..++..+..-+.. .++.+++...|..+.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 0000000001122222222223 378889999999999999988878777776
Q ss_pred HHHh
Q 035659 494 IYAK 497 (655)
Q Consensus 494 ~~~~ 497 (655)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.56 E-value=3.5 Score=27.02 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=16.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQ 311 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 311 (655)
++..+..++...|++++|.++++++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555566666666666666666664
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.03 E-value=2 Score=26.47 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=20.9
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 035659 163 GMVIKSSFEDDLFISNSLIHFYAICGDLAMAY 194 (655)
Q Consensus 163 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 194 (655)
++.++.. +.+..+|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4445544 556677777777777777777775
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.81 E-value=2.4 Score=25.76 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666777777777666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.65 E-value=31 Score=30.56 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=54.6
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH-HHHHHHH--H
Q 035659 216 VQGGFFEKAIELYREMEMENVKPDEV-TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF-TFVSVLS--A 291 (655)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~-t~~~ll~--~ 291 (655)
++.+..++|+.-|..+.+.|...=+. .---......+.|+.. .|...|+++-... -.|-.. -..-|=. .
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta------~AV~aFdeia~dt-~~P~~~rd~ARlraa~l 141 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTA------AAVAAFDEIAADT-SIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHH------HHHHHHHHHhccC-CCcchhhHHHHHHHHHH
Confidence 45566677777777766655431111 0011111223344433 6666666655433 222211 1111111 1
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 344 (655)
+...|.++....-.+-+...+-+.....-.+|.-+-.|.|++.+|.+.|..+.
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 23445555554444444433333333444455555555666666666665554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.24 E-value=4.5 Score=34.68 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 464 HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.++.++++.+++.+.-+.|+....-..-+..+...|+|++|.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666666666666666667666666666666667777777777776666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.54 E-value=85 Score=34.81 Aligned_cols=30 Identities=30% Similarity=0.703 Sum_probs=20.2
Q ss_pred chHHHHHHH-----HHhcCCHHHHHHHHHhCCCCC
Q 035659 420 KHYTCMVDM-----LGRAGLLDEAVEFIEKMPIVP 449 (655)
Q Consensus 420 ~~y~~li~~-----~~~~g~~~~A~~~~~~m~~~p 449 (655)
.++..|++. +...|++++|++.++++++-|
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 445455443 467899999999999998777
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.27 E-value=28 Score=38.05 Aligned_cols=200 Identities=16% Similarity=0.269 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHCCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch-------hhHHHHHHHHHhcCCH
Q 035659 264 EALSIFHELQLSKNVNPD---EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC-------YLTTSLIDMYTKCGNL 333 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~ 333 (655)
+--..+.+|+.+- -.|+ ..+...++-.|....+++...++.+.+.+..-..+. +.|.--++---+-|+-
T Consensus 181 ~l~~~L~~mR~Rl-Dnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRL-DNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHhhc-CCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 5556778887654 3444 345666677777778888888888887763200010 1111112222245777
Q ss_pred HHHHHHHhhcCC------CChh-----HHHHH--HHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccC
Q 035659 334 DKALEVFHTVKS------RDVF-----VWSTM--IAGFAMYGCGREALDLFSRMQEAKVKPNAVT---FTNVLCACSHSG 397 (655)
Q Consensus 334 ~~A~~~~~~~~~------~~~~-----~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g 397 (655)
++|..+.-.+.+ ||.. .|.-| -+.|...+..+.|.++|++.-+ +.|+..+ +..|+.+-.+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~-- 335 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE-- 335 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--
Confidence 777776655543 2332 22222 1335555666778888887766 5665443 3333333221
Q ss_pred cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
.++...++ ... |+ .|-..+++.|.+++-.++++- . ..+.+-.-.+++.+|.++.++|
T Consensus 336 ~Fens~El----q~I-gm--------kLn~LlgrKG~leklq~YWdV-------~---~y~~asVLAnd~~kaiqAae~m 392 (1226)
T KOG4279|consen 336 HFENSLEL----QQI-GM--------KLNSLLGRKGALEKLQEYWDV-------A---TYFEASVLANDYQKAIQAAEMM 392 (1226)
T ss_pred hccchHHH----HHH-HH--------HHHHHhhccchHHHHHHHHhH-------H---HhhhhhhhccCHHHHHHHHHHH
Confidence 11111111 000 11 233456778877776666532 2 2345556678999999999999
Q ss_pred hccCCCCcchHHHH
Q 035659 478 LELEPENHGALVLL 491 (655)
Q Consensus 478 ~~~~p~~~~~~~~l 491 (655)
.++.|+....-..+
T Consensus 393 fKLk~P~WYLkS~m 406 (1226)
T KOG4279|consen 393 FKLKPPVWYLKSTM 406 (1226)
T ss_pred hccCCceehHHHHH
Confidence 99998875444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.02 E-value=25 Score=31.64 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC------cc
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA--VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG------VK 420 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~ 420 (655)
..+..+...|.+.|+.++|++.|.++.+....|.. ..+..+|..+...+++..+.....++........| ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35777889999999999999999999886555543 34667788888889999988888877543111111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
.|..|. +...+++.+|-+.|-..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 222222 33567888888888766
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.93 E-value=1.6e+02 Score=37.43 Aligned_cols=310 Identities=12% Similarity=0.070 Sum_probs=173.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc----CCCC--eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 035659 179 SLIHFYAICGDLAMAYCVFVMI----GKKD--VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK 252 (655)
Q Consensus 179 ~li~~~~~~g~~~~A~~~f~~~----~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (655)
.|..+-.+|+.+..|...+++- .+.+ ..-|-.+...|..-+++++...+...-.. .| ....-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHh
Confidence 4445667889999999999883 2221 22344455588889999888777663111 11 23334445566
Q ss_pred cCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHH-HHHHHhcC
Q 035659 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSL-IDMYTKCG 331 (655)
Q Consensus 253 ~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g 331 (655)
.|++. .|...|+++.+.+ ++...+++.++......+.++...-..+-.... ..+....++.+ +.+--+.+
T Consensus 1462 ~g~~~------da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1462 SGNWA------DAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred hccHH------HHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhc
Confidence 77766 8999999998754 333678888887777777777766654444432 23333333333 44446777
Q ss_pred CHHHHHHHHhhcCCCChhHHHHH-H-HHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHH--
Q 035659 332 NLDKALEVFHTVKSRDVFVWSTM-I-AGFAMYGC--GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF-- 405 (655)
Q Consensus 332 ~~~~A~~~~~~~~~~~~~~~~~l-i-~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~-- 405 (655)
+++....... ..+..+|.+. + ..+.+..+ .-.-.++.+.+++.-+.| +.+|+..|.+..+.++
T Consensus 1533 qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~ 1601 (2382)
T KOG0890|consen 1533 QWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILM 1601 (2382)
T ss_pred chhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHH
Confidence 8877776665 5566666665 2 22222222 112223444443321111 1122222211111111
Q ss_pred --------HHHcchhcCccCCcc------hHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-----ChhHHHHHHHHHH
Q 035659 406 --------FNQMEPVYGVVPGVK------HYTCMVDMLGRAGLLDEAVEFIEKM----PIVP-----GASVWGALLGACK 462 (655)
Q Consensus 406 --------~~~~~~~~~~~p~~~------~y~~li~~~~~~g~~~~A~~~~~~m----~~~p-----~~~~~~~ll~~~~ 462 (655)
-.......++.++.. -|..-+..-....+..+-+--+++. ...| -..+|-.....++
T Consensus 1602 kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR 1681 (2382)
T KOG0890|consen 1602 KLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR 1681 (2382)
T ss_pred HHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 111111113333321 1221211111111111111111111 1122 2568999999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 463 IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
..|.++.|....-++.+..+ +..+.-.+......|+-..|..+++...+...
T Consensus 1682 ~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1682 LAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99999999999888888774 36788899999999999999999998886644
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.92 E-value=37 Score=30.15 Aligned_cols=123 Identities=11% Similarity=0.039 Sum_probs=68.5
Q ss_pred CCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHh-CCCCChhHH
Q 035659 99 PQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKS-SFEDDLFIS 177 (655)
Q Consensus 99 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~ 177 (655)
..++...|..+|..+++.|++..-..+ ...++-+|.......+-.... ....+.++--.|.+. + ..+
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~L~ql-----lq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~ 92 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQLHQL-----LQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAY 92 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHH-----HhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhH
Confidence 345555677777777777765544333 334456666666555533332 223344444444433 2 133
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 035659 178 NSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233 (655)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (655)
..+++.+...|++-+|.++.+....-+...-..++.+-.+.++..-=..+|+-..+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666777778888888877776555555556666666666665544444444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=81.75 E-value=15 Score=36.50 Aligned_cols=162 Identities=13% Similarity=0.056 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC---
Q 035659 349 FVWSTMIAGFAMYGCGREALDLF-------SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG--- 418 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~-------~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--- 418 (655)
.++..+..+.++.|++++++..- .+..+. .--...|..+..++.+..++.+++.+-..-....|..|.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds--~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~ 121 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDS--DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLG 121 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccc
Confidence 45666677788888888776542 222211 011245666666666666677777666554443344442
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CC-----CC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC----CCCc-
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-----VP--GASVWGALLGACKIHENVELAEYACSHLLELE----PENH- 485 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-----~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p~~~- 485 (655)
-....++..+..-.+.++++++.|+.. .+ .| ...++-.|...|.+..|+++|..+..++.++- -++.
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 123344556666777899999988875 11 11 24578899999999999999999988887753 2232
Q ss_pred -----chHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 486 -----GALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 486 -----~~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
.....++-++...|+.-+|.+.-++..
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 244567788889999988888776543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.57 E-value=34 Score=29.53 Aligned_cols=64 Identities=6% Similarity=-0.090 Sum_probs=30.1
Q ss_pred cCCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-eeHHHHHHHHHHh
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDD-LFISNSLIHFYAICGDLAMAYCVFVMIGKKD-VVSWNSMISGFVQ 217 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~ 217 (655)
..+++.+..++..+.-.. |+ ...-..-.-.+.+.|++++|.++|+.+.+.. ...|..-+.++|-
T Consensus 23 ~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred cCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 445555555555554432 22 1111122234455666777777776666543 2244444444433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.56 E-value=5.1 Score=39.14 Aligned_cols=86 Identities=21% Similarity=0.114 Sum_probs=61.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhc-
Q 035659 355 IAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA- 432 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~- 432 (655)
..-|.+.|.+++|+..|.+-+. +.| |.+++..-..+|.+...+..|+.-....... -...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 3569999999999999998877 567 9999999999999999888877666555431 12345566655
Q ss_pred ------CCHHHHHHHHHhC-CCCCCh
Q 035659 433 ------GLLDEAVEFIEKM-PIVPGA 451 (655)
Q Consensus 433 ------g~~~~A~~~~~~m-~~~p~~ 451 (655)
|+..+|.+=++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4555555544443 456763
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.53 E-value=56 Score=32.02 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=23.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCCh----hHHHHHHHHH
Q 035659 172 DDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFF----EKAIELYREM 231 (655)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m 231 (655)
+|..+....+..+...|..+-...+..-+..+|...=..-+.++.+.|+. .+++.++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 34444444444444444322222222222233333333444444444432 2344444444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.28 E-value=0.79 Score=39.73 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=61.5
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhH
Q 035659 144 FVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEK 223 (655)
Q Consensus 144 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 223 (655)
.++..+.+.+.+.....+++.+...+...+....+.++.+|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34566666777788888888888777667788889999999999888888888773332 444567777777787777
Q ss_pred HHHHHHHHH
Q 035659 224 AIELYREME 232 (655)
Q Consensus 224 A~~~~~~m~ 232 (655)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.07 E-value=6.2 Score=38.18 Aligned_cols=101 Identities=16% Similarity=0.288 Sum_probs=65.7
Q ss_pred hCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC-C------CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCC
Q 035659 64 TGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ-P------NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYF 136 (655)
Q Consensus 64 ~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 136 (655)
.|....+.+...++..-.... ++++++..+-++.+ | +... .+.++.+.+ -++++++.++..= ...|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~--~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~np-IqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSRE--EIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNP-IQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhcccccc--chhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCc-chhccc
Confidence 355555666666666655555 78888777766553 2 2111 122333332 3567788777766 577888
Q ss_pred CCcchHHHHHHHHHccCCchHHHHHHHHHHHhC
Q 035659 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS 169 (655)
Q Consensus 137 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 169 (655)
||.+++..+|+.+.+.++...|.++...|+...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888888777777766654
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.47 E-value=10 Score=38.93 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=56.2
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CC
Q 035659 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM---PI 447 (655)
Q Consensus 371 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~ 447 (655)
+.-++...-.|+.+...+.| ..+.|+++.+.+.+..... -+.....+..+++....+.|++++|..+-+.| .+
T Consensus 313 ~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 313 FAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred HHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc
Confidence 33333333345544444433 4556666666666655543 23334455666666666666666666666555 12
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 448 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
+ +..+...-.......|-++++.-.+++++.++|+
T Consensus 389 e-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 389 E-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred C-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 1 2333333333344555566666666666666543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.17 E-value=55 Score=31.11 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM----PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
+.+-|.+.|.+..|..-+++| +-.+ ....+-.+..+|...|-.++|.+..+-+....|++.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 446678888888887777776 1111 123555677888999999999887766655556553
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.09 E-value=3.8 Score=23.60 Aligned_cols=30 Identities=23% Similarity=0.078 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
.|..+...+...++++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555666666666666666665554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.02 E-value=14 Score=35.96 Aligned_cols=98 Identities=10% Similarity=0.186 Sum_probs=70.1
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 035659 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---------DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP 381 (655)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (655)
.|.+....+...++..-....++++++..+-.+... ..++|-.++ ..-+.++++.++..=+.-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 455556666677777777778888888877776542 222333222 2345678888888888888999
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchh
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
|..+++.++..+.+.+++.+|.++...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999988888877776653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.5 bits (189), Expect = 7e-15
Identities = 24/243 (9%), Positives = 70/243 (28%), Gaps = 16/243 (6%)
Query: 224 AIELYREMEMENVKPDEVTM-------VAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
A L ++ + ++ + A ++ +E + +
Sbjct: 27 AKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQA 86
Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
+P E +L ++D+ + + + + L A
Sbjct: 87 PESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLA 146
Query: 337 LEVFHTVKSR-------DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNV 389
+ + + +++ ++ G+A G +E + + +++A + P+ +++
Sbjct: 147 HHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206
Query: 390 LCACSHSGLVDEG-RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIV 448
L QM G+ ++ RA +L + +
Sbjct: 207 LQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265
Query: 449 PGA 451
P
Sbjct: 266 PQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.0 bits (172), Expect = 8e-13
Identities = 43/395 (10%), Positives = 118/395 (29%), Gaps = 21/395 (5%)
Query: 133 SPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAM 192
+P P E +++ A + V QA G ++ + + L +
Sbjct: 86 APESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPL 145
Query: 193 AYCVFVMIGKK-------DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVA 245
A+ + V+ + + +N+++ G+ + G F++ + + ++ + PD ++ A
Sbjct: 146 AHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205
Query: 246 VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIH 305
L ++ + ++ + + +LS + + ++
Sbjct: 206 ALQCMGRQ-----DQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259
Query: 306 AKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365
T+ L+ ++ +K+ + A C
Sbjct: 260 PTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVV 319
Query: 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425
+E +A L L R N++E V G
Sbjct: 320 SVEKPTLPSKE---VKHARKTLKTLRDQWEKALCRALRETKNRLE--REVYEGRFSLYPF 374
Query: 426 VDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENH 485
+ +L ++ ++ ++ +P + A + + + S ++ ++
Sbjct: 375 LCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHY 434
Query: 486 GALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEP 520
+ L A + R++ G +
Sbjct: 435 RKYLCL---LASDAEVPEPCLPRQYWEALGAPEAL 466
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 5e-08
Identities = 89/652 (13%), Positives = 197/652 (30%), Gaps = 176/652 (26%)
Query: 34 HQHHPH----------------PVF--SLIK--QCKNIKQ-LKQIHTQMLRTGLFFDPYS 72
H HH H VF + + CK+++ K I ++ + +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 73 ASK---LF-TPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQ------S 122
S LF T + E ++ +++ + N Y + L+ E Q
Sbjct: 61 VSGTLRLFWTLLSKQE----EMVQKFVEEVLRIN-YKF--LMSPIK--TEQRQPSMMTRM 111
Query: 123 FMIFLQLVYN-----SPYF---PNEFTFPFVIKAAARLVQFRVGQ--AIHGM--VIKSSF 170
++ +YN + Y + ++ A L++ R + I G+ K+
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYL---KLRQA--LLELRPAKNVLIDGVLGSGKTW- 165
Query: 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYRE 230
++ + Y + M + +F W ++ + E +L +
Sbjct: 166 -----VALDVCLSYKV--QCKMDFKIF----------WLNLKNCNSPETVLEMLQKLLYQ 208
Query: 231 ME---MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287
++ + + S A+ R L + L + +Q +K N
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-------- 260
Query: 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD 347
A ++ +I L LTT K + F + +
Sbjct: 261 ---------AFNLSCKI----------L---LTTR-----------FKQVTDFLSAATTT 287
Query: 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK--PNAVTFTNVLCACSHSG-LVDEGRM 404
E L + + + + P V TN S + +G
Sbjct: 288 HISLDHHSMTLTP----DEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLA 342
Query: 405 FFNQMEPVYGVVPGVKHYTCM---------VDMLG----RAGLLDEAVEFIEKMPIVPG- 450
++ KH C +++L R +V F I
Sbjct: 343 TWDN----------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTIL 391
Query: 451 -ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT-GKWDNVSELR 508
+ +W ++ + + +L +Y+ L+E +P+ + + +IY + K +N L
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYS---LVEKQPKES--TISIPSIYLELKVKLENEYALH 446
Query: 509 KHM--RVSGLKKEP--GCSSIEVNGEIHKFLA-----GESSH--PLCKEIYSKLDEIVAR 557
+ + + K ++ + + E L + ++ + +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 558 LKSFGYVPN-RSHLLQLVEEEDVQEQALNLHS---ERLAIAYG--LISVEPS 603
++ N +L +++ + + + ERL A L +E +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 7e-06
Identities = 67/540 (12%), Positives = 144/540 (26%), Gaps = 185/540 (34%)
Query: 6 PQHMETLSTPVISLPRHPN----------PTTLTVN-----NGHQHHPHPVFSL-IKQCK 49
Q L ++ L N T + ++ +F L +K C
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 50 N----IKQLKQIHTQMLRTGLFFDPYSASKLFTPCA--LGTFSSLEYAREMFDQIPQPNL 103
+ ++ L+++ Q+ DP S+ L S R + P N
Sbjct: 194 SPETVLEMLQKLLYQI-------DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 104 Y-----TWN------------TLI---------------RAYSSSAEPIQSFM------I 125
N L+ + S + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 126 FLQLVYNSPY-FPNEF--TFPFVIKAAARLVQ--------FR-VGQAIHGMVIKSSFEDD 173
L+ + P P E T P + A ++ ++ V +I+SS
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV- 365
Query: 174 LFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEM 233
+ L+ VF I + L
Sbjct: 366 -LEPAEYRKMFD---RLS----VF----PPSA-----HIP--------TILLSLI----W 396
Query: 234 ENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293
+V +V +V ++ K +E + P E+ + L V +
Sbjct: 397 FDVIKSDVMVV--VNKLHKYSLVE--KQPKESTISIPSIYLELKVKLENEY--------- 443
Query: 294 QLGAMDIGVQIHAKMKKQGIKLNCY----------LTTSLIDMY---------TKCGNLD 334
+H + ++ Y L +D Y + +
Sbjct: 444 ---------ALHRSI------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 335 KALEVFHTVKSRDVFV---W--STMIAGFAMYGCGREALDLFSRMQ--EAKVKPNAVTFT 387
+ + +F R VF+ + + + L+ +++ + + N +
Sbjct: 489 R-MTLF-----RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD---MLGRAGLLDEAVEFIEK 444
++ A ++D F ++E YT ++ M + +EA + +++
Sbjct: 543 RLVNA-----ILD----FLPKIEENLICSK----YTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 81/524 (15%), Positives = 152/524 (29%), Gaps = 147/524 (28%)
Query: 203 KDVVSWNSMISGFVQGGFFEKAIELYREM----EMENV--KPDEVTMVAVLSACAKKRDL 256
KD++S FV + ++ + + E++++ D V+ L +
Sbjct: 19 KDILSVF--EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-- 74
Query: 257 EFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ-LGAMDIGVQIHAKMKKQGIKL 315
E + F E L N +F + + Q + ++ ++
Sbjct: 75 -----QEEMVQKFVEEVLRINY---KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375
Y S + Y K L +AL +++V + + G G+ + L
Sbjct: 127 AKY-NVSRLQPYLK---LRQALLELR--PAKNVLI-------DGVLGSGKTWVAL-DVCL 172
Query: 376 EAKVK---PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-----------GVKH 421
KV+ + + N+ S +++ + Q++P + ++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 422 Y--TCMVDMLGRAGL--LDEAVEFIEKMPIVPGASVWGALLGACKI-----HENV--ELA 470
+ L L V A W A +CKI + V L+
Sbjct: 233 ELRRLLKSKPYENCLLVLLN----------VQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 471 EYACSHLLELEPENHG-----ALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE-----P 520
+H+ L+ + LL K+ + R L +E P
Sbjct: 283 AATTTHI-SLDHHSMTLTPDEVKSLLL-------KYLD-------CRPQDLPREVLTTNP 327
Query: 521 -GCSSIEVNGE-IHKFLA--GESSHPLCKEI-------YSKLD--EIVARLKSFG----- 562
S I E I LA H C ++ + L+ E
Sbjct: 328 RRLSII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 563 -YVPNRSHLLQLV----EEEDVQEQALNLHSERLAI------AYGL--ISVEPSQPIRIV 609
++P + LL L+ + DV LH L + I +E +
Sbjct: 385 AHIP--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 610 KNLRVCGDCHTVAKLISKLYNRE---------ILLRDRYRFHHF 644
L H ++ YN D+Y + H
Sbjct: 443 YAL------H--RSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHI 477
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 39/310 (12%), Positives = 87/310 (28%), Gaps = 54/310 (17%)
Query: 221 FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNP 280
F+ +L + ++ P + + V E + NE + H+L ++ P
Sbjct: 38 FKMCYKLTSVVMEKD--PFHASCLPVHIGTLV----ELNK-ANELFYLSHKLV---DLYP 87
Query: 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID------------MYT 328
+ + +G K + ++ +
Sbjct: 88 S--------NPVSWFA---VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA 136
Query: 329 KCGNLDKALEVFHT---VKSRDVFVWSTMIAGFAMYGCGR--EALDLFSRMQEA-KVKPN 382
D+A+ + T + + G A F +A + P
Sbjct: 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYI--GLEYGLTNNSKLAERFF---SQALSIAPE 191
Query: 383 -AVTFTNVLCACSHSGLVDEGRMFFNQ---MEPVYGVVPGVKHYTCMVDMLGRA----GL 434
V +G +F G V + +++ LG
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251
Query: 435 LDEAVEFIEK-MPIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492
EA+++ + + ++P AS + A+ + N E A L L ++ ++ +L
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311
Query: 493 NIYAKTGKWD 502
+
Sbjct: 312 HCIEMYIGDS 321
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 20/198 (10%)
Query: 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD---VFVWSTMIAGFAMYGCGR--EALDL 370
+ L D L + + D + V+ +++ G + +
Sbjct: 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH--LASLHESGEKNKLYLI 361
Query: 371 FSRMQEAKVKPN-AVTFTNVLCACSHSGLVDEGRMFFN---QMEPVYGVVPGVKHYTCMV 426
+ + P AVT+ V + E R +F+ M+P +G +
Sbjct: 362 SNDL--VDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA-----WIGFA 414
Query: 427 DMLGRAGLLDEAVEFIEK-MPIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPEN 484
G D+A+ + G + L N+ LA L +
Sbjct: 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474
Query: 485 HGALVLLSNIYAKTGKWD 502
L L +
Sbjct: 475 PLLLNELGVVAFNKSDMQ 492
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 2e-04
Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 19/188 (10%)
Query: 357 GFAMYGCGR--EALDLFSRMQEAKVKPNAVTFTNVLC-ACSHSGLVDEGRMFFNQM---E 410
G EA+ L+ + +V P + L G + E M + +
Sbjct: 16 ANIKREQGNIEEAVRLYRKA--LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73
Query: 411 PVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK-MPIVPG-ASVWGALLGACKIHENVE 468
P + Y+ M + L + A++ + + I P A L K N+
Sbjct: 74 PTF-----ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 128
Query: 469 LAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVN 528
A + L+L+P+ A L++ W + E K + +
Sbjct: 129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL----VSIVADQLEKNRL 184
Query: 529 GEIHKFLA 536
+H +
Sbjct: 185 PSVHPHHS 192
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 44/298 (14%), Positives = 77/298 (25%), Gaps = 42/298 (14%)
Query: 271 ELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC 330
E Q K +P+ V A L GV + +L +
Sbjct: 21 EAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRM--FAEYLASH 78
Query: 331 GNLDKALEVFHTVKSRDV---FVWSTMIAGFAMYGCGR--EALDLFSRMQEAKVKPNAVT 385
D + SR V ++A + AL + + V
Sbjct: 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQ 138
Query: 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445
+D R +M+ + T V + L +A ++M
Sbjct: 139 ------ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM 192
Query: 446 PIVPGASVWG-ALLGACKIH-ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKW-D 502
++ AC + E AE L+ + + L+ L + GK +
Sbjct: 193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPE 252
Query: 503 NVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKL---DEIVAR 557
+ + SHP KE +K D +V +
Sbjct: 253 VTNRYLS-----------------------QLKDAHRSHPFIKEYRAKENDFDRLVLQ 287
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 42/189 (22%)
Query: 327 YTKCGNLDKALEVFHTV---KSRDVFVWSTMIAGFAMYGCGR--EALDLFSRMQEA-KVK 380
+ K G KA+ KS + + + Y G +L +E K+
Sbjct: 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKI--STLYYQLGDHELSLSEV---RECLKLD 218
Query: 381 P-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
+ F + + L++ G +A
Sbjct: 219 QDHKRCFAHYKQVKKLNKLIESAEELIRD------------------------GRYTDAT 254
Query: 440 EF----IEKMPIVPGASVWG-ALLGACKIH-ENVELAEYACSHLLELEPENHGALVLLSN 493
++ P V +V + C E A CS +L++EP+N AL +
Sbjct: 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314
Query: 494 IYAKTGKWD 502
Y +D
Sbjct: 315 AYLIEEMYD 323
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 655 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.63 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.48 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.48 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.44 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.43 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.42 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.41 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.39 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.39 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.36 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.33 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.31 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.22 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.21 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.21 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.2 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.2 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.13 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.12 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.08 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.04 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.97 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.96 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.95 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.93 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.87 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.86 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.85 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.84 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.77 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.77 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.74 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.71 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.7 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.69 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.66 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.66 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.63 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.62 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.61 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.6 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.6 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.59 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.59 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.58 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.58 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.58 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.57 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.56 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.55 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.55 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.54 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.53 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.5 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.5 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.49 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.47 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.45 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.45 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.44 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.41 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.41 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.4 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.33 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.29 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.29 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.28 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.27 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.26 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.22 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.21 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.21 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.21 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.19 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.18 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.18 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.17 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.17 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.17 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.17 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.16 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.16 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.15 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.12 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.11 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.1 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.1 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.09 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.08 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.08 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.08 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.0 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.98 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.98 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.97 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.96 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.95 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.95 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.94 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.93 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.91 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.91 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.88 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.85 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.85 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.84 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.84 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.83 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.81 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.8 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.78 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.77 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.74 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.73 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.72 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.69 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.63 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.62 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.58 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.55 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.51 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.51 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.28 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.28 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.23 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.17 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.06 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.02 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.9 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.89 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.87 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.83 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.82 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.73 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.66 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.52 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.44 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.33 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.13 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.99 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.86 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.81 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.71 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.7 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.66 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.45 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.1 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.76 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.25 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.19 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.15 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.96 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.14 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.86 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.42 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.55 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.39 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 89.25 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.04 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.78 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.45 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.88 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.82 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.71 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.56 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.53 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.96 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.55 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.5 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 81.24 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.06 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.06 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.5 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.12 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=351.15 Aligned_cols=428 Identities=8% Similarity=-0.012 Sum_probs=347.1
Q ss_pred CChhhhhHHHHhhhcCCCCChHHHHHHhhcCC--CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHH
Q 035659 68 FDPYSASKLFTPCALGTFSSLEYAREMFDQIP--QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFV 145 (655)
Q Consensus 68 ~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~l 145 (655)
+++..++.++..|.+.| ++++|..+|+++. .|+..+|..++.+|.+.|++++|+.+|+.+ .. ..++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQ--QYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKE-DL--YNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT-CG--GGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc--CchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHH-hc--cccchhHHHHH
Confidence 46667777777777777 7777777777764 356677777777777777777777777776 22 24667777777
Q ss_pred HHHHHccCCchHHHHHHHHHHHh---------------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CeeH
Q 035659 146 IKAAARLVQFRVGQAIHGMVIKS---------------SFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK--K-DVVS 207 (655)
Q Consensus 146 l~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~ 207 (655)
+.++.+.|++++|.++++++... |.+.+..+|+.++.+|.+.|++++|.++|++|.+ | +..+
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 77777777777777777642111 1122466777777777777777777777777654 2 2222
Q ss_pred HHH--------------------------------------HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 035659 208 WNS--------------------------------------MISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSA 249 (655)
Q Consensus 208 ~~~--------------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (655)
|.. ++..|.+.|++++|.++|++|.+. +++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 222 244455667777777777777654 4788899999999
Q ss_pred HhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 035659 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK 329 (655)
Q Consensus 250 ~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 329 (655)
+.+.|+++ +|+++|+++...+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+
T Consensus 315 ~~~~g~~~------~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 315 LFVRSRFI------DVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHTTCHH------HHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHH
T ss_pred HHHhcCHH------HHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 99999976 9999999998764 4467789999999999999999999999998764 5678899999999999
Q ss_pred cCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 035659 330 CGNLDKALEVFHTVK---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 330 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 406 (655)
.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.|++++|.++|
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999875 3568899999999999999999999999999863 347889999999999999999999999
Q ss_pred HHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPG--ASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 407 ~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
+.+.+. ...+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|+..++++
T Consensus 465 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 465 QSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999864 2346789999999999999999999999987 45777 789999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 478 LELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 478 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
++.+|++..+|..++.+|.+.|++++|.+.++++.+.
T Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 543 LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=340.44 Aligned_cols=445 Identities=9% Similarity=-0.044 Sum_probs=388.0
Q ss_pred CCcccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcC--CCCCcchHHHHH
Q 035659 36 HHPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQI--PQPNLYTWNTLI 110 (655)
Q Consensus 36 ~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~--~~~~~~~~~~li 110 (655)
++...+..++..+...++. ..++..+.. ..|+..+++.+..+|.+.| ++++|+.+|+++ ..+++.+|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTG--DYARAKCLLTKEDLYNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTT--CHHHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcC--cHHHHHHHHHHHhccccchhHHHHHH
Confidence 3455677888888877766 567777764 4568889999999999999 999999999999 468899999999
Q ss_pred HHHHhCCCcHHHHHHHHHhhhcC--------------CCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhH
Q 035659 111 RAYSSSAEPIQSFMIFLQLVYNS--------------PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFI 176 (655)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~m~~~~--------------~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 176 (655)
.+|.+.|++++|+.+|+++.... +..++..+|..++.++.+.|++++|.++++.+++.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 99999999999999999652332 234467899999999999999999999999999876 333333
Q ss_pred HH--------------------------------------HHHHHHHhcCCHHHHHHHHhhcCC--CCeeHHHHHHHHHH
Q 035659 177 SN--------------------------------------SLIHFYAICGDLAMAYCVFVMIGK--KDVVSWNSMISGFV 216 (655)
Q Consensus 177 ~~--------------------------------------~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~ 216 (655)
+. .++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 33 335667788999999999999988 79999999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC
Q 035659 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296 (655)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g 296 (655)
+.|++++|+++|++|.+.+ +.+..++..++.++.+.|+.+ +|.++|+++... .+.+..++..++..|.+.|
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKN------KLYLISNDLVDR--HPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHH------HHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHH------HHHHHHHHHHhh--CcccHHHHHHHHHHHHHhc
Confidence 9999999999999999876 347889999999999999976 999999999865 3567889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSR 373 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (655)
++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|++
T Consensus 388 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 388 KISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999864 45688999999999999999999999998753 4788999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhc---CccCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 035659 374 MQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY---GVVPG--VKHYTCMVDMLGRAGLLDEAVEFIEKM-PI 447 (655)
Q Consensus 374 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m-~~ 447 (655)
|.+.. +.+..+|..++..+.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ..
T Consensus 467 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99863 3478899999999999999999999999997642 44677 679999999999999999999999987 33
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 448 VP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 448 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
.| +..+|..+..+|...|++++|.+.++++++++|+++.++..++++|.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 34 78999999999999999999999999999999999999999988774
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=255.09 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=172.3
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCC---hHHHHHHHHHHHHCCCCCCCH
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRW---PNEALSIFHELQLSKNVNPDE 282 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~---~~~A~~l~~~m~~~~~~~p~~ 282 (655)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+....... .++|.++|++|...| +.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G-~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK-VVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT-CCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC-CCCCH
Confidence 45888999999999999999999999999999999999999999998876543322 568999999999998 99999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHH
Q 035659 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK----SRDVFVWSTMIAGF 358 (655)
Q Consensus 283 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~ 358 (655)
.||+++|.+|++.|++++|.+++++|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999886 36888999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 035659 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396 (655)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 396 (655)
++.|+.++|.++|++|++.|..|+..||+.++..++..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999989999999998888887654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-25 Score=230.50 Aligned_cols=373 Identities=14% Similarity=0.108 Sum_probs=309.6
Q ss_pred HHHHHhCCCcHHHHHHHHHhhhcCCCCCCc-chHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 035659 110 IRAYSSSAEPIQSFMIFLQLVYNSPYFPNE-FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188 (655)
Q Consensus 110 i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 188 (655)
...+.+.|++++|+..|..+... .|+. ..+..+...+...|+++.|...++.+++.. +.+..++..+...|.+.|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 34566788999999998887333 3544 445555566778889999999998888875 667788999999999999
Q ss_pred CHHHHHHHHhhcCC--C-CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCccccCCChHH
Q 035659 189 DLAMAYCVFVMIGK--K-DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPD-EVTMVAVLSACAKKRDLEFGRWPNE 264 (655)
Q Consensus 189 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~ 264 (655)
++++|...|+++.+ | +..+|..+...+.+.|++++|++.|+++.+.. |+ ...+..+...+...|+++ +
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~------~ 153 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLE------E 153 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHH------H
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHH------H
Confidence 99999999988753 4 45578999999999999999999999988753 54 445667777888888866 9
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344 (655)
Q Consensus 265 A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 344 (655)
|++.|+++.... +-+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..
T Consensus 154 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 154 AKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988753 4457788999999999999999999999999875 4567788899999999999999999998764
Q ss_pred ---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcch
Q 035659 345 ---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKH 421 (655)
Q Consensus 345 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 421 (655)
..+..+|..+...|...|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...|+.+.+. ...+...
T Consensus 231 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 307 (388)
T 1w3b_A 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADS 307 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHH
Confidence 3467889999999999999999999999999853 224678888999999999999999999999864 3446788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 499 (655)
+..+...+.+.|++++|.+.++++ ...|+ ..+|..+...+...|++++|...++++++..|.+..+|..++.++...|
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 999999999999999999999986 44454 6789999999999999999999999999999999999999999888766
Q ss_pred C
Q 035659 500 K 500 (655)
Q Consensus 500 ~ 500 (655)
+
T Consensus 388 ~ 388 (388)
T 1w3b_A 388 D 388 (388)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=252.02 Aligned_cols=203 Identities=16% Similarity=0.235 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCC---
Q 035659 222 EKAIELYREMEMENVKPDE-VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA--- 297 (655)
Q Consensus 222 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~--- 297 (655)
..+..+.+++.+.+..+.+ ..++.+|++|++.|+++ +|+++|++|.+.| +.||..||++||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~------~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~ 79 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVL------EALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATE 79 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSS
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHH------HHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhh
Confidence 3455677888888876654 46889999999999977 9999999999998 99999999999999987654
Q ss_pred ------HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHH
Q 035659 298 ------MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS----RDVFVWSTMIAGFAMYGCGREA 367 (655)
Q Consensus 298 ------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A 367 (655)
++.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|
T Consensus 80 ~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 80 SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 789999999999999999999999999999999999999999999974 6999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhc
Q 035659 368 LDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA 432 (655)
Q Consensus 368 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 432 (655)
.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+. +..|+..||+.++..|...
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999987 9999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-24 Score=224.23 Aligned_cols=351 Identities=17% Similarity=0.128 Sum_probs=308.7
Q ss_pred HHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChh
Q 035659 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFE 222 (655)
Q Consensus 146 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 222 (655)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+ .+..+|+.+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345678899999999999999885 55667788888999999999999999987654 46778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHhccCCHHH
Q 035659 223 KAIELYREMEMENVKPD-EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD-EFTFVSVLSACAQLGAMDI 300 (655)
Q Consensus 223 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~g~~~~ 300 (655)
+|+..|+++.+. .|+ ..+|..+..++.+.|+++ +|++.|+++... .|+ ...+..+...+...|++++
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~------~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDME------GAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSS------HHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHH
Confidence 999999999875 354 567999999999999987 999999999874 354 4567778888899999999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 035659 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEA 377 (655)
Q Consensus 301 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (655)
|.+.+.++.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++....
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 154 AKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999875 45678999999999999999999999998863 35678999999999999999999999999885
Q ss_pred CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCChhH
Q 035659 378 KVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-P-IVPGASV 453 (655)
Q Consensus 378 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~ 453 (655)
.| +..++..+..++...|++++|...|+.+.+. .| +...|..+...|.+.|++++|.+.++++ . .+++..+
T Consensus 233 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 307 (388)
T 1w3b_A 233 --SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307 (388)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH
Confidence 44 5788889999999999999999999999863 44 4678999999999999999999999987 2 2346789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
|..+...+...|++++|...++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999998863
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=210.83 Aligned_cols=308 Identities=13% Similarity=0.077 Sum_probs=237.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 035659 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVL 247 (655)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 247 (655)
+.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 33455566666666666666666666665542 345566666666666666666666666666543 22355666666
Q ss_pred HHHhccCccccCCChHHHHHHHHHHHHCCCCCCCH----HHHHHH------------HHHHhccCCHHHHHHHHHHHHHc
Q 035659 248 SACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE----FTFVSV------------LSACAQLGAMDIGVQIHAKMKKQ 311 (655)
Q Consensus 248 ~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~----~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~ 311 (655)
..+.+.|+++ +|++.|+++... .|+. ..+..+ ...+...|++++|...++.+.+.
T Consensus 102 ~~~~~~g~~~------~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 102 HLLLKQGKLD------EAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172 (450)
T ss_dssp HHHHHTTCHH------HHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHH------HHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666654 666666666653 2332 333333 44588899999999999999987
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHH
Q 035659 312 GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV-TFT 387 (655)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 387 (655)
. +.+..++..++.+|.+.|++++|.++|+++.+ .+..+|..+...|...|++++|+..|+++... .|+.. .+.
T Consensus 173 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 249 (450)
T 2y4t_A 173 C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFA 249 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred C-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHH
Confidence 5 56788999999999999999999999998863 57889999999999999999999999999874 45443 333
Q ss_pred HH------------HHHHHccCcHHHHHHHHHHcchhcCccCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 035659 388 NV------------LCACSHSGLVDEGRMFFNQMEPVYGVVPG-----VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP 449 (655)
Q Consensus 388 ~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p 449 (655)
.+ ...|.+.|++++|..+|+.+.+. .|+ ..+|..+..+|.+.|++++|++.++++ ...|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 33 67899999999999999999864 454 457899999999999999999999986 3344
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 035659 450 -GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494 (655)
Q Consensus 450 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 494 (655)
+..+|..+..+|...|++++|...++++++++|.++..+..++.+
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 578999999999999999999999999999999999999988844
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=211.04 Aligned_cols=394 Identities=8% Similarity=-0.031 Sum_probs=279.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 035659 106 WNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYA 185 (655)
Q Consensus 106 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 185 (655)
|-.....+.+.|++++|+..|++++... ||..++..+..++.+.|+++.|.+.++.+++.. +.+..++..+..+|.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4444455555566666666666552221 455555555556666666666666666665554 344455555666666
Q ss_pred hcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHH---------------------------------
Q 035659 186 ICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYR--------------------------------- 229 (655)
Q Consensus 186 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~--------------------------------- 229 (655)
+.|++++|...|+++.. .+......++..+........+.+.+.
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 66666666666655432 122222222222222211111111111
Q ss_pred --HHHHCCCC--------CC-HhhHHHHHHHHhc---cCccccCCChHHHHHHHHHHHH-----CCCC-------CCCHH
Q 035659 230 --EMEMENVK--------PD-EVTMVAVLSACAK---KRDLEFGRWPNEALSIFHELQL-----SKNV-------NPDEF 283 (655)
Q Consensus 230 --~m~~~g~~--------p~-~~t~~~ll~~~~~---~~~~~~~~~~~~A~~l~~~m~~-----~~~~-------~p~~~ 283 (655)
.+...... |+ ...+......+.. .|+++ +|+..|+++.. .... +.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYD------KADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHH------HHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHH------HHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 11111100 11 3333334443443 67755 99999999987 3101 12345
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAM 360 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 360 (655)
++..+...+...|++++|...++.+.+.... ..++..+...|.+.|++++|.+.|+.+.+ .+...|..+...|..
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 7788888899999999999999999987633 88899999999999999999999998764 367789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHH
Q 035659 361 YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 440 (655)
.|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. ...+...+..+...|.+.|++++|.+
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999853 235678888888999999999999999999864 22356788999999999999999999
Q ss_pred HHHhC----CCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 441 FIEKM----PIVPG----ASVWGALLGACKI---HENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 441 ~~~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
.++++ +..++ ..+|..+...+.. .|++++|...++++++..|.+..++..++.+|.+.|++++|.+.++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99886 22222 4489999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 035659 510 HMRVS 514 (655)
Q Consensus 510 ~m~~~ 514 (655)
+..+.
T Consensus 474 ~a~~~ 478 (514)
T 2gw1_A 474 ESADL 478 (514)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-21 Score=207.43 Aligned_cols=404 Identities=11% Similarity=-0.034 Sum_probs=317.9
Q ss_pred hhhHHHHhhhcCCCCChHHHHHHhhcCC--CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHH
Q 035659 72 SASKLFTPCALGTFSSLEYAREMFDQIP--QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAA 149 (655)
Q Consensus 72 ~~~~ll~~y~~~g~~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~ 149 (655)
.+..+-..|.+.| ++++|+..|+++. .||..+|..+..+|.+.|++++|+..|++++... +.+..++..+..++
T Consensus 8 ~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNK--KYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTS--CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 4455567778888 9999999999875 4788889999999999999999999999984332 23456788888999
Q ss_pred HccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh-------------------------------
Q 035659 150 ARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFV------------------------------- 198 (655)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~------------------------------- 198 (655)
...|++++|...++.+.+.+ +++......++..+.+......+.+.+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999998886 4454555555554444332222222221
Q ss_pred -------hcCC---------C-CeeHHHHHHHHHHh---CCChhHHHHHHHHHHH-----CCCC--------CCHhhHHH
Q 035659 199 -------MIGK---------K-DVVSWNSMISGFVQ---GGFFEKAIELYREMEM-----ENVK--------PDEVTMVA 245 (655)
Q Consensus 199 -------~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~t~~~ 245 (655)
.... + +...|......+.. .|++++|+..|+++.+ ..-. .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1110 1 13344444554554 8999999999999988 3212 23567888
Q ss_pred HHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 035659 246 VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLID 325 (655)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 325 (655)
+...+...|+++ +|+..|+++.... |+...+..+..++...|++++|...++.+.+.. +.+..++..+..
T Consensus 243 ~~~~~~~~~~~~------~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 243 TGIFKFLKNDPL------GAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHSSCHH------HHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHCCCHH------HHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 888999999976 9999999998754 447788899999999999999999999998865 456788999999
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 035659 326 MYTKCGNLDKALEVFHTVK---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402 (655)
Q Consensus 326 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 402 (655)
.|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999874 3467789999999999999999999999998853 33567888888999999999999
Q ss_pred HHHHHHcchhcCccCC----cchHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 035659 403 RMFFNQMEPVYGVVPG----VKHYTCMVDMLGR---AGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYA 473 (655)
Q Consensus 403 ~~~~~~~~~~~~~~p~----~~~y~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 473 (655)
...++.+.+...-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998764222222 3389999999999 99999999999886 2233 577889999999999999999999
Q ss_pred HHHHhccCCCCcchHHHH
Q 035659 474 CSHLLELEPENHGALVLL 491 (655)
Q Consensus 474 ~~~~~~~~p~~~~~~~~l 491 (655)
++++++++|.++..+..+
T Consensus 472 ~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 472 FEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHH
Confidence 999999999887776655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-20 Score=198.31 Aligned_cols=394 Identities=11% Similarity=0.030 Sum_probs=276.5
Q ss_pred chHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 035659 104 YTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHF 183 (655)
Q Consensus 104 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 183 (655)
..|..+...+.+.|++++|+..|++++... +.+...+..+..++.+.|++++|.+.++.+++.. +.+..++..+..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 345555566666666666666666663221 2244555566666666666666666666666654 4455566666666
Q ss_pred HHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHhh---------------
Q 035659 184 YAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME------NVKPDEVT--------------- 242 (655)
Q Consensus 184 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t--------------- 242 (655)
|.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++... ...|+...
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 666666666666665332 12222222333444444455566666555332 11122111
Q ss_pred ---------------HHHHHHHHhcc--------CccccCCChHHHHHHHHHHHHCCCCCCC--------HHHHHHHHHH
Q 035659 243 ---------------MVAVLSACAKK--------RDLEFGRWPNEALSIFHELQLSKNVNPD--------EFTFVSVLSA 291 (655)
Q Consensus 243 ---------------~~~ll~~~~~~--------~~~~~~~~~~~A~~l~~~m~~~~~~~p~--------~~t~~~ll~~ 291 (655)
...+...+... ++ +++|+.+|+++.... |+ ..++..+...
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~------~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDL------LTKSTDMYHSLLSAN---TVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHH------HHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHH------HHHHHHHHHHHHHHC---CCcchhhHHHHHHHHHHHHH
Confidence 11122121111 23 449999999998643 44 2346667778
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 035659 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 368 (655)
+...|++++|...+..+.+.. |+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 889999999999999999965 5588899999999999999999999998753 46788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC---
Q 035659 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM--- 445 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--- 445 (655)
..|+++.... +.+...+..+...+...|++++|..+++.+.+. ...+...+..+...|.+.|++++|.+.++++
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999998853 224678888999999999999999999999864 2334678899999999999999999999886
Q ss_pred -C----CCCChhHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 446 -P----IVPGASVWGALLGACKIH----------ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 446 -~----~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
+ .......+..+...+... |++++|...++++++..|.+..++..++.+|...|++++|.+.++.
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1 111223345556677777 9999999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 035659 511 MRVSG 515 (655)
Q Consensus 511 m~~~g 515 (655)
..+..
T Consensus 488 al~~~ 492 (537)
T 3fp2_A 488 SAILA 492 (537)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 88753
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-20 Score=196.05 Aligned_cols=362 Identities=12% Similarity=0.009 Sum_probs=266.6
Q ss_pred CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHH
Q 035659 102 NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLI 181 (655)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 181 (655)
++..|..+...+.+.|++++|+.+|+.+... .+.+..++..+..++...|++++|...++.+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 4556777777777888888888888777322 22356666777777777777777777777777765 44566677777
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCC---e---eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCc
Q 035659 182 HFYAICGDLAMAYCVFVMIGKKD---V---VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255 (655)
Q Consensus 182 ~~~~~~g~~~~A~~~f~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 255 (655)
.+|.+.|++++|...|+++.+.+ . .+|..++..+...+ +..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 77777777777777777665422 2 44555544433222 2223444666777
Q ss_pred cccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 035659 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335 (655)
Q Consensus 256 ~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (655)
++ +|+..|+++.... +.+..++..+..++.+.|++++|.+.+.++.+.. +.+..++..+...|.+.|++++
T Consensus 159 ~~------~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 159 YT------AAIAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HH------HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HH------HHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 65 9999999998753 5578889999999999999999999999998864 5678899999999999999999
Q ss_pred HHHHHhhcCC---CChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHc
Q 035659 336 ALEVFHTVKS---RDVFVWSTM------------IAGFAMYGCGREALDLFSRMQEAKVKPN-----AVTFTNVLCACSH 395 (655)
Q Consensus 336 A~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~ 395 (655)
|.+.|+++.. .+...+..+ ...+...|++++|+.+|+++.+. .|+ ...+..+..++.+
T Consensus 230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHH
Confidence 9999998853 344555554 78899999999999999999984 455 3467888889999
Q ss_pred cCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHH------------
Q 035659 396 SGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGA------------ 460 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~------------ 460 (655)
.|++++|...++.+.+. .| +...|..+..+|...|++++|.+.++++ ...|+ ...+..+..+
T Consensus 308 ~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 384 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY 384 (450)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred CCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhH
Confidence 99999999999998754 34 5789999999999999999999999987 55665 4566655533
Q ss_pred HHhcC-----CHHHHHHHHHH-HhccCCCCcc----------hHHHHHHHHHhcCCchh
Q 035659 461 CKIHE-----NVELAEYACSH-LLELEPENHG----------ALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 461 ~~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 503 (655)
|...| +.+++.+.+++ .++..|++.. .+..+..+|...|+.+.
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33334 56777888886 6666665432 34455555555555444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-18 Score=185.53 Aligned_cols=396 Identities=12% Similarity=0.014 Sum_probs=280.8
Q ss_pred hhhHHHHhhhcCCCCChHHHHHHhhcCC---CCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 035659 72 SASKLFTPCALGTFSSLEYAREMFDQIP---QPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148 (655)
Q Consensus 72 ~~~~ll~~y~~~g~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~ 148 (655)
.+..+...|.+.| ++++|+..|+++. ..++.+|..+..+|.+.|++++|+..|++++... +.+..++..+..+
T Consensus 27 ~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~ 102 (537)
T 3fp2_A 27 QLKNRGNHFFTAK--NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHTT--CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence 4455556666677 7777777777654 2355667777777777777777777777763322 2245566666667
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---------------------------
Q 035659 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIG--------------------------- 201 (655)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--------------------------- 201 (655)
+...|++++|...++ .+.. .|+. .+..+..+...+...+|...++.+.
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 777777777777774 2221 1211 1112223333334444555554442
Q ss_pred ----------CCCee---HHHHHHHHHHhC--------CChhHHHHHHHHHHHCCCCCC--------HhhHHHHHHHHhc
Q 035659 202 ----------KKDVV---SWNSMISGFVQG--------GFFEKAIELYREMEMENVKPD--------EVTMVAVLSACAK 252 (655)
Q Consensus 202 ----------~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~ 252 (655)
..+.. .+..+...+... |++++|+.+|+++.+.. |+ ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence 22222 223333322222 47899999999998753 43 2356667778888
Q ss_pred cCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 035659 253 KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN 332 (655)
Q Consensus 253 ~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 332 (655)
.|+++ +|+..|++.... .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|+
T Consensus 256 ~~~~~------~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 256 KNNLL------DAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp TTCHH------HHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccHH------HHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 88866 999999999874 5668888899999999999999999999999875 4568889999999999999
Q ss_pred HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHc
Q 035659 333 LDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQM 409 (655)
Q Consensus 333 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 409 (655)
+++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999998753 467789999999999999999999999998863 335668888889999999999999999998
Q ss_pred chhcCccCC----cchHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 035659 410 EPVYGVVPG----VKHYTCMVDMLGRA----------GLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYA 473 (655)
Q Consensus 410 ~~~~~~~p~----~~~y~~li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 473 (655)
.+...-.++ ...+..+...|.+. |++++|...+++. ...| +..+|..+...+...|++++|...
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 764221222 11244556777888 9999999999986 3333 578899999999999999999999
Q ss_pred HHHHhccCCCCcchHH
Q 035659 474 CSHLLELEPENHGALV 489 (655)
Q Consensus 474 ~~~~~~~~p~~~~~~~ 489 (655)
+++++++.|.+.....
T Consensus 485 ~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 485 FEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHC--CHHHHH
T ss_pred HHHHHHhCCCcHHHHH
Confidence 9999999998765544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-17 Score=169.80 Aligned_cols=318 Identities=9% Similarity=0.038 Sum_probs=217.7
Q ss_pred hHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHh
Q 035659 141 TFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQ 217 (655)
Q Consensus 141 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 217 (655)
.+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+.+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 34445555555666666666666665553 33455555555556666666666655555432 234455555555555
Q ss_pred CCChhHHHHHHHHHHHCCCCC---C-HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHh
Q 035659 218 GGFFEKAIELYREMEMENVKP---D-EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293 (655)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~p---~-~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~ 293 (655)
.|++++|+..|++..+. .| + ...+..+. ... ....+..+...+.
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~-----------------------~~~-------~~~~~~~~a~~~~ 131 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLV-----------------------KAD-------EMQRLRSQALDAF 131 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH-----------------------HHH-------HHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHH-----------------------HHH-------HHHHHHHHHHHHH
Confidence 55555555555555443 12 1 11110000 000 0011223356788
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDL 370 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 370 (655)
..|++++|.+.+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|...
T Consensus 132 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998875 56778899999999999999999999998764 4677899999999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHH------------HHHHHHHccCcHHHHHHHHHHcchhcCccCCc-----chHHHHHHHHHhc
Q 035659 371 FSRMQEAKVKPN-AVTFT------------NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV-----KHYTCMVDMLGRA 432 (655)
Q Consensus 371 ~~~m~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~y~~li~~~~~~ 432 (655)
|++..+. .|+ ...+. .+...+...|++++|...++.+.+. .|+. ..+..+...|.+.
T Consensus 211 ~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 211 VRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHc
Confidence 9999875 343 23222 2255688889999999999988764 3442 2355677888899
Q ss_pred CCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 433 GLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 433 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|++...+..+..++..
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999886 3334 577888899999999999999999999999999888887777776554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-17 Score=166.25 Aligned_cols=293 Identities=13% Similarity=0.057 Sum_probs=202.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHH
Q 035659 208 WNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVS 287 (655)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ 287 (655)
|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++ +|+..|+++.... +-+...+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~------~A~~~~~~~~~~~--~~~~~~~~~ 76 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSK------AALPDLTKVIALK--MDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHH------HHHHHHHHHHHhC--CCcchHHHH
Confidence 3334444444444444444444444321 112334444444444444433 4444444444321 223344444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCC---CchhhHH------------HHHHHHHhcCCHHHHHHHHhhcCC---CChh
Q 035659 288 VLSACAQLGAMDIGVQIHAKMKKQGIK---LNCYLTT------------SLIDMYTKCGNLDKALEVFHTVKS---RDVF 349 (655)
Q Consensus 288 ll~~~~~~g~~~~a~~~~~~~~~~g~~---~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~---~~~~ 349 (655)
+...+...|++++|...+..+.+.. + .+...+. .+...+...|++++|.+.|+++.+ .+..
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 155 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE 155 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 4445555555555555555554432 1 1222222 336788999999999999998753 4678
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCc-chHH-----
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV-KHYT----- 423 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~y~----- 423 (655)
.|..+...|...|++++|+..++++.... +.+...+..+...+...|++++|...|+...+. .|+. ..+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHH
Confidence 89999999999999999999999998853 346788888999999999999999999999864 3442 2222
Q ss_pred -------HHHHHHHhcCCHHHHHHHHHhC-CCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 424 -------CMVDMLGRAGLLDEAVEFIEKM-PIVPGA-----SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 424 -------~li~~~~~~g~~~~A~~~~~~m-~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
.+...+.+.|++++|.+.++++ ...|+. ..+..+...+...|++++|...++++++.+|+++.++..
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 311 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 2366789999999999999986 333442 235567788999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhC
Q 035659 491 LSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
++.+|...|++++|.+.++...+.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999998874
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-17 Score=168.29 Aligned_cols=342 Identities=15% Similarity=0.106 Sum_probs=130.5
Q ss_pred cCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHH
Q 035659 82 LGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAI 161 (655)
Q Consensus 82 ~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~ 161 (655)
++| ++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...
T Consensus 15 ~~~--~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIG--NLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hcc--CHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 567 8999999999997775 8999999999999999999999754 5888999999999999999999998
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh
Q 035659 162 HGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEV 241 (655)
Q Consensus 162 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 241 (655)
+....+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ .
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 8888775 45678899999999999999999988853 67778999999999999999998888866 3
Q ss_pred hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHH
Q 035659 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTT 321 (655)
Q Consensus 242 t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 321 (655)
.|..+..++.+.|+++ +|.+.++++ .+..+|..++.+|...|+++.|....
T Consensus 150 n~~~LA~~L~~Lg~yq------~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~---------------- 200 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQ------AAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCG---------------- 200 (449)
T ss_dssp CHHHHHHHHHTTTCHH------HHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTT----------------
T ss_pred hHHHHHHHHHHhccHH------HHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHH----------------
Confidence 5777777777777755 777777766 14566666666666666666663322
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCcH
Q 035659 322 SLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH--SGLV 399 (655)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~ 399 (655)
..+. .++.....++..|.+.|++++|+.+++...... +-....|+.+.-++++ -+++
T Consensus 201 -------------------l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~ 259 (449)
T 1b89_A 201 -------------------LHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 259 (449)
T ss_dssp -------------------TTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHH
T ss_pred -------------------HHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHH
Confidence 2211 111112234555555666666666666555432 2233344444444433 3455
Q ss_pred HHHHHHHHHcchhcCccC------CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 035659 400 DEGRMFFNQMEPVYGVVP------GVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473 (655)
Q Consensus 400 ~~a~~~~~~~~~~~~~~p------~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 473 (655)
.+.++.|..-. .+.| +...|.-++-.|..-++++.|...+-+-+ |+..--..+.....+-.+.|.--++
T Consensus 260 ~ehl~~~~~~i---ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYka 334 (449)
T 1b89_A 260 REHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRA 334 (449)
T ss_dssp HHHHHHHSTTS---CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHH
T ss_pred HHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHH
Confidence 55555554332 3444 46788889999999999999887665542 2332333334444445555544444
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCchhHHH
Q 035659 474 CSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506 (655)
Q Consensus 474 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 506 (655)
..-.++..| ...+.|..++...=+...+.+
T Consensus 335 i~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~ 364 (449)
T 1b89_A 335 IQFYLEFKP---LLLNDLLMVLSPRLDHTRAVN 364 (449)
T ss_dssp HHHHHHHCG---GGHHHHHHHHGGGCCHHHHHH
T ss_pred HHHHHhcCH---HHHHHHHHHHHhccCcHHHHH
Confidence 444444333 334444444433333333333
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-16 Score=159.67 Aligned_cols=234 Identities=12% Similarity=0.066 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhh
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLG-AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHT 342 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 342 (655)
+|+.+++++.... +.+...+..+...+...| ++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|++
T Consensus 74 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 150 (330)
T 3hym_B 74 ELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFT 150 (330)
T ss_dssp HHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444321 223344445555555555 5555555555555433 23344555566666666666666666655
Q ss_pred cCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcC-----
Q 035659 343 VKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG----- 414 (655)
Q Consensus 343 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----- 414 (655)
+.+ .+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|...++.+.+...
T Consensus 151 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 229 (330)
T 3hym_B 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229 (330)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence 432 234555556666677777777777777766642 23456666677777777777777777777664311
Q ss_pred --ccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 415 --VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 415 --~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
.......+..+...|.+.|++++|.+.+++. ... .+..+|..+...+...|++++|...++++++.+|++...+..
T Consensus 230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 309 (330)
T 3hym_B 230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTM 309 (330)
T ss_dssp CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHH
Confidence 1233567888888888889999998888876 222 356788889999999999999999999999999999999999
Q ss_pred HHHHHH-hcCCc
Q 035659 491 LSNIYA-KTGKW 501 (655)
Q Consensus 491 l~~~~~-~~g~~ 501 (655)
++.++. ..|+.
T Consensus 310 l~~~~~~~~g~~ 321 (330)
T 3hym_B 310 LGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHTTTTC-
T ss_pred HHHHHHHHhCch
Confidence 988884 44543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-16 Score=160.77 Aligned_cols=265 Identities=11% Similarity=0.022 Sum_probs=220.0
Q ss_pred CCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 035659 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316 (655)
Q Consensus 237 ~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 316 (655)
..+...+..+...+...|+++ +|+++|+++.... +.+...+..++.++...|++++|..++.++.+.. +.+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~------~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 89 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFK------MCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSN 89 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred hhhHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCC
Confidence 344555566666666666654 7777777766543 3445566677788889999999999999999875 456
Q ss_pred hhhHHHHHHHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035659 317 CYLTTSLIDMYTKCG-NLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392 (655)
Q Consensus 317 ~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 392 (655)
..++..+...|...| ++++|.+.|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 168 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE 168 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence 788999999999999 99999999998764 356789999999999999999999999998863 2245667778889
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C----------CCCChhHHHHHHHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-P----------IVPGASVWGALLGAC 461 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~----------~~p~~~~~~~ll~~~ 461 (655)
+...|++++|...++.+.+. ...+...+..+...|.+.|++++|...+++. . ...+..+|..+...+
T Consensus 169 ~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 99999999999999999853 2334678899999999999999999999876 1 133467999999999
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
...|++++|...++++++..|.+...+..++.+|...|++++|.+.+++..+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999987765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-17 Score=168.20 Aligned_cols=298 Identities=11% Similarity=-0.034 Sum_probs=201.6
Q ss_pred HHhcCCHHHHHH-HHhhcCC-----C--CeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCc
Q 035659 184 YAICGDLAMAYC-VFVMIGK-----K--DVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRD 255 (655)
Q Consensus 184 ~~~~g~~~~A~~-~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 255 (655)
|.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334567777777 7765433 1 34567777777777788888877777777653 2345566666666777776
Q ss_pred cccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 035659 256 LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335 (655)
Q Consensus 256 ~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (655)
++ +|++.|+++.... +.+..++..+...+...|++++|...+..+.+... .+...+..+... ..
T Consensus 114 ~~------~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~-------~~ 177 (368)
T 1fch_A 114 EL------LAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEG-------AG 177 (368)
T ss_dssp HH------HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC--------------
T ss_pred HH------HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHH-------hh
Confidence 54 7777777666543 33555666666666666777777766666666431 111111111000 00
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcC
Q 035659 336 ALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414 (655)
Q Consensus 336 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 414 (655)
. .. ....+..+...+ ..|++++|+..|+++.+..... +..++..+...+...|++++|...|+.+.+.
T Consensus 178 ~-------~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 246 (368)
T 1fch_A 178 G-------AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-- 246 (368)
T ss_dssp ----------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred h-------hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 0 00 001111222333 7889999999999998853221 4788888899999999999999999998764
Q ss_pred ccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------
Q 035659 415 VVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPEN------- 484 (655)
Q Consensus 415 ~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------- 484 (655)
.| +...|..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|.+
T Consensus 247 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 325 (368)
T 1fch_A 247 -RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325 (368)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred -CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence 34 4678999999999999999999999886 3334 57889999999999999999999999999998877
Q ss_pred ----cchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 485 ----HGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 485 ----~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
..+|..++.+|...|++++|..++++
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 78999999999999999999998763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-15 Score=158.46 Aligned_cols=367 Identities=11% Similarity=-0.036 Sum_probs=274.9
Q ss_pred CCcchHHHHHHHHHh----CCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHc----cCCchHHHHHHHHHHHhCCCC
Q 035659 101 PNLYTWNTLIRAYSS----SAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAAR----LVQFRVGQAIHGMVIKSSFED 172 (655)
Q Consensus 101 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 172 (655)
.++.++..+-..|.. .+++++|+..|++. ...| +...+..|-..+.. .++.++|.+.++...+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a-~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRA-AEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 355556666666665 67777777777777 4433 45566666666666 677788888888777765
Q ss_pred ChhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CCeeHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhhH
Q 035659 173 DLFISNSLIHFYAI----CGDLAMAYCVFVMIGK-KDVVSWNSMISGFVQ----GGFFEKAIELYREMEMENVKPDEVTM 243 (655)
Q Consensus 173 ~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 243 (655)
+...+..|..+|.. .+++++|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55666677777777 6788888888877654 355677777777776 778888888888887764 56677
Q ss_pred HHHHHHHhc----cCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCC
Q 035659 244 VAVLSACAK----KRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ----LGAMDIGVQIHAKMKKQGIKL 315 (655)
Q Consensus 244 ~~ll~~~~~----~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~ 315 (655)
..+...|.. .++. ++|++.|++....+ +...+..+...+.. .++.++|...+++..+.|
T Consensus 187 ~~Lg~~y~~g~g~~~~~------~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERND------AISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp HHHHHHHHHTSSSCCCH------HHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHhcCCCCCcCH------HHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 777777766 5554 48888888887654 45566666666664 788999999999888764
Q ss_pred chhhHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHH
Q 035659 316 NCYLTTSLIDMYTK----CGNLDKALEVFHTVKS-RDVFVWSTMIAGFAMY-----GCGREALDLFSRMQEAKVKPNAVT 385 (655)
Q Consensus 316 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t 385 (655)
+...+..|..+|.. .++.++|.+.|+...+ .+...+..+...|... ++.++|+.+|++..+.| +...
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 35566777788877 8899999999988765 4667788888888887 89999999999998865 4556
Q ss_pred HHHHHHHHHccC---cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCChhHHHHHH
Q 035659 386 FTNVLCACSHSG---LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR----AGLLDEAVEFIEKMPIVPGASVWGALL 458 (655)
Q Consensus 386 ~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll 458 (655)
+..+...+...| +.++|.++|+...+. .+...+..|..+|.. .+++++|.++|++.-...+...+..|.
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg 406 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 666766676656 889999999998764 456788889999988 899999999998862234677888888
Q ss_pred HHHHh----cCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 035659 459 GACKI----HENVELAEYACSHLLELEPE---NHGALVLLSNIYAK 497 (655)
Q Consensus 459 ~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 497 (655)
..|.. .++.++|...++++.+.+|+ ++.+...++.++..
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 88888 89999999999999999854 66666666655543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-18 Score=172.02 Aligned_cols=281 Identities=15% Similarity=0.151 Sum_probs=134.9
Q ss_pred hcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHH
Q 035659 186 ICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEA 265 (655)
Q Consensus 186 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A 265 (655)
+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|+++ +|
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~E------eA 80 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWE------EL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHH------HH
Confidence 6788999999999996664 899999999999999999999965 367779999999999999877 88
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 035659 266 LSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS 345 (655)
Q Consensus 266 ~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 345 (655)
++.++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+++.|...|.+++|...|..+
T Consensus 81 i~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 81 VKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 8877666553 4557788899999999999999888874 367779999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHH
Q 035659 346 RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCM 425 (655)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~l 425 (655)
..|..++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|......+ ...+.....+
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~l 213 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEEL 213 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHH
Confidence 47999999999999999999999988 27889999999999999999996655443 2334446678
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc--CCHHHHHHHHHHHhccCC-----CCcchHHHHHHHHH
Q 035659 426 VDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIH--ENVELAEYACSHLLELEP-----ENHGALVLLSNIYA 496 (655)
Q Consensus 426 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~ 496 (655)
+..|.+.|++++|..+++.. +.++ ....|.-|.-++++. ++..+.++.|..-+...| .+...|..+...|.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999874 5443 356777777777665 355566666665555556 67888999999999
Q ss_pred hcCCchhHHHH
Q 035659 497 KTGKWDNVSEL 507 (655)
Q Consensus 497 ~~g~~~~a~~~ 507 (655)
+.++|+.|...
T Consensus 294 ~~~e~d~A~~t 304 (449)
T 1b89_A 294 KYEEYDNAIIT 304 (449)
T ss_dssp HTTCHHHHHHH
T ss_pred hhchHHHHHHH
Confidence 99999988764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-14 Score=153.75 Aligned_cols=363 Identities=11% Similarity=-0.015 Sum_probs=299.3
Q ss_pred HHHHHHHhhhcCCCCCCcchHHHHHHHHHc----cCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHH
Q 035659 122 SFMIFLQLVYNSPYFPNEFTFPFVIKAAAR----LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAI----CGDLAMA 193 (655)
Q Consensus 122 A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 193 (655)
++..+... ...| |...+..+-..+.. .++++.|...++...+.| +...+..|..+|.. .++.++|
T Consensus 26 ~~~~~~~~-a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQK-AESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 34445444 3332 55666666666766 789999999999998875 56788889999999 8999999
Q ss_pred HHHHhhcCC-CCeeHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cCccccCCChHH
Q 035659 194 YCVFVMIGK-KDVVSWNSMISGFVQ----GGFFEKAIELYREMEMENVKPDEVTMVAVLSACAK----KRDLEFGRWPNE 264 (655)
Q Consensus 194 ~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~~~~~~~ 264 (655)
...|++..+ .+..++..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++. ++
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~------~~ 169 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDY------VM 169 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH------HH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH------HH
Confidence 999988765 467788889999988 889999999999998876 56777778777776 4554 49
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHH
Q 035659 265 ALSIFHELQLSKNVNPDEFTFVSVLSACAQ----LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK----CGNLDKA 336 (655)
Q Consensus 265 A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 336 (655)
|++.|++....+ +...+..+...+.. .++.++|.+.+.+..+.| +...+..|..+|.. .++.++|
T Consensus 170 A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 170 AREWYSKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 999999998765 56777888888877 899999999999999875 45678888888886 8999999
Q ss_pred HHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----CcHHHHHHHH
Q 035659 337 LEVFHTVKS-RDVFVWSTMIAGFAM----YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS-----GLVDEGRMFF 406 (655)
Q Consensus 337 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~ 406 (655)
.+.|+...+ .+...+..+...|.. .++.++|+.+|++..+.| +...+..+...+... ++.++|...|
T Consensus 243 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 243 RVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 999998765 467788888888888 899999999999998765 556666777777776 8999999999
Q ss_pred HHcchhcCccCCcchHHHHHHHHHhcC---CHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhc
Q 035659 407 NQMEPVYGVVPGVKHYTCMVDMLGRAG---LLDEAVEFIEKMPIVPGASVWGALLGACKI----HENVELAEYACSHLLE 479 (655)
Q Consensus 407 ~~~~~~~~~~p~~~~y~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 479 (655)
+...+. + +...+..|..+|.+.| ++++|.++|++.-...+...+..|...|.. .+++++|...++++.+
T Consensus 320 ~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 320 TKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 998764 3 4567888888888867 789999999887323578899999999988 8999999999999998
Q ss_pred cCCCCcchHHHHHHHHHh----cCCchhHHHHHHHHHhCCC
Q 035659 480 LEPENHGALVLLSNIYAK----TGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 480 ~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 516 (655)
.+ ++.++..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 75 56889999999998 8999999999999988763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-14 Score=156.06 Aligned_cols=407 Identities=10% Similarity=0.031 Sum_probs=279.2
Q ss_pred CChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC--C-CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHH
Q 035659 68 FDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ--P-NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPF 144 (655)
Q Consensus 68 ~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ 144 (655)
-|..+|..++. +.+.| +++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|+++ ... .|+...|..
T Consensus 11 ~~~~~w~~l~~-~~~~~--~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra-l~~--~p~~~lw~~ 84 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQ--PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRC-LMK--VLHIDLWKC 84 (530)
T ss_dssp TCHHHHHHHHH-HHHSS--CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTT--CCCHHHHHH
T ss_pred CCHHHHHHHHH-HHHhC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-Hhc--CCChHHHHH
Confidence 36778888888 46777 99999999988754 3 4557888999999999999999999988 332 366666666
Q ss_pred HHHHH-HccCCchHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CCe--
Q 035659 145 VIKAA-ARLVQFRVGQA----IHGMVIKS-SFED-DLFISNSLIHFYAI---------CGDLAMAYCVFVMIGK-KDV-- 205 (655)
Q Consensus 145 ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~f~~~~~-~~~-- 205 (655)
.+... ...|+.+.|++ +++.+++. |..| +..+|...+....+ .|+++.|+.+|++..+ |+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 55433 34567766655 66666553 5433 45677777776655 5778888888877654 221
Q ss_pred -eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHH------HCC--
Q 035659 206 -VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQ------LSK-- 276 (655)
Q Consensus 206 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~------~~~-- 276 (655)
..|..........|. ..+..++.+ ..+. +.+|..++.++. ...
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~~~~l~~---------------------~~~~------~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLAKKMIED---------------------RSRD------YMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHHHHHHHT---------------------THHH------HHHHHHHHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHHHHhhch-hHHHHHHHH---------------------hhHH------HHHHHHHHHHHHHHHHHhccccc
Confidence 122222111000010 001111110 1122 225655555421 111
Q ss_pred CCCCCH--------HHHHHHHHHHhc----cCCH----HHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-------cCCH
Q 035659 277 NVNPDE--------FTFVSVLSACAQ----LGAM----DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK-------CGNL 333 (655)
Q Consensus 277 ~~~p~~--------~t~~~ll~~~~~----~g~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~ 333 (655)
.++|+. ..|...+.-... .++. +.+..+|++++... +.+..+|..++..+.+ .|++
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccch
Confidence 024442 344444433222 1232 46778899888863 5678889988888876 7998
Q ss_pred H-------HHHHHHhhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHH
Q 035659 334 D-------KALEVFHTVKS---R-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA--VTFTNVLCACSHSGLVD 400 (655)
Q Consensus 334 ~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~ 400 (655)
+ +|..+|++..+ | +...|..++..+.+.|+.++|..+|+++.+ +.|+. ..|...+..+.+.|+++
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHH
Confidence 7 89999998764 3 578899999999999999999999999998 45653 47888888888999999
Q ss_pred HHHHHHHHcchhcCccCC-cchHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPG-VKHYTCMVDM-LGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSH 476 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~-~~~y~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 476 (655)
+|.++|+...+. .|+ ...|...... +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|++
T Consensus 374 ~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 374 SGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 999999999853 333 3333332222 34689999999999976 3234 578999999999999999999999999
Q ss_pred HhccCCCCcc----hHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 477 LLELEPENHG----ALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 477 ~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+++..|.++. .|...+......|+.+.+.++.+++.+.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998776654 6777788888899999999999988764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-16 Score=161.08 Aligned_cols=317 Identities=11% Similarity=0.019 Sum_probs=199.1
Q ss_pred ChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHH-HHHHhhhcCCCCC--CcchHHHHHHHHHccCCchHHHHHHH
Q 035659 87 SLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFM-IFLQLVYNSPYFP--NEFTFPFVIKAAARLVQFRVGQAIHG 163 (655)
Q Consensus 87 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~~p--d~~t~~~ll~~~~~~~~~~~a~~~~~ 163 (655)
.++.+...|+.+...+.. .+...|++++|++ .|.+.+....-.| +...+..+...+...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455555555555443322 2334478888888 8876622222222 45668888888899999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 035659 164 MVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDE 240 (655)
Q Consensus 164 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 240 (655)
.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.+.. |+.
T Consensus 89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 165 (368)
T 1fch_A 89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAY 165 (368)
T ss_dssp HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTT
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCc
Confidence 999875 56778889999999999999999999987653 467889999999999999999999999998764 322
Q ss_pred h-hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-chh
Q 035659 241 V-TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKL-NCY 318 (655)
Q Consensus 241 ~-t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~ 318 (655)
. .+..+ +. . ... ..+.. .+. .+..+...|++++|...+.++.+..... +..
T Consensus 166 ~~~~~~~-------~~---------~-------~~~--~~~~~-~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 166 AHLVTPA-------EE---------G-------AGG--AGLGP-SKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp GGGCC-----------------------------------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HHHHHHH-------HH---------H-------hhh--hcccH-HHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence 1 11100 00 0 000 01110 111 1222236677777777777777654221 466
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 395 (655)
++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.+.. +.+...+..+..++.+
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 777777777777888877777776542 356677777788888888888888888877642 2346677777778888
Q ss_pred cCcHHHHHHHHHHcchhcCccCC------------cchHHHHHHHHHhcCCHHHHHHHHHh
Q 035659 396 SGLVDEGRMFFNQMEPVYGVVPG------------VKHYTCMVDMLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~p~------------~~~y~~li~~~~~~g~~~~A~~~~~~ 444 (655)
.|++++|...|+.+.+. .|+ ...|..+..+|.+.|+.++|..++++
T Consensus 298 ~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 298 LGAHREAVEHFLEALNM---QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTCHHHHHHHHHHHHHH---HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHh---CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 88888888888877653 222 46788888888888888888877654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-14 Score=157.18 Aligned_cols=419 Identities=9% Similarity=-0.010 Sum_probs=283.8
Q ss_pred CcccHHHHHHHhcCcchH---HHHHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC--CCcchHHHHHH
Q 035659 37 HPHPVFSLIKQCKNIKQL---KQIHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ--PNLYTWNTLIR 111 (655)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~--~~~~~~~~li~ 111 (655)
+...+..++.. ...++. +.+++.+++. ++.+..+|..++..+.+.| +++.|+.+|++... |++..|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~--~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAK--NYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 34455555554 333444 7777777764 3457788999999999999 99999999999764 77777887775
Q ss_pred H-HHhCCCcHHHHH----HHHHhhhcCCCCCC-cchHHHHHHHHHc---------cCCchHHHHHHHHHHHhCCCCChhH
Q 035659 112 A-YSSSAEPIQSFM----IFLQLVYNSPYFPN-EFTFPFVIKAAAR---------LVQFRVGQAIHGMVIKSSFEDDLFI 176 (655)
Q Consensus 112 ~-~~~~g~~~~A~~----~~~~m~~~~~~~pd-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~ 176 (655)
. ....|+.++|.+ +|+..+...|..|+ ...|...+....+ .|+++.|..+++.+++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 3 345677777765 77777445566554 3455666655443 6789999999999988321111233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHH------HCC---CCCC--------
Q 035659 177 SNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREME------MEN---VKPD-------- 239 (655)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g---~~p~-------- 239 (655)
|..........|. ..+..++.. +.+++.+|..++.++. +.. +.|+
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 4333322111111 112222211 2344566666665532 211 2333
Q ss_pred HhhHHHHHHHHhccCc-cccC-CChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHH
Q 035659 240 EVTMVAVLSACAKKRD-LEFG-RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ-------LGAMD-------IGVQ 303 (655)
Q Consensus 240 ~~t~~~ll~~~~~~~~-~~~~-~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~ 303 (655)
...|...+......+. .+.. ....+|+.+|++..... +-+...|......+.+ .|+++ +|..
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 1344444432222110 0000 00136778899888753 4467778777777765 78887 8999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 035659 304 IHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--R-DV-FVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379 (655)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 379 (655)
++++.++.-.+.+...|..++..+.+.|++++|..+|+++.+ + +. ..|..++..+.+.|+.++|.++|++..+..
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~- 386 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 386 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 999998732355788999999999999999999999998753 3 33 489999999999999999999999998752
Q ss_pred CCCHHHHHHHHHH-HHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--h
Q 035659 380 KPNAVTFTNVLCA-CSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG--A 451 (655)
Q Consensus 380 ~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~ 451 (655)
+.+...|...... +...|+.++|..+|+...+. .| +...|..+++.+.+.|+.++|..+|++. +..|+ .
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 2223333332222 34689999999999999865 34 4788999999999999999999999986 23332 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
..|...+.....+|+.+.+..+.+++.+..|.
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 58999999999999999999999999998874
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-14 Score=159.15 Aligned_cols=375 Identities=14% Similarity=0.123 Sum_probs=257.4
Q ss_pred hhHHHHhhhcCCCCChHHHHHHhhcCC-CC-----CcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHH
Q 035659 73 ASKLFTPCALGTFSSLEYAREMFDQIP-QP-----NLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVI 146 (655)
Q Consensus 73 ~~~ll~~y~~~g~~~~~~A~~~f~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll 146 (655)
-...+..|+..| .+.+|.++++++. ++ +...-|.++.+..+. +..+..+..... . .....-+.
T Consensus 988 Vs~~vKaf~~ag--lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kL-d-------~~d~~eIA 1056 (1630)
T 1xi4_A 988 VSVTVKAFMTAD--LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRL-D-------NYDAPDIA 1056 (1630)
T ss_pred hHHHHHHHHhCC--CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHh-h-------hccHHHHH
Confidence 344555555555 6666666666554 11 112344455544444 334444444333 1 11133355
Q ss_pred HHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHH
Q 035659 147 KAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIE 226 (655)
Q Consensus 147 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 226 (655)
..|...|.+++|.++++... ......+.+ +-..|++++|.++.+++. +..+|..+..++.+.|++++|++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence 56666777777777777641 111112222 226677888888877663 46678888899999999999998
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 035659 227 LYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHA 306 (655)
Q Consensus 227 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 306 (655)
.|.+. -|...|..++.+|.+.|+++ +|++.|...++.. ++....+.++.+|++.++++....+.
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyE------EAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWE------ELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHH------HHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 88653 46777888888999999876 8888888766532 34333445888888888887644442
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 035659 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTF 386 (655)
Q Consensus 307 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 386 (655)
+ .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 2 345566677888888999999999999885 48888999999999999999998877 256888
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhc
Q 035659 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIH 464 (655)
Q Consensus 387 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~ 464 (655)
..+-.+|...|.+..|......+ ..++..+..++..|.+.|.+++|+.+++.. +.+|. ...|.-|...+.+.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 88888898888888888766543 234557778999999999999999999775 44443 44666666666554
Q ss_pred --CCHHHHHHHHHHHhccCC-----CCcchHHHHHHHHHhcCCchhHHHH
Q 035659 465 --ENVELAEYACSHLLELEP-----ENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 465 --g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
++..++.+.|..-....| .+...|.-+...|.+.|+|+.|...
T Consensus 1328 ~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 456666777776665544 5677888999999999999998853
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-15 Score=155.14 Aligned_cols=326 Identities=11% Similarity=0.009 Sum_probs=169.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CCeeHHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCC-H
Q 035659 175 FISNSLIHFYAICGDLAMAYCVFVMIGK-----------KDVVSWNSMISGFVQ--GGFFEKAIELYREMEMENVKPD-E 240 (655)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~-~ 240 (655)
.+|+.+..+|...|++++|...|++..+ ....+++.+..++.. .+++++|++.|++..+. .|+ .
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~ 172 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNP 172 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCH
Confidence 3445555555555555555554443321 012233333333333 23455666666655543 232 2
Q ss_pred hhHHHHHHHHh---ccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCC
Q 035659 241 VTMVAVLSACA---KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ----LGAMDIGVQIHAKMKKQGI 313 (655)
Q Consensus 241 ~t~~~ll~~~~---~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~ 313 (655)
..+..+..++. ..++.+ +|++.|++..... +.+...+..+...+.. .++.++|.+.+++..+..
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~------~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~- 243 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQ------NAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA- 243 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCC------CTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchHHH------HHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-
Confidence 23333332222 223322 5555555554432 2233344333333332 234556666666655543
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH-------------------cCChHHHHHHH
Q 035659 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAM-------------------YGCGREALDLF 371 (655)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~~~ 371 (655)
+.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|.. .+..++|...|
T Consensus 244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 323 (472)
T 4g1t_A 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323 (472)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455556666666666666666666665432 233444444443322 23356788888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcc----hHHHHHH-HHHhcCCHHHHHHHHHhC-
Q 035659 372 SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK----HYTCMVD-MLGRAGLLDEAVEFIEKM- 445 (655)
Q Consensus 372 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~y~~li~-~~~~~g~~~~A~~~~~~m- 445 (655)
++..+.. +.+..++..+...+...|++++|...|++..+. .|+.. .+..+.. .+...|+.++|+..|++.
T Consensus 324 ~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 324 KKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8877643 234566777888899999999999999988753 33322 2233332 234678999999998875
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeE
Q 035659 446 PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSS 524 (655)
Q Consensus 446 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 524 (655)
.+.|+...+... ...+..++++.++.+|.++.+|..|+.+|...|++++|.+.+++..+.+-......+|
T Consensus 400 ~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 400 KINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred hcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 556665443322 3455677888889999999999999999999999999999999988865433333343
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-15 Score=147.51 Aligned_cols=270 Identities=13% Similarity=0.055 Sum_probs=200.9
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 035659 215 FVQGGFFEKAIELYREMEMENVKPD--EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSAC 292 (655)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~ 292 (655)
....|++.+|+..++..... .|+ ......+.++|...|+.+ +|+..++. . -+|+..++..+...+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~------~al~~~~~---~--~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYG------VVLDEIKP---S--SAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHH------HHHHHSCT---T--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHH------HHHHHhcc---c--CChhHHHHHHHHHHH
Confidence 34456666666665554332 222 224445556666666644 66554432 1 356677888888888
Q ss_pred hccCCHHHHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 035659 293 AQLGAMDIGVQIHAKMKKQGI-KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF 371 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 371 (655)
...++.+.|.+.++++...+. +.+...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|+.++|.+.|
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888899999999999888764 44567778888999999999999999998 567889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHH---HHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 035659 372 SRMQEAKVKPNAVTF---TNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI 447 (655)
Q Consensus 372 ~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~ 447 (655)
+++.+. .|+.... ...+..+...|++++|..+|+++.+. ...+...++.+..+|.+.|++++|++.+++. ..
T Consensus 154 ~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999985 4664321 12223344568999999999999875 3456788999999999999999999999986 33
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHH-HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 448 VP-GASVWGALLGACKIHENVEL-AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 448 ~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
.| +..+|..++..+...|+.++ +..+++++++.+|+++.+ .+...+.+.++++..-
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 44 57789999999999999865 678999999999988754 3445566666665543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-17 Score=181.55 Aligned_cols=150 Identities=14% Similarity=0.189 Sum_probs=123.5
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH
Q 035659 171 EDDLFISNSLIHFYAICGDLAMAYCVFVMIG-------KKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTM 243 (655)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 243 (655)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445689999999999999999999997763 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc------h
Q 035659 244 VAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN------C 317 (655)
Q Consensus 244 ~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~------~ 317 (655)
+++|.++++.|+.. ++|.++|++|...| +.||..||++++.++.+.+-++.. +++ ..++.|+ .
T Consensus 204 ntLI~glcK~G~~~-----e~A~~Ll~EM~~kG-~~PD~vtY~~ll~~~eR~~vL~~V----rkv-~P~f~p~~~~~~~~ 272 (1134)
T 3spa_A 204 AAALQCMGRQDQDA-----GTIERCLEQMSQEG-LKLQALFTAVLLSEEDRATVLKAV----HKV-KPTFSLPPQLPPPV 272 (1134)
T ss_dssp HHHHHHHHHHTCCH-----HHHHHHHHHHHHHT-CCSHHHHHHSCCCHHHHHHHHHHH----GGG-CCCCCCCCCCCCCC
T ss_pred HHHHHHHHhCCCcH-----HHHHHHHHHHHHcC-CCCChhhcccccChhhHHHHHHHH----HHh-CcccCCCCCCcccc
Confidence 99999999998752 38899999999998 999999999998766554333222 222 2344444 5
Q ss_pred hhHHHHHHHHHhcC
Q 035659 318 YLTTSLIDMYTKCG 331 (655)
Q Consensus 318 ~~~~~li~~~~~~g 331 (655)
.+...|.+.|.+.+
T Consensus 273 ~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 273 NTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCTTTHHHHCCCS
T ss_pred cchHHHHHHHccCC
Confidence 56677888888766
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.7e-16 Score=157.80 Aligned_cols=271 Identities=11% Similarity=0.005 Sum_probs=165.7
Q ss_pred CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHH
Q 035659 138 NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISG 214 (655)
Q Consensus 138 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 214 (655)
+...+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45568888888889999999999999998876 56788899999999999999999999988754 467889999999
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHh
Q 035659 215 FVQGGFFEKAIELYREMEMENVKPDE-VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACA 293 (655)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~ 293 (655)
|.+.|++++|+..|+++.+.. |+. ..+..+ ......+..+...+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNK--------------------------------KGSPGLTRRMSKSPV 188 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------------------------------
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhh--------------------------------ccchHHHHHHHHHHh
Confidence 999999999999999987642 221 111110 001122333344444
Q ss_pred ccCCHHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKKQGIK-LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALD 369 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 369 (655)
..|++++|.+.++++.+.... .+..++..+...|.+.|++++|.+.|+++.+ .+..+|+.+...|...|++++|+.
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555554311 1344555555555555555555555555432 244555666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCc----------cCCcchHHHHHHHHHhcCCHHHHH
Q 035659 370 LFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV----------VPGVKHYTCMVDMLGRAGLLDEAV 439 (655)
Q Consensus 370 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----------~p~~~~y~~li~~~~~~g~~~~A~ 439 (655)
.|+++.+.. +.+..++..+..++...|++++|...|+.+.+...- ..+...|..+..++...|+.+.|.
T Consensus 269 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 269 AYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 666655531 123455555666666666666666666665532100 002456677777777777777777
Q ss_pred HHHHh
Q 035659 440 EFIEK 444 (655)
Q Consensus 440 ~~~~~ 444 (655)
++.++
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 66655
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.8e-16 Score=157.02 Aligned_cols=261 Identities=13% Similarity=-0.020 Sum_probs=214.1
Q ss_pred CHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchh
Q 035659 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318 (655)
Q Consensus 239 ~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 318 (655)
+...+..+...+.+.|+++ +|+..|+++.... +.+..++..+..++...|++++|...++++.+.. +.+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~------~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 134 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLP------VTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLK 134 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHH------HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred chhHHHHHHHHHHHCCCHH------HHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 4556888888999999976 9999999998764 5578899999999999999999999999999875 45688
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHH
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKSRD-------------VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK-PNAV 384 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~ 384 (655)
++..+...|.+.|++++|.+.|+++.+.+ ...+..+...+...|++++|+.+|+++...... ++..
T Consensus 135 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 214 (365)
T 4eqf_A 135 ALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH
Confidence 99999999999999999999999886421 123344578888999999999999999986422 1578
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACK 462 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 462 (655)
.+..+...+...|++++|...|+.+.+. ...+...|..+..+|.+.|++++|++.|+++ ...| +..+|..+...+.
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 8999999999999999999999999864 2335778999999999999999999999986 3344 4788999999999
Q ss_pred hcCCHHHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 463 IHENVELAEYACSHLLELEPE------------NHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
..|++++|...+++++++.|. +...+..++.++...|+.+.+.++.+.
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999998766 367889999999999999998877654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-15 Score=150.69 Aligned_cols=261 Identities=13% Similarity=-0.004 Sum_probs=217.7
Q ss_pred CHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchh
Q 035659 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY 318 (655)
Q Consensus 239 ~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 318 (655)
+...+..+...+...|+++ +|+.+|+++.... +.+...+..+..++...|++++|.+.++++.+.. +.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~------~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 90 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLA------EAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIA 90 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHH------HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hhHHHHHHHHHHHHhccHH------HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHH
Confidence 3455677778888889866 9999999998754 4577888899999999999999999999999875 55788
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCC
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTM--------------IA-GFAMYGCGREALDLFSRMQEAKVK 380 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~ 380 (655)
++..+...|.+.|++++|.+.|+++.+. +...+..+ .. .+...|++++|...++++.+.. +
T Consensus 91 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~ 169 (327)
T 3cv0_A 91 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-P 169 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-C
Confidence 8999999999999999999999987542 33333333 22 3677889999999999998864 3
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHH
Q 035659 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALL 458 (655)
Q Consensus 381 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 458 (655)
.+...+..+...+...|++++|..+++.+.+. ...+...+..+...|.+.|++++|.+.++++ ...| +..+|..+.
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 36788888999999999999999999999864 2234678999999999999999999999886 3333 578899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 459 GACKIHENVELAEYACSHLLELEPE------------NHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
..+...|++++|...++++++..|. +...+..++.+|...|++++|.++++..
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999998 6889999999999999999999988643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.2e-13 Score=148.83 Aligned_cols=405 Identities=12% Similarity=0.083 Sum_probs=295.3
Q ss_pred CcccHHHHHHHhcCcchH---HHHHHHHHHhC--CCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHH
Q 035659 37 HPHPVFSLIKQCKNIKQL---KQIHTQMLRTG--LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIR 111 (655)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g--~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~ 111 (655)
++.-.....+++...+.+ -.+++.++..+ +.-+..+.|.|+....+...++..+...-++.. + ...+..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~---d---~~eIA~ 1057 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNY---D---APDIAN 1057 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhc---c---HHHHHH
Confidence 344445556666666665 44555554221 223456777787776666533555555544422 2 344677
Q ss_pred HHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 035659 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLA 191 (655)
Q Consensus 112 ~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 191 (655)
.+...|.+++|..+|++. .. .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|+++
T Consensus 1058 Iai~lglyEEAf~IYkKa-~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKF-DV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHhCCCHHHHHHHHHHc-CC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 888899999999999986 21 1122233332 667899998888754 45778999999999999999
Q ss_pred HHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHH
Q 035659 192 MAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHE 271 (655)
Q Consensus 192 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~ 271 (655)
+|...|.+. .|...|..++..+.+.|++++|++.|....+.. ++....+.++.+|++.++++ + ++-|
T Consensus 1123 EAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rle------e-le~f-- 1189 (1630)
T 1xi4_A 1123 EAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA------E-LEEF-- 1189 (1630)
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHH------H-HHHH--
Confidence 999999765 678889999999999999999999999877764 34333445889999998764 3 3333
Q ss_pred HHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHH
Q 035659 272 LQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVW 351 (655)
Q Consensus 272 m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 351 (655)
.. .++...|..+...|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|
T Consensus 1190 -I~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aW 1253 (1630)
T 1xi4_A 1190 -IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTW 1253 (1630)
T ss_pred -Hh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHH
Confidence 21 356677788999999999999999999985 38999999999999999999999987 566899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHH
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLG 430 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~ 430 (655)
..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++... ++.+. ...|+-|..+|.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHH
Confidence 9999999999999888887653 33466677789999999999999999998776 34432 446666666666
Q ss_pred h--cCCHHHHHHHHHh-CCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHhc------------cCCCCcchHH
Q 035659 431 R--AGLLDEAVEFIEK-MPIVP------GASVWGALLGACKIHENVELAEYACSHLLE------------LEPENHGALV 489 (655)
Q Consensus 431 ~--~g~~~~A~~~~~~-m~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------------~~p~~~~~~~ 489 (655)
+ -+++.++.++|.. +.+.| +...|..+.-.|.+.|+++.|....-.-.. ..+.|+..|.
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyy 1405 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYY 1405 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHH
Confidence 5 4567777777755 44333 467899999999999999988833222211 1366777888
Q ss_pred HHHHHHHhcC
Q 035659 490 LLSNIYAKTG 499 (655)
Q Consensus 490 ~l~~~~~~~g 499 (655)
..+.-|...+
T Consensus 1406 kai~Fyl~~~ 1415 (1630)
T 1xi4_A 1406 RAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHhhC
Confidence 7777777665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.1e-17 Score=174.65 Aligned_cols=151 Identities=14% Similarity=0.110 Sum_probs=128.1
Q ss_pred eeHHHHHHHHHHhCCChhHHHHHHHHHH---HCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC
Q 035659 205 VVSWNSMISGFVQGGFFEKAIELYREME---MENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD 281 (655)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~ 281 (655)
..+||+||++|++.|++++|.++|++|. ..|+.||.+|||+||.+|++.|+++ +|.++|++|...| +.||
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~------eA~~Lf~eM~~~G-~~PD 199 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK------ELVYVLFMVKDAG-LTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHTT-CCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHH------HHHHHHHHHHHcC-CCCc
Confidence 3589999999999999999999998876 4589999999999999999999977 9999999999998 9999
Q ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHHHHH
Q 035659 282 EFTFVSVLSACAQLGA-MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-----DVFVWSTMI 355 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li 355 (655)
.+||+++|.++++.|. .+.|.+++++|.+.|+.||..+|+.++..+.+.+-++.+.+++..+..+ .+.+...|.
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHH
Confidence 9999999999999998 5789999999999999999999999998888776666666655544421 133444455
Q ss_pred HHHHHcC
Q 035659 356 AGFAMYG 362 (655)
Q Consensus 356 ~~~~~~g 362 (655)
..|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=145.89 Aligned_cols=372 Identities=12% Similarity=-0.050 Sum_probs=216.6
Q ss_pred cchHHHHHHHHHhCCCcHHHHHHHHHhhhc----CC--CCC-CcchHHHHHHHHHccCCchHHHHHHHHHHHhC------
Q 035659 103 LYTWNTLIRAYSSSAEPIQSFMIFLQLVYN----SP--YFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSS------ 169 (655)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------ 169 (655)
+..||.|-..+...|++++|++.|++.... .+ ..| ...+|..+..++...|++++|...++.+++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345677766777777777777777654211 11 122 23456667777777777777777777665431
Q ss_pred C-CCChhHHHHHHHHHHhc--CCHHHHHHHHhhcCC--C-CeeHHHHHHHH---HHhCCChhHHHHHHHHHHHCCCCCCH
Q 035659 170 F-EDDLFISNSLIHFYAIC--GDLAMAYCVFVMIGK--K-DVVSWNSMISG---FVQGGFFEKAIELYREMEMENVKPDE 240 (655)
Q Consensus 170 ~-~~~~~~~~~li~~~~~~--g~~~~A~~~f~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~ 240 (655)
. .....+++.+..++.+. +++++|...|++..+ | +...+..+... +...++.++|++.|++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 0 11234555555455544 357788888876643 3 34444444433 344577778888887776643 2234
Q ss_pred hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhH
Q 035659 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLT 320 (655)
Q Consensus 241 ~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 320 (655)
.++..+...+...+..... .++|.+.+++..... +.+...+..+...+...|++++|...+.++.+.. +.+..++
T Consensus 210 ~~~~~l~~~~~~~~~~~~~--~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEE--EGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHCC--------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 5555555554443322110 238888888877643 4556677888888888888888888888888764 4456666
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 035659 321 TSLIDMYTKC-------------------GNLDKALEVFHTVK---SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAK 378 (655)
Q Consensus 321 ~~li~~~~~~-------------------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 378 (655)
..+...|... +..+.|...|+... ..+..+|..+...|...|++++|++.|++..+..
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 6666665432 23566777776654 3466789999999999999999999999998854
Q ss_pred CCCCHH--HHHHHHH-HHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhH
Q 035659 379 VKPNAV--TFTNVLC-ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASV 453 (655)
Q Consensus 379 ~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~ 453 (655)
..|... .+..+.. .....|+.++|+..|.+..+ +.|+....... .+.+.+++++. .. +.+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHH
Confidence 333221 1222222 34578999999999998874 45654332222 23333444332 22 235789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 035659 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 492 (655)
|..|...+...|++++|++.++++++++|.++.+..-++
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999999999999988877665543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-14 Score=142.00 Aligned_cols=269 Identities=13% Similarity=0.013 Sum_probs=145.5
Q ss_pred chHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHH
Q 035659 140 FTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFV 216 (655)
Q Consensus 140 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 216 (655)
..+..+...+...|++++|..+++.+++.. +.+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 344455555556666666666666666554 34555666666677777777777777765543 34566777777777
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--Hh
Q 035659 217 QGGFFEKAIELYREMEMENVKPDE-VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSA--CA 293 (655)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~--~~ 293 (655)
..|++++|++.|+++.+.. |+. ..+..+.. ..|+......+... +.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ--PQYEQLGSVNLQ-----------------------------ADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTTTC-------------------------------------------------CCTT
T ss_pred HcCCHHHHHHHHHHHHHhC--CccHHHHHHHhH-----------------------------HHHHHHHHHHHHHhHHHH
Confidence 7888888888877777652 221 11111100 01111111111111 34
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDL 370 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 370 (655)
..|++++|...+.++.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+..
T Consensus 150 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555555555443 23445555555555555555555555555432 2345555666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-------------cchHHHHHHHHHhcCCHHH
Q 035659 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-------------VKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 371 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~~~y~~li~~~~~~g~~~~ 437 (655)
|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+. .|+ ...|..+..+|.+.|+.++
T Consensus 229 ~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 229 YNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 66665532 223455556666666666666666666665543 222 4456666666666666666
Q ss_pred HHHHHHhC
Q 035659 438 AVEFIEKM 445 (655)
Q Consensus 438 A~~~~~~m 445 (655)
|..++++.
T Consensus 305 A~~~~~~~ 312 (327)
T 3cv0_A 305 VELTYAQN 312 (327)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHHH
Confidence 66666543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=142.60 Aligned_cols=243 Identities=9% Similarity=0.023 Sum_probs=197.7
Q ss_pred HhccCccccCCChHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 035659 250 CAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE--FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY 327 (655)
Q Consensus 250 ~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 327 (655)
....|++. +|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+..++..+...|
T Consensus 9 ~~~~g~y~------~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 9 AFYIGSYQ------QCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHTTCHH------HHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHH
Confidence 34456644 88888876543 44554 3556678899999999999976644 2356788899999999
Q ss_pred HhcCCHHHHHHHHhhcC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 035659 328 TKCGNLDKALEVFHTVK----SR-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402 (655)
Q Consensus 328 ~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 402 (655)
.+.|+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999863 23 566778888999999999999999987 45778888899999999999999
Q ss_pred HHHHHHcchhcCccCCcchH---HHHHHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 403 RMFFNQMEPVYGVVPGVKHY---TCMVDMLGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 403 ~~~~~~~~~~~~~~p~~~~y---~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
.+.|+.+.+. .|+.... ..++..+...|++++|..+|+++ ....+...|+.+..++...|++++|+..++++
T Consensus 150 ~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 150 RKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999864 4664211 22334455569999999999997 23357889999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchh-HHHHHHHHHhC
Q 035659 478 LELEPENHGALVLLSNIYAKTGKWDN-VSELRKHMRVS 514 (655)
Q Consensus 478 ~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 514 (655)
++.+|+++.++..++.++...|++++ +.++++++.+.
T Consensus 227 l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 227 LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999987 56888887764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.1e-14 Score=134.62 Aligned_cols=220 Identities=9% Similarity=-0.024 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---C-------hhHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---D-------VFVW 351 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-------~~~~ 351 (655)
...+..+...+...|++++|...+.++.+.. .+..++..+...|...|++++|.+.|+...+. + ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467778888999999999999999999987 78889999999999999999999999987642 1 5789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHh
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR 431 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~ 431 (655)
..+...|...|++++|+..|++.... .|+. ..+...|++++|...++.+... ...+...+..+...|..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 99999999999999999999999984 4553 3456678999999999998753 22346788899999999
Q ss_pred cCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 432 AGLLDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 432 ~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
.|++++|.+.+++. .. ..+..+|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999987 22 23578899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 035659 510 HMRVS 514 (655)
Q Consensus 510 ~m~~~ 514 (655)
...+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-13 Score=128.82 Aligned_cols=194 Identities=14% Similarity=0.032 Sum_probs=148.7
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035659 314 KLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390 (655)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 390 (655)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +-+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777788888888888888888887654 356778888888888888888888888888743 22456777777
Q ss_pred HHHHcc-----------CcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHH
Q 035659 391 CACSHS-----------GLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGAL 457 (655)
Q Consensus 391 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 457 (655)
.++... |++++|...|+...+. .|+ ...+..+..+|...|++++|++.|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 788888 9999999999998854 554 677888999999999999999999886 222678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 458 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
...+...|++++|+..++++++.+|+++..+..++.++...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.7e-13 Score=130.10 Aligned_cols=238 Identities=11% Similarity=-0.065 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 035659 262 PNEALSIFHELQLSKNVNP--DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEV 339 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (655)
+++|+..|+++.......+ +..++..+...+...|++++|...+.++.+.. +.+..++..+...|.+.|++++|.+.
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 4599999999987641122 45678888999999999999999999999875 45788999999999999999999999
Q ss_pred HhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCcc
Q 035659 340 FHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416 (655)
Q Consensus 340 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 416 (655)
|++..+ .+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++..... .
T Consensus 100 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~ 174 (275)
T 1xnf_A 100 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---S 174 (275)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---S
T ss_pred HHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc---C
Confidence 998764 46789999999999999999999999999984 466555555556667789999999999888764 2
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-----ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 417 p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
|+......++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|.+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-- 252 (275)
T 1xnf_A 175 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH-- 252 (275)
T ss_dssp CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH--
T ss_pred CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH--
Confidence 33333345777888889999999999886 33332 57888999999999999999999999999999775544
Q ss_pred HHHHHHhcCCchhHHHHH
Q 035659 491 LSNIYAKTGKWDNVSELR 508 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~ 508 (655)
..++...|++++|.+.+
T Consensus 253 -~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 -RYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHhhHHHH
Confidence 56777888888887765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-13 Score=127.57 Aligned_cols=236 Identities=12% Similarity=0.014 Sum_probs=194.5
Q ss_pred HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--Cc-
Q 035659 240 EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK--LN- 316 (655)
Q Consensus 240 ~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~- 316 (655)
...+..+...+...|+++ +|+..|++..... .+...+..+..++...|++++|...+..+.+.... ++
T Consensus 5 a~~~~~~g~~~~~~~~~~------~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFD------EAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhccHH------HHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence 346777888888999976 9999999998764 67788999999999999999999999999875311 11
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 035659 317 ---CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCA 392 (655)
Q Consensus 317 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 392 (655)
..++..+...|.+.|++++|.+.|++..+.+.. ...+...|++++|+..++++... .| +...+..+...
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHH
Confidence 578999999999999999999999987642221 34577788999999999999884 34 45677788888
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELA 470 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 470 (655)
+...|++++|...|+.+.+. ...+...|..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999864 2335778999999999999999999999886 3334 478899999999999999999
Q ss_pred HHHHHHHhccC------CCCcchHHHHHH
Q 035659 471 EYACSHLLELE------PENHGALVLLSN 493 (655)
Q Consensus 471 ~~~~~~~~~~~------p~~~~~~~~l~~ 493 (655)
...+++++++. |.+...+..+..
T Consensus 227 ~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 227 LETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 99999999998 776665555543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=138.02 Aligned_cols=372 Identities=7% Similarity=-0.056 Sum_probs=195.4
Q ss_pred HHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCc---hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 035659 112 AYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF---RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICG 188 (655)
Q Consensus 112 ~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 188 (655)
.+.+.|++++|+..|++. ...| +...+..+-..+...|+. ++|...++...+. +...+..|..++...|
T Consensus 12 ~~~~~g~~~~A~~~~~~a-a~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQL-AELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHhCCCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 334445555555555554 2222 122222222223333444 4555555554432 3333344444333333
Q ss_pred -----CHHHHHHHHhhcCCC-CeeHHHHHHHHHHhCCChhH---HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccC
Q 035659 189 -----DLAMAYCVFVMIGKK-DVVSWNSMISGFVQGGFFEK---AIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFG 259 (655)
Q Consensus 189 -----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~ 259 (655)
+.++|...|++..++ +..++..|...|...+..++ +++.+......| +...+..+...|...+.++..
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 445555555444332 33345555555554443322 333333333332 234444555555555543311
Q ss_pred CChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc----CC
Q 035659 260 RWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG---AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC----GN 332 (655)
Q Consensus 260 ~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~ 332 (655)
.+++..+++.... + .|+ .+..+...+...| +.++|.+.+.+..+.| +++...+..|..+|... ++
T Consensus 161 --~~~a~~~~~~a~~-~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 161 --LDDVERICKAALN-T--TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp --HHHHHHHHHHHTT-T--CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred --HHHHHHHHHHHHc-C--CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 1234444444322 1 233 6666666777777 7788888888887776 45555556677777654 68
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----cHHHHHH
Q 035659 333 LDKALEVFHTVKSRDVFVWSTMIAG-F--AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG-----LVDEGRM 404 (655)
Q Consensus 333 ~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~ 404 (655)
.++|.+.|+.....+...+..+... | ...++.++|+++|++..+.| +...+..+...|. .| ++++|..
T Consensus 233 ~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 233 EKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8888888887773356677777666 3 35778888888888888766 5556666665555 44 8888888
Q ss_pred HHHHcchhcCccCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHH
Q 035659 405 FFNQMEPVYGVVPGVKHYTCMVDMLGR----AGLLDEAVEFIEKMPIVPGASVWGALLGACKI----HENVELAEYACSH 476 (655)
Q Consensus 405 ~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~ 476 (655)
.|+... .-++..+..|..+|.. ..++++|..+|++.-..-+......|...|.. ..+.++|...+++
T Consensus 309 ~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 309 HFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 888775 2345566677777765 33788888888876223345556666666653 4578888888888
Q ss_pred HhccCCCCcchHHHHHHHH--HhcCCchhHHHHHHHHHh
Q 035659 477 LLELEPENHGALVLLSNIY--AKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 477 ~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~ 513 (655)
+.+.+++.. ...+..+. ...++.++|.++.++.++
T Consensus 384 A~~~g~~~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 384 AKAQDTPEA--NDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHTTCCHHH--HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 888775432 23333332 222345556666555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=126.92 Aligned_cols=245 Identities=13% Similarity=0.057 Sum_probs=179.4
Q ss_pred hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--hh
Q 035659 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN--CY 318 (655)
Q Consensus 241 ~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~ 318 (655)
..+......+...|+++ +|+..|++..... +.+...+..+..++...|++++|.+.+.++.+.+..++ ..
T Consensus 4 ~~~~~~a~~~~~~~~~~------~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 75 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYA------EAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSA 75 (272)
T ss_dssp -CHHHHHHHHHTTTCHH------HHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHH
T ss_pred HHHHHHHHHHHHhcCHH------HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHH
Confidence 34555667777888866 9999999988753 33444778888888999999999999999888431122 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACS 394 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 394 (655)
.+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|++..+. .| +...+..+...+.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHH
Confidence 478888999999999999999988653 46678888999999999999999999988875 34 4555555552455
Q ss_pred ccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------hhHHHHHHHH
Q 035659 395 HSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGL---LDEAVEFIEKM----PIVPG------ASVWGALLGA 460 (655)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~ll~~ 460 (655)
..+++++|...|+.+.+. .|+ ...+..+...+...|+ +++|...+++. ...|+ ..+|..+...
T Consensus 154 ~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 556999999999988754 444 5667777888888787 77777777665 11233 2577778888
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 035659 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498 (655)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 498 (655)
+...|++++|...++++++++|+++.+...+.......
T Consensus 231 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 88899999999999999999998887776665554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-11 Score=129.66 Aligned_cols=347 Identities=9% Similarity=-0.042 Sum_probs=237.2
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH---HHHHHHHhhcCCCCeeHHHHHHHHHHhCC--
Q 035659 145 VIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDL---AMAYCVFVMIGKKDVVSWNSMISGFVQGG-- 219 (655)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 219 (655)
+...+.+.|++++|.++++.+.+.| +...+..|..+|...|+. ++|...|++..+.+..++..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4556677899999999999999887 334455677777778888 99999999888778888888888666665
Q ss_pred ---ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC
Q 035659 220 ---FFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG 296 (655)
Q Consensus 220 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g 296 (655)
++++|+..|++..+.|.. ..+..|...|...+..... .++.+.+.+....+ +......+...+...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~---~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPN---VNAQQQISQWQAAG----YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTT---CCHHHHHHHHHHHT----CTTHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHCC----CHHHHHHHHHHHHcCC
Confidence 788999999999987643 3677777777776654433 26777777776655 2335556666676666
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC---CHHHHHHHHhhcCCC---ChhHHHHHHHHHHHc----CChHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG---NLDKALEVFHTVKSR---DVFVWSTMIAGFAMY----GCGRE 366 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~ 366 (655)
.++.+......+.+.-...++..+..|..+|.+.| +.++|.+.|+...+. +...+..+...|... ++.++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 44443333332322222334448889999999999 999999999987543 344446777777554 68999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-H--HccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcC-----CHHHH
Q 035659 367 ALDLFSRMQEAKVKPNAVTFTNVLCA-C--SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG-----LLDEA 438 (655)
Q Consensus 367 A~~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g-----~~~~A 438 (655)
|+.+|++.. .| +...+..+... + ...++.++|..+|+...+. | +...+..|..+|. .| ++++|
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 999999988 43 44555555555 3 5689999999999998764 4 5667888888887 55 99999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCchhHHHHHHH
Q 035659 439 VEFIEKMPIVPGASVWGALLGACKI----HENVELAEYACSHLLELEPENHGALVLLSNIYAK----TGKWDNVSELRKH 510 (655)
Q Consensus 439 ~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 510 (655)
.++|++.- ..+...+..|...|.. ..+.++|...++++.+.+ ++.+...|+.+|.. ..+.++|...++.
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99999987 6677888888877766 349999999999998754 56788899999985 4588999999999
Q ss_pred HHhCCC
Q 035659 511 MRVSGL 516 (655)
Q Consensus 511 m~~~g~ 516 (655)
..+.|.
T Consensus 384 A~~~g~ 389 (452)
T 3e4b_A 384 AKAQDT 389 (452)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 888775
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-11 Score=119.59 Aligned_cols=224 Identities=14% Similarity=-0.005 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHH
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK----CGNLDKALEVFHTVKS-RDVFVWSTMI 355 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 355 (655)
+..++..+...+...|++++|.+.+.+..+. .+...+..+...|.. .|++++|.+.|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4567777888899999999999999999983 355678889999999 9999999999998764 4678899999
Q ss_pred HHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 356 AGFAM----YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH----SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 356 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 77888888888888 99999999999999874 3 5667888888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh--
Q 035659 428 MLGR----AGLLDEAVEFIEKMPIVPGASVWGALLGACKI----HENVELAEYACSHLLELEPENHGALVLLSNIYAK-- 497 (655)
Q Consensus 428 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 497 (655)
.|.. .+++++|.+.+++.--..+...+..+...+.. .+++++|...++++.+.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999886222367788889999999 9999999999999999876 6788999999999
Q ss_pred --cCCchhHHHHHHHHHhCCC
Q 035659 498 --TGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 498 --~g~~~~a~~~~~~m~~~g~ 516 (655)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999888663
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7.4e-12 Score=120.53 Aligned_cols=201 Identities=12% Similarity=0.017 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 035659 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFA 359 (655)
Q Consensus 283 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 359 (655)
..+..+...+...|++++|.+.++++.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 445556666666677777777777666653 33455666666666666666666666665432 24455555666666
Q ss_pred HcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHH
Q 035659 360 MYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEA 438 (655)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 438 (655)
..|++++|+++|+++...+..| +...+..+...+...|++++|..+++.+.+. ...+...+..+...|.+.|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666655522233 2344445555555566666666666655542 111244455555555555555555
Q ss_pred HHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 439 VEFIEKM-PIV-PGASVWGALLGACKIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 439 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
.+.++++ ... .+...+..+...+...|+.++|...++++++..|+++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 5555554 222 23344555555555555555555555555555555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=124.57 Aligned_cols=208 Identities=13% Similarity=0.100 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAG 357 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 357 (655)
....+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34455556666667777777777777776643 34556666666667777777777766666532 345566666666
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 437 (655)
|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+++.+.+. ...+...+..+...|.+.|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666666542 224455555666666666666666666666542 12234455556666666666666
Q ss_pred HHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 035659 438 AVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492 (655)
Q Consensus 438 A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 492 (655)
|.+.++++ .. ..+..+|..+...+...|++++|...++++++..|++..++..+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 66666554 11 123455566666666666666666666666666666555544443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.44 E-value=8e-12 Score=120.29 Aligned_cols=197 Identities=12% Similarity=-0.025 Sum_probs=172.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 393 (655)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788889999999999999999998753 467889999999999999999999999998863 33677888888999
Q ss_pred HccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHH
Q 035659 394 SHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELA 470 (655)
Q Consensus 394 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 470 (655)
...|++++|..+++.+.+. +..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999862 3455 3667888999999999999999999886 2233 578899999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 471 EYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 471 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
...++++++..|.+...+..++.+|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999987753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=116.83 Aligned_cols=194 Identities=12% Similarity=0.092 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035659 318 YLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 394 (655)
.++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|+++.... +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3444444444445555555554444321 233445555555555555555555555555432 223445555555555
Q ss_pred cc-CcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHH
Q 035659 395 HS-GLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELA 470 (655)
Q Consensus 395 ~~-g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 470 (655)
.. |++++|..+++.+.+. +..|+ ...+..+...|...|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 66 6666666666655541 22222 344555556666666666666666554 1122 345566666666666666666
Q ss_pred HHHHHHHhccCC-CCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 471 EYACSHLLELEP-ENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 471 ~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
...++++++..| .+...+..++..+...|+.++|..+++.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666666666 6666666666666666666666666666544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-11 Score=115.13 Aligned_cols=208 Identities=13% Similarity=-0.022 Sum_probs=176.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAG 357 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 357 (655)
+...+..+...+...|++++|.+.+..+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+...|..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 45677888889999999999999999999875 45678899999999999999999999998753 467789999999
Q ss_pred HHHc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCH
Q 035659 358 FAMY-GCGREALDLFSRMQEAKVKPN-AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL 435 (655)
Q Consensus 358 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 435 (655)
|... |++++|+..|+++.+.+..|+ ...+..+...+...|++++|...++.+.+. ...+...+..+...|.+.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 9999 999999999999988433444 567788888999999999999999998864 123477889999999999999
Q ss_pred HHHHHHHHhC-CCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 035659 436 DEAVEFIEKM-PIV--PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLL 491 (655)
Q Consensus 436 ~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 491 (655)
++|.+.++++ ... .+...+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999886 222 3567787788888999999999999999999999887665544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=127.24 Aligned_cols=239 Identities=10% Similarity=-0.038 Sum_probs=126.8
Q ss_pred CCCcHHHHHHHHHhhhcCCC-CC--CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 035659 116 SAEPIQSFMIFLQLVYNSPY-FP--NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAM 192 (655)
Q Consensus 116 ~g~~~~A~~~~~~m~~~~~~-~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 192 (655)
.|++++|+..|+++ ..... .+ +..++..+...+...|++++|...++.+++.. +.+..++..+...|...|++++
T Consensus 18 ~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQI-LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHH-HTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 35556666666665 22211 11 23344455555555566666666666555553 3345555555555555555555
Q ss_pred HHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHH
Q 035659 193 AYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269 (655)
Q Consensus 193 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~ 269 (655)
|...|++..+ .+..+|..+...|.+.|++++|+..|+++.+.
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----------------------------------- 140 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----------------------------------- 140 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------------------------------
Confidence 5555554432 23445555555555555555555555554432
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC--
Q 035659 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD-- 347 (655)
Q Consensus 270 ~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 347 (655)
.|+.......+..+...|++++|...+....... +++...+ .++..+...++.++|.+.++.....+
T Consensus 141 ---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (275)
T 1xnf_A 141 ---------DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTS 209 (275)
T ss_dssp ---------CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred ---------CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence 2222222233333344566666666665555543 2233333 35555666666667777776665432
Q ss_pred -----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 035659 348 -----VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 348 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 406 (655)
...|..+...|...|++++|...|++.... .|+. +.....++...|++++|.+.+
T Consensus 210 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 356777777788888888888888887764 3432 122234566677777777665
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-12 Score=122.64 Aligned_cols=197 Identities=11% Similarity=0.081 Sum_probs=155.3
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLC 391 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 391 (655)
.....+..+...+.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556778888899999999999999998854 367789999999999999999999999998863 336778888889
Q ss_pred HHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHH
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVEL 469 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~ 469 (655)
.+...|++++|.++++.+.+. ...+...+..+...|.+.|++++|.+.++++ .. ..+...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999864 2335678889999999999999999999886 22 2357889999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 470 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
|...++++++..|.+..++..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998774
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-12 Score=118.23 Aligned_cols=192 Identities=14% Similarity=0.074 Sum_probs=86.5
Q ss_pred CCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch
Q 035659 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317 (655)
Q Consensus 238 p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 317 (655)
++...+..+...+.+.|+++ +|+..|++..... +.+...+..+..++.+.|++++|...++++++.. +.+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~------~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~ 73 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYD------AALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYL 73 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHH------HHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CcHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 34445555555555566544 6666666655432 3344555555555666666666666666665543 3344
Q ss_pred hhHHHHHHHHHhc-----------CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 035659 318 YLTTSLIDMYTKC-----------GNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA 383 (655)
Q Consensus 318 ~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 383 (655)
..+..+..+|.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+.
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 151 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence 4555555555555 444444444444321 123344444444444444444444444444433 334
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHH
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIE 443 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~ 443 (655)
..+..+..++...|++++|...|+.+.+. .| +...+..+..++.+.|++++|.+.++
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444444444444444444321 22 23334444444444444444444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-11 Score=119.49 Aligned_cols=226 Identities=10% Similarity=-0.019 Sum_probs=185.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--RDV----FVWSTMIAG 357 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~ 357 (655)
.+......+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44556677889999999999999999865 44566899999999999999999999998765 222 348899999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~ 436 (655)
|...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+. .| +...|..+...+...++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998853 235678888999999999999999999999853 44 4566777773444556999
Q ss_pred HHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHHhccC---CCC-----cchHHHHHHHHHhcCCchh
Q 035659 437 EAVEFIEKM-PIVPG-ASVWGALLGACKIHEN---VELAEYACSHLLELE---PEN-----HGALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 437 ~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~ 503 (655)
+|.+.+++. ...|+ ...|..+...+...|+ .++|...++++++.. |+. ..+|..++..|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999887 33444 6788888888888888 888999999998875 432 2578889999999999999
Q ss_pred HHHHHHHHHhC
Q 035659 504 VSELRKHMRVS 514 (655)
Q Consensus 504 a~~~~~~m~~~ 514 (655)
|.+.+++..+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998874
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-11 Score=126.47 Aligned_cols=244 Identities=9% Similarity=0.056 Sum_probs=192.8
Q ss_pred hhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchhh
Q 035659 241 VTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGA-MDIGVQIHAKMKKQGIKLNCYL 319 (655)
Q Consensus 241 ~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~ 319 (655)
..|..+...+.+.|+++ +|++.|++..... +-+...|..+..++...|+ +++|...++++++.. +.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~------~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a 168 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSE------RAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHHTCCCH------HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHCCChH------HHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHH
Confidence 45666667777778866 9999999998753 4457788888888999996 999999999999876 457888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH- 395 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 395 (655)
|+.+..+|.+.|++++|+..|+++.+ .+...|..+...+.+.|++++|+..|+++++... -+...|..+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHh
Confidence 99999999999999999999998763 4778899999999999999999999999988532 256778888888888
Q ss_pred cCcHHHH-----HHHHHHcchhcCccCC-cchHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcC-
Q 035659 396 SGLVDEG-----RMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAG--LLDEAVEFIEKMPIVPG-ASVWGALLGACKIHE- 465 (655)
Q Consensus 396 ~g~~~~a-----~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g--~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g- 465 (655)
.|..++| +..|+...+ +.|+ ...|..+..+|.+.| ++++|++.++++...|+ ...+..+...+...|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhc
Confidence 5654666 477887764 3454 567888888888888 58889888887744454 567788888887764
Q ss_pred --------CHHHHHHHHHHH-hccCCCCcchHHHHHHHHHh
Q 035659 466 --------NVELAEYACSHL-LELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 466 --------~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 497 (655)
..++|+.+++++ .+.+|.....|..++..+..
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999888888877776654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-12 Score=131.62 Aligned_cols=222 Identities=13% Similarity=0.050 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----CC-CchhhHHHHHHHHHhcCC--------------------HHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQG----IK-LNCYLTTSLIDMYTKCGN--------------------LDKA 336 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g----~~-~~~~~~~~li~~~~~~g~--------------------~~~A 336 (655)
..++..+...+...|++++|...+.++.+.. -. ....++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 4466777778888888888888888776531 11 124477788888888888 8888
Q ss_pred HHHHhhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCcHHHH
Q 035659 337 LEVFHTVKS-----R----DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV-KPN----AVTFTNVLCACSHSGLVDEG 402 (655)
Q Consensus 337 ~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a 402 (655)
.+.+++..+ . ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 888776532 1 234688888889999999999999988865311 112 23677788889999999999
Q ss_pred HHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHH
Q 035659 403 RMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG----ASVWGALLGACKIHENVELA 470 (655)
Q Consensus 403 ~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a 470 (655)
..+++...+...-.++ ..++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999987653211122 457788889999999999999998875 11122 55788888999999999999
Q ss_pred HHHHHHHhccC------CCCcchHHHHHHHHHhcCCchh
Q 035659 471 EYACSHLLELE------PENHGALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 471 ~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 503 (655)
...+++++++. +....++..++.+|...|+...
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999998863 2234567788888888887643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.8e-12 Score=129.09 Aligned_cols=269 Identities=14% Similarity=0.087 Sum_probs=210.8
Q ss_pred CCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-
Q 035659 237 KPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD----EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ- 311 (655)
Q Consensus 237 ~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~- 311 (655)
.+....+......+...|+++ +|+..|++..... +.+ ...+..+...+...|++++|...+.++.+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~------~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 77 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCR------AGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 77 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 344556677778888899966 9999999998754 223 356778888999999999999999987653
Q ss_pred ---CCC-CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC---------------
Q 035659 312 ---GIK-LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----RD----VFVWSTMIAGFAMYGC--------------- 363 (655)
Q Consensus 312 ---g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------- 363 (655)
+.. ....++..+...|...|++++|...|++..+ .+ ..++..+...|...|+
T Consensus 78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 212 2356788899999999999999999987653 12 3478888999999999
Q ss_pred -----hHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHH
Q 035659 364 -----GREALDLFSRMQEA----KVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDML 429 (655)
Q Consensus 364 -----~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~ 429 (655)
+++|+..+++.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99999999887542 1112 1346777888899999999999999998764222222 33788899999
Q ss_pred HhcCCHHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHH
Q 035659 430 GRAGLLDEAVEFIEKM----PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPEN------HGALVLLSNIY 495 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~ 495 (655)
...|++++|...+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 9999999999999875 11112 4678888999999999999999999999875332 55788999999
Q ss_pred HhcCCchhHHHHHHHHHh
Q 035659 496 AKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~ 513 (655)
...|++++|.+.+++..+
T Consensus 318 ~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.2e-11 Score=115.71 Aligned_cols=226 Identities=12% Similarity=0.006 Sum_probs=192.9
Q ss_pred CHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCC
Q 035659 239 DEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQ----LGAMDIGVQIHAKMKKQGIK 314 (655)
Q Consensus 239 ~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~ 314 (655)
+..++..+...+...++++ +|++.|++....+ +...+..+...+.. .+++++|...+.+..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~------~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFT------QAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred ChHHHHHHHHHHHhCCCHH------HHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--
Confidence 4566777788888888866 9999999998743 45677888888888 999999999999999976
Q ss_pred CchhhHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHH
Q 035659 315 LNCYLTTSLIDMYTK----CGNLDKALEVFHTVKS-RDVFVWSTMIAGFAM----YGCGREALDLFSRMQEAKVKPNAVT 385 (655)
Q Consensus 315 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 385 (655)
+...+..+..+|.. .+++++|.+.|++..+ .+..++..+...|.. .++.++|+..|++..+.+ +...
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 148 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 148 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence 67788899999999 9999999999998764 467889999999999 999999999999999876 5667
Q ss_pred HHHHHHHHHc----cCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCChhHHHHH
Q 035659 386 FTNVLCACSH----SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR----AGLLDEAVEFIEKMPIVPGASVWGAL 457 (655)
Q Consensus 386 ~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~l 457 (655)
+..+...+.. .+++++|...|+...+. .+...+..+..+|.. .+++++|.+.+++.-...+...+..+
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 224 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNL 224 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777777887 89999999999998764 246778889999999 99999999999886212247788888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhccCCCC
Q 035659 458 LGACKI----HENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 458 l~~~~~----~g~~~~a~~~~~~~~~~~p~~ 484 (655)
...+.. .+++++|...++++.+.+|++
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 899988 999999999999999999864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-12 Score=131.99 Aligned_cols=265 Identities=11% Similarity=0.005 Sum_probs=207.4
Q ss_pred hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----C-
Q 035659 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDE----FTFVSVLSACAQLGAMDIGVQIHAKMKKQ----G- 312 (655)
Q Consensus 242 t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g- 312 (655)
.+..+...+...|+++ +|+..|++..... +.+. ..+..+...+...|++++|...++++.+. +
T Consensus 50 ~l~~~g~~~~~~g~~~------~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 50 ELALEGERLCNAGDCR------AGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHHHTTCHH------HHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcHH------HHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 3445666778888866 9999999998854 2232 46788888999999999999999988764 1
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCC-----------------hHH
Q 035659 313 IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---------DVFVWSTMIAGFAMYGC-----------------GRE 366 (655)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~ 366 (655)
.+....++..+...|...|++++|.+.|++..+. ...+|..+...|...|+ +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 1234577888999999999999999999886531 24578888999999999 999
Q ss_pred HHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHHH
Q 035659 367 ALDLFSRMQEA----KVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 367 A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~ 437 (655)
|++.+++..+. +..+ ....+..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 99999887542 1111 2346777888899999999999999998764221122 2378889999999999999
Q ss_pred HHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCchh
Q 035659 438 AVEFIEKM----PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPEN------HGALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 438 A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~ 503 (655)
|.+.+++. +...+ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 361 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER 361 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence 99999875 11111 4678888999999999999999999999875332 3488899999999999999
Q ss_pred HHHHHHHHHhC
Q 035659 504 VSELRKHMRVS 514 (655)
Q Consensus 504 a~~~~~~m~~~ 514 (655)
|.+.+++..+.
T Consensus 362 A~~~~~~al~~ 372 (411)
T 4a1s_A 362 ALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987663
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=8e-12 Score=127.56 Aligned_cols=226 Identities=12% Similarity=0.104 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC-HHHHHHHHhhcCC---CChhHHHHHHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN-LDKALEVFHTVKS---RDVFVWSTMIAG 357 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 357 (655)
...|..+..++.+.|++++|.+.++++++.. +-+..+|+.+..+|.+.|+ +++|+..|+++.. .+...|+.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567778888899999999999999999976 5578899999999999997 9999999998764 477899999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHh-cCCH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGR-AGLL 435 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~-~g~~ 435 (655)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+.+.+. .| +...|+.+..+|.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999853 226788889999999999999999999999864 45 46789999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCC-ChhHHHHHHHHHHhcC--CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-------
Q 035659 436 DEA-----VEFIEKM-PIVP-GASVWGALLGACKIHE--NVELAEYACSHLLELEPENHGALVLLSNIYAKTG------- 499 (655)
Q Consensus 436 ~~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 499 (655)
++| ++.+++. .+.| +...|..+...+...| ++++|...++++ +.+|++..++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4667665 3445 4679999999999888 689999999998 888999999999999999875
Q ss_pred --CchhHHHHHHHH-Hh
Q 035659 500 --KWDNVSELRKHM-RV 513 (655)
Q Consensus 500 --~~~~a~~~~~~m-~~ 513 (655)
..++|.++++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 258899999987 44
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-12 Score=135.64 Aligned_cols=208 Identities=10% Similarity=-0.010 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH-HHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 035659 298 MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL-DKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSR 373 (655)
Q Consensus 298 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (655)
++.+.+.+....+.. +.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443322 34566666777777777777 777777776542 3466788888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcc---------CcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhc--------CCH
Q 035659 374 MQEAKVKPNAVTFTNVLCACSHS---------GLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRA--------GLL 435 (655)
Q Consensus 374 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~--------g~~ 435 (655)
..+. .|+...+..+...+... |++++|...|++..+. .| +...|..+..+|... |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8874 57778888888888888 9999999999998864 44 467888889999888 999
Q ss_pred HHHHHHHHhC-CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 436 DEAVEFIEKM-PIVP----GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 436 ~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
++|++.|++. ...| +...|..+...+...|++++|...++++++++|++..++..++.++...|++++|.+.++.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999886 4445 6789999999999999999999999999999999999999999999999999999876544
Q ss_pred H
Q 035659 511 M 511 (655)
Q Consensus 511 m 511 (655)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=123.70 Aligned_cols=265 Identities=15% Similarity=0.087 Sum_probs=205.4
Q ss_pred hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC
Q 035659 242 TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD----EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ----GI 313 (655)
Q Consensus 242 t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~ 313 (655)
.+......+...|+++ +|+..|+++.... +.+ ...+..+...+...|++++|.+.+.++.+. +.
T Consensus 7 ~l~~~g~~~~~~g~~~------~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 7 ELALEGERLCKSGDCR------AGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHHHTTCHH------HHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccHH------HHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc
Confidence 3444566777888866 9999999998754 223 357778888999999999999999987653 21
Q ss_pred C-CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------
Q 035659 314 K-LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----RD----VFVWSTMIAGFAMYGC-------------------- 363 (655)
Q Consensus 314 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~-------------------- 363 (655)
. ....++..+...|...|++++|...|++..+ .+ ..++..+...|...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 2 2366788899999999999999999988653 22 3478888899999999
Q ss_pred hHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCC
Q 035659 364 GREALDLFSRMQEA----KVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGL 434 (655)
Q Consensus 364 ~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~ 434 (655)
+++|.+.+++.... +..| ....+..+...+...|++++|...++...+...-.++ ...+..+...|...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 99999999887542 1111 2346777778899999999999999988754222222 3378888999999999
Q ss_pred HHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCC
Q 035659 435 LDEAVEFIEKM----PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPEN------HGALVLLSNIYAKTGK 500 (655)
Q Consensus 435 ~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~ 500 (655)
+++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999875 11122 5577888899999999999999999998875432 3478889999999999
Q ss_pred chhHHHHHHHHHhC
Q 035659 501 WDNVSELRKHMRVS 514 (655)
Q Consensus 501 ~~~a~~~~~~m~~~ 514 (655)
+++|.+.+++..+.
T Consensus 319 ~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 319 HDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-11 Score=108.40 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=123.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHH
Q 035659 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMV 426 (655)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li 426 (655)
+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|...+...... ...+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34567777777777777777777777777642 124566777777777888888888887777643 122355666677
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 504 (655)
..+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7777888888888877765 2223 4677888888888889999999999999999998888888999999999999999
Q ss_pred HHHHHHHHhC
Q 035659 505 SELRKHMRVS 514 (655)
Q Consensus 505 ~~~~~~m~~~ 514 (655)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9888887663
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-11 Score=126.75 Aligned_cols=201 Identities=11% Similarity=0.056 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CCCchhhHHHHHHHHHhcCC-----------------HHHHHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ----G-IKLNCYLTTSLIDMYTKCGN-----------------LDKALEV 339 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~ 339 (655)
...+..+...+...|++++|...+.++.+. + .+....++..+...|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 456777888888999999999998887764 1 12335578888889999999 8999888
Q ss_pred HhhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCcHHHHHHH
Q 035659 340 FHTVKS-----R----DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK-PN----AVTFTNVLCACSHSGLVDEGRMF 405 (655)
Q Consensus 340 ~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~ 405 (655)
+++..+ . ....|..+...|...|++++|+..|++..+.... ++ ...+..+...+...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 877542 1 2347888889999999999999999988763111 12 23677888889999999999999
Q ss_pred HHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 035659 406 FNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM-PI---VPG----ASVWGALLGACKIHENVELAEYA 473 (655)
Q Consensus 406 ~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 473 (655)
++...+...-..+ ...+..+...|...|++++|.+.+++. .+ .++ ..++..+...+...|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9988754211111 467888899999999999999999876 11 112 35778888999999999999999
Q ss_pred HHHHhccCC
Q 035659 474 CSHLLELEP 482 (655)
Q Consensus 474 ~~~~~~~~p 482 (655)
+++++++.+
T Consensus 366 ~~~al~~~~ 374 (411)
T 4a1s_A 366 AEQHLQLAX 374 (411)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHh
Confidence 999998865
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-09 Score=116.89 Aligned_cols=421 Identities=9% Similarity=0.017 Sum_probs=283.1
Q ss_pred HHHHHHHhCCCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCC---CCcchHHHHHHHHHhCCC---cHHHHHHHHHhh
Q 035659 57 IHTQMLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQ---PNLYTWNTLIRAYSSSAE---PIQSFMIFLQLV 130 (655)
Q Consensus 57 ~~~~~~~~g~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 130 (655)
.++..+... +-|...|..++..+.+.+ .++.|+.+|+++.. .....|..-+..-.+.+. .+.+..+|++.+
T Consensus 54 ~lE~~l~~n-p~d~~~W~~yi~~~~~~~--~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 54 KLNDMIEEQ-PTDIFLYVKLLKHHVSLK--QWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHC-cCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 444444443 358899999999999998 99999999998863 345568888888888888 999999999983
Q ss_pred hcCCCCCCcchHHHHHHHHHccCCc--------hHHHHHHHHHHH-hCC-CCC-hhHHHHHHHHHHh---------cCCH
Q 035659 131 YNSPYFPNEFTFPFVIKAAARLVQF--------RVGQAIHGMVIK-SSF-EDD-LFISNSLIHFYAI---------CGDL 190 (655)
Q Consensus 131 ~~~~~~pd~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~ 190 (655)
......|+...|..-+.-..+.++. +...++|+.++. .|. .++ ..+|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 3222247777777777666555543 344577877665 465 454 5688888876543 3457
Q ss_pred HHHHHHHhhcCC-CCe---eHHH---HHHHHHH----------hCCChhHHHHHHHHHHHC--CCC---CC---------
Q 035659 191 AMAYCVFVMIGK-KDV---VSWN---SMISGFV----------QGGFFEKAIELYREMEME--NVK---PD--------- 239 (655)
Q Consensus 191 ~~A~~~f~~~~~-~~~---~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~--g~~---p~--------- 239 (655)
+.++++|++... |-. ..|. .+...+. ....++.|...+.++... ++. |.
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 889999988765 211 2332 2222210 011234445555543221 111 10
Q ss_pred -----------HhhHHHHHHHHhccCc-cccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHH-HHHH
Q 035659 240 -----------EVTMVAVLSACAKKRD-LEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV-QIHA 306 (655)
Q Consensus 240 -----------~~t~~~ll~~~~~~~~-~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~ 306 (655)
...|...+.---..+. ++.....+.+..+|++.... ++-+...|...+.-+...|+.+.|. ++++
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1223333332222210 00000012455678887765 3556777777777778888988996 9999
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-------------C------------ChhHHHHHHHHHHHc
Q 035659 307 KMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-------------R------------DVFVWSTMIAGFAMY 361 (655)
Q Consensus 307 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~------------~~~~~~~li~~~~~~ 361 (655)
+.+.. ++.+...|-.++...-+.|+++.|.++|+.+.. | ....|...+....+.
T Consensus 369 rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 369 LGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 99875 356777888899999999999999999998753 2 123688888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHH
Q 035659 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH-SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVE 440 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 440 (655)
|..+.|..+|.+..+.-..+....|...+..-.+ .++.+.|..+|+...+.+ .-+...+...++.....|+.+.|..
T Consensus 448 ~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999875111123334333222223 355899999999998753 2345567788888889999999999
Q ss_pred HHHhC-CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 441 FIEKM-PIVP----GASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 441 ~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|++.
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 99986 3233 346899999999999999999999999999999764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-11 Score=119.88 Aligned_cols=264 Identities=12% Similarity=0.060 Sum_probs=173.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHC----CCCCC-CH
Q 035659 212 ISGFVQGGFFEKAIELYREMEMENVKPD----EVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS----KNVNP-DE 282 (655)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~----~~~~p-~~ 282 (655)
...+...|++++|+..|+++.+.... + ...+..+...+...|+++ +|++.+++.... + ..| ..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~al~~~~~~~-~~~~~~ 83 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYA------KALEYHHHDLTLARTIG-DQLGEA 83 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHT-CHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHhhccc-ccHHHH
Confidence 34444455555555555554443211 1 133444444455555533 455444443221 1 112 24
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcC----CC-CchhhHHHHHHHHHhcCC--------------------HHHHH
Q 035659 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQG----IK-LNCYLTTSLIDMYTKCGN--------------------LDKAL 337 (655)
Q Consensus 283 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g----~~-~~~~~~~~li~~~~~~g~--------------------~~~A~ 337 (655)
.++..+...+...|++++|...+.+..+.. -. ....++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 467777778888899999988888876531 11 113477788888888888 88888
Q ss_pred HHHhhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCcHHHHH
Q 035659 338 EVFHTVKS-----R----DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV-KPN----AVTFTNVLCACSHSGLVDEGR 403 (655)
Q Consensus 338 ~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~ 403 (655)
+.+++... . ....+..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88876532 1 234678888889999999999999988765311 011 236777788889999999999
Q ss_pred HHHHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHHH
Q 035659 404 MFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG----ASVWGALLGACKIHENVELAE 471 (655)
Q Consensus 404 ~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~ 471 (655)
.+++...+...-.++ ...+..+...|...|++++|...+++. +...+ ..++..+...+...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999987653221122 456788889999999999999998875 11112 457788889999999999999
Q ss_pred HHHHHHhccCCC
Q 035659 472 YACSHLLELEPE 483 (655)
Q Consensus 472 ~~~~~~~~~~p~ 483 (655)
..+++++++.+.
T Consensus 324 ~~~~~a~~~~~~ 335 (338)
T 3ro2_A 324 HFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-10 Score=120.11 Aligned_cols=225 Identities=9% Similarity=0.022 Sum_probs=172.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----C-----ChhHHH
Q 035659 288 VLSACAQLGAMDIGVQIHAKMKKQ----GIKL-NCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----R-----DVFVWS 352 (655)
Q Consensus 288 ll~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~ 352 (655)
....+...|++++|...+.++.+. +-++ ...++..+...|...|++++|...+++..+ . ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455678899999999999999874 2122 356888999999999999999998887642 1 135788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCcHHHHHHHHHHcchhc---Cc-cCCcchHH
Q 035659 353 TMIAGFAMYGCGREALDLFSRMQEAKVK-PN----AVTFTNVLCACSHSGLVDEGRMFFNQMEPVY---GV-VPGVKHYT 423 (655)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~y~ 423 (655)
.+...|...|++++|+..|++..+.... ++ ..++..+...+...|++++|...|++..+.. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988753111 12 2467788889999999999999999887621 12 22256788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CC-----CCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHH
Q 035659 424 CMVDMLGRAGLLDEAVEFIEKM-PI-----VPG-ASVWGALLGACKIHEN---VELAEYACSHLLELEPENHGALVLLSN 493 (655)
Q Consensus 424 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 493 (655)
.+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ .++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999875 11 122 2335667778888888 77777777776 223445567889999
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 035659 494 IYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 494 ~~~~~g~~~~a~~~~~~m~~ 513 (655)
+|...|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.9e-10 Score=111.48 Aligned_cols=219 Identities=11% Similarity=0.058 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHh-------ccCCH-------HHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 035659 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACA-------QLGAM-------DIGVQIHAKMKKQGIKLNCYLTTSLIDMYT 328 (655)
Q Consensus 263 ~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 328 (655)
++|+..|++..... +-+...|..+...+. +.|++ ++|..++++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 38888999988753 455667777777665 35775 899999999998422456678999999999
Q ss_pred hcCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCcHHHHH
Q 035659 329 KCGNLDKALEVFHTVKS--R-DVF-VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC-SHSGLVDEGR 403 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~ 403 (655)
+.|++++|.++|++..+ | +.. .|..++..+.+.|+.++|..+|++..+.. +++...|....... ...|+.++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998765 2 343 79999999999999999999999998853 23444454433332 2369999999
Q ss_pred HHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-P---IVP--GASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
.+|+...+.. .-+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988642 224678888899999999999999999886 2 344 3568999999999999999999999999
Q ss_pred hccCCCCcc
Q 035659 478 LELEPENHG 486 (655)
Q Consensus 478 ~~~~p~~~~ 486 (655)
++..|++..
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 999987653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=8e-12 Score=124.20 Aligned_cols=233 Identities=15% Similarity=0.170 Sum_probs=169.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-------CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--------
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-------GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-------- 345 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------- 345 (655)
+..++..+...+...|++++|..++.++.+. ..+....++..+...|...|++++|...|++...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888888999999999999999999874 3345567888999999999999999999987642
Q ss_pred ---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcC-
Q 035659 346 ---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEA------KVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG- 414 (655)
Q Consensus 346 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 414 (655)
....+|..+...|...|++++|...|+++.+. +..| ....+..+...+...|++++|..+++.+.+...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 13467888899999999999999999998764 2223 345677788889999999999999998875311
Q ss_pred ----ccC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-hhHH------HHHHHHHHhcCCHHHHHH
Q 035659 415 ----VVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKMP----------IVPG-ASVW------GALLGACKIHENVELAEY 472 (655)
Q Consensus 415 ----~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~----------~~p~-~~~~------~~ll~~~~~~g~~~~a~~ 472 (655)
..| ....+..+...|.+.|++++|.+.++++- ..+. ...| ..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 122 24578888999999999999999998761 1111 1222 222333445556666677
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 473 ACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 473 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.++++....|....++..++.+|.+.|++++|.+.+++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77887777888888999999999999999999999988765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.5e-11 Score=129.60 Aligned_cols=162 Identities=19% Similarity=0.220 Sum_probs=133.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHH
Q 035659 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTC 424 (655)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~ 424 (655)
+..+|+.+...|.+.|++++|++.|++..+. .| +...+..+..++.+.|++++|++.|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3456777777888888888888888887774 44 3667778888888888888888888888753 554 667888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 502 (655)
+..+|.+.|++++|++.|++. .+.|+ ...|..+...+...|++++|+..++++++++|++..++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888999999998888875 44454 6789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 035659 503 NVSELRKHMRV 513 (655)
Q Consensus 503 ~a~~~~~~m~~ 513 (655)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-10 Score=104.74 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=129.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035659 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA 392 (655)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 392 (655)
+..+|..+...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456777777777778888888877777643 356677888888888888888888888887753 2245566666677
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELA 470 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 470 (655)
+...++++.+...+....+. ...+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88888999999888888753 2234667888888999999999999998886 3334 567899999999999999999
Q ss_pred HHHHHHHhccCCCC
Q 035659 471 EYACSHLLELEPEN 484 (655)
Q Consensus 471 ~~~~~~~~~~~p~~ 484 (655)
+..++++++++|++
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999999865
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=6.2e-10 Score=110.70 Aligned_cols=211 Identities=9% Similarity=0.012 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHH-------hcCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHH
Q 035659 299 DIGVQIHAKMKKQGIKLNCYLTTSLIDMYT-------KCGNL-------DKALEVFHTVKS---R-DVFVWSTMIAGFAM 360 (655)
Q Consensus 299 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 360 (655)
++|..+|+++++.. +.++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999988864 567788888888876 35885 899999998754 2 56689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHH-hcCCHH
Q 035659 361 YGCGREALDLFSRMQEAKVKPNA-V-TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLG-RAGLLD 436 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~-~~g~~~ 436 (655)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|+...+. .| +...|........ ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 45653 3 7888888899999999999999999853 33 3444544433322 369999
Q ss_pred HHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CCC-CcchHHHHHHHHHhcCCchhHHHHHHH
Q 035659 437 EAVEFIEKM-PIV-PGASVWGALLGACKIHENVELAEYACSHLLEL---EPE-NHGALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 437 ~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
+|.++|++. ... .+...|..++..+...|++++|..+|+++++. .|. ....|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999986 222 35789999999999999999999999999996 443 566888899999999999999999999
Q ss_pred HHhCC
Q 035659 511 MRVSG 515 (655)
Q Consensus 511 m~~~g 515 (655)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88753
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.9e-10 Score=116.01 Aligned_cols=230 Identities=7% Similarity=0.001 Sum_probs=179.1
Q ss_pred HHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--C----CC
Q 035659 246 VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD----EFTFVSVLSACAQLGAMDIGVQIHAKMKKQG--I----KL 315 (655)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~----~~ 315 (655)
....+...|+++ +|+..|++....-.-.+| ..++..+...+...|+++.|...+.+..+.- . +.
T Consensus 109 ~g~~~~~~g~~~------~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 109 RGMYELDQREYL------SAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHTTCHH------HHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHhcCHH------HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 455667788866 999999998764111233 4578888889999999999999999988731 1 11
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CC
Q 035659 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----RD----VFVWSTMIAGFAMYGCGREALDLFSRMQEA----KV-KP 381 (655)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p 381 (655)
...+++.+...|...|++++|.+.|++..+ .+ ..++..+...|...|++++|+..|++..+. +. ..
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 245788899999999999999999988653 11 247888999999999999999999998762 33 33
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-hhHH
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDMLGRAGL---LDEAVEFIEKMPIVPG-ASVW 454 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~ 454 (655)
...++..+...+...|++++|...+++..+...-..+ ...+..+...|...|+ +++|+.++++.+..|+ ...+
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 342 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4567888888999999999999999988754221122 2335678888889999 9999999999865444 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccC
Q 035659 455 GALLGACKIHENVELAEYACSHLLELE 481 (655)
Q Consensus 455 ~~ll~~~~~~g~~~~a~~~~~~~~~~~ 481 (655)
..+...|...|++++|...+++++++.
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 788899999999999999999998764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-08 Score=111.40 Aligned_cols=411 Identities=9% Similarity=0.031 Sum_probs=276.1
Q ss_pred CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCC---chHHHHHHHHHHHhCC-CCChhH
Q 035659 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ---FRVGQAIHGMVIKSSF-EDDLFI 176 (655)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~~~~~ 176 (655)
.|..+|..+|..+.+.+..+.+..+|+++... .+.....|..-+..-.+.++ .+.+..+|+..+.... +|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 48889999999999999999999999999433 33455566677777777888 9999999999988741 488889
Q ss_pred HHHHHHHHHhcCCH--------HHHHHHHhhcC------CC-CeeHHHHHHHHHH---------hCCChhHHHHHHHHHH
Q 035659 177 SNSLIHFYAICGDL--------AMAYCVFVMIG------KK-DVVSWNSMISGFV---------QGGFFEKAIELYREME 232 (655)
Q Consensus 177 ~~~li~~~~~~g~~--------~~A~~~f~~~~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~ 232 (655)
|...+....+.++. +...++|+... .+ +...|...+.... ..++++.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888877666554 33457777532 22 3467888887544 2345778889999988
Q ss_pred HCCCCCCHhhHHHHHHHHhccCcccc-------CCChHHHHHHHHHHHHC-CCCC---------------C-----C---
Q 035659 233 MENVKPDEVTMVAVLSACAKKRDLEF-------GRWPNEALSIFHELQLS-KNVN---------------P-----D--- 281 (655)
Q Consensus 233 ~~g~~p~~~t~~~ll~~~~~~~~~~~-------~~~~~~A~~l~~~m~~~-~~~~---------------p-----~--- 281 (655)
......-..+|......-...+.... ...++.|...+.++... .++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 53211112333222111111111000 00022344444443211 0011 1 1
Q ss_pred HHHHHHHHHHHhccC-------CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH-HHHhhcCC---CChhH
Q 035659 282 EFTFVSVLSACAQLG-------AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKAL-EVFHTVKS---RDVFV 350 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~---~~~~~ 350 (655)
...|...+.---..+ ..+....+|++++.. ++-+..+|-..+..+.+.|+.++|. ++|++... .+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 122333333222211 123456778888876 3567888888888888899999996 99988653 35667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHccCcHHHHHHHHHHc
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQEAK---------VKPN------------AVTFTNVLCACSHSGLVDEGRMFFNQM 409 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~ 409 (655)
|-..+...-+.|+.++|.++|+++.... -.|+ ...|...+....+.|.++.|..+|..+
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888889999999999999999998641 0132 235777777778889999999999999
Q ss_pred chhcCccCCcchHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---
Q 035659 410 EPVYGVVPGVKHYTCMVDMLGRAG-LLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE--- 483 (655)
Q Consensus 410 ~~~~~~~p~~~~y~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--- 483 (655)
.+. .-......|...+.+-.+.| +.+.|.++|+.. ....+...|...+......|+.+.|..+|+++++..|+
T Consensus 461 ~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 763 11223345554444444554 489999999886 22346678888888888899999999999999998873
Q ss_pred CcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 484 NHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 484 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
....|...+..-.+.|..+.+.++.+++.+.-
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34567777777788999999999999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.8e-11 Score=117.39 Aligned_cols=248 Identities=9% Similarity=0.053 Sum_probs=142.4
Q ss_pred eeHHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHC--
Q 035659 205 VVSWNSMISGFVQGGFFEKAIELYREMEME-------NVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS-- 275 (655)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~-- 275 (655)
..+|..+...+...|++++|+.+|+++.+. ........+..+...+...|+++ +|+..|++....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~------~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK------DAANLLNDALAIRE 100 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHH
Confidence 346777888888888888888888887663 22334567888888999999976 999998887653
Q ss_pred ----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 276 ----KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ------GI-KLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344 (655)
Q Consensus 276 ----~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 344 (655)
+..+....++..+...+...|++++|...+.++.+. +. +....++..+...|.+.|++++|.+.|++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 211223556777888888888888888888887764 21 2234455666666666666666666665442
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhc------CccC
Q 035659 345 SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY------GVVP 417 (655)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p 417 (655)
+. +++... +..| ...++..+...+...|++++|..+++.+.+.. ...+
T Consensus 181 ~~------------------------~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 181 EI------------------------YQTKLG-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HH------------------------HHHTSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HH------------------------HHHHhC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 11 000000 0011 12233444444445555555555554444210 0111
Q ss_pred Ccc-------hHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 418 GVK-------HYTCMVDMLGRAGLLDEAVEFIEKMP-IVP-GASVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 418 ~~~-------~y~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
... .+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111 12222233344455555566666552 223 3567888999999999999999999999987764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.6e-10 Score=101.76 Aligned_cols=157 Identities=17% Similarity=0.051 Sum_probs=89.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcC
Q 035659 354 MIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG 433 (655)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g 433 (655)
+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. ...+...+..+...|...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 3334444444444444444443321 113334444444445555555555555554432 1122344555555555566
Q ss_pred CHHHHHHHHHhC-C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHH
Q 035659 434 LLDEAVEFIEKM-P-IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHM 511 (655)
Q Consensus 434 ~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 511 (655)
++++|.+.++++ . ...+...|..+...+...|++++|...++++++..|.+...+..++.+|...|++++|.+.++..
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666655554 1 12345666667777777777777777777777777777777777777777777777777777776
Q ss_pred Hh
Q 035659 512 RV 513 (655)
Q Consensus 512 ~~ 513 (655)
.+
T Consensus 171 ~~ 172 (186)
T 3as5_A 171 NE 172 (186)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-09 Score=110.46 Aligned_cols=226 Identities=9% Similarity=0.041 Sum_probs=117.5
Q ss_pred HHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--C---C-Cc
Q 035659 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD----EFTFVSVLSACAQLGAMDIGVQIHAKMKKQG--I---K-LN 316 (655)
Q Consensus 247 l~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~---~-~~ 316 (655)
...+...|+++ +|+..|++......-.+| ..++..+..++...|+++.|...+.+..+.. . . ..
T Consensus 108 g~~~~~~g~~~------~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 108 GMYEFDQKEYV------EAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHTTCHH------HHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHCCHH------HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 33455667755 888888777643211122 3456666777777778777777777766521 0 1 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCH
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKS-----RD----VFVWSTMIAGFAMYGCGREALDLFSRMQEA----KVKPNA 383 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~ 383 (655)
..+++.+...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+. +.+...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 34566666677777777777766665432 11 234555566666666666666666665541 111124
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCh-hHHHH
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDMLGRAGL---LDEAVEFIEKMPIVPGA-SVWGA 456 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~ 456 (655)
.++..+...+.+.|++++|..+++...+...-..+ ...+..+...|...|+ +++|+..+++.+..|+. ..+..
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 341 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 44555555566666666666666655443111111 1223333344444444 55555555554322221 23334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 035659 457 LLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
+...|...|++++|...+++++
T Consensus 342 la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4444445555555555544444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.6e-10 Score=108.86 Aligned_cols=147 Identities=11% Similarity=0.022 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCchhhHHHHHHHHHhcCCHHHH
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ------GI-KLNCYLTTSLIDMYTKCGNLDKA 336 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A 336 (655)
+|++++.+..... .+....++..+...+...|++++|...+.++.+. +- +....++..+...|...|++++|
T Consensus 26 ~al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 26 QALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp HHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 5555666554332 2234567788888889999999999999888764 22 23456778888888888888888
Q ss_pred HHHHhhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCc
Q 035659 337 LEVFHTVKSR-----------DVFVWSTMIAGFAMYGCGREALDLFSRMQEA------KVKP-NAVTFTNVLCACSHSGL 398 (655)
Q Consensus 337 ~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~ 398 (655)
.+.|++..+. ...+|..+...|...|++++|+..|+++.+. +-.| ...++..+...+...|+
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 184 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 8887765321 2345555666666666666666666666543 1122 13345555555666666
Q ss_pred HHHHHHHHHHcch
Q 035659 399 VDEGRMFFNQMEP 411 (655)
Q Consensus 399 ~~~a~~~~~~~~~ 411 (655)
+++|..+++.+.+
T Consensus 185 ~~~A~~~~~~~l~ 197 (283)
T 3edt_B 185 YQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-09 Score=96.95 Aligned_cols=168 Identities=14% Similarity=0.012 Sum_probs=140.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCAC 393 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 393 (655)
...+..+...|...|++++|.+.|+++.+. +...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 446677788888999999999999988753 56788888999999999999999999998753 33677788888889
Q ss_pred HccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHH
Q 035659 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAE 471 (655)
Q Consensus 394 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~ 471 (655)
...|++++|.++++.+.+. ...+...+..+...|...|++++|.+.+++. .. ..+..+|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998764 2345678888999999999999999999886 22 235788999999999999999999
Q ss_pred HHHHHHhccCCCCcch
Q 035659 472 YACSHLLELEPENHGA 487 (655)
Q Consensus 472 ~~~~~~~~~~p~~~~~ 487 (655)
..++++++..|++...
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998876543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-09 Score=102.71 Aligned_cols=205 Identities=9% Similarity=0.050 Sum_probs=155.3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHH
Q 035659 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMI 355 (655)
Q Consensus 279 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 355 (655)
+.|...+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|.+.|++..+ .+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3456788888888999999999999999999976436777777799999999999999999998753 3567888899
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC---cchHHH
Q 035659 356 AGFAMYGCGREALDLFSRMQEAKVKPN-A-------VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG---VKHYTC 424 (655)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~ 424 (655)
..|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+.+.+ +.|+ ...|..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 9999999999999999999884 343 3 3466777778889999999999999874 3554 567777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
+...|...|+. +++++ .+ ..+...+.... ....+.+++|...++++++++|++..+...+..+.
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 77777666543 22222 11 12333343333 34456789999999999999999987776665543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-08 Score=103.74 Aligned_cols=262 Identities=10% Similarity=-0.003 Sum_probs=165.6
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC----HHHH
Q 035659 214 GFVQGGFFEKAIELYREMEMENVKPDEV----TMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD----EFTF 285 (655)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~----~~t~ 285 (655)
.+...|++++|...+++........+.. ++..+...+...|+++ +|...+++......-..+ ..++
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT------RSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444555555555555544432111111 2333344444555543 555555544321100111 2335
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc----CCC--C-chhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C------ChhH
Q 035659 286 VSVLSACAQLGAMDIGVQIHAKMKKQ----GIK--L-NCYLTTSLIDMYTKCGNLDKALEVFHTVKS--R------DVFV 350 (655)
Q Consensus 286 ~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~ 350 (655)
..+...+...|++++|...+++..+. +.. | ....+..+...|...|++++|...+++... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66677788899999999999888763 221 2 345667788889999999999999887532 1 1346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHH-----HHHHHHHccCcHHHHHHHHHHcchhcCccCC---cch
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA-VTFT-----NVLCACSHSGLVDEGRMFFNQMEPVYGVVPG---VKH 421 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 421 (655)
|..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++..... ...+. ...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~ 255 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHH
Confidence 777888899999999999999988754222211 1121 2233467899999999999988753 21111 124
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-------PIVPGA-SVWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
+..+...+...|++++|.+.+++. +..++. ..+..+..++...|+.++|...++++++..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 567788899999999999988775 111122 2566667788899999999999999987653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-08 Score=102.13 Aligned_cols=261 Identities=13% Similarity=0.059 Sum_probs=188.5
Q ss_pred HHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CC--c
Q 035659 246 VLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF----TFVSVLSACAQLGAMDIGVQIHAKMKKQGI---KL--N 316 (655)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~---~~--~ 316 (655)
....+...|+++ +|...+++..... -..+.. .+..+...+...|+++.|.+.+.+..+... .+ .
T Consensus 20 ~a~~~~~~g~~~------~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 20 RAQVAINDGNPD------EAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHTTCHH------HHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHH------HHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 334555678865 9999999987753 122222 456666778889999999999998876321 11 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C--
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKS-------R----DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK--P-- 381 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p-- 381 (655)
..++..+...|...|++++|.+.+++... + ....+..+...+...|++++|...+++....... +
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 23467788889999999999999887642 1 1245667788899999999999999998764222 1
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT-----CMVDMLGRAGLLDEAVEFIEKM-PIVPG----- 450 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~----- 450 (655)
...++..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|.
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 234677777888999999999999998865421111111222 2334577999999999999987 22221
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-----C-cchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLELEPE-----N-HGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
...+..+...+...|++++|...++++++..+. + ...+..++.++...|+.++|...++....
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 235677788899999999999999999876432 1 13677789999999999999999988765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-09 Score=114.18 Aligned_cols=212 Identities=11% Similarity=-0.028 Sum_probs=153.5
Q ss_pred cHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCc-hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 035659 119 PIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQF-RVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVF 197 (655)
Q Consensus 119 ~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 197 (655)
+++++..+... ... ...+...+..+..++...|++ ++|.+.++.+++.. +.+...+..+...|.+.|++++|...|
T Consensus 84 ~~~al~~l~~~-~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEV-LGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHH-HTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHH-hcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55677777766 322 223566777777888889999 99999999998885 556788999999999999999999999
Q ss_pred hhcCC--CCeeHHHHHHHHHHhC---------CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc--------Ccccc
Q 035659 198 VMIGK--KDVVSWNSMISGFVQG---------GFFEKAIELYREMEMENVKPDEVTMVAVLSACAKK--------RDLEF 258 (655)
Q Consensus 198 ~~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------~~~~~ 258 (655)
++..+ |+..+|..+...|.+. |++++|++.|++..+.. +-+...|..+..++... |+++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~- 238 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ- 238 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH-
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH-
Confidence 88754 6667888899999999 99999999999998764 23467788888777776 6654
Q ss_pred CCChHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 035659 259 GRWPNEALSIFHELQLSKNVN---PDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDK 335 (655)
Q Consensus 259 ~~~~~~A~~l~~~m~~~~~~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (655)
+|++.|++..... + -+...+..+..++...|++++|.+.++++.+.. +.+...+..+..++...|++++
T Consensus 239 -----~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 239 -----QALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp -----HHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 7888877777632 2 256666666677777777777777777766653 3344455555555665565555
Q ss_pred HHHHHhhc
Q 035659 336 ALEVFHTV 343 (655)
Q Consensus 336 A~~~~~~~ 343 (655)
|.+.+..+
T Consensus 311 Ai~~~~~~ 318 (474)
T 4abn_A 311 LLESKGKT 318 (474)
T ss_dssp HHHHTTTC
T ss_pred HHHHhccc
Confidence 55544433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-09 Score=101.38 Aligned_cols=187 Identities=12% Similarity=-0.030 Sum_probs=111.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 035659 316 NCYLTTSLIDMYTKCGNLDKALEVFHTVKS----RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVL 390 (655)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 390 (655)
|+..+..+...|.+.|++++|...|+...+ ++...|..+...+...|++++|+..|++..+. .| +...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 455666666777777777777777766532 45555555666677777777777777776663 33 344556666
Q ss_pred HHHHccCcHHHHHHHHHHcchhcCccCC-c-------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---hhHHHHHH
Q 035659 391 CACSHSGLVDEGRMFFNQMEPVYGVVPG-V-------KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG---ASVWGALL 458 (655)
Q Consensus 391 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll 458 (655)
..+...|++++|...++...+. .|+ . ..|..+...+...|++++|++.|++. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 6667777777777777766643 232 2 34555666666666667766666664 44454 34555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
..+. ..+...++++..+.+.+...|..+ .....+.+++|...+++..+.
T Consensus 161 ~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFY-----NNGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 5553 334444555555555444333322 233445568899888887764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.8e-09 Score=106.47 Aligned_cols=225 Identities=10% Similarity=0.005 Sum_probs=168.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcC--CC---CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----C-----ChhHHH
Q 035659 288 VLSACAQLGAMDIGVQIHAKMKKQG--IK---LNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----R-----DVFVWS 352 (655)
Q Consensus 288 ll~~~~~~g~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~ 352 (655)
....+...|++++|...+.++.+.- .. ....++..+...|...|+++.|...+++..+ . ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3445678999999999999998642 11 1356788899999999999999888877542 1 145788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhc---CccCCcchHHH
Q 035659 353 TMIAGFAMYGCGREALDLFSRMQEA----KVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVY---GVVPGVKHYTC 424 (655)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~y~~ 424 (655)
.+...|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...|++..+.. +......++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999988753 1111 13467778888999999999999999987621 11222567888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CC--CCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHH
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM----PI--VPG-ASVWGALLGACKIHEN---VELAEYACSHLLELEPENHGALVLLSNI 494 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 494 (655)
+...|.+.|++++|...+++. +. .|. ...+..+...+...++ +++|...+++. ...|.....+..++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 899999999999999999885 21 122 3445566666777788 77777777762 2224445677889999
Q ss_pred HHhcCCchhHHHHHHHHHh
Q 035659 495 YAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 495 ~~~~g~~~~a~~~~~~m~~ 513 (655)
|...|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999987754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.1e-09 Score=103.15 Aligned_cols=226 Identities=10% Similarity=0.021 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcc--C-CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQL--G-AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~--g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (655)
+|.+++.+..+. .++....| .++ +. + ++++|...+.++ ...|...|++++|...|
T Consensus 3 ~a~~~~~~a~k~--~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 3 DPVELLKRAEKK--GVPSSGFM-KLF----SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CHHHHHHHHHHH--SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred cHHHHHHHHHHH--hCcCCCcc-hhc----CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 566677776654 23322222 222 22 2 477777777665 34567788888888887
Q ss_pred hhcCCC-----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcc-CcHHHHHHH
Q 035659 341 HTVKSR-----D----VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK-PN----AVTFTNVLCACSHS-GLVDEGRMF 405 (655)
Q Consensus 341 ~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~-g~~~~a~~~ 405 (655)
++..+- + ..+|+.+...|...|++++|+..|++..+.... .+ ..++..+...+... |++++|+..
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 765421 1 457888888999999999999998887653111 01 35677888888886 999999999
Q ss_pred HHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---h-----hHHHHHHHHHHhcCCHHHHHH
Q 035659 406 FNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG---A-----SVWGALLGACKIHENVELAEY 472 (655)
Q Consensus 406 ~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~ 472 (655)
|++..+.+.-..+ ..++..+...|.+.|++++|+..|++. ...|+ . ..|..+..++...|++++|+.
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998764211111 346888899999999999999999886 22222 1 156778888999999999999
Q ss_pred HHHHHhccCCCCcch-----HHHHHHHHH--hcCCchhHHHHHHHH
Q 035659 473 ACSHLLELEPENHGA-----LVLLSNIYA--KTGKWDNVSELRKHM 511 (655)
Q Consensus 473 ~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 511 (655)
.+++.++++|..... +..++..|. ..+++++|.+.++.+
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 999999999876543 344566664 456677777766443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-08 Score=100.23 Aligned_cols=210 Identities=10% Similarity=-0.038 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcCCHHHHH
Q 035659 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ----GIKL-NCYLTTSLIDMYTKCGNLDKAL 337 (655)
Q Consensus 263 ~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~ 337 (655)
++|...|.+. ...+...|++++|...+.+..+. |-++ ...+++.+..+|.+.|++++|.
T Consensus 34 ~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 34 EEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3777777665 34577889999999999988764 3222 2568999999999999999999
Q ss_pred HHHhhcCCC-----C----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHccCcHHHH
Q 035659 338 EVFHTVKSR-----D----VFVWSTMIAGFAMY-GCGREALDLFSRMQEAKVKP-N----AVTFTNVLCACSHSGLVDEG 402 (655)
Q Consensus 338 ~~~~~~~~~-----~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a 402 (655)
..|++..+- + ..+|+.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999876531 2 35788999999996 99999999999987631110 1 35678888899999999999
Q ss_pred HHHHHHcchhcCccCCcc-----hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChh------HHHHHHHHHH--hcCCHH
Q 035659 403 RMFFNQMEPVYGVVPGVK-----HYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGAS------VWGALLGACK--IHENVE 468 (655)
Q Consensus 403 ~~~~~~~~~~~~~~p~~~-----~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~ll~~~~--~~g~~~ 468 (655)
...|+...+...-.+... .|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999886421112211 4677888899999999999999996 4455422 3445556664 457799
Q ss_pred HHHHHHHHHhccCCCCcchH
Q 035659 469 LAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 469 ~a~~~~~~~~~~~p~~~~~~ 488 (655)
+|...++++.+++|.+...+
T Consensus 258 ~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHHH
Confidence 99999999988888654333
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.4e-09 Score=116.90 Aligned_cols=159 Identities=13% Similarity=0.153 Sum_probs=95.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCA 392 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 392 (655)
...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++..+. .| +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 44555555555555555555555555432 23455556666666666666666666666553 33 34556666666
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVEL 469 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 469 (655)
+...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|++. .+.|+ ...|..+...+...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 66666666666666666542 343 456666666677777777777766664 33443 4566777777777777777
Q ss_pred HHHHHHHHhcc
Q 035659 470 AEYACSHLLEL 480 (655)
Q Consensus 470 a~~~~~~~~~~ 480 (655)
|.+.+++++++
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.3e-08 Score=95.42 Aligned_cols=205 Identities=13% Similarity=0.023 Sum_probs=133.9
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHH
Q 035659 315 LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---D---VFVWSTMIAGFAMYGCGREALDLFSRMQEAKV-KPN-AVTF 386 (655)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~ 386 (655)
.+...+..+...+.+.|++++|...|+.+.+. + ...+..+...|.+.|++++|+..|++..+... .|+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34556666677777777888887777776542 2 45666677777777777777777777776421 112 3345
Q ss_pred HHHHHHHHc--------cCcHHHHHHHHHHcchhcCccCCc-chHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHH
Q 035659 387 TNVLCACSH--------SGLVDEGRMFFNQMEPVYGVVPGV-KHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGAL 457 (655)
Q Consensus 387 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~-~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 457 (655)
..+..++.. .|++++|...|+.+.+. .|+. .....+.......+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 555556666 77777777777777654 3332 2222211111000000 1124667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhc----------CCchhHHHHHHHHHhCCCccCCceeE
Q 035659 458 LGACKIHENVELAEYACSHLLELEPENH---GALVLLSNIYAKT----------GKWDNVSELRKHMRVSGLKKEPGCSS 524 (655)
Q Consensus 458 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~ 524 (655)
...+...|++++|+..++++++..|++. .++..++.+|... |++++|...++.+.+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--------- 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---------
Confidence 7889999999999999999999998754 5788899999877 89999999999987742
Q ss_pred EEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 035659 525 IEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLKS 560 (655)
Q Consensus 525 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~ 560 (655)
..+|...+....+.++..++.+
T Consensus 226 --------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 --------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHHHHHHHHHH
Confidence 1244455666666666666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3e-08 Score=96.44 Aligned_cols=96 Identities=7% Similarity=-0.006 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------C-CCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-------
Q 035659 281 DEFTFVSVLSACAQLGAMDIGVQIHAKMKKQ------G-IKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR------- 346 (655)
Q Consensus 281 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 346 (655)
...++..+...+...|++++|.+.+.++.+. . .+....++..+...|...|++++|...|++..+.
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3567888999999999999999999998875 1 1345678899999999999999999999886532
Q ss_pred ----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 347 ----DVFVWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 347 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
...++..+...|...|++++|..+|++..+
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245788899999999999999999999876
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-07 Score=90.03 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=119.9
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 035659 301 GVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----RDVFVWSTMIAGFAMYGCGREALDLFSRMQ 375 (655)
Q Consensus 301 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (655)
+...+++.++.+ +++..+...+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555444 34444555677777778888888888777632 244566777788888888888888888887
Q ss_pred HcCCCC-----CHHHHHHHHHHH--HccC--cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 035659 376 EAKVKP-----NAVTFTNVLCAC--SHSG--LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM- 445 (655)
Q Consensus 376 ~~g~~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m- 445 (655)
+ ..| +..+...++.++ ...| +..+|..+|+++.+. .|+......+..++.+.|++++|++.++.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7 356 355556666552 2233 788888888888654 344233344444788888888888888764
Q ss_pred CC----------CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 446 PI----------VP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 446 ~~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
.. .| |+.+...++......|+ +|.++++++.+..|+++..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 11 13 45666566666666676 8889999999999987643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.6e-08 Score=95.15 Aligned_cols=203 Identities=12% Similarity=0.042 Sum_probs=144.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C----Chh
Q 035659 279 NPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN---CYLTTSLIDMYTKCGNLDKALEVFHTVKS--R----DVF 349 (655)
Q Consensus 279 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~ 349 (655)
+.+...+-.....+.+.|++++|...++.+++.. +.+ ...+..+..+|.+.|++++|...|+...+ | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677788888999999999999999999864 223 67788899999999999999999998764 2 234
Q ss_pred HHHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcc
Q 035659 350 VWSTMIAGFAM--------YGCGREALDLFSRMQEAKVKPNAV-TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVK 420 (655)
Q Consensus 350 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 420 (655)
.+..+...+.. .|++++|+..|++.... .|+.. ....+ ..+..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 67778888888 99999999999999885 34432 21111 111111100 011
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIH----------ENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.+..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 2556778888999999999988876 22233 34677777777755 899999999999999999885
Q ss_pred c---hHHHHHHHHHhcCCchh
Q 035659 486 G---ALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 486 ~---~~~~l~~~~~~~g~~~~ 503 (655)
. ++..+..++...|++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 4 34445555554444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.6e-08 Score=83.57 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 429 (655)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---D------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C-------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---C-------------
Confidence 34455555555555555555555555432 123344444444444455555555555444332 1
Q ss_pred HhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 430 GRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
..+...|..+...+...|++++|...++++++..|.+...+..++.+|...|++++|.+.++
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 12344555556666666666666666666666666666666666666666666666666666
Q ss_pred HHHh
Q 035659 510 HMRV 513 (655)
Q Consensus 510 ~m~~ 513 (655)
.+.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-07 Score=87.71 Aligned_cols=180 Identities=11% Similarity=0.005 Sum_probs=119.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----HH
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKS--RD----VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV----TF 386 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 386 (655)
...+..+...+.+.|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|++..+.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 34555667778888888888888888753 22 2467777888888888888888888888743 3321 33
Q ss_pred HHHHHHHHc------------------cCcHHHHHHHHHHcchhcCccCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 035659 387 TNVLCACSH------------------SGLVDEGRMFFNQMEPVYGVVPGVK-HYTCMVDMLGRAGLLDEAVEFIEKMPI 447 (655)
Q Consensus 387 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~-~y~~li~~~~~~g~~~~A~~~~~~m~~ 447 (655)
..+..++.. .|+.++|...|+.+.+. .|+.. .+..... .+.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH--------
Confidence 333333432 35566666666666543 23321 1111110 00000000
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 448 VPGASVWGALLGACKIHENVELAEYACSHLLELEPENH---GALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 448 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01113456678899999999999999999999875 5688999999999999999999999888654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-07 Score=93.11 Aligned_cols=175 Identities=10% Similarity=-0.043 Sum_probs=138.2
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcch
Q 035659 333 LDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411 (655)
Q Consensus 333 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 411 (655)
.+...+.+......+...+..+...+.+.|++++|+..|++.... .| +...+..+...+...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344555555555555667777888888999999999999999885 34 566777888889999999999999999875
Q ss_pred hcCccCCcchHHHHH-HHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--cc
Q 035659 412 VYGVVPGVKHYTCMV-DMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPEN--HG 486 (655)
Q Consensus 412 ~~~~~p~~~~y~~li-~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 486 (655)
. .|+........ ..+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|.+ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 56544333222 3366778888888888775 3334 57889999999999999999999999999999988 78
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 487 ALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
++..++.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999998887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=8e-08 Score=81.42 Aligned_cols=123 Identities=20% Similarity=0.283 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035659 319 LTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSH 395 (655)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 395 (655)
.+..+...|...|++++|.++|+++.+ .+...|..+...+...|++++|..+|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 577889999999999999999998753 467788999999999999999999999998864 3356667777778888
Q ss_pred cCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 035659 396 SGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 444 (655)
.|++++|.++++.+.+. ...+...+..+...|.+.|++++|.+.+++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 88888888888877653 112234444455555555555555554444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-08 Score=110.20 Aligned_cols=168 Identities=13% Similarity=-0.018 Sum_probs=117.6
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 035659 328 TKCGNLDKALEVFHTVK-----------SRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396 (655)
Q Consensus 328 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 396 (655)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56677777777777665 2355667777777777788888888887777642 22456666677777777
Q ss_pred CcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 035659 397 GLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYA 473 (655)
Q Consensus 397 g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 473 (655)
|++++|...|+++.+. .| +...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888777643 44 35667777777888888877 7777765 3333 456777777888888888888888
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCC
Q 035659 474 CSHLLELEPENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 474 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 500 (655)
++++++++|.+..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888777777777777766554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.3e-09 Score=91.55 Aligned_cols=135 Identities=9% Similarity=-0.033 Sum_probs=79.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHH
Q 035659 361 YGCGREALDLFSRMQEAKVKPN-AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEA 438 (655)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A 438 (655)
.|+.++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+...+. .| +...|..+..+|.+.|++++|
T Consensus 10 ~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 10 KADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHHH
Confidence 34455555555554431 221 233344555556666666666666665532 33 345566666666666666666
Q ss_pred HHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHH-HHHHHhccCCCCcchHHHHHHHHHhcCC
Q 035659 439 VEFIEKM-PIVP-GASVWGALLGACKIHENVELAEY-ACSHLLELEPENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 439 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 500 (655)
+..|++. .+.| +..+|..+...+...|+.++|.+ .++++++++|+++.+|.....++...|+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 6666654 3334 35667777777777777765544 4577777788777777777777766664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-07 Score=89.77 Aligned_cols=174 Identities=10% Similarity=0.037 Sum_probs=134.5
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcch
Q 035659 336 ALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEP 411 (655)
Q Consensus 336 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 411 (655)
|...|++..+ ++..++..+..++...|+.++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5667776553 455566788889999999999999999987765322 456677788889999999999999999975
Q ss_pred hcCccC-----CcchHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-
Q 035659 412 VYGVVP-----GVKHYTCMVDM--LGRAG--LLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLEL- 480 (655)
Q Consensus 412 ~~~~~p-----~~~~y~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 480 (655)
. .| +..+...|..+ ....| +..+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 56 34555555555 33334 999999999998 33455334445555889999999999999988876
Q ss_pred ---------CCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 481 ---------EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 481 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+|+++.++..++......|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48899999888888888887 899999998884
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-07 Score=84.80 Aligned_cols=157 Identities=8% Similarity=0.015 Sum_probs=96.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH-HHh
Q 035659 353 TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM-LGR 431 (655)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~-~~~ 431 (655)
.+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+.+. .|+...+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 33444555555555555555554421 113344555555555666666666666655432 2222222111111 111
Q ss_pred cCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCCchhHHHH
Q 035659 432 AGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPEN--HGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 432 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
.+...+|...+++. ...| +...+..+...+...|++++|...++++++.+|.. ...+..++.+|...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 12223355555554 2334 47788889999999999999999999999999865 55889999999999999999998
Q ss_pred HHHHHh
Q 035659 508 RKHMRV 513 (655)
Q Consensus 508 ~~~m~~ 513 (655)
+++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.1e-08 Score=86.63 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=101.8
Q ss_pred HHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCH
Q 035659 391 CACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENV 467 (655)
Q Consensus 391 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 467 (655)
..+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 445667899999999998864 3443 566778999999999999999999986 4445 578999999999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH-HHHHHh
Q 035659 468 ELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL-RKHMRV 513 (655)
Q Consensus 468 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 513 (655)
++|+..++++++++|.++.++..++.+|.+.|++++|.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987765 466655
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.9e-07 Score=84.07 Aligned_cols=161 Identities=8% Similarity=-0.075 Sum_probs=108.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----cHHHHHHHHHHcchhcCccCCcchH
Q 035659 347 DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG----LVDEGRMFFNQMEPVYGVVPGVKHY 422 (655)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~y 422 (655)
+..++..+...|...++.++|+++|++..+.| +...+..+...+.. + +.++|..+|+...+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 45555556666666666666666666666654 44555555555555 5 677777777776542 244556
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---hhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 423 TCMVDMLGR----AGLLDEAVEFIEKM-PIVPG---ASVWGALLGACKI----HENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 423 ~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
..|..+|.. .+++++|.++|++. ...|+ +..+..|...|.. .++.++|...++++.+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 666666665 67777888777775 33332 6777777777777 77888888888888877 556677888
Q ss_pred HHHHHHhc-C-----CchhHHHHHHHHHhCCC
Q 035659 491 LSNIYAKT-G-----KWDNVSELRKHMRVSGL 516 (655)
Q Consensus 491 l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 516 (655)
|+.+|... | ++++|.+.++...+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888764 3 78888888888777664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.5e-07 Score=89.77 Aligned_cols=194 Identities=13% Similarity=0.054 Sum_probs=135.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----C----hhHHHHHHHHHHHcCChH
Q 035659 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR-----D----VFVWSTMIAGFAMYGCGR 365 (655)
Q Consensus 295 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~ 365 (655)
.++++.|...|.++ ...|...|++++|...|.+..+- + ..+|+.+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566666555543 45677778888888777765421 1 347888888899999999
Q ss_pred HHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHH
Q 035659 366 EALDLFSRMQEAKV---KPN--AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 366 ~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~ 436 (655)
+|+..|++..+.-. .|. ..++..+...+.. |++++|+..|++..+.+.-..+ ...+..+...|.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 99999988765311 121 3567777778888 9999999999988754211111 457888899999999999
Q ss_pred HHHHHHHhC-CC---CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch-----HHHHHHHHHhcCCchh
Q 035659 437 EAVEFIEKM-PI---VPG----ASVWGALLGACKIHENVELAEYACSHLLELEPENHGA-----LVLLSNIYAKTGKWDN 503 (655)
Q Consensus 437 ~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~ 503 (655)
+|++.|++. .+ .++ ...+..++..+...|++++|...+++++ +.|..... ...++..+ ..|+.+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 999999876 11 112 2356667777888899999999999999 88865432 33455555 5677665
Q ss_pred HHH
Q 035659 504 VSE 506 (655)
Q Consensus 504 a~~ 506 (655)
+.+
T Consensus 251 ~~~ 253 (307)
T 2ifu_A 251 LLR 253 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.6e-07 Score=101.07 Aligned_cols=188 Identities=11% Similarity=0.021 Sum_probs=149.4
Q ss_pred hccCCHHHHHHHHHHHH--------HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 035659 293 AQLGAMDIGVQIHAKMK--------KQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMY 361 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 361 (655)
...|++++|.+.++++. +.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999998 432 45677889999999999999999999998764 4678999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHH
Q 035659 362 GCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAV 439 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~ 439 (655)
|++++|++.|++..+. .| +...+..+..++...|++++ .+.|+++.+. .| +...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999985 34 56778888889999999999 9999998853 45 4678899999999999999999
Q ss_pred HHHHhC-CCCCC-hhHHHHHHHHHHhcCC-----HHHHHHHHHHHhccCCCCcch
Q 035659 440 EFIEKM-PIVPG-ASVWGALLGACKIHEN-----VELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 440 ~~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 487 (655)
+.|++. ...|+ ...|..+..++...++ .+...++.+.+.+..+.++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 999997 56676 5677777777766555 344444555555555444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-07 Score=101.14 Aligned_cols=159 Identities=11% Similarity=0.058 Sum_probs=124.1
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 035659 330 CGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 330 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 406 (655)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998764 357789999999999999999999999998853 235678888889999999999999999
Q ss_pred HHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc---CCHHHHHHHHHHHhcc
Q 035659 407 NQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIH---ENVELAEYACSHLLEL 480 (655)
Q Consensus 407 ~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 480 (655)
++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999864 34 4678899999999999999999999986 3334 567889999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 035659 481 EPENHGALVLLS 492 (655)
Q Consensus 481 ~p~~~~~~~~l~ 492 (655)
+|.+...|..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-05 Score=81.71 Aligned_cols=360 Identities=8% Similarity=-0.018 Sum_probs=176.6
Q ss_pred ChHHHHHHhhcCC--CCCcchHHHHHHHHHhCCC-cHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHH----ccCCchHH
Q 035659 87 SLEYAREMFDQIP--QPNLYTWNTLIRAYSSSAE-PIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAA----RLVQFRVG 158 (655)
Q Consensus 87 ~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~----~~~~~~~a 158 (655)
+++.|+.+|++.. .|++..|..-+.-..+.+. .+....+|+..+..-|..| +...|...+..+. ..++.+.+
T Consensus 29 ~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v 108 (493)
T 2uy1_A 29 DYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI 108 (493)
T ss_dssp CHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence 7888888888755 3777788877776655553 3456667777644445433 3344444444332 23456778
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 035659 159 QAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKP 238 (655)
Q Consensus 159 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 238 (655)
..+++.++......-...|......-.. .....+.++..+ .. +.+..|..+++++...--..
T Consensus 109 R~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~---------------~~--~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 109 RNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGD---------------TL--PIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHH---------------HH--HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHH---------------Hh--HHHHHHHHHHHHHHHHHhhc
Confidence 8888888764211111222222221111 112222222211 11 12333444444333210001
Q ss_pred CHhhHHHHHHHHhccC-ccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch
Q 035659 239 DEVTMVAVLSACAKKR-DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC 317 (655)
Q Consensus 239 ~~~t~~~ll~~~~~~~-~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 317 (655)
+...|...+.--...+ ..+.....+.+..+|+++... .+.+...|...+.-+.+.|+++.|..++++.++. +.+.
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 2234444333322211 010000012466788888764 3555677777777778889999999999999987 4444
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHhhcC--C----------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 035659 318 YLTTSLIDMYTKCGNLDKA-LEVFHTVK--S----------RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAV 384 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A-~~~~~~~~--~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 384 (655)
..+.. |+...+.++. ..+.+... . .....|...+....+.+..+.|..+|++. .. ...+..
T Consensus 247 ~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~ 320 (493)
T 2uy1_A 247 FLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPH 320 (493)
T ss_dssp HHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHH
T ss_pred HHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChH
Confidence 33332 2222111111 11111110 0 01134555555555556666677777666 21 112333
Q ss_pred HHHHHHHH-HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 035659 385 TFTNVLCA-CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKI 463 (655)
Q Consensus 385 t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 463 (655)
.|...... +...++.+.|..+|+...+.++- ++..+...++...+.|+.+.|..+|++.. .....|...+.--..
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 33221111 11122466677777666654322 12334455565566666666666666652 245556666655555
Q ss_pred cCCHHHHHHHHHHHh
Q 035659 464 HENVELAEYACSHLL 478 (655)
Q Consensus 464 ~g~~~~a~~~~~~~~ 478 (655)
+|+.+.+..++++..
T Consensus 397 ~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 397 VGSMELFRELVDQKM 411 (493)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666655555554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-05 Score=77.31 Aligned_cols=220 Identities=10% Similarity=0.051 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCchhhHHHHHHHH----Hhc---CC
Q 035659 263 NEALSIFHELQLSKNVNPD-EFTFVSVLSACAQLG--AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMY----TKC---GN 332 (655)
Q Consensus 263 ~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~~---g~ 332 (655)
++|++++.++... .|+ ...|+.--.++...+ +++++.+.++.++... +-+..+|+.-...+ .+. ++
T Consensus 50 ~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3677777777663 344 445666666666666 7888888888777764 34455555544444 444 67
Q ss_pred HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc------HHH
Q 035659 333 LDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGR--EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL------VDE 401 (655)
Q Consensus 333 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~~ 401 (655)
++++.++++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|..-.....+.+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 7777777777653 45667777766777777777 788888888775432 55566555555555554 666
Q ss_pred HHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 035659 402 GRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE-AVEFIEKM-PI----VPGASVWGALLGACKIHENVELAEYACS 475 (655)
Q Consensus 402 a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 475 (655)
+++.++.+... ..-|...|+.+-..+.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.++++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 66666666542 12345556666666666665333 34455543 11 1244566666666666666666666666
Q ss_pred HHhc-cCCCCcchHH
Q 035659 476 HLLE-LEPENHGALV 489 (655)
Q Consensus 476 ~~~~-~~p~~~~~~~ 489 (655)
.+.+ .+|.....|.
T Consensus 283 ~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 283 LLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHTTCGGGHHHHH
T ss_pred HHHhccChHHHHHHH
Confidence 6664 5665544444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.8e-07 Score=98.16 Aligned_cols=146 Identities=9% Similarity=-0.058 Sum_probs=104.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 035659 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLF 371 (655)
Q Consensus 295 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 371 (655)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888999998887754 44577888889999999999999999988754 35678888888999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhc---CCHHHHHHHHHhC
Q 035659 372 SRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRA---GLLDEAVEFIEKM 445 (655)
Q Consensus 372 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~---g~~~~A~~~~~~m 445 (655)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .| +...+..+...|... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9988753 235677888888899999999999999988754 34 466788888888888 9999999988876
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.9e-06 Score=81.33 Aligned_cols=214 Identities=13% Similarity=0.146 Sum_probs=170.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC--CHHHHHHHHhhcCC---CChhHHHHHHHHH----HHc---CC
Q 035659 296 GAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG--NLDKALEVFHTVKS---RDVFVWSTMIAGF----AMY---GC 363 (655)
Q Consensus 296 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~ 363 (655)
..-++|.++.+.++..+ +-+..+|+.-...+...| +++++++.++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34468999999999876 456778888888888888 99999999998864 4566777766665 555 78
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH--HHHHHHHHcchhcCccCCcchHHHHHHHHHhcCC------H
Q 035659 364 GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD--EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL------L 435 (655)
Q Consensus 364 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~------~ 435 (655)
+++++++++++.+.. +-|...|..-.-.+.+.|.++ +++++++.+.+. -.-|-..|+.-..++.+.|+ +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999999864 337778877777778888888 999999999864 23355667666666777776 8
Q ss_pred HHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCH-HHHHHHHHHHhccC---CCCcchHHHHHHHHHhcCCchhHHHHHH
Q 035659 436 DEAVEFIEKM-PIV-PGASVWGALLGACKIHENV-ELAEYACSHLLELE---PENHGALVLLSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 436 ~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 509 (655)
+++++.++++ ... -|...|+.+...+.+.|+. +....+.+++.+++ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999998876 223 3689999999999888874 44667888888876 8888999999999999999999999999
Q ss_pred HHHh
Q 035659 510 HMRV 513 (655)
Q Consensus 510 ~m~~ 513 (655)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-07 Score=80.89 Aligned_cols=102 Identities=10% Similarity=-0.013 Sum_probs=88.0
Q ss_pred CccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 414 GVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 414 ~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
.+.|+ ...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34453 556777888888999999999999886 3344 57889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 491 LSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
++.+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988743
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-06 Score=85.86 Aligned_cols=164 Identities=7% Similarity=-0.040 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cc
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNA-----VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VK 420 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 420 (655)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677788888888888777664322111 12333445567778899998888877643111112 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------Cc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG-----ASVWGALLGACKIHENVELAEYACSHLLELEPE------NH 485 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 485 (655)
.|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999998888775 11222 258888999999999999999999999886422 14
Q ss_pred chHHHHHHHHHhcCCchhH-HHHHHHHHh
Q 035659 486 GALVLLSNIYAKTGKWDNV-SELRKHMRV 513 (655)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 513 (655)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 776776543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-06 Score=84.54 Aligned_cols=165 Identities=9% Similarity=-0.012 Sum_probs=115.6
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhH-HHHH
Q 035659 278 VNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS--RDVFV-WSTM 354 (655)
Q Consensus 278 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l 354 (655)
.+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|...|+++.. |+... +...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34445667777778888899999999999888865 45677888888889999999999999988865 33222 2222
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCC
Q 035659 355 IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL 434 (655)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~ 434 (655)
...+.+.++.++|+..|++..... +.+...+..+...+...|++++|...|..+.+...-..+...+..++..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 233566777777888888877742 2345667777777888888888888888877541111124567777777777777
Q ss_pred HHHHHHHHHh
Q 035659 435 LDEAVEFIEK 444 (655)
Q Consensus 435 ~~~A~~~~~~ 444 (655)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7777666654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=9.7e-07 Score=81.87 Aligned_cols=125 Identities=14% Similarity=-0.013 Sum_probs=101.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHh
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKI 463 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 463 (655)
+..+...+...|++++|...|+... .|+...|..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3445556677788888888887763 456677888888888888888888888775 2223 56788888999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCc----------------chHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 464 HENVELAEYACSHLLELEPENH----------------GALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 464 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.|++++|...++++++..|.+. ..+..++.+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888777 889999999999999999999999988753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-06 Score=82.63 Aligned_cols=184 Identities=13% Similarity=0.034 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-C-chhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-h---hHHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIK-L-NCYLTTSLIDMYTKCGNLDKALEVFHTVKS--RD-V---FVWST 353 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 353 (655)
...+..+...+.+.|++++|...|+.+++.... + ....+..+..+|.+.|++++|...|+++.+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445566677889999999999999999986421 1 245788889999999999999999999764 32 2 24555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHcchhcC
Q 035659 354 MIAGFAM------------------YGCGREALDLFSRMQEAKVKPNAVT-FTNVLCACSHSGLVDEGRMFFNQMEPVYG 414 (655)
Q Consensus 354 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 414 (655)
+...+.. .|+.++|+..|+++.+. .|+... ..... +.+. +...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l~~------~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RLVF------LKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HHHH------HHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HHHH------HHHHHH----
Confidence 5555554 57899999999999984 455432 21111 1000 111110
Q ss_pred ccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 035659 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGA----SVWGALLGACKIHENVELAEYACSHLLELEPENHG 486 (655)
Q Consensus 415 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 486 (655)
.....+...|.+.|++++|+..|+++ ...|+. ..+..+..++.+.|+.++|...++.+....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235677889999999999999886 333442 56888899999999999999999999988887653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.4e-07 Score=83.01 Aligned_cols=176 Identities=7% Similarity=-0.032 Sum_probs=112.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChH
Q 035659 287 SVLSACAQLGAMDIGVQIHAKMKKQGIKLN-CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365 (655)
Q Consensus 287 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 365 (655)
.....+...|++++|...+.++++.. |+ ...+... ..... .......++.+...|.+.|+++
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~~~ 71 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRNYD 71 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCCHH
Confidence 34445566777777777777776643 22 2222110 00000 0001122334777888888999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCC--HHHHHHHH
Q 035659 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGL--LDEAVEFI 442 (655)
Q Consensus 366 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~--~~~A~~~~ 442 (655)
+|+..|++..+.. +-+...+..+..++...|++++|...|+.+.+. .|+ ...|..+...|...|. .+.+...+
T Consensus 72 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 72 KAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999998888753 225677778888888899999999999888753 454 6677778777766554 34455666
Q ss_pred HhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 443 EKMPIVPGA--SVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 443 ~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
+... .|+. ..|..+..++...|++++|+..+++++++.|++
T Consensus 148 ~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 148 KKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp C----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 5552 3443 345556666777899999999999999999953
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-07 Score=80.83 Aligned_cols=96 Identities=7% Similarity=-0.031 Sum_probs=83.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 456677788888999999999999876 3334 67888899999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 035659 497 KTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 497 ~~g~~~~a~~~~~~m~~~ 514 (655)
..|++++|.+.++...+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999888764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=4.2e-06 Score=82.07 Aligned_cols=160 Identities=8% Similarity=-0.025 Sum_probs=114.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHH
Q 035659 354 MIAGFAMYGCGREALDLFSRMQEAKV-KPNAV----TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTC 424 (655)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~ 424 (655)
.+..+...|++++|..++++...... .|+.. .+..+...+...|++++|...|+.+.+...-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776321 22211 2234555566777888888888888753111222 225788
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-----CC---CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHH
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM-----PI---VPG-ASVWGALLGACKIHENVELAEYACSHLLELEPEN------HGALV 489 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 489 (655)
+...|...|++++|+..++++ .. .+. ..++..+...|...|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888999998888888775 11 111 3478889999999999999999999999865322 56889
Q ss_pred HHHHHHHhcCC-chhHHHHHHHHHh
Q 035659 490 LLSNIYAKTGK-WDNVSELRKHMRV 513 (655)
Q Consensus 490 ~l~~~~~~~g~-~~~a~~~~~~m~~ 513 (655)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999998887654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.4e-07 Score=77.09 Aligned_cols=94 Identities=9% Similarity=0.062 Sum_probs=54.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
..+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.+..+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34445555556666666666665553 2222 345555666666666666666666666666666666666666666666
Q ss_pred cCCchhHHHHHHHHHh
Q 035659 498 TGKWDNVSELRKHMRV 513 (655)
Q Consensus 498 ~g~~~~a~~~~~~m~~ 513 (655)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666665544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-06 Score=78.31 Aligned_cols=169 Identities=14% Similarity=0.065 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 035659 262 PNEALSIFHELQLSKNVNPDEF-TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (655)
+++|+..|++.... .|+.. .+.. . ... ..........+.+...|.+.|++++|...|
T Consensus 20 ~~~A~~~~~~al~~---~p~~~~~~~~-~----~~~--------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 77 (208)
T 3urz_A 20 NGQAVSYFRQTIAL---NIDRTEMYYW-T----NVD--------------KNSEISSKLATELALAYKKNRNYDKAYLFY 77 (208)
T ss_dssp HHHHHHHHHHHHHH---CHHHHHHHHH-H----HSC--------------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCChHHHHH-h----hhc--------------chhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 78999999988763 45432 2222 0 000 000112233445666777777777777777
Q ss_pred hhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCc--HHHHHHHHHHcchhcC
Q 035659 341 HTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGL--VDEGRMFFNQMEPVYG 414 (655)
Q Consensus 341 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~ 414 (655)
++..+ .+...|..+...|...|++++|+..|++..+. .| +...+..+..++...|. .+.+...+.... .
T Consensus 78 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~---~ 152 (208)
T 3urz_A 78 KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS---S 152 (208)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---C
Confidence 76542 35667777777777777777777777777774 34 35556666655554443 333444444432 1
Q ss_pred ccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHH
Q 035659 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGAL 457 (655)
Q Consensus 415 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 457 (655)
..|....+..+..++...|++++|...|++. ...|+......+
T Consensus 153 ~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 153 PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 1222223333455566677788888888774 566765544433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.54 E-value=8e-07 Score=79.85 Aligned_cols=155 Identities=11% Similarity=-0.002 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHc
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCA-CSH 395 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 395 (655)
+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44555666677777777777777654 355667777777777777777777777766532 333222211111 111
Q ss_pred cCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---hhHHHHHHHHHHhcCCHHHH
Q 035659 396 SGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG---ASVWGALLGACKIHENVELA 470 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a 470 (655)
.+...+|...++...+. .|+ ...+..+...|...|++++|...|+++ ...|+ ...|..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12223456667666643 443 667777778888888888888888775 44443 45777788888888888888
Q ss_pred HHHHHHHhc
Q 035659 471 EYACSHLLE 479 (655)
Q Consensus 471 ~~~~~~~~~ 479 (655)
...+++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-06 Score=79.29 Aligned_cols=159 Identities=10% Similarity=-0.130 Sum_probs=99.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKS-RDVFVWSTMIAGFAMYG----CGREALDLFSRMQEAKVKPNAVTFTNVLC 391 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 391 (655)
+..+..|..+|...+++++|.+.|++..+ .+...+..+...|.. + +.++|+++|++..+.| +...+..|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 33444455555555555555555554432 234445555555544 4 6667777777766654 4555556666
Q ss_pred HHHc----cCcHHHHHHHHHHcchhcCccCC---cchHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCChhHHHHHHH
Q 035659 392 ACSH----SGLVDEGRMFFNQMEPVYGVVPG---VKHYTCMVDMLGR----AGLLDEAVEFIEKM-PIVPGASVWGALLG 459 (655)
Q Consensus 392 a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 459 (655)
.+.. .+++++|..+|+...+. .|. +..+..|..+|.. .+++++|..+|++. ...++...+..|..
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGM 170 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6655 67788888888777643 232 5667777777777 77788888888776 22245566777777
Q ss_pred HHHhc-C-----CHHHHHHHHHHHhccCC
Q 035659 460 ACKIH-E-----NVELAEYACSHLLELEP 482 (655)
Q Consensus 460 ~~~~~-g-----~~~~a~~~~~~~~~~~p 482 (655)
.|... | +.++|...++++.+.+.
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 76543 2 78888888888887764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-06 Score=78.67 Aligned_cols=145 Identities=13% Similarity=0.000 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 035659 320 TTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLV 399 (655)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 399 (655)
+..+...|.+.|++++|.+.|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44455566666666666666666665566666666666666666666666666665532 22344555555556666666
Q ss_pred HHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 035659 400 DEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG-ASVWGALLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 400 ~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
++|...|+...+. .|+..... +...| +...|+ ...|..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6666666655542 11110000 00000 012222 3678888888999999999999999999
Q ss_pred ccCCCC
Q 035659 479 ELEPEN 484 (655)
Q Consensus 479 ~~~p~~ 484 (655)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 999865
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-06 Score=74.18 Aligned_cols=108 Identities=13% Similarity=0.012 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHH
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGA 460 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 460 (655)
..+......+.+.|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 44556667777888888888888877653 34 4667778888888888888888888775 3334 46789999999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 035659 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNI 494 (655)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 494 (655)
+...|++++|+..|+++++++|++..++..|.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999998888777654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.6e-07 Score=88.44 Aligned_cols=190 Identities=11% Similarity=-0.038 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035659 318 YLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS 394 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 394 (655)
..+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..+++..+.. +-+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444455555555555555555554431 244555666666666666666666666665532 123455566666667
Q ss_pred ccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 035659 395 HSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYA 473 (655)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 473 (655)
..|++++|...|+...+. .|+ ...+...+....+......... .......++..+...+. .+ ..|+.++|.+.
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAERERELEE 157 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHHHHH
Confidence 777777777777666543 221 1111112222211111111111 22222333444444443 33 26888999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhc-CCchhHHHHHHHHHhC
Q 035659 474 CSHLLELEPENHGALVLLSNIYAKT-GKWDNVSELRKHMRVS 514 (655)
Q Consensus 474 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 514 (655)
++++++.+|++......+...+.+. +++++|.++|....+.
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999998877777777777766 7788999999887653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=76.68 Aligned_cols=127 Identities=9% Similarity=0.002 Sum_probs=92.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACK 462 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 462 (655)
.+..+...+...|++++|...|+...+. ...+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555566667777777777766543 1223556677777777778888887777765 2223 4678888888999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHH--HHHHhcCCchhHHHHHHHHHh
Q 035659 463 IHENVELAEYACSHLLELEPENHGALVLLS--NIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~ 513 (655)
..|++++|...++++++..|.+...+..+. ..+...|++++|.+.++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999998888775444 447888999999999887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=72.22 Aligned_cols=115 Identities=23% Similarity=0.246 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHH
Q 035659 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGA 460 (655)
Q Consensus 383 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 460 (655)
...+..+...+...|++++|.++++.+.+. ...+...+..+...|.+.|++++|..+++++ .. ..+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 344555556666667777777766666543 1223456666777777777777777777665 21 2356778888888
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 035659 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499 (655)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 499 (655)
+...|++++|...++++++..|.+...+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999999988888888887776544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-06 Score=74.63 Aligned_cols=96 Identities=13% Similarity=-0.029 Sum_probs=82.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445666777888899999999998876 3334 57788899999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 035659 497 KTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 497 ~~g~~~~a~~~~~~m~~~ 514 (655)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-06 Score=72.36 Aligned_cols=118 Identities=15% Similarity=0.036 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHH
Q 035659 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGA 460 (655)
Q Consensus 383 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 460 (655)
...+..+...+...|++++|...|+...+. ...+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 344555566666677777777777776643 1224556667777777778888877777765 2223 46788888888
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 035659 461 CKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502 (655)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 502 (655)
+...|++++|...++++++..|.+...+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999899999999998888763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.45 E-value=3.9e-05 Score=80.94 Aligned_cols=368 Identities=8% Similarity=-0.086 Sum_probs=209.4
Q ss_pred hHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCC-chHHHHHHHHHH
Q 035659 88 LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQ-FRVGQAIHGMVI 166 (655)
Q Consensus 88 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~-~~~a~~~~~~~~ 166 (655)
++.|+.+|++... .+-. |+++.+..+|++. .. ..|+...|..-++-..+.++ .+....+|+.++
T Consensus 11 i~~aR~vyer~l~-----------~~P~-~~~e~~~~ifera-l~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 11 LSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRC-LK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp -CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHH-ST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred hHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHH-hc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 6667776666532 1111 7788999999888 33 24788888877777666653 345677778777
Q ss_pred Hh-CC-CCChhHHHHHHHHHH----hcCCHHHHHHHHhhcCCCCeeHHHHHHHHHH---hCCChhHHHHHHHHHHHCCCC
Q 035659 167 KS-SF-EDDLFISNSLIHFYA----ICGDLAMAYCVFVMIGKKDVVSWNSMISGFV---QGGFFEKAIELYREMEMENVK 237 (655)
Q Consensus 167 ~~-g~-~~~~~~~~~li~~~~----~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~ 237 (655)
.. |. ..+..+|...+..+. ..|+++.++++|++...--...+..+-..|. +......+.+++.+..
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~----- 150 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL----- 150 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH-----
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh-----
Confidence 64 43 335667777776654 2356778888887765411111111111111 1111222222222211
Q ss_pred CCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcc--C-----CHHHHHHHHHHHHH
Q 035659 238 PDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQL--G-----AMDIGVQIHAKMKK 310 (655)
Q Consensus 238 p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~--g-----~~~~a~~~~~~~~~ 310 (655)
+. +..|..+++++...- -..+...|...+.--... + ..+.+..+|++++.
T Consensus 151 ----------------~~------y~~ar~~y~~~~~~~-~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~ 207 (493)
T 2uy1_A 151 ----------------PI------FQSSFQRYQQIQPLI-RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD 207 (493)
T ss_dssp ----------------HH------HHHHHHHHHHHHHHH-HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ----------------HH------HHHHHHHHHHHHHHH-hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHH
Confidence 01 113343444333210 001223444433332211 1 13456788998887
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC---------C
Q 035659 311 QGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS-R-DVFVWSTMIAGFAMYGCGREALDLFSRMQEAK---------V 379 (655)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~ 379 (655)
.. +.+..+|...+..+.+.|+.+.|..+|++... | +...|. .|+...+.++. ++.+.+.- .
T Consensus 208 ~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 208 SF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp HT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC---------
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhh
Confidence 64 56678888888889999999999999987543 2 222232 23332222222 22222210 0
Q ss_pred CC---CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCChhH
Q 035659 380 KP---NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG-LLDEAVEFIEKM--PIVPGASV 453 (655)
Q Consensus 380 ~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~ 453 (655)
.+ ....|...+....+.+.++.|..+|+.+ .. . ..+...|......-.+.| +.+.|..+|+.. ....++..
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 11 1244566666666778899999999998 32 1 123344443333333334 699999999875 22223556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
|...+.-....|+.+.|..+|+++. .....+...+..-...|+.+.+.++++++.+
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777887788999999999999983 3445666666666778999999998887764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.44 E-value=7.1e-07 Score=88.38 Aligned_cols=197 Identities=11% Similarity=0.011 Sum_probs=147.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSR 373 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (655)
..|++++|.+++++..+..- .. .+...+++++|...|... ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 35677888888888776421 11 011158899998887653 5678899999999999998
Q ss_pred HHHcCC---CC--CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHh
Q 035659 374 MQEAKV---KP--NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 374 m~~~g~---~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~ 444 (655)
..+... .+ -..+|..+...|...|++++|...|++..+.+.-..+ ..++..+...|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 865311 11 1347788888899999999999999987654211111 3577888889988 999999999987
Q ss_pred C-CC---CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCCchhHHHHHHH
Q 035659 445 M-PI---VPG----ASVWGALLGACKIHENVELAEYACSHLLELEPENH------GALVLLSNIYAKTGKWDNVSELRKH 510 (655)
Q Consensus 445 m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (655)
. .+ ..+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 11 111 46788889999999999999999999999865443 2667778888899999999999998
Q ss_pred HH
Q 035659 511 MR 512 (655)
Q Consensus 511 m~ 512 (655)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 77
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.5e-05 Score=75.41 Aligned_cols=196 Identities=9% Similarity=-0.063 Sum_probs=136.5
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchh---hHHHHHHHHHhcCCHHHHHHHHhhcCCC-----C
Q 035659 276 KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCY---LTTSLIDMYTKCGNLDKALEVFHTVKSR-----D 347 (655)
Q Consensus 276 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~ 347 (655)
|...|+..++..+...+.-.-+ .+.......+.. .+...+..+.+.|++++|.+.+++..+. +
T Consensus 40 g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~ 110 (293)
T 3u3w_A 40 GAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE 110 (293)
T ss_dssp TSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHH
T ss_pred CCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChH
Confidence 3367887777777766543211 111211122222 2333467788899999999999987542 1
Q ss_pred ----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCc---
Q 035659 348 ----VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK-PN----AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGV--- 415 (655)
Q Consensus 348 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--- 415 (655)
...+..+...+...|++++|+..|++....... ++ ..+++.+...+...|++++|..+|+.+.+...-
T Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 190 (293)
T 3u3w_A 111 FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD 190 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Confidence 113334666677778999999999999874322 22 236888888999999999999999998753211
Q ss_pred -cCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-hhHHHHHHHHHHhcC-CHHHHHHHHHHHhcc
Q 035659 416 -VPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPG-ASVWGALLGACKIHE-NVELAEYACSHLLEL 480 (655)
Q Consensus 416 -~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~ 480 (655)
.+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|..+..++...| ++++|...+++++++
T Consensus 191 ~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 191 NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 111 347888999999999999999998875 11222 568888999999999 469999999998864
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-06 Score=82.92 Aligned_cols=192 Identities=9% Similarity=-0.083 Sum_probs=123.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhhHHHH-------HHHHHhcCCHHHHHHHHhhcCCC---------C----------
Q 035659 294 QLGAMDIGVQIHAKMKKQGIKLNCYLTTSL-------IDMYTKCGNLDKALEVFHTVKSR---------D---------- 347 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~---------~---------- 347 (655)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...+..-..- +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5688888888888888865 4445666666 34444444444444444433321 1
Q ss_pred -----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC--cc
Q 035659 348 -----VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG--VK 420 (655)
Q Consensus 348 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 420 (655)
...+-.....+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...+. . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 112344566777788888888888877764 354444444555677888888888888755431 1 111 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM---PIVPG--ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLL 491 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 491 (655)
.+..+..++.+.|++++|++.|++. +..|. ...+.....++...|+.++|...|+++...+|. ...+..|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 5667777888888888888888876 22143 236667777788888888888888888888886 5444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-06 Score=88.19 Aligned_cols=93 Identities=16% Similarity=0.053 Sum_probs=80.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
..|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|.+..++..++.++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 57778888888889999998888876 3334 577899999999999999999999999999999999999999999999
Q ss_pred cCCchhH-HHHHHHHH
Q 035659 498 TGKWDNV-SELRKHMR 512 (655)
Q Consensus 498 ~g~~~~a-~~~~~~m~ 512 (655)
.|++++| .+.++.|.
T Consensus 277 ~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 IRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998 44666654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-06 Score=72.63 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHH
Q 035659 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLG 459 (655)
Q Consensus 383 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 459 (655)
...+..+...+...|++++|...|+...+. .| +...+..+...|...|++++|.+.+++. ...| +...|..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 344445555555556666666655555432 22 3445555666666666666666666554 2222 4567777888
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 500 (655)
.+...|++++|...++++++.+|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888776653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.3e-06 Score=78.72 Aligned_cols=182 Identities=9% Similarity=-0.020 Sum_probs=139.8
Q ss_pred hcCCHHHHHHHHhhcCC---CChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCCH---------------
Q 035659 329 KCGNLDKALEVFHTVKS---RDVFVWSTM-------IAGFAMYGCGREALDLFSRMQEAKVKPNA--------------- 383 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 383 (655)
..++.+.|.+.|.++.. .....|+.+ ...+...++..+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999874 345688888 4666666666777766666554 23321
Q ss_pred -------HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCh----h
Q 035659 384 -------VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGA----S 452 (655)
Q Consensus 384 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 452 (655)
.....+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12234556788899999999999998753 354336666777899999999999999877433433 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC--CC-CcchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELE--PE-NHGALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
++..+..++...|++++|+..|+++.... |. .......++.++.+.|+.++|..+|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 78888999999999999999999998543 44 44578889999999999999999999998853
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-05 Score=79.32 Aligned_cols=163 Identities=10% Similarity=-0.043 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--H
Q 035659 318 YLTTSLIDMYTKCGNLDKALEVFHTVKS--R-D------VFVWSTMIAGFAMYGCGREALDLFSRMQEAKV---KPN--A 383 (655)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~ 383 (655)
..+...+..+...|++++|.+.++...+ + . ...+..+...+...|++++|+..|++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455667788889999999888875432 1 1 12234455666778899999999998875321 112 3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-C------CCCC-
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-----VKHYTCMVDMLGRAGLLDEAVEFIEKM-P------IVPG- 450 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~li~~~~~~g~~~~A~~~~~~m-~------~~p~- 450 (655)
.++..+...|...|++++|..+|+++.+.....|+ ..+|..+...|.+.|++++|++.+++. . ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47788888899999999999999988743222233 257888899999999999999998875 1 1111
Q ss_pred hhHHHHHHHHHHhcCCHHHH-HHHHHHHhcc
Q 035659 451 ASVWGALLGACKIHENVELA-EYACSHLLEL 480 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 480 (655)
..+|..+...+...|++++| ...+++++++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788888999999999999 7778887754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.9e-06 Score=70.33 Aligned_cols=95 Identities=14% Similarity=0.044 Sum_probs=77.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
..+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.+..+|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34566677778888888888888775 2233 567888888888899999999999999999999888899999999999
Q ss_pred cCCchhHHHHHHHHHhC
Q 035659 498 TGKWDNVSELRKHMRVS 514 (655)
Q Consensus 498 ~g~~~~a~~~~~~m~~~ 514 (655)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999988887663
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=71.10 Aligned_cols=95 Identities=17% Similarity=0.055 Sum_probs=83.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
..+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|.+..++..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45667778889999999999999886 3344 578899999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhC
Q 035659 498 TGKWDNVSELRKHMRVS 514 (655)
Q Consensus 498 ~g~~~~a~~~~~~m~~~ 514 (655)
.|++++|.+.+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.6e-06 Score=67.75 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=80.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CcchHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHENVELAEYACSHLLELEPE--NHGALVLLSNI 494 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 494 (655)
...+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 456677778888888888888888775 222 35678888888899999999999999999999998 88899999999
Q ss_pred HHhc-CCchhHHHHHHHHHhCC
Q 035659 495 YAKT-GKWDNVSELRKHMRVSG 515 (655)
Q Consensus 495 ~~~~-g~~~~a~~~~~~m~~~g 515 (655)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999998887654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.28 E-value=5e-06 Score=76.13 Aligned_cols=150 Identities=14% Similarity=0.024 Sum_probs=66.3
Q ss_pred cCCHHHHHH---HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHH
Q 035659 330 CGNLDKALE---VFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEA----KVKP-NAVTFTNVLCACSHSGLVDE 401 (655)
Q Consensus 330 ~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~ 401 (655)
.|++++|.+ .+..-.......+..+...|...|++++|+..+++.... +..| ....+..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 345555555 332222223344555555555555555555555554431 1111 12334444555556666666
Q ss_pred HHHHHHHcchhcCccC-C----cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHH
Q 035659 402 GRMFFNQMEPVYGVVP-G----VKHYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG----ASVWGALLGACKIHENVE 468 (655)
Q Consensus 402 a~~~~~~~~~~~~~~p-~----~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~ 468 (655)
|...+++..+...-.+ + ...+..+...+...|++++|.+.+++. +..++ ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 6666555443211111 1 123444445555555555555555443 00011 122344444555555555
Q ss_pred HHHHHHHHHhc
Q 035659 469 LAEYACSHLLE 479 (655)
Q Consensus 469 ~a~~~~~~~~~ 479 (655)
+|...++++++
T Consensus 165 ~A~~~~~~al~ 175 (203)
T 3gw4_A 165 EAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-05 Score=72.40 Aligned_cols=152 Identities=13% Similarity=0.019 Sum_probs=103.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC------C---ChhHHHHHHHHHHHcCC
Q 035659 293 AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS------R---DVFVWSTMIAGFAMYGC 363 (655)
Q Consensus 293 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~---~~~~~~~li~~~~~~g~ 363 (655)
...|++++|.++++.+.. .......++..+...|...|++++|...|++... . ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356778888885544433 2224566777888888888888888888877543 1 34567778888888899
Q ss_pred hHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcC
Q 035659 364 GREALDLFSRMQEA----KVKP--NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAG 433 (655)
Q Consensus 364 ~~~A~~~~~~m~~~----g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g 433 (655)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++..+...-..+ ...+..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99998888877653 1121 1345667777888899999999999887653211122 234577888899999
Q ss_pred CHHHHHHHHHhC
Q 035659 434 LLDEAVEFIEKM 445 (655)
Q Consensus 434 ~~~~A~~~~~~m 445 (655)
++++|.+.+++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999888764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-06 Score=77.70 Aligned_cols=118 Identities=9% Similarity=0.026 Sum_probs=73.3
Q ss_pred ccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHH-HHhcCCH--HH
Q 035659 395 HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGA-CKIHENV--EL 469 (655)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~~ 469 (655)
..|++++|...++...+. ...+...|..+...|...|++++|...|++. ...| +...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345555666666555432 1123455666666666666666666666654 1122 45566666666 6667776 77
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 470 AEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 470 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
|...++++++.+|.+...+..++.+|...|++++|...++...+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777776664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=7.3e-06 Score=69.66 Aligned_cols=97 Identities=14% Similarity=0.037 Sum_probs=81.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4567777788888888888888888775 2233 4678888888899999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 035659 496 AKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~~ 514 (655)
...|++++|.+.++...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999887764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.4e-06 Score=73.27 Aligned_cols=93 Identities=11% Similarity=0.024 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 498 (655)
.+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.+...|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4444455555555555555555543 2222 3455555555555666666666666666666665555666666666666
Q ss_pred CCchhHHHHHHHHHh
Q 035659 499 GKWDNVSELRKHMRV 513 (655)
Q Consensus 499 g~~~~a~~~~~~m~~ 513 (655)
|++++|.+.+++..+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 666666665555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00046 Score=68.12 Aligned_cols=164 Identities=10% Similarity=0.099 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc-C-CHHHHHHHH
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQLG-AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKC-G-NLDKALEVF 340 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~~~A~~~~ 340 (655)
+|++++.++.... +-+...|+.--.++...| .++++.++++.++... +-+..+|+.-...+.+. + +.+++.+++
T Consensus 72 ~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 72 RALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 6666666666532 223444555555555566 4777777777777654 45566666666666555 5 677777777
Q ss_pred hhcCCC---ChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-------HHHH
Q 035659 341 HTVKSR---DVFVWSTMIAGFAMYGCGR--------EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL-------VDEG 402 (655)
Q Consensus 341 ~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-------~~~a 402 (655)
+.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+... -|...|+.....+.+.+. ++++
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 777653 4456665555555555444 77777777777532 255666666555555554 5566
Q ss_pred HHHHHHcchhcCccC-CcchHHHHHHHHHhcCC
Q 035659 403 RMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGL 434 (655)
Q Consensus 403 ~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~ 434 (655)
+++++.+... .| |...|+.+-..+.+.|+
T Consensus 228 Le~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 228 LIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 6666655532 23 34445554444544443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.21 E-value=9.2e-06 Score=67.30 Aligned_cols=96 Identities=25% Similarity=0.298 Sum_probs=86.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
...+..+...+.+.|++++|.++++++ .. ..+..+|..+...+...|++++|...++++++..|.+...+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 457788889999999999999999886 22 2357789999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 035659 497 KTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 497 ~~g~~~~a~~~~~~m~~~ 514 (655)
..|++++|.+.++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=8.1e-06 Score=74.73 Aligned_cols=170 Identities=9% Similarity=-0.054 Sum_probs=101.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH
Q 035659 324 IDMYTKCGNLDKALEVFHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400 (655)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 400 (655)
+......|+++++.+.|+.-.+. ....|..+...+...|++++|+..|++.... .|+...+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 33344456666666666543321 3445666677777778888888877777763 2221111000 000
Q ss_pred HHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 035659 401 EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
.-. .. .....|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...+++++
T Consensus 81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 00 01246677777888888888888888775 2233 56788889999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCCchhHH-HHHHHHHhC
Q 035659 479 ELEPENHGALVLLSNIYAKTGKWDNVS-ELRKHMRVS 514 (655)
Q Consensus 479 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 514 (655)
+++|.+..++..+..++...|+.+++. ..++.|...
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999888888776 455555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-05 Score=65.29 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=61.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACK 462 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 462 (655)
.+..+...+...|++++|...|+..... ...+...+..+...|.+.|++++|...+++. ...| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444555555555555555555432 1123445555555566666666666665554 2222 3556666667777
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 035659 463 IHENVELAEYACSHLLELEPENHGALVLLSNI 494 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 494 (655)
..|++++|...++++++.+|.+...+..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777666655555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=9.8e-06 Score=66.39 Aligned_cols=96 Identities=9% Similarity=0.068 Sum_probs=86.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.+...+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456777888999999999999999986 2233 67888999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 035659 497 KTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 497 ~~g~~~~a~~~~~~m~~~ 514 (655)
..|++++|.+.++...+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999988764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=69.39 Aligned_cols=104 Identities=7% Similarity=-0.017 Sum_probs=85.7
Q ss_pred CCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHH
Q 035659 379 VKPN-AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVW 454 (655)
Q Consensus 379 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 454 (655)
+.|+ ...+..+...+.+.|++++|...|+.+.+. .| +...|..+..+|.+.|++++|++.|++. .+.| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 3443 345667777888999999999999998853 45 4678888999999999999999999886 3344 46789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 455 GALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 455 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
..+..++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999998653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=9.1e-05 Score=73.13 Aligned_cols=215 Identities=13% Similarity=0.093 Sum_probs=157.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHc-C-ChHHHH
Q 035659 295 LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG-NLDKALEVFHTVKS---RDVFVWSTMIAGFAMY-G-CGREAL 368 (655)
Q Consensus 295 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~ 368 (655)
.+..++|.++.+.++..+ +-+..+|+.--..+...| .++++++.++.+.. ++..+|+.-...+.+. + +.++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344568899999999876 556778888888888888 59999999999864 4667888887777776 7 899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH--------HHHHHHHHcchhcCccCCcchHHHHHHHHHhcCC------
Q 035659 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD--------EGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGL------ 434 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~------ 434 (655)
++++++.+... -|...|..-.-.+.+.|..+ +++++++.+.+. ..-|...|+....++.+.++
T Consensus 146 ~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchH
Confidence 99999998642 26677766555555555555 899999988864 23356677777777877776
Q ss_pred -HHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhccC------CCCc
Q 035659 435 -LDEAVEFIEKM-PIVP-GASVWGALLGACKIHENV--------------------ELAEYACSHLLELE------PENH 485 (655)
Q Consensus 435 -~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~ 485 (655)
++++++.++++ ...| |...|+.+-..+.+.|+. .....+...+.... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 78888888775 3333 678998888888776654 23333333333332 4566
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 486 GALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.+...|+.+|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7788899999999999999999999864
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.5e-06 Score=69.70 Aligned_cols=94 Identities=10% Similarity=0.059 Sum_probs=78.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc-------hHHH
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHG-------ALVL 490 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 490 (655)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35667788888899999999988875 3344 4678889999999999999999999999998876643 6777
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 035659 491 LSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999988765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=72.33 Aligned_cols=127 Identities=10% Similarity=0.041 Sum_probs=96.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH-HHhcCCH--
Q 035659 359 AMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM-LGRAGLL-- 435 (655)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~-~~~~g~~-- 435 (655)
...|++++|+..|++..... +.+...+..+...+...|++++|...|+.+.+.. ..+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677888888888877753 3356777788888888999999999998887541 2245677777777 7788998
Q ss_pred HHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 436 DEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 436 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
++|...+++. ...| +...|..+...+...|++++|...++++++..|++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998876 3334 467888899999999999999999999999999876543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=9.9e-06 Score=68.16 Aligned_cols=97 Identities=10% Similarity=0.044 Sum_probs=87.6
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|.+...+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3567888889999999999999999986 4444 5788999999999999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 035659 496 AKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~~ 514 (655)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.1e-05 Score=67.62 Aligned_cols=111 Identities=13% Similarity=-0.072 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHH
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWG 455 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 455 (655)
+...+..+...+...|++++|...|+...+ ..|+ ...|..+...|...|++++|.+.+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344455555556666666666666666553 2344 455666666677777777777776654 2223 456777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 456 ALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 456 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
.+..++...|++++|...++++++.+|.+...+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777888888888888888888888887776666555543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0003 Score=69.12 Aligned_cols=223 Identities=13% Similarity=0.074 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 035659 263 NEALSIFHELQLSKNVNPDE-FTFVSVLSACAQLGA----------MDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331 (655)
Q Consensus 263 ~~A~~l~~~m~~~~~~~p~~-~t~~~ll~~~~~~g~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 331 (655)
++|++++..+.. +.|+. ..|+.--..+...+. ++++..+++.+.... +-+..+|+.-.-.+.+.|
T Consensus 47 ~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 47 ESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 589999999987 44554 345543333333332 678888888888765 567778887777777777
Q ss_pred --CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---------
Q 035659 332 --NLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGC-GREALDLFSRMQEAKVKPNAVTFTNVLCACSHS--------- 396 (655)
Q Consensus 332 --~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--------- 396 (655)
.++++..+++.+.+ +|..+|+--.-.+...|. ++++++.++++.+..+ -|...|+.....+.+.
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC-----
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccc
Confidence 48889888888764 467788887777778887 5889999999988643 3566666555444443
Q ss_pred -----CcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCCChhHHHHHH
Q 035659 397 -----GLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRA-----------GLLDEAVEFIEKM-PIVPGASVWGALL 458 (655)
Q Consensus 397 -----g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~~~ll 458 (655)
+.++++++++...... .| |...|+-+-..+.+. +.++++++.++++ ...||. .|..+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~ 277 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLT 277 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHH
Confidence 4577777777777643 34 355555554455444 3566777777665 445554 344322
Q ss_pred HHH-----HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 035659 459 GAC-----KIHENVELAEYACSHLLELEPENHGALVLLSNI 494 (655)
Q Consensus 459 ~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 494 (655)
.+. ...+..++....+.++++++|....-|..+...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 221 234666777777778877777666555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-05 Score=68.52 Aligned_cols=97 Identities=16% Similarity=0.047 Sum_probs=88.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 492 (655)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++++..|.+...+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4567788889999999999999999986 56677 678889999999999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHhC
Q 035659 493 NIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.7e-06 Score=72.32 Aligned_cols=103 Identities=10% Similarity=-0.059 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHH
Q 035659 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLG 459 (655)
Q Consensus 383 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 459 (655)
...+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|++.|++. ...| +...|..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 344555666777888888888888877653 34 4667777788888888888888888775 3333 4678888888
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
++...|++++|+..+++++++.|+++...
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999999988776553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.1e-05 Score=69.43 Aligned_cols=107 Identities=14% Similarity=0.032 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHH
Q 035659 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLG 459 (655)
Q Consensus 383 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 459 (655)
...+..+...+...|++++|+..|+...+. .| +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 445666666777777777777777777653 33 4567777888888888888888888775 3334 4778899999
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHGALVLLS 492 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 492 (655)
++...|++++|...++++++++|++...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999988665544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.12 E-value=3.1e-05 Score=68.01 Aligned_cols=128 Identities=13% Similarity=-0.029 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~ 428 (655)
..|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+. ...+...|..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345556666666777777777777666542 224556666666677777777777777776643 12235566677777
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-ChhHHHH--HHHHHHhcCCHHHHHHHHHHHhc
Q 035659 429 LGRAGLLDEAVEFIEKM-PIVP-GASVWGA--LLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
|.+.|++++|.+.+++. ...| +...+.. ++..+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77777777777777665 2222 3334433 33336666777777777776554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=77.60 Aligned_cols=96 Identities=10% Similarity=-0.014 Sum_probs=52.6
Q ss_pred eHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHH
Q 035659 206 VSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTF 285 (655)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~ 285 (655)
..|..+...+.+.|++++|+..|++..+.. +-+...|..+...+.+.|+++ +|+..+++..... +-+...+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~------~A~~~~~~al~~~--p~~~~~~ 75 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPE------QALADCRRALELD--GQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH------HHHHHHHHHTTSC--TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHhC--CCCHHHH
Confidence 345555566666666666666666555432 113445555555555555544 5555555554432 2334455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH
Q 035659 286 VSVLSACAQLGAMDIGVQIHAKMKK 310 (655)
Q Consensus 286 ~~ll~~~~~~g~~~~a~~~~~~~~~ 310 (655)
..+..++...|++++|...+.++.+
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5556666666666666666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=2e-05 Score=65.94 Aligned_cols=108 Identities=10% Similarity=-0.084 Sum_probs=73.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHH
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGAC 461 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 461 (655)
.+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4445555566667777777777666543 23 3556667777777777777777777665 2233 466788888888
Q ss_pred HhcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHH
Q 035659 462 KIHENVELAEYACSHLLELE------PENHGALVLLSNIY 495 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 495 (655)
...|++++|...++++++++ |.+......+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888888 77666666555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-05 Score=68.83 Aligned_cols=105 Identities=10% Similarity=-0.027 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHH
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGA 460 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 460 (655)
..+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|+..|++. ...| +...|..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34445555677778888888888777653 34 4566777777888888888888888775 2233 45678888888
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 035659 461 CKIHENVELAEYACSHLLELEPENHGALVLL 491 (655)
Q Consensus 461 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 491 (655)
+...|++++|...+++++++.|.++......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 9999999999999999999988777655443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.09 E-value=1e-05 Score=69.75 Aligned_cols=62 Identities=10% Similarity=-0.068 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------CCCCcchH----HHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLEL-------EPENHGAL----VLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
..|..+..++...|++++|+..+++++++ +|++..+| +..+.++...|++++|.+.|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888899999999999999999988 99998899 9999999999999999999998766
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.9e-05 Score=66.00 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=86.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 418 GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.+...+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3567788889999999999999999886 2233 6788999999999999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 035659 496 AKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 496 ~~~g~~~~a~~~~~~m~~~ 514 (655)
...|++++|.+.++...+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988774
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-05 Score=66.56 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-h---hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHH
Q 035659 423 TCMVDMLGRAGLLDEAVEFIEKM-PIVPG-A---SVWGALLGACKIHENVELAEYACSHLLELEPEN---HGALVLLSNI 494 (655)
Q Consensus 423 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 494 (655)
..+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455566677777777766664 22232 2 366666677777777777777777777777776 5567777777
Q ss_pred HHhcCCchhHHHHHHHHHhC
Q 035659 495 YAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 495 ~~~~g~~~~a~~~~~~m~~~ 514 (655)
|...|++++|.+.++.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.9e-05 Score=83.15 Aligned_cols=116 Identities=9% Similarity=0.022 Sum_probs=92.3
Q ss_pred HHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHH
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVE 468 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 468 (655)
.+...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 455678888888888887753 34 3677888888888888999988888876 3344 4678999999999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHH--HHhcCCchhHHHHHHH
Q 035659 469 LAEYACSHLLELEPENHGALVLLSNI--YAKTGKWDNVSELRKH 510 (655)
Q Consensus 469 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 510 (655)
+|++.++++++.+|.+..++..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988888 8889999999998874
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.04 E-value=2.9e-05 Score=81.34 Aligned_cols=145 Identities=12% Similarity=0.022 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 446667777777777777777777777663 2221100 0 000000 000 01356778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHH
Q 035659 428 MLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVS 505 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 505 (655)
+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|.+..++..+..++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999888876 3333 57789999999999999999999999999999999999999999999999999876
Q ss_pred H-HHHHHHhC
Q 035659 506 E-LRKHMRVS 514 (655)
Q Consensus 506 ~-~~~~m~~~ 514 (655)
+ .++.|..+
T Consensus 406 ~~~~~~~f~k 415 (457)
T 1kt0_A 406 RRIYANMFKK 415 (457)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhh
Confidence 4 45555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.4e-06 Score=68.54 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHH
Q 035659 432 AGLLDEAVEFIEKM-PI---VPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506 (655)
Q Consensus 432 ~g~~~~A~~~~~~m-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 506 (655)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666664 33 132 45666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 035659 507 LRKHMRV 513 (655)
Q Consensus 507 ~~~~m~~ 513 (655)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.98 E-value=3.1e-05 Score=65.66 Aligned_cols=100 Identities=10% Similarity=-0.122 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHH
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLG 459 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 459 (655)
+...+..+...+...|++++|...|+...+. ...+...|..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666677777777777777766643 1223556677777777777777777777665 2223 4667888888
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCC
Q 035659 460 ACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888888776
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.4e-05 Score=67.12 Aligned_cols=64 Identities=19% Similarity=0.106 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4678888888889999999999999999999999999999999999999999999988887664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.97 E-value=3e-05 Score=62.72 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---ChhHHHHHHH
Q 035659 384 VTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP---GASVWGALLG 459 (655)
Q Consensus 384 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~ 459 (655)
..+..+...+...|++++|...|+...+. ...+...+..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34455556666777777777777776643 1223556677777777888888888777765 2333 4677888888
Q ss_pred HHHhc-CCHHHHHHHHHHHhccCCCCc
Q 035659 460 ACKIH-ENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 460 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.+... |++++|.+.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 899999999999988887654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.4e-05 Score=65.42 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=78.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------cchHHH
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGACKIHENVELAEYACSHLLELEPEN-------HGALVL 490 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 490 (655)
..+..+...+...|++++|...+++. .. ..+...|..+...+...|++++|...++++++..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 35666777788888888888888775 22 2356778888888999999999999999999987765 778889
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhC
Q 035659 491 LSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
++.+|...|++++|.+.++...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988774
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=6.7e-05 Score=77.84 Aligned_cols=162 Identities=6% Similarity=-0.097 Sum_probs=96.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHccCcHHHHHHHHHHcchhc---CccCC-cch
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQEAK-VKPNAV----TFTNVLCACSHSGLVDEGRMFFNQMEPVY---GVVPG-VKH 421 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~ 421 (655)
+..+...|...|++++|.+++.++...- ..++.. ..+.+-..+...|..+++..++....... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666677777777777666654421 111211 11122222344567777777776654321 11111 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C--CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---CCC----cc
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-----P--IVPG-ASVWGALLGACKIHENVELAEYACSHLLELE---PEN----HG 486 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 486 (655)
+..+...|...|++++|..++++. . -++. ..++..++..|...|++++|...+++++... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777888888888888777764 1 1122 3467777778888888888888888777653 221 23
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 487 ALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
.+..++..+...|++++|...+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566777777888888877766554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=4.3e-05 Score=80.44 Aligned_cols=116 Identities=12% Similarity=0.103 Sum_probs=61.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH
Q 035659 324 IDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVD 400 (655)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 400 (655)
...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|++.+++..+.. +-+...+..+..++...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3345556666666666665432 245566666666666666666666666666532 123455555556666666666
Q ss_pred HHHHHHHHcchhcCccCC-cchHHHHHHH--HHhcCCHHHHHHHHH
Q 035659 401 EGRMFFNQMEPVYGVVPG-VKHYTCMVDM--LGRAGLLDEAVEFIE 443 (655)
Q Consensus 401 ~a~~~~~~~~~~~~~~p~-~~~y~~li~~--~~~~g~~~~A~~~~~ 443 (655)
+|.+.|+++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666665543 222 2333333333 555566666666655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.95 E-value=6e-05 Score=62.86 Aligned_cols=106 Identities=10% Similarity=-0.018 Sum_probs=57.2
Q ss_pred HHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC----C-CCCC----hhHHHHHH
Q 035659 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM----P-IVPG----ASVWGALL 458 (655)
Q Consensus 388 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m----~-~~p~----~~~~~~ll 458 (655)
.+...+...|++++|..+|+...+. ...+...+..+...|...|++++|...+++. + ..++ ..+|..+.
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 3334444444444444444444432 1112334444455555555555555555443 1 0112 45667777
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
..+...|++++|...++++++..| ++.....+..+..
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 777788888888888888888777 4555555554443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0012 Score=64.70 Aligned_cols=216 Identities=13% Similarity=0.097 Sum_probs=152.8
Q ss_pred ccCCH-HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC----------HHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 035659 294 QLGAM-DIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGN----------LDKALEVFHTVKS---RDVFVWSTMIAGFA 359 (655)
Q Consensus 294 ~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~ 359 (655)
+.|.+ ++|.++.+.++..+ +-+..+|+.--..+...|. ++++..+++.+.. ++..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 34444 47888888888765 3445566654444444333 6788888887753 57788888888888
Q ss_pred HcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-HHHHHHHHHHcchhcCccCCcchHHHHHHHHHhc----
Q 035659 360 MYGC--GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGL-VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRA---- 432 (655)
Q Consensus 360 ~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~---- 432 (655)
..++ +++++++++++.+... -|...|+.-...+...|. ++++++.++.+.+. ..-|...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 8999999999998643 377777777777777887 69999999999864 233566677666666655
Q ss_pred ----------CCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCCcchHH
Q 035659 433 ----------GLLDEAVEFIEKM-PIV-PGASVWGALLGACKIH-----------ENVELAEYACSHLLELEPENHGALV 489 (655)
Q Consensus 433 ----------g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~ 489 (655)
+.++++++.+++. ... -|...|+.+-..+... +.++++++.++++++++|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4588898888876 223 3678898776666555 4588999999999999998855544
Q ss_pred HHHHHHH---hcCCchhHHHHHHHHHh
Q 035659 490 LLSNIYA---KTGKWDNVSELRKHMRV 513 (655)
Q Consensus 490 ~l~~~~~---~~g~~~~a~~~~~~m~~ 513 (655)
.++.... ..|..++....+.++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4433222 35666777777777766
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=5e-05 Score=66.06 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC------CCcc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM----PIVPG----ASVWGALLGACKIHENVELAEYACSHLLELEP------ENHG 486 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 486 (655)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444555555555555555443 00011 34556666667777777777777777766421 1134
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 487 ALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 667788888888888888888876654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00012 Score=61.20 Aligned_cols=100 Identities=13% Similarity=0.010 Sum_probs=67.5
Q ss_pred HHHHHHccCcHHHHHHHHHHcchhcCccCCc----chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----hhHHHHHHH
Q 035659 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVPGV----KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG----ASVWGALLG 459 (655)
Q Consensus 389 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~ 459 (655)
+...+...|++++|...|+.+.+. .|+. ..+..+...|.+.|++++|...+++. ...|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344556667777777777766643 2332 35666667777777777777777665 22233 456777788
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 035659 460 ACKIHENVELAEYACSHLLELEPENHGALVLL 491 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 491 (655)
++...|++++|...++++++..|+++......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 88888999999999999998888776554433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=1e-05 Score=73.97 Aligned_cols=96 Identities=14% Similarity=-0.011 Sum_probs=79.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-G----------------ASVWGALLGACKIHENVELAEYACSHLLEL 480 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 480 (655)
...+..+...+.+.|++++|.+.|++. ...| + ..+|..+..++...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345566667777778888887777764 1112 1 268888999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 481 EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 481 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+|.+..++..++.+|...|++++|.+.++...+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00015 Score=60.71 Aligned_cols=92 Identities=10% Similarity=-0.027 Sum_probs=53.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---C-------hhHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---D-------VFVWST 353 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-------~~~~~~ 353 (655)
.+..+...+.+.|++++|.+.|.++++.. +.+...|+.+..+|.+.|++++|++.|+...+. + ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44555666666677777777777666653 344556666666666666666666666654321 0 123444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 035659 354 MIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
+...+...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555566666666555554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.85 E-value=9e-05 Score=77.55 Aligned_cols=124 Identities=9% Similarity=-0.010 Sum_probs=95.5
Q ss_pred HHHccCcHHHHHHHHHHcchhcC--ccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-hhHHH
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYG--VVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM---------PIVPG-ASVWG 455 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 455 (655)
.+..+|++++|+.++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35567888888888777654321 1222 456888888999999999998888775 33455 46889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCcc---hHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 456 ALLGACKIHENVELAEYACSHLLE-----LEPENHG---ALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 456 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
.|...|...|++++|+.+++++++ ++|+++. ....|..++...|++++|+.+++.++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 4676654 45578888889999999999999998754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.85 E-value=6.7e-05 Score=76.01 Aligned_cols=137 Identities=9% Similarity=-0.027 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHH
Q 035659 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMV 426 (655)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li 426 (655)
...|..+...+.+.|++++|+..|++..+. .++.. .....+ ... ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHH---HHHHHHHHHHHHHH
Confidence 456777788888888888888888877652 11100 000111 111 1122 356788888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 504 (655)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|.+...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886 5555 4678899999999999999999999999999999999999999999988888777
Q ss_pred HH
Q 035659 505 SE 506 (655)
Q Consensus 505 ~~ 506 (655)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00018 Score=71.82 Aligned_cols=90 Identities=10% Similarity=0.018 Sum_probs=41.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAM 360 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 360 (655)
.|..+..++.+.|++++|...++++++.. +.+...+..+..+|.+.|++++|...|++..+ .+...+..+...+.+
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444432 23344444455555555555555555544321 233444445555555
Q ss_pred cCChHHH-HHHHHHH
Q 035659 361 YGCGREA-LDLFSRM 374 (655)
Q Consensus 361 ~g~~~~A-~~~~~~m 374 (655)
.|+.++| ..+|++|
T Consensus 277 ~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 277 IRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 5555544 2344444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=6e-05 Score=65.53 Aligned_cols=97 Identities=11% Similarity=0.048 Sum_probs=54.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-Chh
Q 035659 385 TFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVP-GAS 452 (655)
Q Consensus 385 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~ 452 (655)
.+..+...+...|++++|..+++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444555555555555555554432111111 234555566666666666666666553 1011 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELE 481 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 481 (655)
++..+...+...|++++|...++++++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56667777888888888888888877653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=4.9e-05 Score=63.15 Aligned_cols=97 Identities=12% Similarity=0.019 Sum_probs=66.0
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHH
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACK 462 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 462 (655)
+..+...+.+.|++++|...|+...+. .| +...|..+..++.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334455666777777777777777643 34 4566777777777888888888777775 3334 4567788888888
Q ss_pred hcCCHHHHHHHHHHHhccCCCCc
Q 035659 463 IHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
..|++++|+..++++++.+|.+.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=3e-05 Score=66.76 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-hhHH----HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM--------PIVPG-ASVW----GALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
.|..+..++.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|+++++++|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666665553 33776 4688 899999999999999999999999999988665
Q ss_pred HH
Q 035659 488 LV 489 (655)
Q Consensus 488 ~~ 489 (655)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00041 Score=71.84 Aligned_cols=191 Identities=8% Similarity=-0.100 Sum_probs=133.0
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCc----------------hhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----Ch
Q 035659 290 SACAQLGAMDIGVQIHAKMKKQGIKLN----------------CYLTTSLIDMYTKCGNLDKALEVFHTVKSR-----DV 348 (655)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~~~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~ 348 (655)
..+.+.|++++|.+.+..+++...... ...+..|+..|.+.|++++|.+.+..+.+. +.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345677899999999988887532211 123677888999999999999988876531 11
Q ss_pred ----hHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-
Q 035659 349 ----FVWSTMIAGFAMYGCGREALDLFSRMQE----AKVKPN-AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG- 418 (655)
Q Consensus 349 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 418 (655)
...+.+...+...|+.++|.+++++... .+..+. ..++..+...+...|++++|..+++.+.....-..+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1233333344456888999988887754 233333 456677888899999999999999887653221111
Q ss_pred ---cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 035659 419 ---VKHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPG--ASVWGALLGACKIHENVELAEYACSHLLEL 480 (655)
Q Consensus 419 ---~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 480 (655)
...|..++..|...|++++|..++++. +..+. ...+..+...+...+++++|...+.++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 457888889999999999999988765 21111 245666667778889999999888888763
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.4e-05 Score=64.57 Aligned_cols=93 Identities=9% Similarity=0.017 Sum_probs=63.7
Q ss_pred cCcHHHHHHHHHHcchhcCc-cC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHH
Q 035659 396 SGLVDEGRMFFNQMEPVYGV-VP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAE 471 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 471 (655)
.|++++|+..|++..+. +. .| +...+..+...|.+.|++++|++.|++. ...| +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666777777776642 10 12 3456777777788888888888888775 2233 4677888888888999999999
Q ss_pred HHHHHHhccCCCCcchHH
Q 035659 472 YACSHLLELEPENHGALV 489 (655)
Q Consensus 472 ~~~~~~~~~~p~~~~~~~ 489 (655)
..++++++..|.++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999988887765443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00081 Score=72.06 Aligned_cols=167 Identities=9% Similarity=0.013 Sum_probs=117.6
Q ss_pred HHHHHHHhhcCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--c
Q 035659 334 DKALEVFHTVKS---RDVFVWSTMIAGFAMYGC----------GREALDLFSRMQEAKVKPNAVTFTNVLCACSHSG--L 398 (655)
Q Consensus 334 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--~ 398 (655)
++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+...+ +...|..-..++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 444555555432 234455555555555555 67788888888775422 5666766666677777 6
Q ss_pred HHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhc-----------
Q 035659 399 VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAG-LLDEAVEFIEKM-PIVP-GASVWGALLGACKIH----------- 464 (655)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----------- 464 (655)
+++++++++.+.+. -.-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 68888888888753 1234556666666777777 788888888876 3334 567888777776653
Q ss_pred ---CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchh
Q 035659 465 ---ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 465 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 503 (655)
+.++++.+.++++++.+|.+..+|..+..++.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.74 E-value=3.3e-05 Score=77.33 Aligned_cols=147 Identities=9% Similarity=-0.057 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777777788889999999999988773 455432 233444444433221 126778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH-hcCCchhH
Q 035659 428 MLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA-KTGKWDNV 504 (655)
Q Consensus 428 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a 504 (655)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..|+++++++|.+..++..|..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998876 3334 57788999999999999999999999999999999888888887743 45667777
Q ss_pred HHHHHHHHhC
Q 035659 505 SELRKHMRVS 514 (655)
Q Consensus 505 ~~~~~~m~~~ 514 (655)
.+.++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777777553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.73 E-value=8.4e-05 Score=65.28 Aligned_cols=76 Identities=17% Similarity=0.021 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-chHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENH-GALVLLSNI 494 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 494 (655)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|++. .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 457788888899999999999888875 3334 467889999999999999999999999999999887 444444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.72 E-value=6.7e-05 Score=60.72 Aligned_cols=91 Identities=14% Similarity=0.027 Sum_probs=74.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPEN------HGALVL 490 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 490 (655)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 456677788888889999998888875 3333 57788899999999999999999999999999988 777888
Q ss_pred HHHHHHhcCCchhHHHHHH
Q 035659 491 LSNIYAKTGKWDNVSELRK 509 (655)
Q Consensus 491 l~~~~~~~g~~~~a~~~~~ 509 (655)
++.++...|++++|.+.++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 8888888888887765443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00015 Score=57.70 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=60.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+...|..+...+...|++++|+..++++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788999999999999999999999999999999999999999999999999999999987653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.63 E-value=8.4e-05 Score=74.35 Aligned_cols=151 Identities=12% Similarity=-0.002 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHS 396 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 396 (655)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888899999999999999998653221111 1112233333332221 13567777788888
Q ss_pred CcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHH-HHhcCCHHHHHH
Q 035659 397 GLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGA-CKIHENVELAEY 472 (655)
Q Consensus 397 g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~ 472 (655)
|++++|+..++...+. .| +...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888753 34 4677888888899999999999999886 45554 3455555544 344567788888
Q ss_pred HHHHHhccCCCCc
Q 035659 473 ACSHLLELEPENH 485 (655)
Q Consensus 473 ~~~~~~~~~p~~~ 485 (655)
.+.++++..|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999998888654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00026 Score=54.73 Aligned_cols=81 Identities=27% Similarity=0.321 Sum_probs=64.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 419 VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 419 ~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
...+..+...+.+.|++++|...+++. ...| +..+|..+...+...|++++|...++++++.+|.+...+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445667777788888888888888775 2223 56788888888999999999999999999999999888888888877
Q ss_pred hcC
Q 035659 497 KTG 499 (655)
Q Consensus 497 ~~g 499 (655)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00027 Score=73.90 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
...|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5788899999999999999999999999999999999999999999999999999999998874
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00023 Score=58.14 Aligned_cols=78 Identities=15% Similarity=0.067 Sum_probs=64.6
Q ss_pred HHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 437 EAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 437 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+|++.|++. ...| +...|..+...+...|++++|+..++++++.+|.+...|..++.+|...|++++|...++...+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3334 46788888899999999999999999999999999999999999999999999999999887663
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00038 Score=72.83 Aligned_cols=124 Identities=7% Similarity=-0.030 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHC-----CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C--CCCchhhHHHHHHHHHhc
Q 035659 264 EALSIFHELQLS-----KNVNPD-EFTFVSVLSACAQLGAMDIGVQIHAKMKKQ-----G--IKLNCYLTTSLIDMYTKC 330 (655)
Q Consensus 264 ~A~~l~~~m~~~-----~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g--~~~~~~~~~~li~~~~~~ 330 (655)
+|+.++++.... |.-.|+ ..+++.+..+|...|++++|..+++++++. | .+....+++.|...|...
T Consensus 327 eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~ 406 (490)
T 3n71_A 327 EVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHA 406 (490)
T ss_dssp HHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC
Confidence 666666554432 112233 447888888888889999998888877652 2 122345667777777777
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 331 GNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 331 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
|++++|+.+++ +|+++++.......+-...+...+-.++...+.+++|+..|..+.
T Consensus 407 G~~~eA~~~~~------------------------~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 407 GHIEVGHGMIC------------------------KAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp TCHHHHHHHHH------------------------HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH------------------------HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777655 333444333322111112233344445556666677766666665
Q ss_pred h
Q 035659 411 P 411 (655)
Q Consensus 411 ~ 411 (655)
+
T Consensus 463 ~ 463 (490)
T 3n71_A 463 E 463 (490)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00044 Score=69.94 Aligned_cols=113 Identities=14% Similarity=0.061 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHH
Q 035659 383 AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP-GASVWGALLGAC 461 (655)
Q Consensus 383 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~ 461 (655)
...+..+...+.+.|++++|...|++..+.. ++. ......+++.+ ..| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 4456667777778888888888887776421 110 00011111111 122 357888999999
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 462 KIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 462 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.+.|++++|+..++++++++|.+..+|..++.+|...|++++|.+.+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00011 Score=63.14 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=65.3
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCC----------HHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 430 GRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHEN----------VELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
.|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|+.++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4555666666666654 2233 45566666666665554 5699999999999999999999999999998
Q ss_pred cC-----------CchhHHHHHHHHHhC
Q 035659 498 TG-----------KWDNVSELRKHMRVS 514 (655)
Q Consensus 498 ~g-----------~~~~a~~~~~~m~~~ 514 (655)
.| ++++|.+.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999998874
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0011 Score=51.68 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=60.0
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 449 PGASVWGALLGACKIHEN---VELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 449 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
+|+..|..+..++...++ .++|..+++++++.+|+++.+...++..+...|++++|...|+.+.+..-
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467788888888765555 69999999999999999999999999999999999999999999988643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0007 Score=54.47 Aligned_cols=65 Identities=9% Similarity=-0.050 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+...|..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56778889999999999999999999999999999999999999999999999999999998774
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00057 Score=70.33 Aligned_cols=115 Identities=12% Similarity=0.081 Sum_probs=80.4
Q ss_pred HHHHhcCCHHHHHHHHHhC---------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----CCCC---cchH
Q 035659 427 DMLGRAGLLDEAVEFIEKM---------PIVPG-ASVWGALLGACKIHENVELAEYACSHLLEL-----EPEN---HGAL 488 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~ 488 (655)
..+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++. +|++ ...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345566777777666553 11122 357778888888888888888888888763 4444 3567
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 035659 489 VLLSNIYAKTGKWDNVSELRKHMRVSGLKKEPGCSSIEVNGEIHKFLAGESSHPLCKEIYSKLDEIVARLK 559 (655)
Q Consensus 489 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~ 559 (655)
+.|+.+|..+|++++|..++++..+--.. .=+..||...+++..+.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999998877652110 013468998888888888887776
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0021 Score=54.42 Aligned_cols=64 Identities=9% Similarity=-0.032 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCchhHHHHHHHHHhCC
Q 035659 450 GASVWGALLGACKI----HENVELAEYACSHLLELEPENHGALVLLSNIYAK----TGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 450 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 515 (655)
+...+..|...|.. .+++++|...++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 33444444444444 44555555555555544 234455555555555 555555555555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0016 Score=50.05 Aligned_cols=64 Identities=28% Similarity=0.296 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
...|..+...+...|++++|+..++++++..|.+...+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5678888899999999999999999999999999999999999999999999999999988764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00041 Score=59.58 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=44.1
Q ss_pred HHHHHHHHhC-CCCCC-hhHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 035659 436 DEAVEFIEKM-PIVPG-ASVWGALLGACKIH-----------ENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502 (655)
Q Consensus 436 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 502 (655)
++|+..|++. .+.|+ ...|..+..+|... |++++|+..|+++++++|++...... +. ..+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a-l~------~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS-LE------MTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-HH------HHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH-HH------HHH
Confidence 4555555554 33343 44566666666554 58999999999999999987432222 22 234
Q ss_pred hHHHHHHHHHhCC
Q 035659 503 NVSELRKHMRVSG 515 (655)
Q Consensus 503 ~a~~~~~~m~~~g 515 (655)
+|.+++-.+...+
T Consensus 136 ka~el~~~~~~~~ 148 (158)
T 1zu2_A 136 KAPQLHAEAYKQG 148 (158)
T ss_dssp THHHHHHHHHHSS
T ss_pred hCHhccCcccccc
Confidence 5555555554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0079 Score=64.36 Aligned_cols=148 Identities=13% Similarity=0.028 Sum_probs=116.7
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCc----------HHHHHHHHHHcchhcCccCCcchHHHHHHHHH
Q 035659 362 GCGREALDLFSRMQEAKVKPN-AVTFTNVLCACSHSGL----------VDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLG 430 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 430 (655)
...++|++.++++... .|+ ...|+.--.++.+.|+ ++++++.++.+.+. ..-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3456889999999984 454 4456555555556666 89999999999864 2234567777777888
Q ss_pred hcC--CHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcC-CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc-------
Q 035659 431 RAG--LLDEAVEFIEKM-PIV-PGASVWGALLGACKIHE-NVELAEYACSHLLELEPENHGALVLLSNIYAKT------- 498 (655)
Q Consensus 431 ~~g--~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 498 (655)
+.| ++++|+++++++ ... .|...|+.-...+...| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 899 789999999998 222 36789999888888889 899999999999999999999999999998874
Q ss_pred -------CCchhHHHHHHHHHh
Q 035659 499 -------GKWDNVSELRKHMRV 513 (655)
Q Consensus 499 -------g~~~~a~~~~~~m~~ 513 (655)
++++++.+.++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 456788887776654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0031 Score=53.38 Aligned_cols=112 Identities=9% Similarity=-0.056 Sum_probs=90.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHh----cCCHHH
Q 035659 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGR----AGLLDE 437 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~ 437 (655)
++.++|+++|++..+.| .|+.. +...|...+.+++|.++|+...+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 34443 555677778888999999998764 456778888888888 889999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCC
Q 035659 438 AVEFIEKMPIVPGASVWGALLGACKI----HENVELAEYACSHLLELEP 482 (655)
Q Consensus 438 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 482 (655)
|.++|++.-..-++..+..|...|.. .++.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987323477888888888888 8999999999999998864
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.075 Score=43.24 Aligned_cols=141 Identities=13% Similarity=0.102 Sum_probs=105.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 437 (655)
+.-.|..++..++..+...+. +..-|+-+|.-....-+-+-..++++.+-+.+.+. .+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 345678888888888887643 55566666666566666677777777775543332 4566666
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 035659 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517 (655)
Q Consensus 438 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 517 (655)
....+-.++ .+..-...-+......|+-+.-.++...++...+.++.....++++|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666654 244555677788889999999999999987777888999999999999999999999999999999975
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0026 Score=51.64 Aligned_cols=79 Identities=11% Similarity=-0.017 Sum_probs=51.7
Q ss_pred HHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 035659 402 GRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 402 a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
+...|+...+ ..| +...+..+...|.+.|++++|+..+++. ...| +...|..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555543 223 3556666667777777777777777664 2223 35677777778888888888888888888
Q ss_pred ccCCC
Q 035659 479 ELEPE 483 (655)
Q Consensus 479 ~~~p~ 483 (655)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0041 Score=63.80 Aligned_cols=92 Identities=12% Similarity=-0.036 Sum_probs=61.1
Q ss_pred cCcHHHHHHHHHHcchhc--CccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-hhHHHHHHH
Q 035659 396 SGLVDEGRMFFNQMEPVY--GVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM---------PIVPG-ASVWGALLG 459 (655)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~--~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~ 459 (655)
.|++++|+.++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456677776666654421 12222 356777777777888888877777664 23444 357788888
Q ss_pred HHHhcCCHHHHHHHHHHHhcc-----CCCCcch
Q 035659 460 ACKIHENVELAEYACSHLLEL-----EPENHGA 487 (655)
Q Consensus 460 ~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~ 487 (655)
.|...|++++|+.+++++++. +|+++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 888888888888888888773 5665543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0072 Score=62.10 Aligned_cols=100 Identities=11% Similarity=-0.062 Sum_probs=69.4
Q ss_pred HHHHHccCcHHHHHHHHHHcchhcC--ccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-hhH
Q 035659 390 LCACSHSGLVDEGRMFFNQMEPVYG--VVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM---------PIVPG-ASV 453 (655)
Q Consensus 390 l~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 453 (655)
+..+...|++++|+.++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3345566777777777776654311 2222 356777788888888888888877765 33444 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCcchHH
Q 035659 454 WGALLGACKIHENVELAEYACSHLLE-----LEPENHGALV 489 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 489 (655)
++.|...|...|++++|+.+++++++ ++|+++.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88899999999999999999999887 3677665443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0018 Score=66.47 Aligned_cols=82 Identities=12% Similarity=-0.008 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----CCCC---cchHHHHHH
Q 035659 432 AGLLDEAVEFIEKM---------PIVPG-ASVWGALLGACKIHENVELAEYACSHLLEL-----EPEN---HGALVLLSN 493 (655)
Q Consensus 432 ~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~ 493 (655)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++. +|++ ..+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57888888888764 22344 468899999999999999999999999873 4554 457889999
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 035659 494 IYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 494 ~~~~~g~~~~a~~~~~~m~~ 513 (655)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.029 Score=55.27 Aligned_cols=137 Identities=10% Similarity=-0.029 Sum_probs=64.6
Q ss_pred CChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHc---cC-----cHHHHHHHHHHcch
Q 035659 346 RDVFVWSTMIAGFAM--YG---CGREALDLFSRMQEAKVKPNA-VTFTNVLCACSH---SG-----LVDEGRMFFNQMEP 411 (655)
Q Consensus 346 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~---~g-----~~~~a~~~~~~~~~ 411 (655)
.+...|...+.+... .+ ...+|..+|++..+ ..|+. ..+..+..++.. .+ ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355566665554332 22 24678888888887 45653 333333333320 00 00000111111100
Q ss_pred hcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 412 VYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 412 ~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
......+...|..+...+...|++++|...++++ ...|+...|..+...+...|++++|...+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0011233445555544455556666666666554 233555555555555556666666666666666666543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0095 Score=46.56 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-Chh-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 425 MVDMLGRAGLLDEAVEFIEKM-PIVP-GAS-VWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 425 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|+..++++++++|++..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677888888888888876 3334 456 788888889999999999999999999999887766
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0055 Score=47.99 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=54.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 035659 457 LLGACKIHENVELAEYACSHLLELEPENHG-ALVLLSNIYAKTGKWDNVSELRKHMRVSG 515 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 515 (655)
....+...|++++|...++++++.+|.+.. .+..++.+|...|++++|.+.++...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999988743
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.011 Score=46.60 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 348 VFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
...|..+...|.+.|++++|+..|++..+.. +-+...|..+..++...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444445555555555555555554432 1123344444445555555555555555444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.33 E-value=2.9e-05 Score=77.70 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=93.1
Q ss_pred hHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHH
Q 035659 88 LEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIK 167 (655)
Q Consensus 88 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 167 (655)
++.|.+.-++...|. .|..|-.+..+.++..+|++.|-+. -|+..|..++.++.+.|.++.-...+..+.+
T Consensus 41 ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 41 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp STTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred cHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 333333333343343 3777777777777777776665333 2556667777777777777776666665554
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHC-------------
Q 035659 168 SSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEME------------- 234 (655)
Q Consensus 168 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------- 234 (655)
. ..+..+=+.|+-+|+|.+++.+-++++ ..||+.--..+.+-|...|.++.|.-+|..+...
T Consensus 112 ~--~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 112 K--ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp T--CCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred H--hcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 4 334455566777777777765543332 2245555555555555555555555555443211
Q ss_pred -------CCCCCHhhHHHHHHHHhccCccccC
Q 035659 235 -------NVKPDEVTMVAVLSACAKKRDLEFG 259 (655)
Q Consensus 235 -------g~~p~~~t~~~ll~~~~~~~~~~~~ 259 (655)
.-.-+..||-.+..+|...+.+..+
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHH
Confidence 0124677898898899888887644
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.12 Score=57.98 Aligned_cols=130 Identities=12% Similarity=0.118 Sum_probs=82.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChH
Q 035659 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGR 365 (655)
Q Consensus 286 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 365 (655)
..++..+.+.|.++.|.++.+.- ..-.......|+++.|.++.+.+. +...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 56666677777777777655211 111344566789999988877664 4578888888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 366 EALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 366 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
.|.+.|.++.+ |..+...+...|+.+...++-+..... | -++.-...|.+.|++++|++++.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 99998888754 334444455566666554444433321 1 2334444556666666666666665
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.041 Score=46.57 Aligned_cols=65 Identities=8% Similarity=-0.040 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHHHHhccC-C-CCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 449 PGASVWGALLGACKIHE---NVELAEYACSHLLELE-P-ENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 449 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
++..+.-.+..++.+.+ +.++|+.+++.+++.+ | .+...++.|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 46666666667777766 5557777777777777 5 3466777777778888888888888777766
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.082 Score=52.07 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHHH--cc---CcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHH----hcC-------CHHHHHHH
Q 035659 379 VKPNAVTFTNVLCACS--HS---GLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLG----RAG-------LLDEAVEF 441 (655)
Q Consensus 379 ~~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~----~~g-------~~~~A~~~ 441 (655)
.+.+...|...+.+.. .. ....+|..+|++..+ +.|+ ...|..+.-+|. ..+ .+..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 4556777777776643 22 346889999999985 4676 334443333332 111 11223332
Q ss_pred HHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 442 IEKMP-IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 442 ~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
...+. ...+..+|..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 23332 234677888887778888999999999999999996 5678889999999999999999999887764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.094 Score=58.86 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=25.5
Q ss_pred HccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 035659 394 SHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446 (655)
Q Consensus 394 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 446 (655)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|++.|.+++
T Consensus 663 l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3445666665554333 233456666666666666666666666553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.051 Score=43.02 Aligned_cols=71 Identities=20% Similarity=0.107 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM-----P----IVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLL 491 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 491 (655)
-+..|...+.+.|+++.|..+|+.. + -.+...++..|..++.+.|+++.|...++++++++|.+..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 4445666666777777777776654 1 123467888999999999999999999999999999987765544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.34 Score=42.03 Aligned_cols=129 Identities=17% Similarity=0.160 Sum_probs=75.0
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 035659 325 DMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRM 404 (655)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 404 (655)
+...++|+++.|.++.+.+ .+...|..+.......|+.+-|.+.|.+..+ |..+.--|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3345567777777776665 3456777777777777777777777776654 3334444555566655544
Q ss_pred HHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035659 405 FFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHL 477 (655)
Q Consensus 405 ~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 477 (655)
+-+..... | -++.-...+.-.|+++++.+++.+.+.-|.. .-....+|..+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 43333221 1 2444455566677777777777776432221 11223456666676666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0047 Score=62.15 Aligned_cols=399 Identities=12% Similarity=0.044 Sum_probs=238.7
Q ss_pred ChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHH
Q 035659 69 DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKA 148 (655)
Q Consensus 69 ~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~ 148 (655)
.+.+|+.|-.++.+.+ ++.+|+.-|=+. .|+..|..+|.+..+.|.+++-+..+.-. ++. .-++..=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~--~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~Ma-Rk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKG--MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMA-RKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSS--SCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTT-STT--CCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccC--chHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHH-HHH--hcccccHHHHHHH
Confidence 5678999999999888 899988876544 46667889999999999999988877655 443 2344555688899
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC------------------------CC
Q 035659 149 AARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK------------------------KD 204 (655)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------------------------~~ 204 (655)
|++.+++.+.++++. .|+..-...+.+-+...|.++.|.-+|..+.. .+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999998776544432 46666667788888889999999888887752 37
Q ss_pred eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHH
Q 035659 205 VVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT 284 (655)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t 284 (655)
+.+|-.+-.+|...+.+.-|.-.--.++- .......++..|-..|.++ +-+.+++.-... -......
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~------ELIsLlEaglgl--ErAHmGm 265 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFE------ELITMLEAALGL--ERAHMGM 265 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCT------TSTTTHHHHTTS--TTCCHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHH------HHHHHHHHHhCC--CchhHHH
Confidence 78999999999999999887654433332 1122334566677788866 777787776532 3566778
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH-HcCCC------CchhhHHHHHHHHHhcCCHHHHHHHH-------------hhcC
Q 035659 285 FVSVLSACAQLGAMDIGVQIHAKMK-KQGIK------LNCYLTTSLIDMYTKCGNLDKALEVF-------------HTVK 344 (655)
Q Consensus 285 ~~~ll~~~~~~g~~~~a~~~~~~~~-~~g~~------~~~~~~~~li~~~~~~g~~~~A~~~~-------------~~~~ 344 (655)
|+-|.-.|++-. +++..+-++..- +.+++ -....|.-++-.|.+-.+++.|.... .++.
T Consensus 266 FTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii 344 (624)
T 3lvg_A 266 FTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 344 (624)
T ss_dssp HHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTG
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHH
Confidence 888877777753 233222222111 11222 13457888999999999999874431 1111
Q ss_pred C--CChhHHHHHHHHHHH---------------cCChHHHHHHHHHHHHcC-CC--------CCHHHHHHH-HHHHHccC
Q 035659 345 S--RDVFVWSTMIAGFAM---------------YGCGREALDLFSRMQEAK-VK--------PNAVTFTNV-LCACSHSG 397 (655)
Q Consensus 345 ~--~~~~~~~~li~~~~~---------------~g~~~~A~~~~~~m~~~g-~~--------p~~~t~~~l-l~a~~~~g 397 (655)
. .|+..|-..|.-|.+ .=+...+.++|++.-... ++ -|....|.. -..+....
T Consensus 345 ~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEE 424 (624)
T 3lvg_A 345 TKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEE 424 (624)
T ss_dssp GGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTT
T ss_pred HHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 1 244444444444433 333344444444321100 11 122222222 22234444
Q ss_pred cHHHHHHHHH------------HcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 035659 398 LVDEGRMFFN------------QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHE 465 (655)
Q Consensus 398 ~~~~a~~~~~------------~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 465 (655)
+++.-+.-.+ ++.+ .+-.+.-..-...|.+.++++++.++.++=..-.|. +...+..|
T Consensus 425 Dy~~LR~SId~ydNFD~i~LA~rLEk----HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDA------ietAa~S~ 494 (624)
T 3lvg_A 425 DYQALRTSIDAYDNFDNISLAQRLEK----HELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDA------MQYASESK 494 (624)
T ss_dssp CCHHHHHTTSSCCCSCTTHHHHHHHT----CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGG------GTTTTTCC
T ss_pred hHHHHHHHHHHhccccHHHHHHHHhh----CchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHH------HHHHHHcC
Confidence 4332221111 1100 011112223344567777888777766553322232 34456678
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHH
Q 035659 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
+.+.++++++-.++.+- ...|...+..|...=+.+-+.++
T Consensus 495 ~~elaeeLL~yFv~~g~--~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 495 DTELAEELLQWFLQEEK--RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CTTHHHHHHHHHHHHCS--THHHHHHHHHTSSSSSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc--hHHHHHHHHHHhhccChHHHHHH
Confidence 88888888888777653 35566666666666666655543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.039 Score=52.08 Aligned_cols=86 Identities=16% Similarity=0.209 Sum_probs=68.5
Q ss_pred HHHHHHHHHhC-CCCCC---hhHHHHHHHHHHh-----cCCHHHHHHHHHHHhccCCCC-cchHHHHHHHHHhc-CCchh
Q 035659 435 LDEAVEFIEKM-PIVPG---ASVWGALLGACKI-----HENVELAEYACSHLLELEPEN-HGALVLLSNIYAKT-GKWDN 503 (655)
Q Consensus 435 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 503 (655)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666664 45566 5688888888888 499999999999999999974 89999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCC
Q 035659 504 VSELRKHMRVSGLKKEP 520 (655)
Q Consensus 504 a~~~~~~m~~~g~~~~~ 520 (655)
+.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999886655334
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.089 Score=40.60 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=50.4
Q ss_pred CCcchHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 035659 417 PGVKHYTCMVDMLGRAGL---LDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPEN 484 (655)
Q Consensus 417 p~~~~y~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 484 (655)
.++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..|+++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 445666777777654444 67888888775 3344 46677777888889999999999999999998873
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.069 Score=45.20 Aligned_cols=71 Identities=18% Similarity=0.038 Sum_probs=44.8
Q ss_pred CcchHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 035659 418 GVKHYTCMVDMLGRAG---LLDEAVEFIEKM-PIV-P--GASVWGALLGACKIHENVELAEYACSHLLELEPENHGAL 488 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 488 (655)
+..+.-.+..++.+.+ +.++++.++++. ... | +...+..|.-++.+.|++++|.+.++++++.+|+|..+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344444444444444 333444444443 111 2 234566777888999999999999999999999876543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.25 E-value=2.9 Score=34.17 Aligned_cols=124 Identities=11% Similarity=0.039 Sum_probs=60.1
Q ss_pred HHHHHHH--HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----------------
Q 035659 285 FVSVLSA--CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS----------------- 345 (655)
Q Consensus 285 ~~~ll~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------- 345 (655)
...|+.| ..-.|.++++.++..+..+.. +..-||-+|--....-+-+...++++.+-+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~ 84 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECG 84 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHH
Confidence 3344444 345688899999998888743 333344443333333344444444444332
Q ss_pred ----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchh
Q 035659 346 ----RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 346 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
.+....+..+..+...|+-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++.+.
T Consensus 85 ~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 85 VINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 1222233344444445555555555544322 23444444445555555555555555555554443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.19 E-value=0.54 Score=38.18 Aligned_cols=87 Identities=17% Similarity=0.035 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--ChhHHHHHHHHHHhcCCHHHH
Q 035659 398 LVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE---AVEFIEKM-PIV-P--GASVWGALLGACKIHENVELA 470 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a 470 (655)
.+..+.+-|...... +. ++..+--.+..++.+.....+ ++.+++.. ... | .....-.|.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444443322 21 444444444445555544433 55555543 111 2 112233344445555555555
Q ss_pred HHHHHHHhccCCCCcc
Q 035659 471 EYACSHLLELEPENHG 486 (655)
Q Consensus 471 ~~~~~~~~~~~p~~~~ 486 (655)
.+.++.+++.+|.|..
T Consensus 94 ~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 5555555555555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.32 Score=38.28 Aligned_cols=65 Identities=17% Similarity=0.000 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------CCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELE-------PENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+..-+..+...+...|+++.|...++++++.. +.....+..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45566788899999999999999999998853 234567889999999999999999999988763
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=2.4 Score=40.06 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=60.0
Q ss_pred hcCCHHHHHHHHhhcCCCCh--hHHHHHHHH-HHHc--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 035659 329 KCGNLDKALEVFHTVKSRDV--FVWSTMIAG-FAMY--GC------GREALDLFSRMQEAKVKPN---AVTFTNVLCACS 394 (655)
Q Consensus 329 ~~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~ 394 (655)
+.|+..+-.+.+.++...++ ..|..++.+ +... |. ..+|...+++..+ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 34555555566666654443 356655543 3332 22 3455555555555 3454 345555555565
Q ss_pred cc-----CcHHHHHHHHHHcchhcCccCC--cchHHHHHHHHHhc-CCHHHHHHHHHhC
Q 035659 395 HS-----GLVDEGRMFFNQMEPVYGVVPG--VKHYTCMVDMLGRA-GLLDEAVEFIEKM 445 (655)
Q Consensus 395 ~~-----g~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~-g~~~~A~~~~~~m 445 (655)
.. |+.++|.++|++..+ +.|+ ..++....+.|++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 53 666666666666653 3442 45555555555553 6666666666553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.14 E-value=1.3 Score=48.37 Aligned_cols=54 Identities=15% Similarity=0.031 Sum_probs=50.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHH
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMR 512 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 512 (655)
.-|...|+++.|+++.+++...-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446778999999999999999999999999999999999999999999999875
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=15 Score=39.10 Aligned_cols=265 Identities=11% Similarity=0.047 Sum_probs=146.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC
Q 035659 175 FISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254 (655)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 254 (655)
..-+.-+..+.+.+++.....++.. +..+...--....+....|+..+|......+-..|- ........
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~--------- 141 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDK--------- 141 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHH---------
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHH---------
Confidence 3445556777788888888887766 333444444566777888998888887777765542 22333334
Q ss_pred ccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCH
Q 035659 255 DLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN-CYLTTSLIDMYTKCGNL 333 (655)
Q Consensus 255 ~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 333 (655)
+|....+.|.+.++. .+.- +......|+...|..+...+ +++ ......++..+.+-..+
T Consensus 142 -------------l~~~~~~~g~lt~~~-~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~p~~~ 201 (618)
T 1qsa_A 142 -------------LFSVWRASGKQDPLA-YLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANNPNTV 201 (618)
T ss_dssp -------------HHHHHHHTTCSCHHH-HHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHCGGGH
T ss_pred -------------HHHHHHHCCCCCHHH-HHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhChHhH
Confidence 444444444222221 2222 23334556666666664433 232 22344555555444333
Q ss_pred HHHHHHHhhcCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHccCcHHHHHHHH
Q 035659 334 DKALEVFHTVKSRDVF---VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTN----VLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 334 ~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~a~~~~g~~~~a~~~~ 406 (655)
. ...... .++.. .+...+.-+++. +.+.|..+|....... ..+...... +.......+...++...+
T Consensus 202 ~---~~~~~~-~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~ 275 (618)
T 1qsa_A 202 L---TFARTT-GATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWR 275 (618)
T ss_dssp H---HHHHHS-CCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHH
T ss_pred H---HHHhcc-CCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 3 232222 22211 122223334443 7799999999886543 223332222 222333445345666666
Q ss_pred HHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-ChhHH-HHHHHHHHhcCCHHHHHHHHHHHhc
Q 035659 407 NQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVP-GASVW-GALLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 407 ~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
...... .++.....-.+....+.|+++.|...|+.|+..+ +..-| --+..+....|+.++|..+|+++.+
T Consensus 276 ~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 276 DDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Hhcccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 654322 2333333444444557899999999999996432 22333 3345667788999999999999975
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.42 E-value=6.5 Score=34.00 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=92.7
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH
Q 035659 291 ACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370 (655)
Q Consensus 291 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (655)
.....|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|..... +..+.-.|.-.|+.++..++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHH
Confidence 345789999999997765 4577999999999999999999999998875 44555566677887776666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 035659 371 FSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP 446 (655)
Q Consensus 371 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 446 (655)
-+.....| -++.....+...|+++++.++|.+.-. -|. -.-.....|..+.|.++.++++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r----~~e------A~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS----LPL------AYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC----HHH------HHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC----hHH------HHHHHHHcCcHHHHHHHHHHhC
Confidence 55555544 144555566778999999999977632 221 1111223567788888888874
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.55 E-value=1.6 Score=35.48 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH---HHHHHHHcchhcCccC--CcchHHHHHHHHHhcCCHH
Q 035659 362 GCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDE---GRMFFNQMEPVYGVVP--GVKHYTCMVDMLGRAGLLD 436 (655)
Q Consensus 362 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~y~~li~~~~~~g~~~ 436 (655)
.....+.+-|.+....|. |+..+-..+..++.++..... ++.+++.+.+. + .| ...-.-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334455555665555443 566666667777777775554 88888877653 2 23 2233344556778888888
Q ss_pred HHHHHHHhC-CCCCCh
Q 035659 437 EAVEFIEKM-PIVPGA 451 (655)
Q Consensus 437 ~A~~~~~~m-~~~p~~ 451 (655)
+|.+.++.+ .++|+.
T Consensus 92 ~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 888888776 455653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.39 E-value=6.7 Score=32.39 Aligned_cols=65 Identities=8% Similarity=-0.053 Sum_probs=37.7
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 449 PGASVWGALLGACKIHEN---VELAEYACSHLLELEPE-NHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 449 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
|+..+--.+..++.+..+ ..+++.+++.+.+.+|. .....+.|+-++.+.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444443 34566666666666553 334455666677777777777777766665
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=89.25 E-value=25 Score=37.38 Aligned_cols=414 Identities=10% Similarity=-0.051 Sum_probs=215.1
Q ss_pred HHHHHHHHHhC-CCCChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcC
Q 035659 55 KQIHTQMLRTG-LFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133 (655)
Q Consensus 55 ~~~~~~~~~~g-~~~~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 133 (655)
.++-..+.+.. .+....+-+.-+..+++.+ ++......+.. +..+...-.....+....|+..+|......+ ...
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~--~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l-W~~ 131 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARRE--DWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL-WLT 131 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT--CHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH-HSC
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCC--CHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH-HhC
Confidence 55666655542 2223344455566677777 88888887776 4334444455666777788877787777776 444
Q ss_pred CCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHH
Q 035659 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213 (655)
Q Consensus 134 ~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 213 (655)
|. ........++..+. +.|.-.+..++ .-+......|+...|..+...+..........++.
T Consensus 132 ~~-~~p~~c~~l~~~~~----------------~~g~lt~~~~~-~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~a 193 (618)
T 1qsa_A 132 GK-SQPNACDKLFSVWR----------------ASGKQDPLAYL-ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIIS 193 (618)
T ss_dssp SS-CCCTHHHHHHHHHH----------------HTTCSCHHHHH-HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHH----------------HCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 32 23334444444444 43422222222 23355566778888888877764222122233333
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHH--HHHHHHHH
Q 035659 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEF--TFVSVLSA 291 (655)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~--t~~~ll~~ 291 (655)
.+.. ...+...... +.|+...-..++.++.+..+-+ ++.|..+|........+.+... ....+...
T Consensus 194 l~~~---p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar~d----~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~ 261 (618)
T 1qsa_A 194 LANN---PNTVLTFART-----TGATDFTRQMAAVAFASVARQD----AENARLMIPSLAQAQQLNEDQIQELRDIVAWR 261 (618)
T ss_dssp HHHC---GGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHhC---hHhHHHHHhc-----cCCChhhHHHHHHHHHHHHhcC----HHHHHHHHHhhhhccCCCHHHHHHHHHHHHHH
Confidence 2222 2222222211 1233332222222222222212 4588888888865442322222 12222223
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHH
Q 035659 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD---VFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 368 (655)
....+...++...+....... .+.....-.+....+.|+++.|.+.|+.|.... ....-=+..++...|+.++|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~ 339 (618)
T 1qsa_A 262 LMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK 339 (618)
T ss_dssp SCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHH
Confidence 334443455556666554433 333333344444557799999999999998642 122223445677889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cc-----hHHHHHHHHHhcCCHHHHHHHH
Q 035659 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VK-----HYTCMVDMLGRAGLLDEAVEFI 442 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~-----~y~~li~~~~~~g~~~~A~~~~ 442 (655)
.+|+++... .+|-.++.+ .+.|..-. + ......+. .. .-..-+..+...|...+|...+
T Consensus 340 ~~~~~~a~~------~~fYg~lAa-~~Lg~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew 404 (618)
T 1qsa_A 340 EILHQLMQQ------RGFYPMVAA-QRIGEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEW 404 (618)
T ss_dssp HHHHHHHTS------CSHHHHHHH-HHTTCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcC------CChHHHHHH-HHcCCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHH
Confidence 999998752 245444432 23332100 0 00001111 00 1123345677899999998877
Q ss_pred HhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccC
Q 035659 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEP---ENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLKKE 519 (655)
Q Consensus 443 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 519 (655)
..+.-..+......+.......|..+.+.....+....+. .-+..|..++.-+++.-.++...-.--...|.++.+.
T Consensus 405 ~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 405 ANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 6652223444444555556678888888766654433220 1123466666666666666655433233445666554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.04 E-value=5.3 Score=43.51 Aligned_cols=127 Identities=12% Similarity=0.072 Sum_probs=77.2
Q ss_pred HHHHHHhCCC-hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHC------CCCCCC-H
Q 035659 211 MISGFVQGGF-FEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLS------KNVNPD-E 282 (655)
Q Consensus 211 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~------~~~~p~-~ 282 (655)
++..+...++ .+.|+++|+++.+....-+......++..+...++-+ -+|.+++.+..+. . .++. .
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~E-----v~av~ll~~~l~~~~~~~~~-l~~~~~ 327 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKE-----LDMITILNETLDPLLSLLND-LPPRDA 327 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGH-----HHHHHHHHHHHHHHHHHHHT-CSSCCH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHhhhhhhh-hccccc
Confidence 3333444555 4678888888776532222222233333333333322 2555555554321 1 1221 1
Q ss_pred H-----HH-HHHH----HHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 035659 283 F-----TF-VSVL----SACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVK 344 (655)
Q Consensus 283 ~-----t~-~~ll----~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 344 (655)
. .+ ..|+ .-|...|+++.|.++-++.+..- +.+-.+|..|...|.+.|+++.|+-.++.++
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 00 1122 33667899999999999998864 5567899999999999999999999999886
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.78 E-value=2.5 Score=35.31 Aligned_cols=55 Identities=13% Similarity=-0.022 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 433 GLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 433 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
++.++|.++|+.+ .+... ..+|-....--.++|+...|.+++.+++.+.|.....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 5566666666555 11001 5566666666678899999999999999888765443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.45 E-value=26 Score=39.05 Aligned_cols=257 Identities=11% Similarity=0.025 Sum_probs=136.6
Q ss_pred HhcCCHHHHHHHHhhcCCC----C--eeHHHHHHHHHHhCCChhHHHHHHHHHHHCCC--C-----CCHhhHHHHHHHHh
Q 035659 185 AICGDLAMAYCVFVMIGKK----D--VVSWNSMISGFVQGGFFEKAIELYREMEMENV--K-----PDEVTMVAVLSACA 251 (655)
Q Consensus 185 ~~~g~~~~A~~~f~~~~~~----~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~t~~~ll~~~~ 251 (655)
...|+.++++.+++..... + +..=..+.-|.+..|..++++.++.......- . +....-..+.-+..
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 3456666677777655431 1 12223445556667777788887777654321 1 11111222222333
Q ss_pred ccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHH--H
Q 035659 252 KKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFV--SVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDM--Y 327 (655)
Q Consensus 252 ~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~ 327 (655)
-.|.- -+++.+.+..+.... .+...... ++...+...|+-+....++..+.+.. +..+...+.-+ +
T Consensus 465 ~~GS~-----~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGl 534 (963)
T 4ady_A 465 AMGSA-----NIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLAL 534 (963)
T ss_dssp STTCC-----CHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHH
T ss_pred hcCCC-----CHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHh
Confidence 33332 237788888877543 11111122 23333556788888888888877632 22333333333 3
Q ss_pred HhcCCHHHHHHHHhhcCC-CCh-hHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 035659 328 TKCGNLDKALEVFHTVKS-RDV-FVWS---TMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEG 402 (655)
Q Consensus 328 ~~~g~~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 402 (655)
.-.|+.+.+..+.+.+.. .|. .-|. ++.-+|+..|+.....+++..+... ...+......+.-++...|..+.+
T Consensus 535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHH
Confidence 466787777777776652 332 2333 3344677788877677788888764 222333332233344456666666
Q ss_pred HHHHHHcchhcCccCCcchHHHHHHHHHhcCCH-HHHHHHHHhCCCCCChhHH
Q 035659 403 RMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLL-DEAVEFIEKMPIVPGASVW 454 (655)
Q Consensus 403 ~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~-~~A~~~~~~m~~~p~~~~~ 454 (655)
.++++.+.+. ..|.+.--..+.-+....|.. .+|.+++..+...+|..+-
T Consensus 614 ~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 614 PRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp HHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 7777666542 244444444444444445443 5677788777444454433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.88 E-value=1.6 Score=43.89 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh-----CCCccCCc
Q 035659 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV-----SGLKKEPG 521 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 521 (655)
...++..+...|+++++...++.++..+|-+...|..++.+|.+.|+..+|.+.|+...+ .|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445667778889999999999999999999988999999999999999999999887654 47776654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.82 E-value=3.9 Score=34.14 Aligned_cols=105 Identities=16% Similarity=0.214 Sum_probs=57.0
Q ss_pred CCeeHHHHHHHHHHhCCCh------hHHHHHHHHHHHCCCCCCHh----hHHHHHHHHh---ccCccccCCChHHHHHHH
Q 035659 203 KDVVSWNSMISGFVQGGFF------EKAIELYREMEMENVKPDEV----TMVAVLSACA---KKRDLEFGRWPNEALSIF 269 (655)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~---~~~~~~~~~~~~~A~~l~ 269 (655)
.|..+|-..+.-.-+.|++ ++..++|++.... ++|+.. .|.-+.--|+ ..++ +++|.++|
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D------~d~aR~vy 83 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQE------PDDARDYF 83 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHC------GGGCHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcC------HHHHHHHH
Confidence 4666777777777777777 6777777766653 444321 1111111111 1133 33666667
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 035659 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLN 316 (655)
Q Consensus 270 ~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 316 (655)
+.+...+ -.- ...|.....--.+.|++..|++++...+..+..|.
T Consensus 84 ~~a~~~h-KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 84 QMARANC-KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHHHC-TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHHh-HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 6665432 222 34444444444567777777777777777664443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.71 E-value=2.3 Score=36.25 Aligned_cols=112 Identities=11% Similarity=0.023 Sum_probs=57.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHcchhcCccCCc-------chHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCChhH
Q 035659 388 NVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV-------KHYTCMVDMLGRAGLLDEAVEFIEKM-------PIVPGASV 453 (655)
Q Consensus 388 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~ 453 (655)
.-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++. +-.++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~-- 102 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV-- 102 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc--
Confidence 33445566667777666666554432333332 24455566666666666666666552 101111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 454 WGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 454 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
..++. . ...... -..+ +.+...-+-++.+|.+.|++++|+.+++.+..
T Consensus 103 ~~~~~-~---~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 103 RPSTG-N---SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccc-c---cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00000 0 000000 0001 22334566789999999999999999886543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.56 E-value=28 Score=35.44 Aligned_cols=184 Identities=11% Similarity=0.082 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCchh--hHHHHHHHHHhcCC--
Q 035659 262 PNEALSIFHELQLS----KNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKK-QGIKLNCY--LTTSLIDMYTKCGN-- 332 (655)
Q Consensus 262 ~~~A~~l~~~m~~~----~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~~~~~--~~~~li~~~~~~g~-- 332 (655)
+++|++.+..+.+. +...........++..|...++++...+.+..+.+ +|..+... ..+.+++.......
T Consensus 32 ~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d 111 (445)
T 4b4t_P 32 CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLD 111 (445)
T ss_dssp HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchh
Confidence 56777776665532 22445567788889999999999988887766654 33322221 12222333322332
Q ss_pred HHHHHHHHhhcCCC--C--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHccC
Q 035659 333 LDKALEVFHTVKSR--D--------VFVWSTMIAGFAMYGCGREALDLFSRMQEA--KVKPN---AVTFTNVLCACSHSG 397 (655)
Q Consensus 333 ~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~~~g 397 (655)
.+.-..+.+.+... + ......|...|-..|++.+|..++.++... |.... ...+...+..|...+
T Consensus 112 ~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~ 191 (445)
T 4b4t_P 112 LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKG 191 (445)
T ss_dssp HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCC
Confidence 23333444433321 1 123456778888899999999999988643 22222 234555667788899
Q ss_pred cHHHHHHHHHHcchhc-CccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 035659 398 LVDEGRMFFNQMEPVY-GVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM 445 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~-~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m 445 (655)
++.+|..++..+.... ...+. ...|.+++..+...+++.+|.+.|.+.
T Consensus 192 d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 192 DYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999988874321 11222 345677788888888998888777664
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.53 E-value=13 Score=28.36 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
..++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+...-||++.|-++-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56777777777776653 33333334556778999999999999999999999988755 467888888888888877
Q ss_pred cCCCCCHHHHHH
Q 035659 377 AKVKPNAVTFTN 388 (655)
Q Consensus 377 ~g~~p~~~t~~~ 388 (655)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 455555543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.96 E-value=14 Score=28.26 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQE 376 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (655)
..++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+...-||++.|-++-.. +.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 56777777777776653 333333345567789999999999999999999999887554 67888888888878877
Q ss_pred cCCCCCHHHHHH
Q 035659 377 AKVKPNAVTFTN 388 (655)
Q Consensus 377 ~g~~p~~~t~~~ 388 (655)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 75 455555543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.55 E-value=30 Score=34.36 Aligned_cols=25 Identities=8% Similarity=-0.106 Sum_probs=12.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Q 035659 284 TFVSVLSACAQLGAMDIGVQIHAKM 308 (655)
Q Consensus 284 t~~~ll~~~~~~g~~~~a~~~~~~~ 308 (655)
....+...|.+.|+.++..+++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555555555555554443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.50 E-value=39 Score=32.53 Aligned_cols=166 Identities=11% Similarity=0.092 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHcc
Q 035659 321 TSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLF----SRMQEAKVKPNAVTFTNVLCACSHS 396 (655)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~ 396 (655)
.++..=|.+.+++++|.+++.. -...+.++|+...|.++- +-..+.++++|......++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3444457788888888887543 233455667666555544 4445667888887777777766554
Q ss_pred CcHH-HHHHHHHHcch---hcC--ccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHH
Q 035659 397 GLVD-EGRMFFNQMEP---VYG--VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALLGACKIHENVELA 470 (655)
Q Consensus 397 g~~~-~a~~~~~~~~~---~~~--~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 470 (655)
..-+ .=..+.+.+.+ +.| -.-|+.....+...|.+.|++.+|+..|- .+..+.+..+..++.-+...+.
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~---- 182 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE---- 182 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC----
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC----
Confidence 4211 01122222221 112 23356677788899999999999998884 3433334566666655544433
Q ss_pred HHHHHHHhccCCCCcchHHH-HHHHHHhcCCchhHHHHHHHHHh
Q 035659 471 EYACSHLLELEPENHGALVL-LSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 471 ~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
|.....|.. .+--|...++...|..+++...+
T Consensus 183 -----------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -----------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222222322 23346678889999888777654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=81.24 E-value=74 Score=35.52 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=7.5
Q ss_pred ccCCHHHHHHHHHHHHH
Q 035659 294 QLGAMDIGVQIHAKMKK 310 (655)
Q Consensus 294 ~~g~~~~a~~~~~~~~~ 310 (655)
..|+.+.+..+.+.+..
T Consensus 536 ~~g~~e~~~~li~~L~~ 552 (963)
T 4ady_A 536 NYGRQELADDLITKMLA 552 (963)
T ss_dssp TTTCGGGGHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHh
Confidence 34444444444444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.06 E-value=7.5 Score=29.85 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 363 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
+.-+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 34466677777777788999999999999999999999999999998765 3344556777764
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.06 E-value=15 Score=27.99 Aligned_cols=80 Identities=10% Similarity=-0.032 Sum_probs=62.0
Q ss_pred cCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHH
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 231 (655)
....++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.+.|-+|-.. +.|..+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3457888888888887763 444444455677889999999999999999999999888764 667778888777777
Q ss_pred HHCC
Q 035659 232 EMEN 235 (655)
Q Consensus 232 ~~~g 235 (655)
..+|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 7665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.50 E-value=27 Score=40.48 Aligned_cols=65 Identities=11% Similarity=-0.120 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc-----hHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 035659 453 VWGALLGACKIHENVELAEYACSHLLELEPENHG-----ALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517 (655)
Q Consensus 453 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 517 (655)
-|.-++..+.+++.++.+.++.+.+++..+++.. .|..+.+.+...|++++|...+-.+.....+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 4566777888889999999998888876533322 5677788888999999999888877765443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.12 E-value=15 Score=28.04 Aligned_cols=80 Identities=10% Similarity=-0.105 Sum_probs=63.0
Q ss_pred cCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHH
Q 035659 152 LVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREM 231 (655)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 231 (655)
....++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.+.|-+|-. .+.|..+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3457888888888887763 44444445567788999999999999999999999988866 4788888888888788
Q ss_pred HHCC
Q 035659 232 EMEN 235 (655)
Q Consensus 232 ~~~g 235 (655)
..+|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 7765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 655 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 5e-06
Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 8/182 (4%)
Query: 323 LIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIA-GFAMYGCGR--EALDLFSRMQEAKV 379
L ++ + D+A+ + S Y G A+D + R E +
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAV 439
+ N+ A G V E +N + + ++ G ++EAV
Sbjct: 269 H-FPDAYCNLANALKEKGSVAEAEDCYNTA--LRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 440 EFIEK-MPIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497
K + + P A+ L + ++ A + + P A + N +
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Query: 498 TG 499
Sbjct: 386 MQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 34/188 (18%), Positives = 65/188 (34%), Gaps = 14/188 (7%)
Query: 323 LIDMYTKCGNLDKALEVFH---TVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379
L ++ G + A+ F T+ + + + A+ + R
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233
Query: 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQ---MEPVYGVVPGVKHYTCMVDMLGRAGLLD 436
+AV N+ C GL+D + + ++P + Y + + L G +
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-----PDAYCNLANALKEKGSVA 288
Query: 437 EAVEFIEK-MPIVPGASVWGALLGACKIH-ENVELAEYACSHLLELEPENHGALVLLSNI 494
EA + + + P + L K N+E A LE+ PE A L+++
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348
Query: 495 YAKTGKWD 502
+ GK
Sbjct: 349 LQQQGKLQ 356
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 22/302 (7%)
Query: 217 QGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSK 276
Q G FE A ++ + PD ++ +LS+ + R + +
Sbjct: 11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQC----RRL-DRSAHFSTLAI--- 60
Query: 277 NVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKA 336
NP S L + H + + +L G+++ A
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 337 LEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP--NAVTFTNVLCACS 394
++ + + + ++ + + + +A AV ++N+ C +
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 395 HSGLVDEGRMFFN---QMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMP--IVP 449
G + F ++P + + Y + ++L A + D AV +
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNF-----LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235
Query: 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRK 509
A V G L ++LA +EL+P A L+N + G +
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 510 HM 511
Sbjct: 296 TA 297
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (83), Expect = 0.002
Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 4/84 (4%)
Query: 421 HYTCMVDMLGRAGLLDEAVEF----IEKMPIVPGASVWGALLGACKIHENVELAEYACSH 476
Y + + + + + K L + E A
Sbjct: 38 EYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 97
Query: 477 LLELEPENHGALVLLSNIYAKTGK 500
LL+ EP+N+ A L I K
Sbjct: 98 LLQTEPQNNQAKELERLIDKAMKK 121
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 655 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.99 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.95 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.89 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.81 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.75 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.66 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.41 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.4 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.36 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.32 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.25 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.23 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.2 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.19 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.13 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.13 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.0 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.0 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.94 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.88 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.82 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.81 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.78 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.74 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.73 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.72 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.65 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.5 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.47 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.37 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.36 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.3 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.29 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.21 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.07 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.77 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.68 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.57 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.49 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.01 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.92 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.42 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.47 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.39 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.19 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.8 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.32 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.34 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=6.4e-20 Score=186.64 Aligned_cols=372 Identities=14% Similarity=0.104 Sum_probs=288.3
Q ss_pred HHHHhCCCcHHHHHHHHHhhhcCCCCC-CcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 035659 111 RAYSSSAEPIQSFMIFLQLVYNSPYFP-NEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGD 189 (655)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 189 (655)
..+.+.|++++|++.|++++.. .| +...+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|+
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4456678888888888887433 24 45566777777888888888888888888875 4567788888888888999
Q ss_pred HHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHH
Q 035659 190 LAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEAL 266 (655)
Q Consensus 190 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~ 266 (655)
+++|...+....+ .+...+..........+....+............. ...............+... .+.
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~ 155 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLE------EAK 155 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHH------HHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhh------hhH
Confidence 9999888877654 34444555555556666666666666555544333 2333333444444444433 666
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-
Q 035659 267 SIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS- 345 (655)
Q Consensus 267 ~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 345 (655)
..+.+..... +-+...+..+...+...|+++.|...+...++.. +.+...+..+...|...|++++|...|+....
T Consensus 156 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 156 ACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhhccC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 6676666542 4456677888888899999999999999988865 45677888999999999999999999987653
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchH
Q 035659 346 --RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHY 422 (655)
Q Consensus 346 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y 422 (655)
.+...|..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|.+.++..... ...+...+
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 308 (388)
T d1w3ba_ 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSL 308 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhh
Confidence 46677888899999999999999999999884 44 4677888888999999999999999988753 34456788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 035659 423 TCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGK 500 (655)
Q Consensus 423 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 500 (655)
..+...|.+.|++++|++.+++. ...|+ ..+|..+...+...|++++|+..++++++++|+++.+|..|+.+|.+.|+
T Consensus 309 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999999999885 55665 67888899999999999999999999999999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5.2e-19 Score=179.78 Aligned_cols=353 Identities=15% Similarity=0.084 Sum_probs=289.0
Q ss_pred HHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChh
Q 035659 146 IKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFE 222 (655)
Q Consensus 146 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 222 (655)
...+.+.|++++|.+.++.+++.. +.+..++..+..+|.+.|++++|...|++..+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 345678899999999999999885 55688899999999999999999999998754 35678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 035659 223 KAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGV 302 (655)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 302 (655)
+|+..+....+.... +.................. .+........... .................+....+.
T Consensus 85 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDME------GAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSS------HHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred ccccccccccccccc-ccccccccccccccccccc------ccccccccccccc--cccccccccccccccccchhhhhH
Confidence 999999999876433 3333344444444444433 5555555444433 344455556666677888888888
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 035659 303 QIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKV 379 (655)
Q Consensus 303 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 379 (655)
..+....... +.+...+..+...+...|++++|...++...+ .+...|..+...+...|++++|+..|++....+
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 233 (388)
T d1w3ba_ 156 ACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-
Confidence 8888887764 45677888899999999999999999987643 466789999999999999999999999998864
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCChhHHHH
Q 035659 380 KPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM--PIVPGASVWGA 456 (655)
Q Consensus 380 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 456 (655)
..+...+..+...+.+.|++++|...|+++.+. .|+ ...+..+...|...|++++|.+.++.. ..+.+...+..
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 310 (388)
T d1w3ba_ 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhH
Confidence 345677778888999999999999999998753 444 678899999999999999999999886 23346788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 457 LLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 457 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998776
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=5.3e-13 Score=131.62 Aligned_cols=223 Identities=14% Similarity=0.043 Sum_probs=183.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh
Q 035659 288 VLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCG 364 (655)
Q Consensus 288 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 364 (655)
....+.+.|++++|...|+++++.. +-+...|..+..+|...|++++|...|++..+ .+...|..+...|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 4455788999999999999999875 45678899999999999999999999988653 4678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH
Q 035659 365 REALDLFSRMQEAKVKPNAVT----------------FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428 (655)
Q Consensus 365 ~~A~~~~~~m~~~g~~p~~~t----------------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~ 428 (655)
++|.+.+++.... .|+... ....+..+...+..+++...|....+.....++...+..+...
T Consensus 104 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 104 RQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp HHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999998773 232111 1112223445567888888888877543333456678889999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHH
Q 035659 429 LGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSE 506 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 506 (655)
+...|++++|+..+++. ...| +..+|..+...+...|++++|...++++++++|.++.++..++.+|.+.|++++|.+
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 261 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999986 3344 477899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 035659 507 LRKHMRV 513 (655)
Q Consensus 507 ~~~~m~~ 513 (655)
.+++..+
T Consensus 262 ~~~~al~ 268 (323)
T d1fcha_ 262 HFLEALN 268 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.8e-12 Score=126.30 Aligned_cols=251 Identities=13% Similarity=0.027 Sum_probs=195.8
Q ss_pred HHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 035659 245 AVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLI 324 (655)
Q Consensus 245 ~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 324 (655)
.....+.+.|+++ +|+..|+++.+.. +-+..+|..+..++...|+++.|...+.++++.. +-+...+..+.
T Consensus 24 ~~g~~~~~~g~~~------~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 94 (323)
T d1fcha_ 24 EEGLRRLQEGDLP------NAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALA 94 (323)
T ss_dssp HHHHHHHHTTCHH------HHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHcCCHH------HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccc
Confidence 3455677888866 9999999999854 4457789999999999999999999999999875 45678899999
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC--C----------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHH
Q 035659 325 DMYTKCGNLDKALEVFHTVKSR--D----------------VFVWSTMIAGFAMYGCGREALDLFSRMQEAKV-KPNAVT 385 (655)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~~~~~--~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t 385 (655)
..|...|++++|.+.++..... + .......+..+...+...+|.+.|.+...... .++...
T Consensus 95 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~ 174 (323)
T d1fcha_ 95 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 174 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred ccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999876421 1 11111223334556678889999988876432 235677
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHH
Q 035659 386 FTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACK 462 (655)
Q Consensus 386 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~ 462 (655)
+..+...+...|++++|...|+..... .|+ ...|..+...|.+.|++++|.+.|++. ...|+ ..+|..+..+|.
T Consensus 175 ~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 175 QCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 251 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 778888899999999999999998754 444 678889999999999999999999886 44454 678999999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcch-----------HHHHHHHHHhcCCchhHHHH
Q 035659 463 IHENVELAEYACSHLLELEPENHGA-----------LVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 463 ~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~~ 507 (655)
..|++++|+..|++++++.|++... +..+..++...|+.+.+...
T Consensus 252 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 252 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999998876543 44566677777777765443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=4e-08 Score=96.65 Aligned_cols=296 Identities=11% Similarity=0.009 Sum_probs=144.6
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----eeHHHHHHHHH
Q 035659 149 AARLVQFRVGQAIHGMVIKSSFEDD----LFISNSLIHFYAICGDLAMAYCVFVMIGK-----KD----VVSWNSMISGF 215 (655)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~ 215 (655)
+...|++++|.++++..++.....+ ...++.+...|...|++++|...|++..+ ++ ..++..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3445555555555555554421111 12344455556666666666666554422 11 12344455555
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHhc
Q 035659 216 VQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD-EFTFVSVLSACAQ 294 (655)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~ 294 (655)
...|++..+...+.+.. .+....... ..+. ...+..+...+..
T Consensus 102 ~~~~~~~~a~~~~~~al----------------------------------~~~~~~~~~--~~~~~~~~~~~la~~~~~ 145 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAF----------------------------------QLINEQHLE--QLPMHEFLVRIRAQLLWA 145 (366)
T ss_dssp HHTTCHHHHHHHHHHHH----------------------------------HHHHHTTCT--TSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------------------------------HHhHhcccc--hhhHHHHHHHHHHHHHHH
Confidence 66666666666554332 222211111 1111 2244445566677
Q ss_pred cCCHHHHHHHHHHHHHcCCC----CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH
Q 035659 295 LGAMDIGVQIHAKMKKQGIK----LNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDL 370 (655)
Q Consensus 295 ~g~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (655)
.|+++.+...+......... .....+..+...+...|+...+...+.... .+
T Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~------------------------~~ 201 (366)
T d1hz4a_ 146 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE------------------------NL 201 (366)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------------HH
T ss_pred hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH------------------------HH
Confidence 77777777777776653211 122233333444444455544444333211 00
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC--CcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 035659 371 FSRMQEAKVKPN--AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP--GVKHYTCMVDMLGRAGLLDEAVEFIEKM- 445 (655)
Q Consensus 371 ~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m- 445 (655)
+ ...+..+. ...+..+...+...|+.++|...+........-.+ ....+..+...|...|++++|...+++.
T Consensus 202 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 278 (366)
T d1hz4a_ 202 L---GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 278 (366)
T ss_dssp H---TTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H---HHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 00111111 11233334445566666666666666543211111 1223444566666677777776666553
Q ss_pred ------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---------cchHHHHHHHHHhcCCchhHHHH
Q 035659 446 ------PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPEN---------HGALVLLSNIYAKTGKWDNVSEL 507 (655)
Q Consensus 446 ------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~ 507 (655)
+..|+ ..+|..+...+...|++++|.+.+++++++.+.. ...+..+...+...++.+++.+-
T Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 279 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 22232 3456667777788888888888888877754221 12233455556666777776543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=3.7e-08 Score=96.85 Aligned_cols=259 Identities=13% Similarity=0.063 Sum_probs=190.2
Q ss_pred HHHHhccCccccCCChHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----C-CCc
Q 035659 247 LSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPD-----EFTFVSVLSACAQLGAMDIGVQIHAKMKKQG----I-KLN 316 (655)
Q Consensus 247 l~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g----~-~~~ 316 (655)
...+...|+++ +|++++++..... +.+ ...+..+..++...|++++|...+.++.+.. . ...
T Consensus 19 A~~~~~~g~~~------~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 19 AQVAINDGNPD------EAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHTTCHH------HHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHH------HHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 44566788866 9999999987743 222 2356677788999999999999999887632 1 112
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----C
Q 035659 317 CYLTTSLIDMYTKCGNLDKALEVFHTVKS-------R----DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVK----P 381 (655)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p 381 (655)
...+..+...|...|++..+...+..... + ....+..+...+...|+.+.+...+.+....... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 170 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence 34566777888999999999888876532 1 1235566778889999999999999988764222 2
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----C
Q 035659 382 NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-----VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-----G 450 (655)
Q Consensus 382 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~ 450 (655)
....+......+...+...++...+...........+ ...+..+...+...|++++|...+++. ...| .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 250 (366)
T d1hz4a_ 171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 250 (366)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence 2344555566677888999888888776543222111 234566677888999999999999886 2222 1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc------CCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLEL------EPENHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
...+..+...+...|++++|...+++++.. .|....++..++.+|...|++++|.+.+++..+
T Consensus 251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345667888899999999999999998753 255567889999999999999999999987655
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=8.6e-10 Score=108.68 Aligned_cols=224 Identities=9% Similarity=-0.052 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCchhhH-HHHHHHHHhcCCHHHHHHH
Q 035659 263 NEALSIFHELQLSKNVNPDEFTFVSVLSACAQLG--AMDIGVQIHAKMKKQGIKLNCYLT-TSLIDMYTKCGNLDKALEV 339 (655)
Q Consensus 263 ~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~ 339 (655)
++|+.++++..... +-+...+..+..++...+ +++++...+..+.+.. +.+...+ ......+...|..++|...
T Consensus 90 ~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 90 KAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHH
Confidence 38999999988753 445666777766666655 5899999999999875 3344444 4555778889999999999
Q ss_pred HhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCcc
Q 035659 340 FHTVKSR---DVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVV 416 (655)
Q Consensus 340 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 416 (655)
++...+. +..+|+.+...+.+.|++++|...+++.... .|+.. .+...+...+..+++...+...... ..
T Consensus 167 ~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~ 239 (334)
T d1dcea1 167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RA 239 (334)
T ss_dssp HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--Cc
Confidence 9988753 6778999999999999998887766655442 22222 2333345556677777777776542 33
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 035659 417 PGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494 (655)
Q Consensus 417 p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 494 (655)
++...+..+...+...|+.++|...+.+. +..|+ ..+|..+...+...|++++|...++++++++|.+...|..|...
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~ 319 (334)
T d1dcea1 240 EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 319 (334)
T ss_dssp CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence 44566777788888899999999998875 44453 57888899999999999999999999999999888888878776
Q ss_pred HH
Q 035659 495 YA 496 (655)
Q Consensus 495 ~~ 496 (655)
+.
T Consensus 320 ~~ 321 (334)
T d1dcea1 320 FL 321 (334)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.95 E-value=3.9e-08 Score=95.17 Aligned_cols=186 Identities=11% Similarity=0.034 Sum_probs=140.7
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---C-hhHHHHHHHHHHHcCChHHHHHHHH
Q 035659 297 AMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSR---D-VFVWSTMIAGFAMYGCGREALDLFS 372 (655)
Q Consensus 297 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~ 372 (655)
..+++..++++.++...+.+...|..++..+.+.|+++.|..+|+.+.+. + ...|...+....+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45788888888887655666778888888889999999999999887542 2 3468888888888999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CC
Q 035659 373 RMQEAKVKPNAVTFTNVLCA-CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM----PI 447 (655)
Q Consensus 373 ~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~ 447 (655)
++...+.. +...|...... +...|+.+.|..+|+.+.+. ...+...|...++.+.+.|++++|..+|++. +.
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 98875432 33334333332 34468889999999988864 2334667888888888999999999998875 33
Q ss_pred CCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 448 VPG--ASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 448 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
.|+ ...|...+.--..+|+.+.+..+.+++.+.-|...
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 333 45788888888888999999999988888777553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=7.5e-08 Score=90.36 Aligned_cols=222 Identities=10% Similarity=-0.036 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 035659 263 NEALSIFHELQLSKNVNPD--EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVF 340 (655)
Q Consensus 263 ~~A~~l~~~m~~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (655)
+.++.-+.+........++ ..++..+..++.+.|++++|.+.|.+.++.. +-++.+|+.+..+|.+.|++++|.+.|
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 4666667777654322221 3467777788999999999999999999875 567889999999999999999999999
Q ss_pred hhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC
Q 035659 341 HTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP 417 (655)
Q Consensus 341 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 417 (655)
+++.+ .+..+|..+...|...|++++|++.|++..+.. +.+......+..++.+.+..+....+...... ..+
T Consensus 95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 170 (259)
T d1xnfa_ 95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDK 170 (259)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCC
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cch
Confidence 98764 356789999999999999999999999998853 22344443444445555655555555554432 222
Q ss_pred CcchHHHHHHHHHhcCC----HHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 035659 418 GVKHYTCMVDMLGRAGL----LDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVL 490 (655)
Q Consensus 418 ~~~~y~~li~~~~~~g~----~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 490 (655)
+...++ ++..+..... .+.+...+... ...|+ ..+|..+...+...|++++|...++++++.+|++...|..
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 248 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 248 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHH
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 222222 2232222222 22222221111 11222 3467778899999999999999999999999988655543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=4.5e-08 Score=94.88 Aligned_cols=223 Identities=12% Similarity=0.163 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-CHHHHHHHHhhcC---CCChhHHHHHHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG-NLDKALEVFHTVK---SRDVFVWSTMIAG 357 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~ 357 (655)
...|+.+...+.+.+..++|.++++.+++.+ +-+...|+....++.+.| ++++|...++... ..+..+|+.+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 3456666677888899999999999999976 567788899999988876 5999999998875 3578899999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCC--
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGL-- 434 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~-- 434 (655)
+...|++++|++.++++.+.. +-+...|..+...+.+.|++++|++.++.+.+. .| +...|+.+..++.+.|.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccc
Confidence 999999999999999999853 236788999999999999999999999999854 55 46677777777777665
Q ss_pred ----HHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc--hHHHHHHHHHhc--CCchhH
Q 035659 435 ----LDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHG--ALVLLSNIYAKT--GKWDNV 504 (655)
Q Consensus 435 ----~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~a 504 (655)
+++|++.+.+. ...| +...|..+...+.. ...+++...++.+.++.|.... .+..++.+|... +..+.+
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 57888887765 3444 57788887776654 4468888999999888876543 445666776543 444455
Q ss_pred HHHHHH
Q 035659 505 SELRKH 510 (655)
Q Consensus 505 ~~~~~~ 510 (655)
...+++
T Consensus 277 ~~~~~k 282 (315)
T d2h6fa1 277 EDILNK 282 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=3.2e-07 Score=88.51 Aligned_cols=182 Identities=9% Similarity=0.009 Sum_probs=142.1
Q ss_pred CCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 035659 331 GNLDKALEVFHTVKS----RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 331 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 406 (655)
+..++|..+|++..+ .+...|...+..+...|+.++|..+|+++.+.........|...+..+.+.|+++.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 446788888887542 3566889899999999999999999999987543333457888899999999999999999
Q ss_pred HHcchhcCccCCcchHHHHHHH-HHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 407 NQMEPVYGVVPGVKHYTCMVDM-LGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 407 ~~~~~~~~~~p~~~~y~~li~~-~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
+.+.+. ...+...|...... +...|+.+.|..+|+.+ ....+...|...+......|+.+.|..+|+++++..|.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 998753 22234445444443 33468999999999987 22345789999999999999999999999999998765
Q ss_pred Ccc----hHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 484 NHG----ALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 484 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
++. .|...+..-...|+.+.+.++.+++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 443 5666677667889999999999988664
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=1.1e-07 Score=91.95 Aligned_cols=124 Identities=12% Similarity=0.041 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 035659 283 FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFA 359 (655)
Q Consensus 283 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 359 (655)
.+|..+...+.+.|++++|.+.+..+++.. +.+..+|..+...|.+.|++++|.+.|+.+.+ .+...|+.+...+.
T Consensus 113 ~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 113 QVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 191 (315)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHH
Confidence 344444444444444444444444444432 22334444444444444444444444444332 12333443333333
Q ss_pred HcCC------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcc
Q 035659 360 MYGC------GREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQME 410 (655)
Q Consensus 360 ~~g~------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 410 (655)
..+. .++|++.+.+..+. .| |...|..+...+...| .+++.+.++...
T Consensus 192 ~~~~~~~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~ 246 (315)
T d2h6fa1 192 NTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLL 246 (315)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHH
T ss_pred HccccchhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHH
Confidence 3332 34556666655553 23 3444444433333322 344555555444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=4.1e-08 Score=92.22 Aligned_cols=211 Identities=11% Similarity=-0.021 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHcCC-CC--chhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 035659 298 MDIGVQIHAKMKKQGI-KL--NCYLTTSLIDMYTKCGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLF 371 (655)
Q Consensus 298 ~~~a~~~~~~~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 371 (655)
.+.+..-++++..... .+ ...++..+..+|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|++.|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 3445555556654321 11 345777889999999999999999998753 57889999999999999999999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 035659 372 SRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIV 448 (655)
Q Consensus 372 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~ 448 (655)
+++.+. .| +..++..+..++...|++++|...|+...+. .|+ ......+...+.+.+..+.+..+.... ...
T Consensus 95 ~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 95 DSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 999985 44 4567888888999999999999999998764 343 334444444555666555554444433 112
Q ss_pred CChhHHHHHHHHHH----hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 449 PGASVWGALLGACK----IHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 449 p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
++...+.. +..+. ..+..+.+...+.......|....+|..++..|...|++++|.+.++...+.
T Consensus 170 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 170 KEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp CCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 23323322 22222 1222344444444444455666678899999999999999999999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.66 E-value=4.1e-08 Score=96.25 Aligned_cols=241 Identities=10% Similarity=-0.019 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHCCCCCCCHH-HHHH---HHHHH-------hccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 035659 263 NEALSIFHELQLSKNVNPDEF-TFVS---VLSAC-------AQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCG 331 (655)
Q Consensus 263 ~~A~~l~~~m~~~~~~~p~~~-t~~~---ll~~~-------~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 331 (655)
++|++++.+.... .|+.. .|+. ++... ...|.+++|..+++.+.+.. +.+...|..+..++...+
T Consensus 46 ~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 46 ESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 4999999999874 46644 3432 22222 23345788999999988865 556777777777777765
Q ss_pred --CHHHHHHHHhhcCC---CChhHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 035659 332 --NLDKALEVFHTVKS---RDVFVWSTM-IAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMF 405 (655)
Q Consensus 332 --~~~~A~~~~~~~~~---~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 405 (655)
++++|...++.+.+ ++...|... ...+...+..++|+..++++..... -+...|..+...+...|++++|...
T Consensus 122 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 48999999988753 456666544 4566778999999999999988542 3577788888888889988887666
Q ss_pred HHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 406 FNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM--PIVPGASVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 406 ~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
+....+. .|+ ...+...+...+..+++...+.+. ...++...+..+...+...++.++|...+.+.++.+|.
T Consensus 201 ~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 201 GRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp CSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 6555432 222 122334456667777777777664 22334556677777888889999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 484 NHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 484 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+..++..++.+|...|++++|.+.++...+.
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998774
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=4.9e-06 Score=73.52 Aligned_cols=141 Identities=13% Similarity=-0.015 Sum_probs=97.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 035659 324 IDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGR 403 (655)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 403 (655)
...+...|+++.|.+.|.++..++...|..+...|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4456778899999999998888888888888888999999999999999888853 224667777888888889999988
Q ss_pred HHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 035659 404 MFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEP 482 (655)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 482 (655)
..|+..... ...+... .|...|. ..+.+ ..++..+..++...|++++|.+.+++++++.|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888877542 1111100 0000000 00111 23455666777888888888888888888777
Q ss_pred CC
Q 035659 483 EN 484 (655)
Q Consensus 483 ~~ 484 (655)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 54
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.40 E-value=6.8e-07 Score=79.93 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=51.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 420 KHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 420 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
..+......|.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++++|.+..+|..++.+|..
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~ 84 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33344445555555555555555543 2222 344555555556666666666666666666666665666666666666
Q ss_pred cCCchhHHHHHHHHHh
Q 035659 498 TGKWDNVSELRKHMRV 513 (655)
Q Consensus 498 ~g~~~~a~~~~~~m~~ 513 (655)
.|++++|...++...+
T Consensus 85 l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 85 MESYDEAIANLQRAYS 100 (201)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666665555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=9.9e-07 Score=71.06 Aligned_cols=88 Identities=9% Similarity=0.074 Sum_probs=58.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchh
Q 035659 426 VDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDN 503 (655)
Q Consensus 426 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 503 (655)
...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 34455666666666666664 2223 355666666777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHh
Q 035659 504 VSELRKHMRV 513 (655)
Q Consensus 504 a~~~~~~m~~ 513 (655)
|...++...+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777766655
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.36 E-value=2.5e-06 Score=81.18 Aligned_cols=187 Identities=11% Similarity=-0.015 Sum_probs=116.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CC--CHHHHHHH
Q 035659 324 IDMYTKCGNLDKALEVFHTVKS-----RD----VFVWSTMIAGFAMYGCGREALDLFSRMQEAKV---KP--NAVTFTNV 389 (655)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~l 389 (655)
...|...|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+.-. .+ ...++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 4456666666666666665432 11 24677777777788888888887776654210 11 13345555
Q ss_pred HHHHH-ccCcHHHHHHHHHHcchhcCccCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------h-hHHH
Q 035659 390 LCACS-HSGLVDEGRMFFNQMEPVYGVVPG----VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-------A-SVWG 455 (655)
Q Consensus 390 l~a~~-~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------~-~~~~ 455 (655)
...|. ..|++++|.+.++...+.+....+ ..+|..+...|...|++++|.+.|++. ...|+ . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 55564 468999999999887643221111 345778889999999999999999885 11111 1 2234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCcc-----hHHHHHHHHHh--cCCchhHHHHHHH
Q 035659 456 ALLGACKIHENVELAEYACSHLLELEPENHG-----ALVLLSNIYAK--TGKWDNVSELRKH 510 (655)
Q Consensus 456 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~ 510 (655)
..+..+...|+++.|...++++.+.+|.... ....++.++.. .+++++|...++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4555677889999999999999999875433 33445556554 3457777776643
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=2.1e-06 Score=69.01 Aligned_cols=105 Identities=16% Similarity=0.057 Sum_probs=85.8
Q ss_pred HHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcC
Q 035659 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHE 465 (655)
Q Consensus 389 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g 465 (655)
-...+...|++++|+.+|+...+. .| +...|..+..+|...|++++|+..+++. .+. .+...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 345677888889999888888753 34 4667888888899999999999988876 323 35788999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 466 NVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
++++|+..++++++.+|.++..+..+.++-+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999888877776543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=4.2e-06 Score=73.94 Aligned_cols=118 Identities=14% Similarity=0.001 Sum_probs=90.6
Q ss_pred HHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHH
Q 035659 392 ACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVEL 469 (655)
Q Consensus 392 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 469 (655)
.+...|++++|++.|..+. .|+..+|..+..+|...|++++|++.|++. .+.| +...|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 3566778888888877653 355667777888888888888888888775 3334 46788888888888899999
Q ss_pred HHHHHHHHhccCCCCc----------------chHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 470 AEYACSHLLELEPENH----------------GALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 470 a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
|...|+++++..|.+. .++..++.+|.+.|++++|.+.++...+.
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9888888887654432 35678899999999999999999877664
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=1.1e-06 Score=70.22 Aligned_cols=90 Identities=17% Similarity=0.042 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTG 499 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 499 (655)
+-.+...+.+.|++++|+..|++. ...| +..+|..+..++...|++++|+..++++++++|.+..++..++.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 345677788999999999999986 3445 57899999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHH
Q 035659 500 KWDNVSELRKHM 511 (655)
Q Consensus 500 ~~~~a~~~~~~m 511 (655)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.25 E-value=1.3e-06 Score=78.10 Aligned_cols=112 Identities=11% Similarity=-0.113 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHH
Q 035659 381 PNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGAL 457 (655)
Q Consensus 381 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 457 (655)
|+...+......+.+.|++++|+..|+.+.+. .| +...|..+..+|.+.|++++|+..|++. .+.|+ ...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 56666666677778888888888888877653 33 4667777888888888888888888775 55564 6678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 035659 458 LGACKIHENVELAEYACSHLLELEPENHGALVLLSNIY 495 (655)
Q Consensus 458 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 495 (655)
..++...|++++|...++++++++|.+...+...+..+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 88888888888888888888888776554444333333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=1.3e-05 Score=76.17 Aligned_cols=195 Identities=9% Similarity=-0.040 Sum_probs=136.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHH
Q 035659 288 VLSACAQLGAMDIGVQIHAKMKKQ----GIKL-NCYLTTSLIDMYTKCGNLDKALEVFHTVKS-----RD----VFVWST 353 (655)
Q Consensus 288 ll~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~ 353 (655)
....|...+++++|.+.|.++.+. +-++ ...+|..+..+|.+.|++++|.+.++...+ .+ ...+..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 355678889999999999988763 2112 246788899999999999999999887643 11 345666
Q ss_pred HHHHHHH-cCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCc-----chH
Q 035659 354 MIAGFAM-YGCGREALDLFSRMQEA----KVKPN-AVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGV-----KHY 422 (655)
Q Consensus 354 li~~~~~-~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~y 422 (655)
+...|.. .|++++|++.|++..+. +..+. ..++..+...+...|++++|..+|+.+.......+.. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 6667755 69999999999987642 21121 3457778888999999999999999987642212111 124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC------hhHHHHHHHHHHh--cCCHHHHHHHHHHHhccCC
Q 035659 423 TCMVDMLGRAGLLDEAVEFIEKM-PIVPG------ASVWGALLGACKI--HENVELAEYACSHLLELEP 482 (655)
Q Consensus 423 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p 482 (655)
...+..+...|+++.|...+++. .+.|+ ......++.++.. .+.+++|...|+++.+++|
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 45556677899999999999997 33332 2244566666655 2457888888887777765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=3.1e-06 Score=72.32 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=51.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH
Q 035659 427 DMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 504 (655)
..|.+.|++++|+..|++. ...| +...|..+...+...|++++|...++++++++|.+..+|..++.+|...|++++|
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA 97 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 97 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHH
Confidence 3455566666666666554 2222 3455566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHh
Q 035659 505 SELRKHMRV 513 (655)
Q Consensus 505 ~~~~~~m~~ 513 (655)
.+.+++...
T Consensus 98 ~~~~~~a~~ 106 (159)
T d1a17a_ 98 LRDYETVVK 106 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=7.4e-06 Score=69.89 Aligned_cols=116 Identities=9% Similarity=-0.005 Sum_probs=91.4
Q ss_pred HHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcC
Q 035659 389 VLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHE 465 (655)
Q Consensus 389 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 465 (655)
....|.+.|++++|...|+++.+. .| +...|..+...|...|++++|.+.|++. .+.|+ ..+|..+..++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 344677888888898888888754 34 4677888888999999999999998886 44454 578999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHH--HhcCCchhHHHH
Q 035659 466 NVELAEYACSHLLELEPENHGALVLLSNIY--AKTGKWDNVSEL 507 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 507 (655)
++++|...++++++++|.+...+..+..+. ...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999988887776554 334456666544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.2e-05 Score=69.38 Aligned_cols=133 Identities=14% Similarity=0.041 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDML 429 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 429 (655)
.+......+.+.|++++|+..|.+.+..- |....+ .+.-......+. ...|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~~------------~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF------------SNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC------------CSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcccc------------chHHHhhhchhH--------HHHHHHHHHHH
Confidence 44555667777788888888887776531 110000 000000000110 23567788889
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhH
Q 035659 430 GRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNV 504 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 504 (655)
.+.|++++|+..+++. .+.| ++..|..+..++...|++++|+..|+++++++|+++.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886 4445 6788999999999999999999999999999999999999888887766655544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=4.2e-06 Score=67.52 Aligned_cols=105 Identities=17% Similarity=0.014 Sum_probs=80.0
Q ss_pred HHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCh---hHHHHHH
Q 035659 387 TNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDMLGRAGL---LDEAVEFIEKM-PIVPGA---SVWGALL 458 (655)
Q Consensus 387 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~---~~~A~~~~~~m-~~~p~~---~~~~~ll 458 (655)
..+++.+...+++++|.+.|+...+. .| ++.++..+..++.+.++ +++|+.+++++ ...|+. .+|..|.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 35677778888888898888888753 34 45777778888876554 44688888885 334433 3788899
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNI 494 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 494 (655)
.+|...|++++|++.++++++++|++..+...+..+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 999999999999999999999999987766655443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.00 E-value=0.0017 Score=59.82 Aligned_cols=223 Identities=13% Similarity=-0.017 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhHHHHHHH
Q 035659 282 EFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK----CGNLDKALEVFHTVKSR-DVFVWSTMIA 356 (655)
Q Consensus 282 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~ 356 (655)
...+..+...+.+.++.++|.+.|++..+.| +...+..|..+|.. ..+...|...+...... +...+..+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccc
Confidence 3455566667778899999999999999876 45566668888876 56889999888887654 5556666665
Q ss_pred HHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH
Q 035659 357 GFAM----YGCGREALDLFSRMQEAKVKPNAVTFTNVLCACS----HSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428 (655)
Q Consensus 357 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~ 428 (655)
.+.. ....+.|...++...+.|.. .....+...+. .......+...+..... ..+...+..|...
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~ 151 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSL 151 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhh
Confidence 5554 45778899999998887632 22222222222 34567777777776544 2456677778777
Q ss_pred HHh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh---
Q 035659 429 LGR----AGLLDEAVEFIEKMPIVPGASVWGALLGACKI----HENVELAEYACSHLLELEPENHGALVLLSNIYAK--- 497 (655)
Q Consensus 429 ~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 497 (655)
|.. ..+...+..+++...-..+...+..|...+.. ..+++.|+..|+++.+.+ ++.++..|+.+|.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g 229 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEG 229 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSS
T ss_pred hccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCC
Confidence 775 45677778777765323467777777766665 578999999999998886 46788899999986
Q ss_pred -cCCchhHHHHHHHHHhCCC
Q 035659 498 -TGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 498 -~g~~~~a~~~~~~m~~~g~ 516 (655)
..+.++|.+.+++..+.|.
T Consensus 230 ~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 230 VTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp SSCCSTTHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHHHHHHHCcC
Confidence 4489999999999988774
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=4.9e-05 Score=65.36 Aligned_cols=63 Identities=13% Similarity=0.038 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.+|+.+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 467778888999999999999999999999999999999999999999999999999998774
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.94 E-value=7.7e-05 Score=62.77 Aligned_cols=63 Identities=17% Similarity=0.030 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.+|..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...++...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466778888899999999999999999999999999999999999999999999999887763
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.88 E-value=8.6e-05 Score=63.61 Aligned_cols=93 Identities=15% Similarity=0.054 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM-PIV-PGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKT 498 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 498 (655)
.|+.+..+|.+.|++++|+..+++. .+. .+...|..+..++...|++++|+..++++++++|++..+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5667788899999999999999886 333 35788999999999999999999999999999999999988888887776
Q ss_pred CCchh-HHHHHHHHHh
Q 035659 499 GKWDN-VSELRKHMRV 513 (655)
Q Consensus 499 g~~~~-a~~~~~~m~~ 513 (655)
+...+ ..+++..|-+
T Consensus 146 ~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 146 KEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHh
Confidence 65543 4455555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=5.7e-05 Score=64.84 Aligned_cols=131 Identities=11% Similarity=0.012 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccC-CcchHHHHHHH
Q 035659 350 VWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVP-GVKHYTCMVDM 428 (655)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~ 428 (655)
.+......+...|++++|++.|.++... ...........+. . .+.| ....|..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~------~----~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG------A----KLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH------G----GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH------H----HhChhhHHHHHHHHHH
Confidence 3445566677788888888888776541 0000000000000 0 1122 34567778889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 035659 429 LGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWD 502 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 502 (655)
|.+.|++++|+..+++. .+.|+ +..|..+..++...|++++|+..|+++++++|++..++..+..++.+.....
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886 55554 6789999999999999999999999999999999888888877765544333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.00011 Score=58.84 Aligned_cols=102 Identities=9% Similarity=-0.021 Sum_probs=78.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH---HHHHHHHhhcCCCC-----hhHHHHHHHH
Q 035659 286 VSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNL---DKALEVFHTVKSRD-----VFVWSTMIAG 357 (655)
Q Consensus 286 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~-----~~~~~~li~~ 357 (655)
..+++.+...+++++|++.|+..++.+ +.++.++..+..++.+.++. ++|+.+|+++...+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 467778888899999999999999976 56778888898888876554 46888888876532 2367778888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVL 390 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 390 (655)
|.+.|++++|++.|+++.+ +.|+......+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~ 112 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELE 112 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence 8899999999999999888 567655444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=4.4e-05 Score=62.07 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc-------hHHHHH
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHG-------ALVLLS 492 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 492 (655)
+-.+.+.|.+.|++++|++.|++. .+.| +..+|..+..+|.+.|++++|+..++++++++|.+.. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345677888999999999999876 3334 5788899999999999999999999999999887765 455677
Q ss_pred HHHHhcCCchhHHHHHHHHHh
Q 035659 493 NIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~m~~ 513 (655)
..+...+++++|.+.++....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888899999999877654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.78 E-value=0.017 Score=54.45 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=27.2
Q ss_pred CCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHH
Q 035659 137 PNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFV 216 (655)
Q Consensus 137 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 216 (655)
||..-...+..-|.+.|.++.|..++..+ .-|..++..|.+.+++..|.+++.+.. +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 44444444555555555555555555422 123444455555555555555544332 3334555555555
Q ss_pred hCCCh
Q 035659 217 QGGFF 221 (655)
Q Consensus 217 ~~g~~ 221 (655)
+....
T Consensus 81 ~~~e~ 85 (336)
T d1b89a_ 81 DGKEF 85 (336)
T ss_dssp HTTCH
T ss_pred hCcHH
Confidence 44433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.74 E-value=0.00011 Score=61.74 Aligned_cols=127 Identities=11% Similarity=-0.110 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHH
Q 035659 349 FVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDM 428 (655)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~ 428 (655)
..+......+.+.|++.+|+..|.+.... .|.... ..-......... ....+|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhh-----------hhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 45666677788888888888888887753 111000 000000000000 112367788889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 035659 429 LGRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYA 496 (655)
Q Consensus 429 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 496 (655)
|.+.|++++|++.+++. .+.| +..+|..+..++...|++++|+..|+++++++|.|..+...+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999886 4445 57899999999999999999999999999999999888776665543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.00012 Score=62.76 Aligned_cols=65 Identities=17% Similarity=0.080 Sum_probs=60.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 450 GASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 450 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
+...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|.+.++...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 35577888899999999999999999999999999999999999999999999999999998873
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.72 E-value=0.00033 Score=59.80 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.+|..+..++...|++++|+..++++++++|.+..+|..++.+|...|++++|.+.++...+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456677888999999999999999999999999999999999999999999999999998764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=6.8e-06 Score=84.61 Aligned_cols=220 Identities=9% Similarity=0.013 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHCCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch-hhHHHHHHHHHhcCCHHHHHHHHh
Q 035659 264 EALSIFHELQLSKNVNPDE-FTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNC-YLTTSLIDMYTKCGNLDKALEVFH 341 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 341 (655)
+|.+.|++... +.||. ..+..+..++...++++++ +++++..+ |+. ...+...... + ..+..+.+.++
T Consensus 4 eA~q~~~qA~~---l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~-~~y~~~ie~~r 73 (497)
T d1ya0a1 4 QSAQYLRQAEV---LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW-N-HAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHH---HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-H-HHTHHHHHHHH
T ss_pred HHHHHHHHHHH---cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH-H-HHHHHHHHHHH
Confidence 77788888765 44553 2444455555555555544 55655432 211 1111111111 1 11223344444
Q ss_pred hcCC----CChhHHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHcchhcC
Q 035659 342 TVKS----RDVFVWSTMIAGF--AMYGCGREALDLFSRMQEAKVKP-NAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYG 414 (655)
Q Consensus 342 ~~~~----~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 414 (655)
...+ ++..-......++ ...+.++.|+..+.+... +.| +...+..+...+.+.|+.++|...+......
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-- 149 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY-- 149 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHH--
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--
Confidence 3321 1221111111111 123344444444443332 233 3344555555666677777776665544321
Q ss_pred ccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 035659 415 VVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492 (655)
Q Consensus 415 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 492 (655)
.| ...+..+.+.+...|++++|...|++. .+.|+ ...|+.|...+...|+..+|...|.+++..+|+.+.++..|.
T Consensus 150 -~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~ 227 (497)
T d1ya0a1 150 -IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp -HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred -CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 11 235666777777777777777777775 34444 467777777777777777777777777777777777777777
Q ss_pred HHHHhcC
Q 035659 493 NIYAKTG 499 (655)
Q Consensus 493 ~~~~~~g 499 (655)
.++.+..
T Consensus 228 ~~~~~~~ 234 (497)
T d1ya0a1 228 KALSKAL 234 (497)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7665443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.68 E-value=0.0064 Score=55.65 Aligned_cols=108 Identities=12% Similarity=-0.037 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHH
Q 035659 264 EALSIFHELQLSKNVNPDEFTFVSVLSACAQ----LGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK----CGNLDK 335 (655)
Q Consensus 264 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~ 335 (655)
.+...+...... .+...+..+...+.. ..+...+...+....+.| +......|..+|.. ..+.++
T Consensus 128 ~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 128 KAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhh
Confidence 444555444332 233444444444432 234445555555555433 23333334444433 234455
Q ss_pred HHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcC
Q 035659 336 ALEVFHTVKS-RDVFVWSTMIAGFAM----YGCGREALDLFSRMQEAK 378 (655)
Q Consensus 336 A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 378 (655)
|...|+...+ .++..+..|...|.. ..+.++|.++|++..+.|
T Consensus 201 A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 201 ALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 5555444332 233334344333332 113444444444444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.65 E-value=0.00015 Score=62.62 Aligned_cols=126 Identities=7% Similarity=-0.041 Sum_probs=87.7
Q ss_pred CHHHHHHHH---HHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCChhHHHHHH
Q 035659 382 NAVTFTNVL---CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKMPIVPGASVWGALL 458 (655)
Q Consensus 382 ~~~t~~~ll---~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 458 (655)
|...|..+. ......|++++|.+.|......+.-.+-... ...........-++.. ....+..+.
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~~----~~~a~~~la 74 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVED----KVLAHTAKA 74 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHHH----HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHHH----HHHHHHHHH
Confidence 344444444 4577889999999999988764321110000 0000111111111111 245778889
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHh-----CCCccC
Q 035659 459 GACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRV-----SGLKKE 519 (655)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~ 519 (655)
..+...|++++|...++++++.+|.+...|..++.+|.+.|++++|.+.|+...+ .|+.|.
T Consensus 75 ~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 75 EAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999999999999999999999999998754 466543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.50 E-value=0.041 Score=51.63 Aligned_cols=136 Identities=8% Similarity=0.016 Sum_probs=81.0
Q ss_pred CCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHH
Q 035659 101 PNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSL 180 (655)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 180 (655)
+|..--..+..-|-+.|.++.|..+|..+ . -|..++..+.+.++++.|.++.... .+..+|..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~-~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~ 75 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-S---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 75 (336)
T ss_dssp C----------------CTTTHHHHHHHT-T---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC-C---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence 44444445566667888888888888877 2 2677778888888888776665432 356678888
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC
Q 035659 181 IHFYAICGDLAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKR 254 (655)
Q Consensus 181 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 254 (655)
...+.+......|..+ ......+......++..|-..|.+++.+.+++..... -.++...++.++..|++.+
T Consensus 76 ~~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 8888877766555332 1111223344457888888888888888888876533 2456667777888887754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.47 E-value=0.0002 Score=56.41 Aligned_cols=83 Identities=12% Similarity=-0.001 Sum_probs=44.9
Q ss_pred HHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCeeHHHHHHHHHHhCCChhHH
Q 035659 148 AAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGK---KDVVSWNSMISGFVQGGFFEKA 224 (655)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 224 (655)
.+.+.|++++|...++.+++.. +.+...|..+..+|.+.|++++|...|++..+ .+..+|..+...|...|++++|
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHH
Confidence 3445555555555555555553 33455555555555555555555555554432 2345555555555556666666
Q ss_pred HHHHHHH
Q 035659 225 IELYREM 231 (655)
Q Consensus 225 ~~~~~~m 231 (655)
++.|++.
T Consensus 104 ~~~l~~~ 110 (112)
T d1hxia_ 104 LASLRAW 110 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.37 E-value=0.00017 Score=59.84 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 035659 466 NVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGL 516 (655)
Q Consensus 466 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 516 (655)
+++.|.+.|+++++++|++...+..|... ..|.+++.+..+.|+
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred hHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 46889999999999999987666665544 466677777766664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=3.5e-05 Score=79.10 Aligned_cols=128 Identities=10% Similarity=-0.009 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 035659 330 CGNLDKALEVFHTVKS---RDVFVWSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFF 406 (655)
Q Consensus 330 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 406 (655)
.+.++.|...+..... .+...|..+...+.+.|+.++|...+++..... | ..++..+...+...|++++|...|
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 4556666665554432 344566666677777777777777766654421 1 345666666777777788888777
Q ss_pred HHcchhcCccCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCChhHHHHHHHHHHh
Q 035659 407 NQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PI-VPGASVWGALLGACKI 463 (655)
Q Consensus 407 ~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~ 463 (655)
++..+ +.|+ ...|+.|...|...|+..+|...|.+. .+ .|-..++..|...+.+
T Consensus 176 ~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 176 RHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 77764 3554 457777777777778887777777764 22 3456667776666543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.00044 Score=52.37 Aligned_cols=73 Identities=19% Similarity=0.071 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C----CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 035659 422 YTCMVDMLGRAGLLDEAVEFIEKM----P----IVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLS 492 (655)
Q Consensus 422 y~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 492 (655)
+-.+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345666677777777777777654 1 1222 467889999999999999999999999999999998887765
Q ss_pred HH
Q 035659 493 NI 494 (655)
Q Consensus 493 ~~ 494 (655)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.29 E-value=0.00045 Score=58.05 Aligned_cols=62 Identities=11% Similarity=-0.098 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-----------CcchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 035659 452 SVWGALLGACKIHENVELAEYACSHLLELEPE-----------NHGALVLLSNIYAKTGKWDNVSELRKHMRV 513 (655)
Q Consensus 452 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 513 (655)
..|+.+..++...|++++|...+++++++.|. ...+|..++.+|...|++++|.+.+++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888875321 123577899999999999999999998765
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.0014 Score=52.75 Aligned_cols=92 Identities=15% Similarity=0.078 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-----cchHHHHH
Q 035659 352 STMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-----VKHYTCMV 426 (655)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~li 426 (655)
..+...|.+.|++++|+..|++.++.+ +.+...+..+..++.+.|++++|...++.+.+...-.+. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344555666666666666666666642 224555666666666666666666666665532100111 12333444
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 035659 427 DMLGRAGLLDEAVEFIEK 444 (655)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~ 444 (655)
..+...+++++|++.|++
T Consensus 87 ~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 444455555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.07 E-value=0.00023 Score=59.03 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=57.2
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHh----------cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 035659 430 GRAGLLDEAVEFIEKM-PIVP-GASVWGALLGACKI----------HENVELAEYACSHLLELEPENHGALVLLSNIYAK 497 (655)
Q Consensus 430 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 497 (655)
-+.+.+++|++.|++. ...| ++.+|..+..++.. .+.+++|+..++++++++|+++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3444455555555554 2223 23444444444432 3456889999999999999999999999999988
Q ss_pred cCC-----------chhHHHHHHHHHh
Q 035659 498 TGK-----------WDNVSELRKHMRV 513 (655)
Q Consensus 498 ~g~-----------~~~a~~~~~~m~~ 513 (655)
.|+ +++|.+.|++..+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccc
Confidence 764 5777777777765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.02 E-value=0.0022 Score=53.57 Aligned_cols=63 Identities=16% Similarity=0.002 Sum_probs=41.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 035659 421 HYTCMVDMLGRAGLLDEAVEFIEKM--------PIVPG-----ASVWGALLGACKIHENVELAEYACSHLLELEPE 483 (655)
Q Consensus 421 ~y~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 483 (655)
.|+.+..+|...|++++|.+.+++. ...++ ...+..+..+|...|++++|+..|++++++.|.
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3555556666666666665555443 11222 225667788899999999999999999887543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.77 E-value=0.0092 Score=50.82 Aligned_cols=120 Identities=10% Similarity=0.076 Sum_probs=78.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 035659 289 LSACAQLGAMDIGVQIHAKMKKQ--GIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVFVWSTMIAGFAMYGCGRE 366 (655)
Q Consensus 289 l~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 366 (655)
.......|++++|.+.|...++. |...... ..+.+ +...-..+.......+..+...+...|++++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~----------~~~~w--~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDL----------RDFQF--VEPFATALVEDKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG----------TTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccccccC----------cchHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence 34567888899988888888774 2110000 00000 1111111122234567778888889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcch----hcCccCCcch
Q 035659 367 ALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEP----VYGVVPGVKH 421 (655)
Q Consensus 367 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 421 (655)
|+..++++.... +-+...|..++.++...|+.++|++.|+.+.+ ..|+.|...+
T Consensus 86 Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 86 VIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999988853 33677888889999999999999988888643 2477777544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.68 E-value=0.0012 Score=60.52 Aligned_cols=124 Identities=11% Similarity=-0.000 Sum_probs=72.3
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cchHHHHHHHHHhcCCHHHH
Q 035659 360 MYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKHYTCMVDMLGRAGLLDEA 438 (655)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A 438 (655)
+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.|+...+. .|+ ...+..+..++...+..+++
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHHH
Confidence 4577777777777777742 225566777777777777777777777777643 454 23333344444433333333
Q ss_pred HHHHHhC--CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 035659 439 VEFIEKM--PIVPG-ASVWGALLGACKIHENVELAEYACSHLLELEPENHGA 487 (655)
Q Consensus 439 ~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 487 (655)
..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 2222111 11222 2233334455677788888888888888887766544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.57 E-value=0.00055 Score=62.97 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=85.7
Q ss_pred HHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHH
Q 035659 393 CSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG-ASVWGALLGACKIHENVELA 470 (655)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 470 (655)
..+.|++++|+..+++..+. -..|...+..+...|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 34679999999999999863 2345789999999999999999999999987 45565 45555555555444444433
Q ss_pred HHHHHHHhcc-CCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 471 EYACSHLLEL-EPENHGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 471 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
.......... +|++...+...+..+...|+.++|.+.++...+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3222221112 3444556667788899999999999999988774
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.007 Score=45.35 Aligned_cols=64 Identities=19% Similarity=0.007 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------cchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 035659 451 ASVWGALLGACKIHENVELAEYACSHLLELEPEN-------HGALVLLSNIYAKTGKWDNVSELRKHMRVS 514 (655)
Q Consensus 451 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 514 (655)
...+-.+...+.+.|+++.|...+++++++.|.+ ..++..|+.+|.+.|++++|.+.+++..+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445578888999999999999999999875443 357889999999999999999999998874
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.01 E-value=0.21 Score=38.09 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=102.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHHHHHhcCCHHH
Q 035659 358 FAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVDMLGRAGLLDE 437 (655)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 437 (655)
+.-.|..++..+++.+...+. +..-|+.+|.-....-+-+-..+.++.+-+.+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 445678888888888887642 556666677666666677777778887765444433 344444
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 035659 438 AVEFIEKMPIVPGASVWGALLGACKIHENVELAEYACSHLLELEPENHGALVLLSNIYAKTGKWDNVSELRKHMRVSGLK 517 (655)
Q Consensus 438 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 517 (655)
....+-.+. .+..-.+.-++...++|+-+.-.++++.+++.+..++.....++++|.+.|...++-+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444444442 234445666778888999999999999988888778899999999999999999999999999999875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=1.8 Score=41.91 Aligned_cols=325 Identities=10% Similarity=0.042 Sum_probs=175.6
Q ss_pred HHHHhCCCcHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCC
Q 035659 111 RAYSSSAEPIQSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFED-DLFISNSLIHFYAICGD 189 (655)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~ 189 (655)
.-..+.|+..++..+...+ ... | -..|...-..-...++.. ..++...+.+..-.| ........+..+.+.++
T Consensus 14 ~~a~~~~~~~~~~~~~~~L-~dy---p-L~pYl~~~~l~~~~~~~~-~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGL-KDY---P-LYPYLEYRQITDDLMNQP-AVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGG-TTS---T-THHHHHHHHHHHTGGGCC-HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHhhh-cCC---C-CHHHHHHHHHHhccccCC-HHHHHHHHHHCCCChhHHHHHHHHHHHHHhccC
Confidence 3455678888877777666 321 2 233333322222323222 123333333321111 11223444667788888
Q ss_pred HHHHHHHHhhcCCCCeeHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHH
Q 035659 190 LAMAYCVFVMIGKKDVVSWNSMISGFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIF 269 (655)
Q Consensus 190 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~ 269 (655)
+......+..-+ .+...--....+..+.|+.++|...+..+-..|..- ++....+|
T Consensus 88 w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~-----------------------p~~c~~l~ 143 (450)
T d1qsaa1 88 WRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-----------------------PNACDKLF 143 (450)
T ss_dssp HHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC-----------------------CTHHHHHH
T ss_pred HHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------------------chHHHHHH
Confidence 887776554322 234434467777888999999988877776554211 12444456
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 035659 270 HELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRDVF 349 (655)
Q Consensus 270 ~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 349 (655)
..+...| .++...+-.-+......|+...|..+...+- ..........+..+.+-..+.... ... ..+..
T Consensus 144 ~~~~~~~--~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~----~~~~~~~~a~~~l~~~p~~~~~~~---~~~-~~~~~ 213 (450)
T d1qsaa1 144 SVWRASG--KQDPLAYLERIRLAMKAGNTGLVTVLAGQMP----ADYQTIASAIISLANNPNTVLTFA---RTT-GATDF 213 (450)
T ss_dssp HHHHHTT--CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC----GGGHHHHHHHHHHHHCGGGHHHHH---HHS-CCCHH
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCChhhHHHHHhhCC----hhHHHHHHHHHHHHhChHhHHHHH---hcC-CCChh
Confidence 6665554 2333333344445556678887777765431 122334455555554433333322 222 22333
Q ss_pred HHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHccCcHHHHHHHHHHcchhcCccCCcchHH
Q 035659 350 VWSTMIAGFAM--YGCGREALDLFSRMQEAKVKPNAVTFTNVL----CACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYT 423 (655)
Q Consensus 350 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll----~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~ 423 (655)
....+..++.+ ..+.+.|..++......... +......+- ......+..+.+...+...... ..+.....
T Consensus 214 ~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~ 289 (450)
T d1qsaa1 214 TRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIE 289 (450)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHH
T ss_pred hhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHH
Confidence 32333333333 34677888888877654322 222222222 2233456667777777666432 23444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCC-hhHH-HHHHHHHHhcCCHHHHHHHHHHHhc
Q 035659 424 CMVDMLGRAGLLDEAVEFIEKMPIVPG-ASVW-GALLGACKIHENVELAEYACSHLLE 479 (655)
Q Consensus 424 ~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 479 (655)
-.+....+.+++..+...++.|+..|. ..-| --+..++...|+.+.|...|..+..
T Consensus 290 w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 455556678899999999999854332 2233 4456778889999999999998864
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.42 E-value=1.2 Score=33.92 Aligned_cols=117 Identities=11% Similarity=0.023 Sum_probs=65.7
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---------------------CChhH
Q 035659 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKS---------------------RDVFV 350 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------------~~~~~ 350 (655)
+.-.|.++++.++..+..+.. +..-||.+|--....-+-+...++++.+-+ .+...
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~ 88 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH 88 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHH
Confidence 345678888988888887742 333344444333333444444444444332 12223
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchh
Q 035659 351 WSTMIAGFAMYGCGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPV 412 (655)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 412 (655)
.+..++.+.+.|+-++-.++++.+.+ +-+|++.....+..||.+.|...++-+++.++.+.
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 44445556666666666666666544 23556666666666666666666666666666554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.47 E-value=4.9 Score=38.63 Aligned_cols=373 Identities=10% Similarity=-0.039 Sum_probs=217.2
Q ss_pred HHHHHHHHHhCCCC-ChhhhhHHHHhhhcCCCCChHHHHHHhhcCCCCCcchHHHHHHHHHhCCCcHHHHHHHHHhhhcC
Q 035659 55 KQIHTQMLRTGLFF-DPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPIQSFMIFLQLVYNS 133 (655)
Q Consensus 55 ~~~~~~~~~~g~~~-~~~~~~~ll~~y~~~g~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 133 (655)
..+...+.+..-.| ...+-..-+..+++.+ ++......+...| .++..-.....+....|+..+|...+... ...
T Consensus 56 ~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~--~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~l-W~~ 131 (450)
T d1qsaa1 56 VTVTNFVRANPTLPPARTLQSRFVNELARRE--DWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKEL-WLT 131 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT--CHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHH-HSC
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhcc--CHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHH-Hhc
Confidence 44555554432211 1222333345566677 7877776665433 24444445667778888888888888777 443
Q ss_pred CCCCCcchHHHHHHHHHccCCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCeeHHHHHHH
Q 035659 134 PYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVIKSSFEDDLFISNSLIHFYAICGDLAMAYCVFVMIGKKDVVSWNSMIS 213 (655)
Q Consensus 134 ~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 213 (655)
|.. ..+....++..+.+.| ..+...+-.-+......|+...|..+...++.........++.
T Consensus 132 ~~~-----------------~p~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~ 193 (450)
T d1qsaa1 132 GKS-----------------QPNACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIIS 193 (450)
T ss_dssp SSC-----------------CCTHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred CCC-----------------CchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHH
Confidence 321 1233344555555555 4455555566677777899999999998887665555566665
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCccccCCChHHHHHHHHHHHHCCCCCCCHHH-HH-HHHHH
Q 035659 214 GFVQGGFFEKAIELYREMEMENVKPDEVTMVAVLSACAKKRDLEFGRWPNEALSIFHELQLSKNVNPDEFT-FV-SVLSA 291 (655)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~A~~l~~~m~~~~~~~p~~~t-~~-~ll~~ 291 (655)
......... ..... ..++......+..++.+....+ ++.|..++..........++... .. .+...
T Consensus 194 l~~~p~~~~---~~~~~-----~~~~~~~~~~~~~~l~rla~~d----~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 261 (450)
T d1qsaa1 194 LANNPNTVL---TFART-----TGATDFTRQMAAVAFASVARQD----AENARLMIPSLAQAQQLNEDQIQELRDIVAWR 261 (450)
T ss_dssp HHHCGGGHH---HHHHH-----SCCCHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHhChHhHH---HHHhc-----CCCChhhhHHHHHHHHHHhccC----hhHHHHHHHhhhhcccccHHHHHHHHHHHHHH
Confidence 554332222 22111 1233344444444444433323 55888888887665423333221 11 12222
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHH
Q 035659 292 CAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTKCGNLDKALEVFHTVKSRD---VFVWSTMIAGFAMYGCGREAL 368 (655)
Q Consensus 292 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 368 (655)
....+..+.+..........+ .+......++......+++..+...|..+.... ....-=+..++...|+.++|.
T Consensus 262 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~ 339 (450)
T d1qsaa1 262 LMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK 339 (450)
T ss_dssp SCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHH
Confidence 334566777877777776654 344444455556677899999999999987532 222234567888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCC-cch-----HHHHHHHHHhcCCHHHHHHHH
Q 035659 369 DLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPG-VKH-----YTCMVDMLGRAGLLDEAVEFI 442 (655)
Q Consensus 369 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~-----y~~li~~~~~~g~~~~A~~~~ 442 (655)
.+|..... .++ |-..+.+ .+.|..- .+... ...++ ... -..-+..+...|+..+|...+
T Consensus 340 ~~~~~~a~---~~~---fYG~LAa-~~Lg~~~-------~~~~~-~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~ 404 (450)
T d1qsaa1 340 EILHQLMQ---QRG---FYPMVAA-QRIGEEY-------ELKID-KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEW 404 (450)
T ss_dssp HHHHHHHT---SCS---HHHHHHH-HHTTCCC-------CCCCC-CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhc---CCC---hHHHHHH-HHcCCCC-------CCCcC-CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHH
Confidence 99998864 233 5555433 2222100 00000 11111 011 123356677899999999888
Q ss_pred HhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 035659 443 EKMPIVPGASVWGALLGACKIHENVELAEYACSHLL 478 (655)
Q Consensus 443 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 478 (655)
..+--..+......+.....+.|.++.|+....+..
T Consensus 405 ~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 405 ANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 766223466677778888899999999998887764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.39 E-value=0.45 Score=37.34 Aligned_cols=81 Identities=9% Similarity=-0.020 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCchhHH
Q 035659 434 LLDEAVEFIEKMPIVPGASVWGALLGACKI----HENVELAEYACSHLLELEPENHGALVLLSNIYAK----TGKWDNVS 505 (655)
Q Consensus 434 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~ 505 (655)
+.++|.+++++.-..-++.....|...|.. ..+.++|.+.|++..+.+ ++.+...|+.+|.. ..+.++|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHH
Confidence 344455554443111233333333333332 345677777777776654 34566677777765 34677777
Q ss_pred HHHHHHHhCCC
Q 035659 506 ELRKHMRVSGL 516 (655)
Q Consensus 506 ~~~~~m~~~g~ 516 (655)
+.+++..+.|.
T Consensus 116 ~~~~~Aa~~G~ 126 (133)
T d1klxa_ 116 KTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 77777776664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.19 E-value=1.9 Score=33.40 Aligned_cols=108 Identities=12% Similarity=-0.024 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHHH
Q 035659 262 PNEALSIFHELQLSKNVNPDEFTFVSVLSACAQLGAMDIGVQIHAKMKKQGIKLNCYLTTSLIDMYTK----CGNLDKAL 337 (655)
Q Consensus 262 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 337 (655)
.++|+++|++..+.+ .+. ....+. .....+.++|.+.+.+..+.| ++.....|..+|.. ..+.++|.
T Consensus 9 ~~~A~~~~~kaa~~g--~~~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 9 LKKAIQYYVKACELN--EMF--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHTT--CTT--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCC--Chh--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 347888888777665 222 222221 233456677777777777665 23344445555543 23455555
Q ss_pred HHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcC
Q 035659 338 EVFHTVKS-RDVFVWSTMIAGFAM----YGCGREALDLFSRMQEAK 378 (655)
Q Consensus 338 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 378 (655)
++|+...+ .++.+...|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 55555432 233334444333333 224444555554444433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.80 E-value=0.46 Score=36.48 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=26.0
Q ss_pred HHHHHHHHHhC-CCCC-C-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 035659 435 LDEAVEFIEKM-PIVP-G-ASVWGALLGACKIHENVELAEYACSHLLELEPENH 485 (655)
Q Consensus 435 ~~~A~~~~~~m-~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 485 (655)
+++|+.++++. ...| + ...|..|.-+|.+.|+++.|.+.++++++.+|.|.
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 34455555544 1122 2 13444555555566666666666666666666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.32 E-value=2.5 Score=32.23 Aligned_cols=50 Identities=6% Similarity=-0.040 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHcchhcCccC-C-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 035659 398 LVDEGRMFFNQMEPVYGVVP-G-VKHYTCMVDMLGRAGLLDEAVEFIEKM-PIVPG 450 (655)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~p-~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 450 (655)
++++|+.+++.+.+. .| + ...+-.|.-+|.+.|++++|.+.++.+ .+.|+
T Consensus 53 d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 53 DERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 344555555555432 12 1 123334444555555555555555554 33444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.34 E-value=4 Score=29.29 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHcchhcCccCCcchHHHHHH
Q 035659 363 CGREALDLFSRMQEAKVKPNAVTFTNVLCACSHSGLVDEGRMFFNQMEPVYGVVPGVKHYTCMVD 427 (655)
Q Consensus 363 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 427 (655)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 34466677777777788999999999999999999999999999988764 3344567776664
|