Citrus Sinensis ID: 035666

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MNYLAIMKSCHMCCFFSCLMLMMLTIIIFCNLGELSGISNKISHSFHEDKSSCTNRDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFCCA
Secondary Structure (PSIPRED)
ccHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEccccccccEEEEEEEEccccccccccEEEEcccccccEEEccccEEEEccccEEEEcccccccccEEEEEEccccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccEccccccccccccccEEEEEcccccccccEEEEEEEEccccccccccEEEEcccccccEEccHHHHHEcccccEEEccccccccccEEEEEEcccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
MNYLAIMKSCHMCCFFSCLMLMMLTIIIFCNlgelsgisnkishsfhedkssctnrdisisqskdstsgipQYIVQIVNTcvsgcapsdihlhcgwfasarvvnprtfkrvsyddclvnggmplrpsqvirftysnsfmypiafksakfcca
Flexible Loop (DISEMBL)
MNYLAIMKSCHMCCFFSCLMLMMLTIIIFCNLGELSGISNKISHSFHEDKSSCTNRDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFCCA
Low Complexity Region (SEG)
MNYLAIMKschmccffsclmlmmlTIIIFCNLGELSGISNKISHSFHEDKSSCTNRDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFCCA
Disordered region (IsUnstruct)
**YLAIMKSCHMCCFFSCLMLMMLTIIIFCNLGELSGISNK****************************IPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFCC*
Disordered Region (DISOPRED)
**Y****KSCHMCCFFSCLMLMMLTIIIFCNLG***************************SQS*DSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFCCA
Disordered Region (DISEMBL)
MNYLAIMKSCHMCCFFSCLMLMMLTIIIFCNLGELSGISNKISH***********RDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFCCA
Disordered Region (DISPRO)
MNYLAIMKSCHMCCFFSCLMLMMLTIIIFCNLGE****************SSCTNRDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFCCA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNYLAIMKSCHMCCFFSCLMLMMLTIIIFCNLGELSGISNKISHSFHEDKSSCTNRDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFCCA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
A8MS78	127	Uncharacterized protein A	no	no	0.644	0.771	0.314	0.0001

>sp|A8MS78|Y1583_ARATH Uncharacterized protein At1g05835 OS=Arabidopsis thaliana GN=At1g05835 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 10/108 (9%)

Query: 48  EDKSSCTNRDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRT 107
           E KSS    + ++ Q++       ++ V+++N C   C   ++ L C  F  + +V+P T
Sbjct: 27  EGKSS----EPAVRQTQVKWREGKKFRVEVMNKC-PMCPIINLRLKCQGFPQS-LVDP-T 79

Query: 108 FKRV---SYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFCCA 152
           F RV   S  +C+VN G+PL P Q + F YSN+  + +   S  F C 
Sbjct: 80  FLRVLSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFALRPLSWSFQCE 127

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
357448939	161	hypothetical protein MTR_2g034150 [Medic	0.894	0.844	0.616	9e-50
356556004	168	PREDICTED: uncharacterized protein LOC10	0.940	0.851	0.576	1e-46
356556438	168	PREDICTED: uncharacterized protein LOC10	0.940	0.851	0.570	2e-45
255637847	168	unknown [Glycine max]	0.940	0.851	0.564	3e-45
255556382	167	conserved hypothetical protein [Ricinus	0.927	0.844	0.602	7e-45
296083245	134	unnamed protein product [Vitis vinifera]	0.657	0.746	0.87	2e-41
357478979	202	DNA-directed RNA polymerase [Medicago tr	0.861	0.648	0.547	3e-41
294461965	178	unknown [Picea sitchensis]	0.644	0.550	0.744	3e-41
302815215	132	hypothetical protein SELMODRAFT_129580 [	0.651	0.75	0.71	1e-36
302798194	132	hypothetical protein SELMODRAFT_113463 [	0.657	0.757	0.702	1e-36

>gi|357448939|ref|XP_003594745.1| hypothetical protein MTR_2g034150 [Medicago truncatula] gi|124359953|gb|ABN07969.1| hypothetical protein MtrDRAFT_AC152185g23v2 [Medicago truncatula] gi|355483793|gb|AES64996.1| hypothetical protein MTR_2g034150 [Medicago truncatula]

 Score =  201 bits (510), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 98/159 (61%), Positives = 116/159 (72%), Gaps = 23/159 (14%)

Query: 15  FFSCLMLMMLTIIIFCNLGELSGISNKISHSFHEDKS----------------------- 51
           F+   + + + +I+FC+    SG S +I HSFHEDK+                       
Sbjct: 3   FYLFFLFITMPLIVFCDFEMPSGSSTQIFHSFHEDKNGSLTVSEKVEHAHYTPRKFWFHG 62

Query: 52  SCTNRDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRV 111
           SCT RDISISQSK STSGIPQYIVQIVNTCVSGCAP DIHLHCGWFASAR++NP+ FKR+
Sbjct: 63  SCTKRDISISQSKGSTSGIPQYIVQIVNTCVSGCAPYDIHLHCGWFASARIINPKLFKRL 122

Query: 112 SYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFC 150
           SYDDCLV+GG PL  +Q+IRFTYSNSFMYP+AFKSA+FC
Sbjct: 123 SYDDCLVHGGKPLTSNQIIRFTYSNSFMYPLAFKSARFC 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556004|ref|XP_003546317.1| PREDICTED: uncharacterized protein LOC100796799 [Glycine max]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/170 (57%), Positives = 117/170 (68%), Gaps = 27/170 (15%)

Query: 4   LAIMKSCHMCCFFSCLMLMMLTIIIFCNLGELSGISNKISHSFHEDKS------------ 51
           + I  SC +  F    +  M+ + +FC+ G  SG S +  HS HEDK+            
Sbjct: 3   MTITNSCPLIIF----LCFMMPLFVFCDEGTHSGPSTQSLHSSHEDKNGSITVSMKVEHA 58

Query: 52  -----------SCTNRDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASA 100
                      +CT++DISISQS+ ST GIPQ+IVQIVN CVSGCAPSDIHLHCG FASA
Sbjct: 59  HSASRKFWLHGTCTSKDISISQSQTSTPGIPQFIVQIVNNCVSGCAPSDIHLHCGMFASA 118

Query: 101 RVVNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFC 150
           R+VNPR FKR+SYDDCLVNGG PL PSQ+IRFTYSN+F YP+AFKSAKFC
Sbjct: 119 RMVNPRLFKRISYDDCLVNGGNPLAPSQIIRFTYSNTFSYPLAFKSAKFC 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556438|ref|XP_003546533.1| PREDICTED: uncharacterized protein LOC100778036 [Glycine max]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 116/170 (68%), Gaps = 27/170 (15%)

Query: 4   LAIMKSCHMCCFFSCLMLMMLTIIIFCNLGELSGISNKISHSFHEDKS------------ 51
           + I  SC +  F    +  M+ + +FC+ G  SG S +I HS HEDK+            
Sbjct: 3   MTITNSCPLIIF----LCFMMPLFVFCDEGTHSGPSTQILHSSHEDKNRSITVSMKVEHA 58

Query: 52  -----------SCTNRDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASA 100
                      +CT++DISISQS+ ST GIPQ+IVQIVN CVSGCAPSDIH HCG FASA
Sbjct: 59  HSASRKFWLHGTCTSKDISISQSQTSTPGIPQFIVQIVNNCVSGCAPSDIHFHCGMFASA 118

Query: 101 RVVNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFC 150
           R+VNPR FKR+S DDCLVNGG PL PSQ+IRFTYSN+F YP+AFKSAKFC
Sbjct: 119 RMVNPRLFKRISCDDCLVNGGNPLAPSQIIRFTYSNTFSYPLAFKSAKFC 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637847|gb|ACU19243.1| unknown [Glycine max]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 116/170 (68%), Gaps = 27/170 (15%)

Query: 4   LAIMKSCHMCCFFSCLMLMMLTIIIFCNLGELSGISNKISHSFHEDKS------------ 51
           + I  SC +  F    +  ++ + +FC+ G  SG S +  HS HEDK+            
Sbjct: 3   MTITNSCPLIIF----LCFVMPLFVFCDEGTHSGPSTQSLHSSHEDKNGSITVSMKVEHA 58

Query: 52  -----------SCTNRDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASA 100
                      +CT++DISISQS+  T GIPQ+IVQIVN CVSGCAPSDIHLHCG FASA
Sbjct: 59  HSASRKFWLHGTCTSKDISISQSQTFTPGIPQFIVQIVNNCVSGCAPSDIHLHCGMFASA 118

Query: 101 RVVNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFC 150
           R+VNPR FKR+SYDDCLVNGG PL PSQ+IRFTYSN+F YP+AFKSAKFC
Sbjct: 119 RMVNPRLFKRISYDDCLVNGGNPLAPSQIIRFTYSNTFSYPLAFKSAKFC 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556382|ref|XP_002519225.1| conserved hypothetical protein [Ricinus communis] gi|223541540|gb|EEF43089.1| conserved hypothetical protein [Ricinus communis]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 103/171 (60%), Positives = 119/171 (69%), Gaps = 30/171 (17%)

Query: 6   IMKSCHMCCFFSCLMLMMLTIIIFCNLGELSG-------------------ISNKISHSF 46
           +M  CH+C  +  LM+M+ T     NLG  SG                   ++ K  HS+
Sbjct: 1   MMSLCHICFLY--LMIMLATT--GWNLGIQSGTPDYEFFQSTDENNNQSRTVTKKPQHSY 56

Query: 47  --HEDK----SSCTNRDISISQSKDSTSGIPQYIVQIVNTC-VSGCAPSDIHLHCGWFAS 99
             H  K     SC+NRDISISQS+DSTSGIPQYIVQIVNTC VSGCAPSDIHLHCGWFAS
Sbjct: 57  SSHNRKLLVHGSCSNRDISISQSRDSTSGIPQYIVQIVNTCSVSGCAPSDIHLHCGWFAS 116

Query: 100 ARVVNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFC 150
           AR+VNP  FKR+SYDDCLVNGG  L+ SQ+IRFTYSNSFMY +AFK+AKFC
Sbjct: 117 ARMVNPTVFKRMSYDDCLVNGGKTLKNSQMIRFTYSNSFMYTLAFKTAKFC 167

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083245|emb|CBI22881.3| unnamed protein product [Vitis vinifera]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/100 (87%), Positives = 95/100 (95%)

Query: 51  SSCTNRDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKR 110
            +CTNRDISISQS+DS+SGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASAR+VNPR FKR
Sbjct: 35  GTCTNRDISISQSRDSSSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARIVNPRIFKR 94

Query: 111 VSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFC 150
           + YDDCLVNGG PL+ SQ+IRFTYSNSFMYP+AFKSAKFC
Sbjct: 95  LFYDDCLVNGGKPLKTSQIIRFTYSNSFMYPLAFKSAKFC 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478979|ref|XP_003609775.1| DNA-directed RNA polymerase [Medicago truncatula] gi|355510830|gb|AES91972.1| DNA-directed RNA polymerase [Medicago truncatula]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 111/159 (69%), Gaps = 28/159 (17%)

Query: 15  FFSCLMLMMLTIIIFCNLGELSGISNKISHSFHEDKS----------------------- 51
           FF C     +T +   N+   SG S +I HSF+ED++                       
Sbjct: 10  FFLCF----ITPLALSNVEIHSGPSTQILHSFNEDRNGSITLSVKAEHAHSTSTKFSWHG 65

Query: 52  SCTNRDISISQSKDSTSGIPQYIVQIVNTCVSG-CAPSDIHLHCGWFASARVVNPRTFKR 110
           SCTN+DISISQS+++ +GIP+Y+VQIVNTCVS  CAP +IHLHCGWFASAR++NP+ FKR
Sbjct: 66  SCTNKDISISQSRETLTGIPKYVVQIVNTCVSSECAPYNIHLHCGWFASARIINPKLFKR 125

Query: 111 VSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKF 149
           +S+DDCLVNGG PL  SQ+IRFTY+NSF+YP+A KSAKF
Sbjct: 126 LSFDDCLVNGGKPLTSSQIIRFTYTNSFVYPLALKSAKF 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294461965|gb|ADE76538.1| unknown [Picea sitchensis]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 73/98 (74%), Positives = 89/98 (90%)

Query: 53  CTNRDISISQSKDSTSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVS 112
           C+NRDISI+Q  D++SGIP+YIVQIVNTC+ GCAPS+IHLHCGWFASA+V+NP TF+R +
Sbjct: 81  CSNRDISITQYPDTSSGIPEYIVQIVNTCMHGCAPSNIHLHCGWFASAKVLNPNTFRRTA 140

Query: 113 YDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFC 150
           YDDCLVN G PL+PSQ+IRF Y NSFMYP++FKSA+FC
Sbjct: 141 YDDCLVNAGRPLKPSQIIRFAYENSFMYPLSFKSARFC 178

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302815215|ref|XP_002989289.1| hypothetical protein SELMODRAFT_129580 [Selaginella moellendorffii] gi|300142867|gb|EFJ09563.1| hypothetical protein SELMODRAFT_129580 [Selaginella moellendorffii]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 88/100 (88%), Gaps = 1/100 (1%)

Query: 52  SCTNRDISISQSKDSTS-GIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKR 110
           SCT++DISISQ +DS+S GIPQY+VQIVNTC+S CAPS+IH+ CGWFASA +VNP+ F+R
Sbjct: 33  SCTSKDISISQGRDSSSSGIPQYVVQIVNTCMSDCAPSNIHVFCGWFASAPLVNPKAFRR 92

Query: 111 VSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFC 150
           ++YDDCLVN G PLR  ++IRF Y+NSFMYP+ FKSAKFC
Sbjct: 93  LNYDDCLVNDGKPLRHGEIIRFQYANSFMYPLRFKSAKFC 132

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302798194|ref|XP_002980857.1| hypothetical protein SELMODRAFT_113463 [Selaginella moellendorffii] gi|300151396|gb|EFJ18042.1| hypothetical protein SELMODRAFT_113463 [Selaginella moellendorffii]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 88/101 (87%), Gaps = 1/101 (0%)

Query: 51  SSCTNRDISISQSKDSTS-GIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFK 109
            SCT++DISISQ +DS+S GIPQY+VQIVNTC+S CAPS+IH+ CGWFASA +VNP+ F+
Sbjct: 32  DSCTSKDISISQGRDSSSSGIPQYVVQIVNTCMSDCAPSNIHVFCGWFASAPLVNPKAFR 91

Query: 110 RVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKSAKFC 150
           R++YDDCLVN G PLR  ++IRF Y+NSFMYP+ FKSAKFC
Sbjct: 92  RLNYDDCLVNDGKPLRHGEIIRFQYANSFMYPLRFKSAKFC 132

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:1009023131	179	AT1G32583 "AT1G32583" [Arabido	0.618	0.525	0.510	2e-24
TAIR|locus:1006230300	176	TPD1 "AT4G24972" [Arabidopsis	0.717	0.619	0.433	1e-22
TAIR|locus:2116702	124	AT4G32090 [Arabidopsis thalian	0.625	0.766	0.284	3e-05

TAIR|locus:1009023131 AT1G32583 "AT1G32583" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 49/96 (51%), Positives = 66/96 (68%)

Query:    53 CTNRDISISQSKDST--SGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKR 110
             C+  DI + Q   +   SG+P Y V+I N+CVS C  ++IH+ CGWF+S R+VNPR F+R
Sbjct:    80 CSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRR 139

Query:   111 VSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIAFKS 146
             + YDDCLVN G PL P Q + F Y+NSF YP++  S
Sbjct:   140 LDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVAS 175

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009408 "response to heat" evidence=IEP

TAIR|locus:1006230300 TPD1 "AT4G24972" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 49/113 (43%), Positives = 73/113 (64%)

Query:    35 LSGISNKISHSFHEDK--SSCTNRDISISQS--KDSTSGIPQYIVQIVNTCVSGCAPSDI 90
             LS  + K   S   ++    C + DI ++Q+  +   +GIP Y+V+I N C+SGC  S I
Sbjct:    57 LSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRI 116

Query:    91 HLHCGWFASARVVNPRTFKRVSYDDCLVNGGMPLRPSQVIRFTYSNSFMYPIA 143
             H++CGWF+SA+++NPR FKR+ YDDCLVN G PL     + F Y+N+F Y ++
Sbjct:   117 HINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLS 169

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0001709 "cell fate determination" evidence=IMP

GO:0048653 "anther development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2116702 AT4G32090 [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 29/102 (28%), Positives = 45/102 (44%)

Query:    53 CTNRDISISQSKDSTS--GIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKR 110
             CT   I I   +      G P++ V ++NTC   C    + L CG FA A+ V P   + 
Sbjct:    24 CTFGKIQIGAVRTGREIGGQPEWKVTVINTC--NCFQKHVTLSCGGFAPAKPVKPLLLQP 81

Query:   111 VSYDDCLVNGGMPLRPSQVIRFTYSNS-FMY-PIAFKSAKFC 150
                + CL+  G  L      +FTY+   +++ P+  K    C
Sbjct:    82 QG-NTCLMIKGAALPAGATAQFTYAGQPYIFRPVGSKVDPSC 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.135   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      152       136   0.00091  102 3  11 22  0.36    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  141 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.76u 0.12s 12.88t   Elapsed:  00:00:01
  Total cpu time:  12.76u 0.12s 12.88t   Elapsed:  00:00:01
  Start:  Fri May 10 03:02:23 2013   End:  Fri May 10 03:02:24 2013

GO:0005576 "extracellular region" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: JGI80945 hypothetical protein (258 aa) (Physcomitrella patens)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
PF09478	80	CBM49: Carbohydrate binding domain CBM49; InterPro	96.7
PLN02171	629	endoglucanase	85.15

>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=96.70  E-value=0.012  Score=41.24  Aligned_cols=72  Identities=21%  Similarity=0.241  Sum_probs=52.8

Q ss_pred             ceEEEeecC---CCCc--ceEEEEEEeCCcCCCCccceEEecCCccceeeeCCcceeeecCCceEE-eCCccCCCCCeeE
Q 035666           58 ISISQSKDS---TSGI--PQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVSYDDCLV-NGGMPLRPSQVIR  131 (152)
Q Consensus        58 I~V~Q~~tg---~~G~--Pef~VtI~N~C~~~C~~s~V~L~C~gF~Sa~~VDP~lfrr~~~d~CLV-n~G~pI~~g~~Vs  131 (152)
                      |+|.|..++   .+|.  .+|.|+|+|.+.  =+++++++.-..+.    -+--=+.+.+++..-+ ..-.+|.+|++.+
T Consensus         1 i~i~q~~~~sW~~~g~~y~qy~v~I~N~~~--~~I~~~~i~~~~l~----~~iW~l~~~~~~~y~lPs~~~~i~pg~s~~   74 (80)
T PF09478_consen    1 ITITQTLVNSWTENGQTYTQYDVTITNNGS--KPIKSLKISIDNLY----GSIWGLDKVSGNTYTLPSYQPTIKPGQSFT   74 (80)
T ss_pred             CEEEEEEEeEEEeCCEEEEEEEEEEEECCC--CeEEEEEEEECccc----hhheeEEeccCCEEECCccccccCCCCEEE
Confidence            678888864   4454  579999999996  89999999998765    1222222356677766 3344999999999


Q ss_pred             EEec
Q 035666          132 FTYS  135 (152)
Q Consensus       132 F~YA  135 (152)
                      |-|-
T Consensus        75 FGYI   78 (80)
T PF09478_consen   75 FGYI   78 (80)
T ss_pred             EEEE
Confidence            9984

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region

>PLN02171 endoglucanase

Probab=85.15  E-value=2.3  Score=40.72  Aligned_cols=76  Identities=16%  Similarity=0.208  Sum_probs=51.5

Q ss_pred             CCCceEEEeecC-----CCCcceEEEEEEeCCcCCCCccceEEecCCccceeeeCCcceeeecCCceEEeCCc-cCCCCC
Q 035666           55 NRDISISQSKDS-----TSGIPQYIVQIVNTCVSGCAPSDIHLHCGWFASARVVNPRTFKRVSYDDCLVNGGM-PLRPSQ  128 (152)
Q Consensus        55 ~sDI~V~Q~~tg-----~~G~Pef~VtI~N~C~~~C~~s~V~L~C~gF~Sa~~VDP~lfrr~~~d~CLVn~G~-pI~~g~  128 (152)
                      .+.|+|.|..++     ..+..+|+|+|+|++.  .+++++++.=..+-.    |=.=+.+ .++...+-+-. .|.+|+
T Consensus       534 ~~ei~i~q~v~~sW~~~g~~y~qy~v~I~N~s~--~~ik~i~i~~~~~~~----~iW~v~~-~~ngytlPs~~~sL~aG~  606 (629)
T PLN02171        534 SSPIEIEQKATASWKAKGRTYYRYSTTVTNRSA--KTLKELHLGISKLYG----PLWGLTK-AGYGYVLPSWMPSLPAGK  606 (629)
T ss_pred             cceeEEEEEEEEEEEcCCceEEEEEEEEEECCC--Cceeeeeeeeccccc----cchheee-cCCcccCchhhcccCCCC
Confidence            447999998874     3567889999999996  999999996544431    1111111 22334444433 788899


Q ss_pred             eeEEEeccC
Q 035666          129 VIRFTYSNS  137 (152)
Q Consensus       129 ~VsF~YAws  137 (152)
                      ..+|-|=+.
T Consensus       607 s~tFgyI~~  615 (629)
T PLN02171        607 SLEFVYVHS  615 (629)
T ss_pred             eeEEEeecC
Confidence            999999855

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00