Citrus Sinensis ID: 035677

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MEGIQKKFGNGQGLPPIPLPSSFSRKNTGDDAGKEAKATAEPETEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQQEQPKLVNNLNQRFNKM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccc
Coil and Loop (DISEMBL)
megiqkkfgngqglppiplpssfsrkntgddagkeakataepetedRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAImsprikyadCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQQEQPKLVNNLNQRFNKM
Flexible Loop (DISEMBL)
megiqkkfgngqglppiplpssfsrKNTGDDAGKeakataepetedreleAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYnqqqeqpklvnnlnqrfnkm
Low Complexity Region (SEG)
MEGIQKKFGNGQGLPPIPLPSSFSRKNTGDDagkeakataepeteDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQQEQPKLVNNLNQRFNKM
Disordered region (IsUnstruct)
*********************************************************LASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLL*****************LTFK**QYEELKRERQILKQLCIMY********************
Disordered Region (DISOPRED)
**************************************************************************IMQLETEVKALQAEVAIMSPRIKYADCQNSL***************************ELKRERQI****************************
Disordered Region (DISEMBL)
MEGIQKKFGNGQGLPPIPLPSSFSRK***********************EAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQQEQPKLVNNLNQRFNKM
Disordered Region (DISPRO)
*********************************************DRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQQE***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGIQKKFGNGQGLPPIPLPSSFSRKNTGDDAGKEAKATAEPETEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQEQPKLVNNLNQRFNKM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q6S4P4	329	Transcription factor RF2b	no	no	0.642	0.328	0.3	7e-06
Q69IL4	380	Transcription factor RF2a	no	no	0.559	0.247	0.287	3e-05
Q9MA75	341	Transcription factor VIP1	no	no	0.577	0.284	0.288	6e-05
Q04088	398	Probable transcription fa	no	no	0.690	0.291	0.279	0.0001

>sp|Q6S4P4|RF2B_ORYSJ Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 35  EAKATAEPE--TEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIM 92
           EAK    PE  ++   ++ K+ +R+LA+RQ + + + ++  YI +LE +V+ LQ E   +
Sbjct: 115 EAKKAMTPEQLSDLAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTL 174

Query: 93  SPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142
           S ++       + L AEN  +K +L A   +   ++A  + LK+E + LK
Sbjct: 175 SAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLK 224

Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69IL4|RF2A_ORYSJ Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 52/94 (55%)

Query: 49  LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRA 108
           ++ K+ +R+ A+RQ + + + +++ YI +LE +V+ LQ E   +S ++       S L  
Sbjct: 180 VDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTT 239

Query: 109 ENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142
           EN  +K +L     ++  ++A  + LK E Q LK
Sbjct: 240 ENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLK 273

Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9MA75|VIP1_ARATH Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 52/97 (53%)

Query: 49  LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRA 108
           L+ K+ +R+LA+RQ + + + +++ Y  +LE +V+ LQ E   +S ++       S L  
Sbjct: 193 LDPKRAKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGTSELNT 252

Query: 109 ENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145
           EN  +K +L A   +   ++A  E L+ E   LK + 
Sbjct: 253 ENKHLKMRLQALEQQAELRDALNEALRDELNRLKVVA 289

Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q04088|POF21_ARATH Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 30  DDAGKEAK--ATAEPETEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQA 87
           DD+  +AK   +A    E   ++ K+ +R+ A+RQ + + + ++  YI +LE +V+ LQ 
Sbjct: 179 DDSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQT 238

Query: 88  EVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC 145
           E   +S ++       + L  EN  +K +L     ++  ++   E LK E Q LK L 
Sbjct: 239 EATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLT 296

Putative transcription factor with an activatory role.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
449450936	421	PREDICTED: uncharacterized protein LOC10	0.684	0.273	0.677	2e-35
224105917	213	predicted protein [Populus trichocarpa]	0.630	0.497	0.672	5e-32
255550579	230	hypothetical protein RCOM_1401660 [Ricin	0.648	0.473	0.628	5e-31
297827913	321	bZIP transcription factor family protein	0.708	0.370	0.395	3e-19
30689007	321	basic helix-loop-helix domain-containing	0.708	0.370	0.395	3e-19
18491297	311	At2g42380/MHK10.10 [Arabidopsis thaliana	0.708	0.382	0.395	4e-19
449453539	326	PREDICTED: uncharacterized protein LOC10	0.678	0.349	0.401	2e-18
357474531	328	Transcription factor RF2b [Medicago trun	0.708	0.362	0.396	5e-18
255568343	325	Transcription factor RF2a, putative [Ric	0.625	0.323	0.416	7e-18
225446525	295	PREDICTED: uncharacterized protein LOC10	0.625	0.355	0.398	5e-17

>gi|449450936|ref|XP_004143218.1| PREDICTED: uncharacterized protein LOC101206694 [Cucumis sativus]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/121 (67%), Positives = 97/121 (80%), Gaps = 6/121 (4%)

Query: 42  PETE-DRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYAD 100
           P+++ D   EAK+LRRV+ SRQYSQKYRLKQLHYI QLE+E+KALQAEV I SPRIK+ D
Sbjct: 270 PDSDKDLTAEAKRLRRVMQSRQYSQKYRLKQLHYITQLESELKALQAEVTITSPRIKFMD 329

Query: 101 CQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQQEQPKLVNN 160
            QNSLLRAEN S+K+KLSA++GEL FKEAQYEELKRER +LK++   Y     Q KLV  
Sbjct: 330 RQNSLLRAENYSIKEKLSAYTGELLFKEAQYEELKRERNMLKEIYEAY-----QIKLVET 384

Query: 161 L 161
           L
Sbjct: 385 L 385

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105917|ref|XP_002313978.1| predicted protein [Populus trichocarpa] gi|222850386|gb|EEE87933.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 89/107 (83%), Gaps = 1/107 (0%)

Query: 46  DRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSL 105
           D  L+ K+LRR++ASRQYSQKYRL+Q+ YIMQLETEVK+LQAEVAI+ PRI+Y++ QNSL
Sbjct: 55  DPNLDPKRLRRIMASRQYSQKYRLRQMQYIMQLETEVKSLQAEVAIIGPRIEYSNRQNSL 114

Query: 106 LRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQQ 152
           LR EN S+K KLS+ S EL FKEAQYEE+K+ER  +KQ  I+ NQ Q
Sbjct: 115 LRMENSSIKHKLSSCSSELMFKEAQYEEMKKERDHMKQSYIV-NQYQ 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550579|ref|XP_002516339.1| hypothetical protein RCOM_1401660 [Ricinus communis] gi|223544505|gb|EEF46023.1| hypothetical protein RCOM_1401660 [Ricinus communis]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 89/113 (78%), Gaps = 4/113 (3%)

Query: 36  AKATAEPETEDRELEA----KKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAI 91
           A+ T   +++ R L++    KKLRR++ASR+YSQKYR+KQLHYI+QLETEVKALQAEV+I
Sbjct: 14  AQMTGHKDSQGRPLDSNMAQKKLRRLMASREYSQKYRMKQLHYILQLETEVKALQAEVSI 73

Query: 92  MSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144
           +SPRIKY D QNSLLR ENGS+K +LS FS +L  KEA+ EE K E   L+QL
Sbjct: 74  ISPRIKYVDRQNSLLRVENGSIKHRLSTFSSDLMIKEAEIEENKAEVNRLRQL 126

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827913|ref|XP_002881839.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297327678|gb|EFH58098.1| bZIP transcription factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 86/134 (64%), Gaps = 15/134 (11%)

Query: 18  PLPSSFSRKNTGDDAGKEAKATAEPETEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQ 77
           P   + S  N+GD +G            +R L+ K+++R+LA+RQ +Q+ R+++L YI +
Sbjct: 166 PEDGTASNNNSGDSSG------------NRILDPKRVKRILANRQSAQRSRVRKLQYISE 213

Query: 78  LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRE 137
           LE  V +LQAEV+++SPR+ + D Q  LL  +N ++KQ+++A S +  FK+A  E LKRE
Sbjct: 214 LERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALSQDKIFKDAHQEALKRE 273

Query: 138 RQILKQLCIMYNQQ 151
            + L+Q+   YNQQ
Sbjct: 274 IERLRQV---YNQQ 284

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689007|ref|NP_850369.1| basic helix-loop-helix domain-containing protein [Arabidopsis thaliana] gi|330255020|gb|AEC10114.1| basic helix-loop-helix domain-containing protein [Arabidopsis thaliana]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 86/134 (64%), Gaps = 15/134 (11%)

Query: 18  PLPSSFSRKNTGDDAGKEAKATAEPETEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQ 77
           P   + S  N+GD +G            +R L+ K+++R+LA+RQ +Q+ R+++L YI +
Sbjct: 166 PEDGTASNNNSGDSSG------------NRILDPKRVKRILANRQSAQRSRVRKLQYISE 213

Query: 78  LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRE 137
           LE  V +LQAEV+++SPR+ + D Q  LL  +N ++KQ+++A S +  FK+A  E LKRE
Sbjct: 214 LERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALSQDKLFKDAHQEALKRE 273

Query: 138 RQILKQLCIMYNQQ 151
            + L+Q+   YNQQ
Sbjct: 274 IERLRQV---YNQQ 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18491297|gb|AAL69473.1| At2g42380/MHK10.10 [Arabidopsis thaliana]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 86/134 (64%), Gaps = 15/134 (11%)

Query: 18  PLPSSFSRKNTGDDAGKEAKATAEPETEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQ 77
           P   + S  N+GD +G            +R L+ K+++R+LA+RQ +Q+ R+++L YI +
Sbjct: 156 PEDGTASNNNSGDSSG------------NRILDPKRVKRILANRQSAQRSRVRKLQYISE 203

Query: 78  LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRE 137
           LE  V +LQAEV+++SPR+ + D Q  LL  +N ++KQ+++A S +  FK+A  E LKRE
Sbjct: 204 LERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALSQDKLFKDAHQEALKRE 263

Query: 138 RQILKQLCIMYNQQ 151
            + L+Q+   YNQQ
Sbjct: 264 IERLRQV---YNQQ 274

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453539|ref|XP_004144514.1| PREDICTED: uncharacterized protein LOC101205276 [Cucumis sativus] gi|449517287|ref|XP_004165677.1| PREDICTED: uncharacterized protein LOC101231108 [Cucumis sativus]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 82/117 (70%), Gaps = 3/117 (2%)

Query: 35  EAKATAEPETEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSP 94
           ++ +TA   + DR  + K+++R+LA+RQ +Q+ R+++L YI +LE  V +LQAEV+++SP
Sbjct: 170 QSNSTATAGSTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSP 229

Query: 95  RIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQ 151
           R+ + D Q  LL  +N ++KQ+++A + +  FK+A  E LKRE + L+Q+   Y+QQ
Sbjct: 230 RVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQV---YHQQ 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474531|ref|XP_003607550.1| Transcription factor RF2b [Medicago truncatula] gi|358347215|ref|XP_003637655.1| Transcription factor RF2b [Medicago truncatula] gi|355503590|gb|AES84793.1| Transcription factor RF2b [Medicago truncatula] gi|355508605|gb|AES89747.1| Transcription factor RF2b [Medicago truncatula]

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 81/126 (64%), Gaps = 7/126 (5%)

Query: 27  NTGDDAGKEAKATAEPETEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQ 86
           N  DD        + P+  D     K+++R+LA+RQ +Q+ R+++L YI +LE  V +LQ
Sbjct: 175 NDEDDNNGNTTTFSSPKITD----PKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQ 230

Query: 87  AEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI 146
           AEV+++SPR+ Y D Q  LL  +N ++KQ+++A + +  FK+A  E LKRE + L+Q+  
Sbjct: 231 AEVSVLSPRVAYLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQV-- 288

Query: 147 MYNQQQ 152
            Y+QQQ
Sbjct: 289 -YHQQQ 293

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568343|ref|XP_002525146.1| Transcription factor RF2a, putative [Ricinus communis] gi|223535605|gb|EEF37273.1| Transcription factor RF2a, putative [Ricinus communis]

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 78/108 (72%), Gaps = 3/108 (2%)

Query: 44  TEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQN 103
           + DR ++ K+++R+LA+RQ +Q+ R+++L YI +LE  V +LQAEV+++SPR+ + D Q 
Sbjct: 190 SSDRIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQR 249

Query: 104 SLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQ 151
            LL  +N ++KQ+++A + +  FK+A  E LKRE + L+Q+   Y+QQ
Sbjct: 250 LLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQV---YHQQ 294

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446525|ref|XP_002275912.1| PREDICTED: uncharacterized protein LOC100243740 [Vitis vinifera] gi|302143381|emb|CBI21942.3| unnamed protein product [Vitis vinifera]

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 77/108 (71%), Gaps = 3/108 (2%)

Query: 44  TEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQN 103
           + DR ++ K+++R+LA+RQ +Q+ R+++L YI +LE  V +LQ EV+++SPR+ + D Q 
Sbjct: 164 SNDRIVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPRVAFLDHQR 223

Query: 104 SLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQ 151
            LL  +N ++KQ+++A + +  FK+A  + LKRE + L+Q+   Y+QQ
Sbjct: 224 LLLNVDNSALKQRIAALAQDKIFKDAHQDALKREIERLRQV---YHQQ 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2053761	321	BZIP34 "AT2G42380" [Arabidopsi	0.613	0.320	0.443	7.2e-20
TAIR|locus:2085425	329	BZIP61 [Arabidopsis thaliana (	0.660	0.337	0.391	1.1e-18
TAIR|locus:2196225	374	AT1G58110 "AT1G58110" [Arabido	0.607	0.272	0.327	2.9e-10
TAIR|locus:2033123	337	bZIP52 "AT1G06850" [Arabidopsi	0.559	0.278	0.276	3.1e-09
TAIR|locus:2008673	300	AT1G35490 "AT1G35490" [Arabido	0.625	0.35	0.330	3.5e-08
TAIR|locus:2141826	553	AT4G38900 "AT4G38900" [Arabido	0.678	0.206	0.290	8.2e-08
TAIR|locus:2061908	367	AT2G40620 "AT2G40620" [Arabido	0.559	0.256	0.276	9.1e-08
TAIR|locus:2031123	341	VIP1 "VIRE2-interacting protei	0.559	0.275	0.297	4.6e-07
TAIR|locus:2061340	398	AT2G31370 [Arabidopsis thalian	0.571	0.241	0.281	1e-06
TAIR|locus:2198856	423	AT1G06070 "AT1G06070" [Arabido	0.571	0.226	0.270	1.4e-06

TAIR|locus:2053761 BZIP34 "AT2G42380" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 47/106 (44%), Positives = 77/106 (72%)

Query:    46 DRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSL 105
             +R L+ K+++R+LA+RQ +Q+ R+++L YI +LE  V +LQAEV+++SPR+ + D Q  L
Sbjct:   182 NRILDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLL 241

Query:   106 LRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQ 151
             L  +N ++KQ+++A S +  FK+A  E LKRE + L+Q+   YNQQ
Sbjct:   242 LNVDNSALKQRIAALSQDKLFKDAHQEALKREIERLRQV---YNQQ 284

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2085425 BZIP61 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 45/115 (39%), Positives = 81/115 (70%)

Query:    50 EAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAE 109
             + K+++R+LA+RQ +Q+ R+++L YI +LE  V +LQ EV+++SPR+ + D Q  LL  +
Sbjct:   202 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPRVAFLDHQRLLLNVD 261

Query:   110 NGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQQEQPKLVNNLNQR 164
             N ++KQ+++A + +  FK+A  E LKRE + L+Q+   Y+QQ  + K+ NN++ +
Sbjct:   262 NSAIKQRIAALAQDKIFKDAHQEALKREIERLRQV---YHQQSLK-KMENNVSDQ 312

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2196225 AT1G58110 "AT1G58110" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 35/107 (32%), Positives = 66/107 (61%)

Query:    50 EAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAE 109
             EA   +R  A +Q++Q+ R+++L YI +LE  V+ LQAE + +S  + + + +N +L  E
Sbjct:   231 EADNTKR--AKQQFAQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQRNLILSME 288

Query:   110 NGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQQEQPK 156
             N ++K++L + + E   K+ + E L++E   + +L  +Y QQQ+  K
Sbjct:   289 NKALKKRLESIAQEKLIKQLEQEVLEKE---IGRLRALYQQQQQTQK 332

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2033123 bZIP52 "AT1G06850" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
 Identities = 26/94 (27%), Positives = 53/94 (56%)

Query:    49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRA 108
             ++ K+ +R+LA+RQ + + + ++  YI +LE +V++LQ E   +S ++       + L  
Sbjct:   147 IDPKRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLAN 206

Query:   109 ENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142
             EN  +K +L A   +   + A  E L++E + +K
Sbjct:   207 ENTELKLRLQAMEQQAQLRNALNEALRKEVERMK 240

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2008673 AT1G35490 "AT1G35490" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 35/106 (33%), Positives = 54/106 (50%)

Query:    62 QYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS 121
             Q + + RL++L YI  LE  ++ LQ E   MS  I Y D Q  +L  EN ++KQ++ + +
Sbjct:   178 QNAHRARLRRLEYISDLERTIQVLQVEGCEMSSAIHYLDQQLLMLSMENRALKQRMDSLA 237

Query:   122 GELTFKEAQYEELKRERQILKQLCIMYNQQQEQPKLVNNLNQRFNK 167
                  K  + + L+RE   L Q      Q Q+  K V  +  R+NK
Sbjct:   238 EIQKLKHVEQQLLEREIGNL-QFRRHQQQPQQNQKQVQAIQNRYNK 282

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2141826 AT4G38900 "AT4G38900" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
 Identities = 34/117 (29%), Positives = 62/117 (52%)

Query:    54 LRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSM 113
             L R+LA+RQ + + + +++ YI++LE +V+ LQ E   +S ++         L  +N  +
Sbjct:   404 LFRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQRDMMGLTNQNNEL 463

Query:   114 KQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYNQQQEQPKL-VNNLN-QRFNKM 168
             K +L A   +   ++A  E L  E Q LK L I  + Q E  +  + +LN + F ++
Sbjct:   464 KFRLQAMEQQARLRDALNEALNGEVQRLK-LAIGESSQNESERSKMQSLNAEMFQQL 519

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2061908 AT2G40620 "AT2G40620" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 9.1e-08, P = 9.1e-08
 Identities = 26/94 (27%), Positives = 55/94 (58%)

Query:    49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRA 108
             ++ K+ +R++A+RQ + + + ++  YI++LE +V+ LQ E   +S ++       + L +
Sbjct:   147 VDPKRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTTGLSS 206

Query:   109 ENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142
             EN  +K +L     +   ++A  E+LK+E + LK
Sbjct:   207 ENTELKLRLQVMEQQAKLRDALNEQLKKEVERLK 240

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2031123 VIP1 "VIRE2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 28/94 (29%), Positives = 51/94 (54%)

Query:    49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRA 108
             L+ K+ +R+LA+RQ + + + +++ Y  +LE +V+ LQ E   +S ++       S L  
Sbjct:   193 LDPKRAKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGTSELNT 252

Query:   109 ENGSMKQKLSAFSGELTFKEAQYEELKRERQILK 142
             EN  +K +L A   +   ++A  E L+ E   LK
Sbjct:   253 ENKHLKMRLQALEQQAELRDALNEALRDELNRLK 286

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045596 "negative regulation of cell differentiation" evidence=IDA

GO:0009294 "DNA mediated transformation" evidence=IDA

GO:0051170 "nuclear import" evidence=IDA

GO:0051019 "mitogen-activated protein kinase binding" evidence=IPI

GO:0008272 "sulfate transport" evidence=IMP

GO:0009970 "cellular response to sulfate starvation" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2061340 AT2G31370 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 27/96 (28%), Positives = 51/96 (53%)

Query:    49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRA 108
             ++ K+ +R+ A+RQ + + + ++  YI +LE +V+ LQ E   +S ++       + L  
Sbjct:   200 IDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTV 259

Query:   109 ENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144
             EN  +K +L     ++  ++   E LK E Q LK L
Sbjct:   260 ENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVL 295

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2198856 AT1G06070 "AT1G06070" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 26/96 (27%), Positives = 53/96 (55%)

Query:    49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRA 108
             ++ K+ +R+ A+RQ + + + +++ YI +LE +V+ LQ E   +S ++       + L  
Sbjct:   209 IDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLGV 268

Query:   109 ENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL 144
             EN  +K ++     ++  ++A  + LK E Q LK L
Sbjct:   269 ENNELKLRVQTMEQQVHLQDALNDALKEEVQHLKVL 304

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IX000865 hypothetical protein (213 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
smart00338	65	smart00338, BRLZ, basic region leucin zipper	0.001

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 48  ELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLR 107
           E + K+ RR   +R+ +++ R ++   I +LE +V+ L+AE   +   I         LR
Sbjct: 1   EEDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEI-------ERLR 53

Query: 108 AENGSMKQKLSA 119
            E   +K +L  
Sbjct: 54  RELEKLKSELEE 65

Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
smart00338	65	BRLZ basic region leucin zipper.	99.49
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.34
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.15
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.05
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	98.85
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	98.61
KOG3584	348	consensus cAMP response element binding protein an	98.55
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	97.87
KOG0837	279	consensus Transcriptional activator of the JUN fam	97.39
KOG4571	294	consensus Activating transcription factor 4 [Trans	96.84
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.71
PRK13169	110	DNA replication intiation control protein YabA; Re	96.6
KOG3119	269	consensus Basic region leucine zipper transcriptio	96.2
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	96.2
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	96.12
COG4467	114	Regulator of replication initiation timing [Replic	96.02
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	95.96
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	95.82
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	95.78
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.0
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.95
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.61
PRK10884	206	SH3 domain-containing protein; Provisional	93.95
PRK15422	79	septal ring assembly protein ZapB; Provisional	93.35
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	93.19
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	93.15
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.95
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.94
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	92.93
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	92.78
COG2433	652	Uncharacterized conserved protein [Function unknow	92.55
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	92.51
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	92.36
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	92.22
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	92.12
PRK02793	72	phi X174 lysis protein; Provisional	92.1
PRK00295	68	hypothetical protein; Provisional	92.04
PRK02119	73	hypothetical protein; Provisional	91.91
PRK00736	68	hypothetical protein; Provisional	91.65
PRK04325	74	hypothetical protein; Provisional	91.57
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.55
PRK04406	75	hypothetical protein; Provisional	91.53
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	91.47
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	91.32
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	90.6
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	90.57
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	90.09
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	90.06
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	90.0
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	89.79
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	89.79
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	89.69
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	89.46
PRK00846	77	hypothetical protein; Provisional	89.29
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	88.59
PRK11637	428	AmiB activator; Provisional	88.25
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	88.15
PRK11637	428	AmiB activator; Provisional	87.96
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	87.7
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	87.58
KOG2010	405	consensus Double stranded RNA binding protein [Gen	87.32
PF14662	193	CCDC155: Coiled-coil region of CCDC155	87.28
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.17
PF05837	106	CENP-H: Centromere protein H (CENP-H); InterPro: I	87.16
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	86.75
PF00038	312	Filament: Intermediate filament protein; InterPro:	86.64
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	86.56
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	86.55
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	86.5
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	86.38
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	86.03
KOG3650	120	consensus Predicted coiled-coil protein [General f	85.62
PF00038	312	Filament: Intermediate filament protein; InterPro:	85.15
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	84.69
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	84.28
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	83.98
COG4942	420	Membrane-bound metallopeptidase [Cell division and	83.98
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	83.79
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	83.78
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	83.58
PRK09039	343	hypothetical protein; Validated	83.51
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	83.27
PRK09039	343	hypothetical protein; Validated	83.16
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	82.87
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	82.5
KOG4807	593	consensus F-actin binding protein, regulates actin	82.47
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	82.43
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	81.85
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	81.83
PF15294	278	Leu_zip: Leucine zipper	81.77
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	81.2
PF14817	632	HAUS5: HAUS augmin-like complex subunit 5	80.47
PF06216	389	RTBV_P46: Rice tungro bacilliform virus P46 protei	80.44

>smart00338 BRLZ basic region leucin zipper

Probab=99.49  E-value=1.9e-13  Score=93.79  Aligned_cols=62  Identities=24%  Similarity=0.260  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 035677           49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAEN  110 (168)
Q Consensus        49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN  110 (168)
                      .|+|+.+|++.||+||++||.||+.|+.+||.+|..|..+|..|..++..|..++..|..++
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            48899999999999999999999999999999999999999999999999988887777665

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.34  E-value=8.8e-12  Score=85.36  Aligned_cols=61  Identities=26%  Similarity=0.380  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 035677           50 EAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAEN  110 (168)
Q Consensus        50 D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN  110 (168)
                      +.|+.+|++.||+||+++|.||+.||.+||.+|..|..+|..|..++..|..++..|..+|
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5678899999999999999999999999999999999999999999999999999998886

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.15  E-value=2.9e-10  Score=75.82  Aligned_cols=52  Identities=25%  Similarity=0.290  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677           49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADC  101 (168)
Q Consensus        49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~  101 (168)
                      .|+++.||. .||.+|++||.||+.|+.+|+..|..|..+|..|..+|..|..
T Consensus         2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen    2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            478899999 9999999999999999999999999999999999998888765

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.05  E-value=3.3e-09  Score=90.90  Aligned_cols=75  Identities=27%  Similarity=0.273  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677           49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE  123 (168)
Q Consensus        49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~  123 (168)
                      -++|-.||+|+||..|+-+|.||+..++++|..|..|..||..|..+-..|...+..|..+|.+|.++|..+.++
T Consensus        66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~  140 (292)
T KOG4005|consen   66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE  140 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            478888999999999999999999999999999999999999999999999999999999999999888866654

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=98.85  E-value=1.4e-08  Score=94.78  Aligned_cols=64  Identities=25%  Similarity=0.311  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677           51 AKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMK  114 (168)
Q Consensus        51 ~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk  114 (168)
                      -||..|||+||+||..||.||+.|+.-||.+++.|..||..|..+-..|.++...|.+||..|+
T Consensus       280 ~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k  343 (655)
T KOG4343|consen  280 LKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK  343 (655)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence            3566689999999999999999999999999999998888776666666666666666666554

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=98.61  E-value=8.9e-08  Score=87.96  Aligned_cols=70  Identities=26%  Similarity=0.315  Sum_probs=62.1

Q ss_pred             hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 035677           47 RELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQK  116 (168)
Q Consensus        47 ~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~r  116 (168)
                      .+.+-||+||+|+|.+||+-||-||+.||+.||.+|..--+||.+|..++..|+.+|..|-.+-..|...
T Consensus       246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~  315 (472)
T KOG0709|consen  246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL  315 (472)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999999999999998888777765555433

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=98.55  E-value=3e-07  Score=80.76  Aligned_cols=56  Identities=21%  Similarity=0.277  Sum_probs=50.1

Q ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677           48 ELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQN  103 (168)
Q Consensus        48 ~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~  103 (168)
                      +.--||.-|+++|||.|+--|.+|+.|+.=||.+|..|+.+|..|-++|..|..-|
T Consensus       287 e~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY  342 (348)
T KOG3584|consen  287 EATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY  342 (348)
T ss_pred             hhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence            34678888999999999999999999999999999999999999988888776543

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=97.87  E-value=2.9e-07  Score=67.39  Aligned_cols=60  Identities=30%  Similarity=0.439  Sum_probs=47.5

Q ss_pred             chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677           44 TEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQN  103 (168)
Q Consensus        44 ~~~~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~  103 (168)
                      +.+...+-|.+||.+.||.+|+.+|-||+.++.+||..+..|..+...|..++..+..+.
T Consensus        22 t~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~   81 (92)
T PF03131_consen   22 TEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER   81 (92)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566789999999999999999999999999999999888776666555555444433

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=97.39  E-value=0.00068  Score=59.01  Aligned_cols=63  Identities=29%  Similarity=0.351  Sum_probs=50.5

Q ss_pred             hHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677           50 EAKKLRR-VLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA  119 (168)
Q Consensus        50 D~Kr~KR-ilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~  119 (168)
                      +..|+.| -+.||+.|.+||.||+.+|..||.+|..|..+|..|...+..|.       ..-.++++++..
T Consensus       203 e~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~-------~~v~e~k~~V~~  266 (279)
T KOG0837|consen  203 EKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLK-------EQVAELKQKVME  266 (279)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH-------HHHHHHHHHHHH
Confidence            5566666 47999999999999999999999999999999998888777554       334556666543

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=96.84  E-value=0.0074  Score=53.20  Aligned_cols=46  Identities=24%  Similarity=0.244  Sum_probs=35.9

Q ss_pred             chhhhhhHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677           44 TEDRELEAKKLRRVLASRQY-SQKYRLKQLHYIMQLETEVKALQAEV   89 (168)
Q Consensus        44 ~~~~~~D~Kr~KRilaNReS-A~RSR~RK~~yi~eLE~kV~~Lq~En   89 (168)
                      +.....++|+.+|+-.+|.. |.|.|.||+.-.++|+.+...|+..|
T Consensus       218 ~~~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN  264 (294)
T KOG4571|consen  218 AHPYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRN  264 (294)
T ss_pred             CCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456778888887666666 99999999999999999887666543

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.71  E-value=0.0086  Score=45.52  Aligned_cols=50  Identities=22%  Similarity=0.316  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      .-|.+||.++..|-.+...|...+..+.++|..|+.||..|+.+|..+.+
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35789999999999999999999999999999999999999999998876

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=96.60  E-value=0.011  Score=45.22  Aligned_cols=49  Identities=20%  Similarity=0.327  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      -+.+||.++..|-.+...|...+..+-++|..|..||..|+.+|..+.+
T Consensus         9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~   57 (110)
T PRK13169          9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4788999999999999999999999999999999999999999998744

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=96.20  E-value=0.075  Score=45.94  Aligned_cols=49  Identities=16%  Similarity=0.156  Sum_probs=40.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677           59 ASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLR  107 (168)
Q Consensus        59 aNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~  107 (168)
                      +|=++|+|||.+.++-.++...+|..|+.||..|..+|..|+.+...|+
T Consensus       201 rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~  249 (269)
T KOG3119|consen  201 RNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR  249 (269)
T ss_pred             hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999888888777776665554444

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=96.20  E-value=0.091  Score=41.68  Aligned_cols=68  Identities=34%  Similarity=0.427  Sum_probs=48.2

Q ss_pred             hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677           47 RELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS  121 (168)
Q Consensus        47 ~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~  121 (168)
                      ..+--|-.||-|+||=.|+--|.|..+.-.+||.+-..|..++..|.       .++..+..|-..++.+...|.
T Consensus        48 EVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~-------~e~s~~~~E~da~k~k~e~l~  115 (135)
T KOG4196|consen   48 EVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLK-------EENSRLRRELDAYKSKYEALQ  115 (135)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            44567888999999999999999999988888877666665554444       444445555555665555543

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=96.12  E-value=0.29  Score=38.07  Aligned_cols=82  Identities=20%  Similarity=0.187  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677           66 KYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC  145 (168)
Q Consensus        66 RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~  145 (168)
                      .++.|=..+-++|..++..|..++..|...+..|..+...+..+...+..+...+.....-...-....+.|+++|+...
T Consensus        45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~  124 (151)
T PF11559_consen   45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL  124 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556667777777777777777777777777777777777777777777776666666667778888888888776


Q ss_pred             HH
Q 035677          146 IM  147 (168)
Q Consensus       146 ~~  147 (168)
                      ++
T Consensus       125 ~~  126 (151)
T PF11559_consen  125 QQ  126 (151)
T ss_pred             HH
Confidence            54

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=96.02  E-value=0.027  Score=43.37  Aligned_cols=46  Identities=24%  Similarity=0.332  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677           74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA  119 (168)
Q Consensus        74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~  119 (168)
                      -+++||.++..|-.+...|...+..+-.+|..|+.||..|+.||..
T Consensus         9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            3688999999999999999999999999999999999999999988

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=95.96  E-value=0.38  Score=41.98  Aligned_cols=90  Identities=20%  Similarity=0.260  Sum_probs=72.4

Q ss_pred             cchhhhhhHHHHHHHHHhhHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677           43 ETEDRELEAKKLRRVLASRQY--SQKYRLKQLHY-IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA  119 (168)
Q Consensus        43 ~~~~~~~D~Kr~KRilaNReS--A~RSR~RK~~y-i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~  119 (168)
                      +.-...+|-||+|--.+-.-+  -.+.|+-++.| |-||+.+-..|+.||..|...-..|..++..|.++-..|++.|..
T Consensus        64 LS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~  143 (292)
T KOG4005|consen   64 LSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE  143 (292)
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            455577899999876654333  23456667766 679999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHH
Q 035677          120 FSGELTFKEAQYE  132 (168)
Q Consensus       120 l~q~~~lkda~~e  132 (168)
                      +.++++.....+|
T Consensus       144 ~~~~~~~~~~v~e  156 (292)
T KOG4005|consen  144 LKQQQQHNTRVIE  156 (292)
T ss_pred             hHHHHHHhhHHHh
Confidence            9998888776554

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=95.82  E-value=0.11  Score=36.70  Aligned_cols=61  Identities=23%  Similarity=0.347  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677           77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL  144 (168)
Q Consensus        77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~  144 (168)
                      .||..|..|+..+..+..++...+..+..|..|+...-.+|.       .....+..|+.|++.|+.-
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~-------~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLG-------DAYEENNKLKEENEALRKE   62 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            366666666666666666666666666666666555444444       4444667777777766643

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=95.78  E-value=0.2  Score=35.35  Aligned_cols=50  Identities=16%  Similarity=0.078  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      ..++-+.+++...+.++..|..+-+.........-.+|..|+..+.+|.+
T Consensus        12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~   61 (69)
T PF14197_consen   12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRK   61 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777777766555555555555555555555555444

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.00  E-value=0.76  Score=32.65  Aligned_cols=48  Identities=19%  Similarity=0.279  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677           74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS  121 (168)
Q Consensus        74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~  121 (168)
                      -++.||.+|+.+-..++.|..++..|..++..|..+|..|+....-|.
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~   52 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK   52 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            467777777776666666666555555555555555555544444333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.95  E-value=2  Score=37.09  Aligned_cols=98  Identities=23%  Similarity=0.201  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhHHHHHHHHHHHHHHhhh
Q 035677           50 EAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYA---------DCQNSLLRAENGSMKQKLSAF  120 (168)
Q Consensus        50 D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l---------~~~~~~L~~EN~~Lk~rL~~l  120 (168)
                      -++-++.+.+-.+.+.+.-.-+..-+++|+.+|..++.+...++.++...         +.++..|..|-..++.++.+|
T Consensus        29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l  108 (239)
T COG1579          29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL  108 (239)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            46667777788888888888899999999999999999999999988765         457788888888889999888


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677          121 SGELTFKEAQYEELKRERQILKQLCIM  147 (168)
Q Consensus       121 ~q~~~lkda~~e~L~~Ev~rLk~~~~~  147 (168)
                      +.+..=-+-..+.|.+|+.-|+-....
T Consensus       109 e~el~~l~~~~~~l~~~i~~l~~~~~~  135 (239)
T COG1579         109 EDELAELMEEIEKLEKEIEDLKERLER  135 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887666666677777777777665543

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.61  E-value=0.32  Score=40.76  Aligned_cols=71  Identities=21%  Similarity=0.248  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677           73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM  147 (168)
Q Consensus        73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~  147 (168)
                      .-|.||+..=..|..||+.|...|..++..+..|..++..|+.++.++.+-.+...    +|++|+..||..+..
T Consensus         8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK----~l~eEledLk~~~~~   78 (193)
T PF14662_consen    8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAK----ALEEELEDLKTLAKS   78 (193)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            34778888888899999999999999999999999999999999999875555443    456666667766543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.95  E-value=0.73  Score=38.61  Aligned_cols=49  Identities=20%  Similarity=0.263  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 035677           89 VAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRE  137 (168)
Q Consensus        89 n~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~E  137 (168)
                      .++|...+.........|..+|..|+.+|..+..+...-++.++.++..
T Consensus       120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555555566677777666666555433333344444333

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=93.35  E-value=1.7  Score=31.68  Aligned_cols=41  Identities=17%  Similarity=0.214  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677           74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMK  114 (168)
Q Consensus        74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk  114 (168)
                      -++.||.+|+.---.++-|.-+|..|..++..|..++..++
T Consensus         5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~   45 (79)
T PRK15422          5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ   45 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777765554444444444444444444444444433

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.19  E-value=1.9  Score=31.10  Aligned_cols=10  Identities=30%  Similarity=0.488  Sum_probs=5.1

Q ss_pred             HHHHHHHHHH
Q 035677           75 IMQLETEVKA   84 (168)
Q Consensus        75 i~eLE~kV~~   84 (168)
                      ++.||.+|++
T Consensus         6 ~ekLE~Kiqq   15 (79)
T COG3074           6 FEKLEAKVQQ   15 (79)
T ss_pred             HHHHHHHHHH
Confidence            4555555543

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=93.15  E-value=2.4  Score=35.44  Aligned_cols=78  Identities=22%  Similarity=0.179  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035677           73 HYIMQLETEVKALQAEVAIMSPRIKYADCQ----NSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMY  148 (168)
Q Consensus        73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~----~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~~  148 (168)
                      .|...||..+..|+.+...+..+|..+...    -.....+...|..+-..+...-.--++-...|+.||..||.-...+
T Consensus       136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~  215 (221)
T PF05700_consen  136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL  215 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588899999999999999999998877542    2334455567777777777766666778889999999999887764


Q ss_pred             Hh
Q 035677          149 NQ  150 (168)
Q Consensus       149 ~q  150 (168)
                      .+
T Consensus       216 ~~  217 (221)
T PF05700_consen  216 KE  217 (221)
T ss_pred             hc
Confidence            44

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.95  E-value=0.83  Score=32.45  Aligned_cols=11  Identities=64%  Similarity=0.779  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 035677          132 EELKRERQILK  142 (168)
Q Consensus       132 e~L~~Ev~rLk  142 (168)
                      +.|..|.++|+
T Consensus        42 ~~L~~en~~L~   52 (72)
T PF06005_consen   42 EELKEENEQLK   52 (72)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.94  E-value=2.8  Score=34.12  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKY   98 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~   98 (168)
                      |.+|+..+..|+.++..+...|..
T Consensus       118 l~~l~~~~~~L~~~~~~l~~~l~e  141 (194)
T PF08614_consen  118 LAELEAELAQLEEKIKDLEEELKE  141 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444443333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=92.93  E-value=0.77  Score=33.41  Aligned_cols=48  Identities=23%  Similarity=0.309  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677           76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE  123 (168)
Q Consensus        76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~  123 (168)
                      ++|..++..||.....|..+|.....+|..|..||.-|..=|..|...
T Consensus        19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~   66 (80)
T PF10224_consen   19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS   66 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567788999999999999999999999999999999999999887654

The exact function is unknown.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.78  E-value=2.1  Score=36.58  Aligned_cols=74  Identities=12%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677           71 QLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL  144 (168)
Q Consensus        71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~  144 (168)
                      .-.+|.|++.+...|..|-.....+|..+.++...|...-..++..-............++..|+.||.++|.-
T Consensus        30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44799999999999999999999999999999999988888888777777776677777999999999999887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.55  E-value=1.4  Score=42.82  Aligned_cols=69  Identities=16%  Similarity=0.186  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677           73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC  145 (168)
Q Consensus        73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~  145 (168)
                      .-|..++.+|..|+.||+.|...+..+.....+|..+-..++.++.    ....++-..+++..+|.+|+.-.
T Consensus       422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L  490 (652)
T COG2433         422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKEL  490 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHH
Confidence            3466778888888888888888888887777777777666665554    34445555566666666665544

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=92.51  E-value=0.99  Score=31.71  Aligned_cols=46  Identities=20%  Similarity=0.226  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF  120 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l  120 (168)
                      |+.|-.....|..||..|..++..+..+...|...|..=+.|+.+|
T Consensus         9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam   54 (65)
T TIGR02449         9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM   54 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555666666666666666655555555555555555544

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=92.36  E-value=0.87  Score=31.66  Aligned_cols=50  Identities=12%  Similarity=0.165  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      ..|.+||.++..++.-+..|+..|..-+.+...|..+...|..+|.++..
T Consensus         4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   53 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED   53 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45899999999999999999999999999999999999999999998874

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=92.22  E-value=2.5  Score=30.18  Aligned_cols=47  Identities=19%  Similarity=0.236  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHhhhh
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNS--------LLRAENGSMKQKLSAFS  121 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~--------~L~~EN~~Lk~rL~~l~  121 (168)
                      +-|.|..+..|..||-.|.-+|-+|++...        .+..+|-+||..+.+|.
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~   56 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLK   56 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence            357888999999999999999988876544        34455556655554444

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=92.12  E-value=2.5  Score=41.96  Aligned_cols=71  Identities=13%  Similarity=0.165  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEA-QYEELKRERQILKQLCI  146 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda-~~e~L~~Ev~rLk~~~~  146 (168)
                      +.+|..++..++.||+.|..++..+..+...-..| .++-.|-.......++-.+ -.-.|++|++|||.++.
T Consensus       136 ~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E-~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~r  207 (769)
T PF05911_consen  136 IEDLMARLESTEKENSSLKYELHVLSKELEIRNEE-REYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVR  207 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555555555555555555444333222 3443333333333333322 25679999999999875

The function of this family is unknown.

>PRK02793 phi X174 lysis protein; Provisional

Probab=92.10  E-value=1.3  Score=31.31  Aligned_cols=50  Identities=14%  Similarity=0.165  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      ..|.+||.++..++.-+.+|+.-|..-+.+...|..+-..|..+|.++..
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   57 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP   57 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            46889999999999999999999988888888888888888888877654

>PRK00295 hypothetical protein; Provisional

Probab=92.04  E-value=1.2  Score=31.06  Aligned_cols=47  Identities=6%  Similarity=0.085  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS  121 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~  121 (168)
                      |.+||.++..++.-+..|+..|..-+.+...|..+-..|..+|.++.
T Consensus         7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999988888888888888888887765

>PRK02119 hypothetical protein; Provisional

Probab=91.91  E-value=1.2  Score=31.61  Aligned_cols=49  Identities=12%  Similarity=0.122  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677           73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS  121 (168)
Q Consensus        73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~  121 (168)
                      .-|.+||.++..++.-+.+|+.-|..-+++...|..+...|..+|.++.
T Consensus         9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3578889999888888888888888888888888888888888887765

>PRK00736 hypothetical protein; Provisional

Probab=91.65  E-value=1.6  Score=30.49  Aligned_cols=48  Identities=10%  Similarity=0.163  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677           74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS  121 (168)
Q Consensus        74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~  121 (168)
                      .|.+||.++..++.-+..|+..|..-+.+...|..+-..|..||.++.
T Consensus         6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00736          6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            499999999999999999999998888888888888888888887754

>PRK04325 hypothetical protein; Provisional

Probab=91.57  E-value=1.6  Score=31.01  Aligned_cols=47  Identities=15%  Similarity=0.158  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS  121 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~  121 (168)
                      |.+||.++..++.-+..|+.-|..-+.+...|..+-..|..||.++.
T Consensus        11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~   57 (74)
T PRK04325         11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN   57 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999888888888888888888887765

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.55  E-value=5.3  Score=30.93  Aligned_cols=43  Identities=23%  Similarity=0.197  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677          107 RAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIMYN  149 (168)
Q Consensus       107 ~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~~~  149 (168)
                      ..+-.+|..|...+-+-.-=|.=..++|+..|.-||.+|..|-
T Consensus        74 ~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi  116 (120)
T PF12325_consen   74 EQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQI  116 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444334455668999999999999998743

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK04406 hypothetical protein; Provisional

Probab=91.53  E-value=1.6  Score=31.21  Aligned_cols=49  Identities=8%  Similarity=0.094  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677           73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS  121 (168)
Q Consensus        73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~  121 (168)
                      ..|.+||.++..++.-+..|+..|..-+.+...|..+-..|..+|.++.
T Consensus        11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   59 (75)
T PRK04406         11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD   59 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3578888888888888888888888888888888888888888877654

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=91.47  E-value=0.42  Score=46.07  Aligned_cols=62  Identities=32%  Similarity=0.387  Sum_probs=49.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           54 LRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        54 ~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      +||-=+||.+|++-|-||+--|..||..|..|+.+-..|..+       ...+..+-.+++++|..|-+
T Consensus       492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E-------r~~~d~~L~~~kqqls~L~~  553 (604)
T KOG3863|consen  492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE-------RDELDSTLGVMKQQLSELYQ  553 (604)
T ss_pred             cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            344446899999999999999999999999999888765443       33344677888899888875

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=91.32  E-value=3.5  Score=28.97  Aligned_cols=61  Identities=16%  Similarity=0.171  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC  145 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~  145 (168)
                      +..||.+|..|=.-...|..+...|..+...+..|+..|..+.....          ..+++=|.||+.+-
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar----------~rvEamI~RLk~le   62 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR----------QKVEAMITRLKALE   62 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhhhc
Confidence            34566666655555555555544454444555555554444443332          24455577777663

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=90.60  E-value=3.3  Score=33.90  Aligned_cols=67  Identities=22%  Similarity=0.299  Sum_probs=44.7

Q ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677           73 HYIMQLET---EVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI  146 (168)
Q Consensus        73 ~yi~eLE~---kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~  146 (168)
                      .|+..|..   ....++.||..|..++..|+..+..|..||..|..++..+..       -+++|-.=+.|-|.++.
T Consensus        87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e-------DY~~L~~Im~RARkl~~  156 (161)
T TIGR02894        87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEE-------DYQTLIDIMDRARKLAV  156 (161)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence            44444443   356667777777777777777777777777777777766665       56666666666665543

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=90.57  E-value=6.4  Score=38.88  Aligned_cols=93  Identities=29%  Similarity=0.272  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677           49 LEAKKLRRVLASRQYSQKYRLKQL-----HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE  123 (168)
Q Consensus        49 ~D~Kr~KRilaNReSA~RSR~RK~-----~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~  123 (168)
                      .|-|-.|-.++ |..|-..|+-+.     .-.+.||.+...|..|..++..+=..+-++|..|..||-.|..++..|.+.
T Consensus        41 ~elk~~~~~~~-~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~s  119 (717)
T PF09730_consen   41 NELKQLRQELS-NVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQS  119 (717)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            34555444444 344444444332     235666777777777777777777778889999999999999999988874


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 035677          124 LTFKEAQYEELKRERQILKQLCI  146 (168)
Q Consensus       124 ~~lkda~~e~L~~Ev~rLk~~~~  146 (168)
                          .+++|.++-||.||.-=..
T Consensus       120 ----QvefE~~Khei~rl~Ee~~  138 (717)
T PF09730_consen  120 ----QVEFEGLKHEIKRLEEEIE  138 (717)
T ss_pred             ----HHHHHHHHHHHHHHHHHHH
Confidence                3677777777777765443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=90.09  E-value=1  Score=29.33  Aligned_cols=38  Identities=11%  Similarity=0.246  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           85 LQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        85 Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      |+.+-..|....+.|..++..|..||..|+..+..|..
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~   40 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE   40 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555555555555555555443

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.06  E-value=8.4  Score=34.01  Aligned_cols=47  Identities=19%  Similarity=0.280  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS  121 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~  121 (168)
                      +.+++.++..|+.|...+..++..++.+...|..|-..|...+..+.
T Consensus        45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~   91 (314)
T PF04111_consen   45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD   91 (314)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666666666666666665555543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=90.00  E-value=2.7  Score=39.54  Aligned_cols=41  Identities=24%  Similarity=0.355  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           82 VKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        82 V~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      |..|-.+..++..++..+..+|..|..||..|+.|...+.+
T Consensus        61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~  101 (472)
T TIGR03752        61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ  101 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            33444444555556666666666777777777776665554

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=89.79  E-value=4.6  Score=31.95  Aligned_cols=72  Identities=22%  Similarity=0.262  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHH
Q 035677           73 HYIMQLETEVKALQAEVAIMSPRI--KYADCQNSLLRAENGSMKQKLSAFSGE-LTFKEAQYEELKRERQILKQL  144 (168)
Q Consensus        73 ~yi~eLE~kV~~Lq~En~~L~~~l--~~l~~~~~~L~~EN~~Lk~rL~~l~q~-~~lkda~~e~L~~Ev~rLk~~  144 (168)
                      .-+.+|...+..|..+...|...+  ..+......|..|+..|..+|..|... ..+....-+.+..+...++..
T Consensus        86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~  160 (169)
T PF07106_consen   86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKE  160 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            345556666666666666655543  456677788888999999999887764 333444555555555544443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=89.79  E-value=6.3  Score=28.86  Aligned_cols=71  Identities=17%  Similarity=0.253  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677           51 AKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS  121 (168)
Q Consensus        51 ~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~  121 (168)
                      .+++.+.|.+=+++--.|.-+..-.++|+.+|+.|....+.|..++......+..|..-|.++..+|....
T Consensus        10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~   80 (89)
T PF13747_consen   10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI   80 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666667777777666666666679999999999999999999999999999999999999999998644

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=89.69  E-value=6.6  Score=28.99  Aligned_cols=58  Identities=19%  Similarity=0.197  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677           84 ALQAEVAIMSPRIKYADC------QNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ  143 (168)
Q Consensus        84 ~Lq~En~~L~~~l~~l~~------~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~  143 (168)
                      .+..++..|..+|..|+.      +-+...+||-.|+..+..+..-.  .....|.+-.||..|+.
T Consensus        21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~   84 (86)
T PF12711_consen   21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRD   84 (86)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHh
Confidence            334444555555554443      22445566666666666555432  44566666667766654

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.46  E-value=2  Score=34.94  Aligned_cols=44  Identities=23%  Similarity=0.270  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677           78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS  121 (168)
Q Consensus        78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~  121 (168)
                      .+..+..|+.++..|..++..+..+......-+..|+..+.+|.
T Consensus       114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~  157 (194)
T PF08614_consen  114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ  157 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK00846 hypothetical protein; Provisional

Probab=89.29  E-value=3.2  Score=30.01  Aligned_cols=49  Identities=12%  Similarity=0.091  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677           73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS  121 (168)
Q Consensus        73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~  121 (168)
                      +.|.+||.++...+.-+..|...|...+.....|..+-..|..+|.++.
T Consensus        13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~   61 (77)
T PRK00846         13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   61 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5688999999999988888888888888888888888788888887765

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.59  E-value=2.4  Score=30.65  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 035677           77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQ  115 (168)
Q Consensus        77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~  115 (168)
                      =|..+|..|..+|..|..+...+++....|..||..||.
T Consensus        22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~   60 (79)
T COG3074          22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE   60 (79)
T ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555555553

>PRK11637 AmiB activator; Provisional

Probab=88.25  E-value=11  Score=34.04  Aligned_cols=7  Identities=14%  Similarity=-0.092  Sum_probs=2.9

Q ss_pred             HHHHHHH
Q 035677          140 ILKQLCI  146 (168)
Q Consensus       140 rLk~~~~  146 (168)
                      +++.+|.
T Consensus       129 rlra~Y~  135 (428)
T PRK11637        129 QLDAAFR  135 (428)
T ss_pred             HHHHHHH
Confidence            3444443

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=88.15  E-value=3.2  Score=39.11  Aligned_cols=46  Identities=11%  Similarity=0.233  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677           74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA  119 (168)
Q Consensus        74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~  119 (168)
                      -.++||.++..|+.|...++.+...+++....|..||..|+.++.+
T Consensus        77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a  122 (475)
T PRK13729         77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA  122 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            6788999999999888888888888888888888888888888844

>PRK11637 AmiB activator; Provisional

Probab=87.96  E-value=15  Score=33.13  Aligned_cols=42  Identities=12%  Similarity=0.121  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQK  116 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~r  116 (168)
                      +.+|+.++..++.+...+..+|..++.+...+..+-..++.+
T Consensus        77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~  118 (428)
T PRK11637         77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ  118 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=87.70  E-value=11  Score=29.13  Aligned_cols=36  Identities=28%  Similarity=0.252  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 035677           78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSM  113 (168)
Q Consensus        78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~L  113 (168)
                      +|.++..|+.++..|..+-+.+..+...|..+|.++
T Consensus        28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~   63 (120)
T PF12325_consen   28 LEGELASLQEELARLEAERDELREEIVKLMEENEEL   63 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=87.58  E-value=2.5  Score=31.23  Aligned_cols=65  Identities=18%  Similarity=0.236  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677           80 TEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC  145 (168)
Q Consensus        80 ~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~  145 (168)
                      .++..|+.-.......-.++..++..|..|...|+.++.- .....-..++|-.|..|+.||+..+
T Consensus         3 dkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~-nPevtr~A~EN~rL~ee~rrl~~f~   67 (86)
T PF12711_consen    3 DKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEH-NPEVTRFAMENIRLREELRRLQSFY   67 (86)
T ss_pred             hHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555554444455566777778888888888888753 2233445578999999999999987

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]

Probab=87.32  E-value=3.9  Score=37.31  Aligned_cols=66  Identities=18%  Similarity=0.217  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM  147 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~  147 (168)
                      +.++|.+++.-..-|+.|-.       +..-|.=+-.-||.-|..+..++....-+++.+.+|+.|+|..+-.
T Consensus       121 v~EveekykkaMvsnaQLDN-------EKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~  186 (405)
T KOG2010|consen  121 VSEVEEKYKKAMVSNAQLDN-------EKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSV  186 (405)
T ss_pred             hHHHHHHHHHHHHHHHhhcc-------cccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777777766665543       3333444555667777777777777778999999999999987654

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=87.28  E-value=8.4  Score=32.39  Aligned_cols=44  Identities=18%  Similarity=0.232  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677           76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA  119 (168)
Q Consensus        76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~  119 (168)
                      .-|..+|..|+.+|..+....+-+......|.+++..|+-+|-.
T Consensus        98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~  141 (193)
T PF14662_consen   98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE  141 (193)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence            34667777777777777777777777788887788888777733

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.17  E-value=16  Score=32.25  Aligned_cols=73  Identities=21%  Similarity=0.245  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677           71 QLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ  143 (168)
Q Consensus        71 K~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~  143 (168)
                      ..+-+.+||.+...|..|...+..+...+..+-...-.+.+.+...+..+..+..--.+.++.+...+++|+.
T Consensus        62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen   62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444445555555555555555554444444444444444555555555555444444455555555555543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules

Probab=87.16  E-value=8.2  Score=28.88  Aligned_cols=66  Identities=18%  Similarity=0.199  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677           81 EVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM  147 (168)
Q Consensus        81 kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~  147 (168)
                      .+..++.+...+..+|..+..++..+...|.+|-..+..+......... ...+..++..++.-+..
T Consensus         4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~   69 (106)
T PF05837_consen    4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKK   69 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHH
Confidence            4567778888888888888888888888888888888887776555554 55556666665555543

Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=86.75  E-value=11  Score=35.68  Aligned_cols=64  Identities=25%  Similarity=0.303  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677           77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA-FSGELTFKEAQYEELKRERQILKQLCIM  147 (168)
Q Consensus        77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~-l~q~~~lkda~~e~L~~Ev~rLk~~~~~  147 (168)
                      +++.++..|..+|..|       ..+|..|+.....+.++++. +.....=-+...+.|+.|++.|+.+..+
T Consensus        70 ~~r~~~~~l~~~N~~l-------~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~  134 (472)
T TIGR03752        70 ELRKRLAKLISENEAL-------KAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQ  134 (472)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444       44444455555555555543 3222222233566777777777766654

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=86.64  E-value=15  Score=31.27  Aligned_cols=57  Identities=21%  Similarity=0.093  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677           91 IMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM  147 (168)
Q Consensus        91 ~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~  147 (168)
                      .+..++......+..+..+...|+..+....-...--+...+.|+.|+..|+..+..
T Consensus        86 ~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee  142 (312)
T PF00038_consen   86 DLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE  142 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence            333333333444455555556666555554444444455677778888777777643

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=86.56  E-value=15  Score=32.69  Aligned_cols=75  Identities=19%  Similarity=0.225  Sum_probs=49.2

Q ss_pred             chhhhhhHHHHHHHHHhhH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677           44 TEDRELEAKKLRRVLASRQ-----YSQKYRLKQ-LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL  117 (168)
Q Consensus        44 ~~~~~~D~Kr~KRilaNRe-----SA~RSR~RK-~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL  117 (168)
                      .....+++|-.|=|++|-+     ++.-..+-- +.-+++||..+..|+.++..-...+..+.+.+..|..+-..|+..|
T Consensus        84 ~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L  163 (302)
T PF09738_consen   84 DSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL  163 (302)
T ss_pred             HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556788999899998742     333333333 3346666777777777666666666666777777777777777666


Q ss_pred             h
Q 035677          118 S  118 (168)
Q Consensus       118 ~  118 (168)
                      .
T Consensus       164 ~  164 (302)
T PF09738_consen  164 K  164 (302)
T ss_pred             H
Confidence            5

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=86.55  E-value=7.1  Score=34.92  Aligned_cols=55  Identities=25%  Similarity=0.230  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677           84 ALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC  145 (168)
Q Consensus        84 ~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~  145 (168)
                      ..+.|++.|..+|..+++.+..+..||.+|.+.|.+...       -+..|..|+.-|+-.|
T Consensus       231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske-------~Q~~L~aEL~elqdkY  285 (306)
T PF04849_consen  231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKE-------SQRQLQAELQELQDKY  285 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            445678888888899999999999999999999876543       3344666666666554

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=86.50  E-value=17  Score=30.05  Aligned_cols=85  Identities=19%  Similarity=0.153  Sum_probs=51.8

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH
Q 035677           49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKE  128 (168)
Q Consensus        49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkd  128 (168)
                      .|-+-++..|...-|-+-.+...+.+...+|.++..-..+...+...|              .+|..+|..|..++..-+
T Consensus        86 FnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i--------------~~Le~ki~el~~~~~~~~  151 (190)
T PF05266_consen   86 FNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEI--------------KELEMKILELQRQAAKLK  151 (190)
T ss_pred             CccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence            456666667777888888888888888888888776644444444433              344444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 035677          129 AQYEELKRERQILKQLCIM  147 (168)
Q Consensus       129 a~~e~L~~Ev~rLk~~~~~  147 (168)
                      ...++..+||.+|+.-+..
T Consensus       152 ~~ke~~~~ei~~lks~~~~  170 (190)
T PF05266_consen  152 EKKEAKDKEISRLKSEAEA  170 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4555555566555555444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=86.38  E-value=32  Score=33.10  Aligned_cols=56  Identities=16%  Similarity=0.140  Sum_probs=23.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 035677           57 VLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGS  112 (168)
Q Consensus        57 ilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~  112 (168)
                      ++.-..........-...+++|+..+...+.++..|..+...+......|..|+..
T Consensus       155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~  210 (546)
T PF07888_consen  155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERES  210 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444333333333333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=86.03  E-value=5.4  Score=43.06  Aligned_cols=67  Identities=24%  Similarity=0.245  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHHH
Q 035677           79 ETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE-LTFKEAQYEELKRERQILKQLC  145 (168)
Q Consensus        79 E~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~-~~lkda~~e~L~~Ev~rLk~~~  145 (168)
                      +..+.-|+.++.++.+++.....+...|..++...|+|-+.|... ...--..++.|..||.+|+.-.
T Consensus      1256 ~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el 1323 (1822)
T KOG4674|consen 1256 NFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEEL 1323 (1822)
T ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence            334445555666777788888888888888888888888776654 3333355666666666665543

>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]

Probab=85.62  E-value=3  Score=32.04  Aligned_cols=46  Identities=28%  Similarity=0.307  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677           78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE  123 (168)
Q Consensus        78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~  123 (168)
                      |-.+|-.||.-...|+.++....+++..|++||..|-+=|+.|...
T Consensus        61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa  106 (120)
T KOG3650|consen   61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA  106 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence            4567888888899999999999999999999999999988776543

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=85.15  E-value=23  Score=30.19  Aligned_cols=67  Identities=22%  Similarity=0.292  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHH
Q 035677           81 EVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTF----KEAQYEELKRERQILKQLCIM  147 (168)
Q Consensus        81 kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~l----kda~~e~L~~Ev~rLk~~~~~  147 (168)
                      .+..+..|+..+...+..+..+...|...|..|..+|..+......    .+.....+..|+..||.-...
T Consensus       210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~  280 (312)
T PF00038_consen  210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMAR  280 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence            3455666777777777788888888888888888888776654333    345566778888888776654

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.69  E-value=18  Score=31.82  Aligned_cols=50  Identities=18%  Similarity=0.249  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      .-+.+++..+..++.+...|-.+|..++.....+..++.+++..|..+..
T Consensus        38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~   87 (265)
T COG3883          38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK   87 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555555555555555555555443

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=84.28  E-value=11  Score=28.25  Aligned_cols=59  Identities=14%  Similarity=0.246  Sum_probs=36.4

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           64 SQKYRLKQL-HYIMQLETEVKALQAEVAIM--SPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        64 A~RSR~RK~-~yi~eLE~kV~~Lq~En~~L--~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      |.+++.-+. .-+++.+.++..++.+...|  +..+..|+-.-..++.+-..|..+|..+..
T Consensus        32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~   93 (106)
T PF10805_consen   32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH   93 (106)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            334443333 33445566666666666666  566666666666677777777777777654

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=83.98  E-value=13  Score=36.00  Aligned_cols=47  Identities=15%  Similarity=0.373  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677           72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS  118 (168)
Q Consensus        72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~  118 (168)
                      +.|+.+++.+-..+......|..++...+.++..|..+|..|+.++.
T Consensus       279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56888888888888888888888888888888888888888887664

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=83.98  E-value=37  Score=31.74  Aligned_cols=73  Identities=19%  Similarity=0.226  Sum_probs=53.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 035677           52 KKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGEL  124 (168)
Q Consensus        52 Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~  124 (168)
                      ++++-+-++=+.-.++.-....-...|+..+..++.++..+..+|.....+...+...+..+..+|..|+.+.
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            6666665555555555556667778888888888888888888888877777777777777777777666554

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=83.79  E-value=12  Score=25.71  Aligned_cols=43  Identities=23%  Similarity=0.342  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL  117 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL  117 (168)
                      |++|...|+.|...+..|+..|..+..+-.....|-.---+||
T Consensus         5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl   47 (56)
T PF04728_consen    5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL   47 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666666666666555555544444433333333333

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=83.78  E-value=32  Score=30.87  Aligned_cols=40  Identities=20%  Similarity=0.376  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 035677           76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQ  115 (168)
Q Consensus        76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~  115 (168)
                      ++|...+..|+.++..|..++......+..|..+|..|+.
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~   62 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALRE   62 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555556666666655555555555555555555553

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=83.58  E-value=20  Score=28.41  Aligned_cols=48  Identities=19%  Similarity=0.272  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      +.+|+.+..+++....++...+..+......+..+....+.++.++..
T Consensus        90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~  137 (191)
T PF04156_consen   90 LQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDE  137 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444443333333444444444333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK09039 hypothetical protein; Validated

Probab=83.51  E-value=15  Score=32.75  Aligned_cols=41  Identities=15%  Similarity=0.118  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677           83 KALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE  123 (168)
Q Consensus        83 ~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~  123 (168)
                      ..+..+.++..++|..|..+...|+.+...|...|.+.+..
T Consensus       126 ~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~  166 (343)
T PRK09039        126 DSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR  166 (343)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444555555555555554444444444433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=83.27  E-value=39  Score=32.54  Aligned_cols=58  Identities=21%  Similarity=0.242  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 035677           62 QYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSA  119 (168)
Q Consensus        62 eSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~  119 (168)
                      +-+.+-+.-=++-...|+.++..|+.++..|...+......+..|..++..+......
T Consensus       146 E~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~  203 (546)
T PF07888_consen  146 EECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEE  203 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444455555555555555555555555555555555555554444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK09039 hypothetical protein; Validated

Probab=83.16  E-value=34  Score=30.58  Aligned_cols=65  Identities=20%  Similarity=0.164  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 035677           77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQIL  141 (168)
Q Consensus        77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rL  141 (168)
                      +++.++..|..+........+....+-..|..+-..|+.+|.+|+......+.........|..|
T Consensus       113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L  177 (343)
T PRK09039        113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL  177 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555554444443333333333333

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=82.87  E-value=8.6  Score=29.16  Aligned_cols=50  Identities=18%  Similarity=0.155  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035677           91 IMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCIM  147 (168)
Q Consensus        91 ~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~~  147 (168)
                      .|...|..++.+...|..+-.+||..+..|..       +|.+|+-|-++||.....
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~E-------EN~~L~~EN~~Lr~~l~~   54 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLE-------ENARLRIENEHLRERLEE   54 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666777777766665       666677777777766654

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=82.50  E-value=0.054  Score=49.04  Aligned_cols=63  Identities=22%  Similarity=0.174  Sum_probs=54.7

Q ss_pred             hhhhhhHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHH
Q 035677           45 EDRELEAKKLRRVLASRQYSQK---YRLKQLHYIMQLETEVKALQ-AEVAIMSPRIKYADCQNSLLR  107 (168)
Q Consensus        45 ~~~~~D~Kr~KRilaNReSA~R---SR~RK~~yi~eLE~kV~~Lq-~En~~L~~~l~~l~~~~~~L~  107 (168)
                      ...+.+.|++.|...|+..|.+   +|.|+..|.+.|..+|..|+ .++..+..+|..|+.+...|.
T Consensus       147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~  213 (395)
T KOG1414|consen  147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLE  213 (395)
T ss_pred             CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHH
Confidence            3456789999999999999999   99999999999999999999 888888888887776666654

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=82.47  E-value=23  Score=33.38  Aligned_cols=76  Identities=21%  Similarity=0.145  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhH---------
Q 035677           70 KQLHYIMQLETEVKALQA--------------EVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTF---------  126 (168)
Q Consensus        70 RK~~yi~eLE~kV~~Lq~--------------En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~l---------  126 (168)
                      =|.+|-+++|+++..-+.              +...+.-++..|.+++..--.||..|-+.+.+-.+-..-         
T Consensus       390 MKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELn  469 (593)
T KOG4807|consen  390 MKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELN  469 (593)
T ss_pred             HHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            377888999888754432              333444555566666665556777777666543332111         


Q ss_pred             --HHHHHHHHHHHHHHHHHHH
Q 035677          127 --KEAQYEELKRERQILKQLC  145 (168)
Q Consensus       127 --kda~~e~L~~Ev~rLk~~~  145 (168)
                        ..-++..|.+||.|||.+.
T Consensus       470 aHNQELnnRLaaEItrLRtll  490 (593)
T KOG4807|consen  470 AHNQELNNRLAAEITRLRTLL  490 (593)
T ss_pred             HHHHHHhhHHHHHHHHHHHHh
Confidence              1134667788888888775

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=82.43  E-value=15  Score=35.92  Aligned_cols=70  Identities=20%  Similarity=0.253  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH---HHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKE---AQYEELKRERQILKQL  144 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkd---a~~e~L~~Ev~rLk~~  144 (168)
                      |..|..++..|..+...+...+..+...+.....++..+...|.++.....-+.   .++..|..+|+.||.-
T Consensus       243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn  315 (670)
T KOG0239|consen  243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN  315 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            666777777777777777777777777777777777777777777777666666   6777777788777754

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=81.85  E-value=22  Score=28.24  Aligned_cols=70  Identities=20%  Similarity=0.286  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH-----HHHHHHHHHHHHHHHHHH
Q 035677           77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKE-----AQYEELKRERQILKQLCI  146 (168)
Q Consensus        77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkd-----a~~e~L~~Ev~rLk~~~~  146 (168)
                      .+...+...+.....+...+..+..+...+...|..|+.+...+.-...+.|     ...+.++.+|..|+..+.
T Consensus        95 ~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~  169 (177)
T PF13870_consen   95 RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVE  169 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666667777777888888889999999999999988877777766     334556666666665543

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=81.83  E-value=2.7  Score=34.41  Aligned_cols=53  Identities=19%  Similarity=0.290  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQY  131 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~  131 (168)
                      ++|+|.+.++-=..|+-|..+|    .+...|+.++--||..+..|.++..+++-+.
T Consensus         2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~~   54 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKLR   54 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6899999998888888888888    3455677777777777777777776665543

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF15294 Leu_zip: Leucine zipper

Probab=81.77  E-value=5.4  Score=35.18  Aligned_cols=45  Identities=22%  Similarity=0.314  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           78 LETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        78 LE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      |...+..|+.||..|..++..++.++....-|...|..+|..+..
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667888899999999999999999998888888888888877665

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=81.20  E-value=16  Score=29.32  Aligned_cols=46  Identities=17%  Similarity=0.329  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhhhhh
Q 035677           77 QLETEVKALQAEVAIMSPRIKYAD-CQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        77 eLE~kV~~Lq~En~~L~~~l~~l~-~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      ++|.....+.+..++|..++..+. .+...|+.++..|+..+..|.+
T Consensus        48 d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~   94 (177)
T PF07798_consen   48 DLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ   94 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444445555555555554432 3444555555555555554443

>PF14817 HAUS5: HAUS augmin-like complex subunit 5

Probab=80.47  E-value=43  Score=32.72  Aligned_cols=80  Identities=24%  Similarity=0.252  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677           67 YRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI  146 (168)
Q Consensus        67 SR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~  146 (168)
                      +++--.+.-.+|+.+|..|+.++..+..+|..++.+...-.++-.....++........|-+|.......+...|+.-..
T Consensus        73 ~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~  152 (632)
T PF14817_consen   73 SRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTK  152 (632)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445678999999999999999999999998888777777777778888887777778887777777776666554

>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins

Probab=80.44  E-value=11  Score=33.66  Aligned_cols=55  Identities=24%  Similarity=0.345  Sum_probs=42.9

Q ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           68 RLKQLH----YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        68 R~RK~~----yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      |.||+.    ||=.+|.+++.-..|.-.|..+++.|++++..++..-.+.+..|..|..
T Consensus        55 rvrklh~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre  113 (389)
T PF06216_consen   55 RVRKLHIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE  113 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            456665    4455788888888888889999999988888888888888887777654

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.6
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.33
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.27
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.16
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.15
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.97
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.88
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.27
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.23
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.06
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.95
2wt7_B	90	Transcription factor MAFB; transcription, transcri	97.87
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.89
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	95.19
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	94.94
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	94.22
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	93.84
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	91.79
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	91.52
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	91.13
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	90.71
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	90.43
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	90.36
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	90.06
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	89.74
3m48_A	33	General control protein GCN4; leucine zipper, synt	87.84
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	87.41
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	86.97
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	86.75
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	86.41
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	86.39
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	85.88
1fmh_A	33	General control protein GCN4; coiled coil, leucine	85.76
3swf_A	74	CGMP-gated cation channel alpha-1; coiled-coil, as	85.68
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	85.17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	84.97
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	84.81
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	84.1
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	83.76
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	83.32
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	82.68
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	82.44
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	82.35
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	82.34
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	82.17
2wt7_B	90	Transcription factor MAFB; transcription, transcri	82.09
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	81.77
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	81.53
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	81.0
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	80.98
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	80.8
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	80.78
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	80.26

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.60  E-value=1.5e-15  Score=101.71  Aligned_cols=52  Identities=21%  Similarity=0.293  Sum_probs=48.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677           52 KKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQN  103 (168)
Q Consensus        52 Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~  103 (168)
                      ||.+|+++||+||++||.||++|+++||.+|..|+.||..|..++..|+..+
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5889999999999999999999999999999999999999999988887654

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.33  E-value=7.1e-12  Score=85.47  Aligned_cols=57  Identities=18%  Similarity=0.152  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677           51 AKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLR  107 (168)
Q Consensus        51 ~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~  107 (168)
                      +||.+|+..||++|+|||.||+.|+++|+.+|..|+.+|..|..+|..|..+...|.
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk   57 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE   57 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999987776655554

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.27  E-value=2e-11  Score=82.44  Aligned_cols=55  Identities=15%  Similarity=0.199  Sum_probs=49.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 035677           52 KKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLL  106 (168)
Q Consensus        52 Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L  106 (168)
                      ||.+|+..||++|++||.||+.|+++||.+|..|..+|..|..+|..|..+...|
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L   55 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL   55 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999998777554444

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.16  E-value=7.6e-11  Score=80.71  Aligned_cols=53  Identities=17%  Similarity=0.249  Sum_probs=42.4

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677           49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQ  102 (168)
Q Consensus        49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~  102 (168)
                      .|+...||. .||+||+|||.||+.|+++||.+|..|..+|..|..+|..|..+
T Consensus         7 ~d~~~~KR~-rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~   59 (63)
T 2dgc_A            7 SDPAALKRA-RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL   59 (63)
T ss_dssp             ----CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455544443 49999999999999999999999999999999988888777654

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.15  E-value=1.1e-10  Score=79.17  Aligned_cols=55  Identities=27%  Similarity=0.311  Sum_probs=47.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 035677           52 KKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLL  106 (168)
Q Consensus        52 Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L  106 (168)
                      |+.+|...||++|++||.||+.|+++||.+|..|..+|..|..+|..|..++..|
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L   55 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL   55 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777899999999999999999999999999999999999998777654443

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.97  E-value=8.2e-10  Score=77.25  Aligned_cols=64  Identities=17%  Similarity=0.135  Sum_probs=53.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035677           51 AKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMK  114 (168)
Q Consensus        51 ~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk  114 (168)
                      +...||...||.|++..|.||.+||.+||.+|..|+.++..|..+...|..+...|.+||..|+
T Consensus         7 ~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E            7 EPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3346788899999999999999999999999999999988877777777777777777766653

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.88  E-value=5.3e-09  Score=71.31  Aligned_cols=56  Identities=21%  Similarity=0.269  Sum_probs=45.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677           52 KKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLR  107 (168)
Q Consensus        52 Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~  107 (168)
                      |+.++...||.+|+|+|.||+.++++|+.++..|..+|..|..+|+.|+.++..|.
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk   57 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK   57 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777889999999999999999999999999999999999999988876655554

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.27  E-value=5.6e-06  Score=58.79  Aligned_cols=57  Identities=18%  Similarity=0.057  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 035677           50 EAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLL  106 (168)
Q Consensus        50 D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L  106 (168)
                      |+.-..|-..|.++|+|||.+++.-..+++.+|..|+.||..|..+|..|..+...|
T Consensus        13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L   69 (78)
T 1gu4_A           13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL   69 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455899999999999999999999999999999999998888776555444

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.23  E-value=8.1e-06  Score=59.07  Aligned_cols=58  Identities=17%  Similarity=0.045  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 035677           49 LEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLL  106 (168)
Q Consensus        49 ~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L  106 (168)
                      .|++-..|-..|.++|+|||.+++.-..+++.+|..|+.||..|..+|..|..+...|
T Consensus        12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L   69 (87)
T 1hjb_A           12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL   69 (87)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555556999999999999999999999999999999988888888665544433

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.06  E-value=1.8e-07  Score=70.18  Aligned_cols=50  Identities=28%  Similarity=0.441  Sum_probs=41.4

Q ss_pred             chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677           44 TEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMS   93 (168)
Q Consensus        44 ~~~~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~   93 (168)
                      .......-|..||-++||.+|+.+|.||+..+++||.++..|+.+...|.
T Consensus        29 s~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~   78 (107)
T 3a5t_A           29 SKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLA   78 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTT
T ss_pred             CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455678999999999999999999999999999988877776554443

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.95  E-value=1.6e-05  Score=50.43  Aligned_cols=36  Identities=28%  Similarity=0.454  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 035677           72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLR  107 (168)
Q Consensus        72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~  107 (168)
                      ++|+.+||.++..|+..|++|..+|+.|++++.+|+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR   37 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR   37 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            579999999999999999999999999998777765

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=97.87  E-value=0.00015  Score=52.77  Aligned_cols=70  Identities=29%  Similarity=0.383  Sum_probs=55.3

Q ss_pred             chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035677           44 TEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAF  120 (168)
Q Consensus        44 ~~~~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l  120 (168)
                      +....++-|-.||-+.||.+|+-.|-||...+.+||..+..|+.+...|..++.       .+..|-..+|+++.+|
T Consensus        19 s~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~-------~~~~e~d~~k~k~~~L   88 (90)
T 2wt7_B           19 TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVS-------RLARERDAYKVKSEKL   88 (90)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence            344567889999999999999999999999999999998888877666655544       4445667777777665

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.89  E-value=0.14  Score=36.41  Aligned_cols=58  Identities=16%  Similarity=0.234  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 035677           74 YIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRER  138 (168)
Q Consensus        74 yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev  138 (168)
                      -++.||.+|+.+-..++-|.-+|..|..++..|..++.+++..-..|..       .++.|+.|.
T Consensus         7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~-------en~qLk~E~   64 (81)
T 2jee_A            7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER-------ENNHLKEQQ   64 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHH
Confidence            4678888888777777666666666666666666666665555444443       555555553

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=95.19  E-value=0.24  Score=35.50  Aligned_cols=64  Identities=14%  Similarity=0.265  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035677           80 TEVKALQAEVAIMSPRIKYADCQ-----NSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQ  143 (168)
Q Consensus        80 ~kV~~Lq~En~~L~~~l~~l~~~-----~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~  143 (168)
                      .+|..|+.+|..|..+|..+...     ......+-..|+.+|..+..+..--++....|..++.+||.
T Consensus        23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~   91 (93)
T 3s4r_A           23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE   91 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47888888888888888777643     23456677788888888888777667777777777777764

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=94.94  E-value=0.34  Score=36.46  Aligned_cols=12  Identities=25%  Similarity=0.437  Sum_probs=0.0

Q ss_pred             hhhhhhhhhhcC
Q 035677          157 LVNNLNQRFNKM  168 (168)
Q Consensus       157 ~~~~~~~~~~~~  168 (168)
                      ..++.-.|||||
T Consensus       100 kAqa~Eerf~KL  111 (120)
T 3i00_A          100 KAQANEQRYSKL  111 (120)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHHH
Confidence            334556677765

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=94.22  E-value=0.24  Score=33.51  Aligned_cols=41  Identities=22%  Similarity=0.241  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQ  115 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~  115 (168)
                      +..-|.+|++|..-|..|+.++..++.....|.+||..|+.
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            45568999999999999999999999999999999999873

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=91.79  E-value=1.6  Score=33.32  Aligned_cols=51  Identities=10%  Similarity=0.115  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           72 LHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        72 ~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      +...+.|+..+..+..|+..|..++..++..+..+..++..|+.++.+|..
T Consensus        74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~  124 (138)
T 3hnw_A           74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK  124 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566666666666666666666666666666666666666666555554

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=91.52  E-value=0.13  Score=37.38  Aligned_cols=38  Identities=13%  Similarity=0.119  Sum_probs=30.6

Q ss_pred             chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 035677           44 TEDRELEAKKLRRVLASRQYSQKYRLKQLHYIMQLETE   81 (168)
Q Consensus        44 ~~~~~~D~Kr~KRilaNReSA~RSR~RK~~yi~eLE~k   81 (168)
                      .+.....-|.+||-..||..|++.|-||..-++.|+..
T Consensus        54 s~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~~   91 (92)
T 1skn_P           54 SEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSHY   91 (92)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred             CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence            44455678999999999999999999999999888753

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=91.13  E-value=0.4  Score=33.86  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 035677          108 AENGSMKQKLSAFSGELTFKEAQYEELKRERQIL  141 (168)
Q Consensus       108 ~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rL  141 (168)
                      .+|..|..++..+++...=.....+.++.|+.++
T Consensus        20 ~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l   53 (79)
T 3cvf_A           20 TRNAELEHQLRAMERSLEEARAERERARAEVGRA   53 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444443333333444444444443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=90.71  E-value=3.3  Score=29.30  Aligned_cols=14  Identities=57%  Similarity=0.698  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHH
Q 035677          130 QYEELKRERQILKQ  143 (168)
Q Consensus       130 ~~e~L~~Ev~rLk~  143 (168)
                      ..+.|..|+++|+.
T Consensus        49 ~~~~L~~en~qLk~   62 (81)
T 2jee_A           49 QREELERENNHLKE   62 (81)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            34445555555543

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=90.43  E-value=1.8  Score=28.36  Aligned_cols=44  Identities=25%  Similarity=0.265  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLS  118 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~  118 (168)
                      -++|-++|..|..||+.|..++..-..+...|..|-..+|.-+.
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk   48 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK   48 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence            36788999999999999988888777777777777766665443

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=90.36  E-value=0.84  Score=31.79  Aligned_cols=50  Identities=12%  Similarity=0.092  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           73 HYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        73 ~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      ..|.+||.++..++.-+..|+..|..-+.+...|..+...|..|+.++..
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~   63 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS   63 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            35889999999999999999999999999999999999999999888764

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=90.06  E-value=1.6  Score=27.85  Aligned_cols=44  Identities=23%  Similarity=0.299  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035677           77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGE  123 (168)
Q Consensus        77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~  123 (168)
                      ++|.+|..|+.-...|..+++-|..++..-   ...||+||..|+..
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~~ss---q~KlKqRit~lE~~   45 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEYNAT---QMKMKQRLSQLESQ   45 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence            688888888888888888888777666543   46899999888753

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=89.74  E-value=1.6  Score=27.40  Aligned_cols=37  Identities=19%  Similarity=0.185  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677           81 EVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL  117 (168)
Q Consensus        81 kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL  117 (168)
                      .|..|+.....|..+.+.|++....|..||..|++-|
T Consensus         4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A            4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            4667777777777777777777777777777777655

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=87.84  E-value=0.7  Score=27.67  Aligned_cols=26  Identities=19%  Similarity=0.224  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYAD  100 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~  100 (168)
                      +.+||.+|..|-.+|+.|..++..|.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk   27 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLK   27 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            56899999999999999988887665

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=87.41  E-value=5.3  Score=29.19  Aligned_cols=18  Identities=22%  Similarity=0.224  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 035677          129 AQYEELKRERQILKQLCI  146 (168)
Q Consensus       129 a~~e~L~~Ev~rLk~~~~  146 (168)
                      -..+.|.+||++||....
T Consensus        75 ~~~e~Lq~E~erLr~~v~   92 (100)
T 1go4_E           75 EDHSQLQAECERLRGLLR   92 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            457889999999998764

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=86.97  E-value=2.5  Score=29.70  Aligned_cols=70  Identities=20%  Similarity=0.134  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQ--------------NSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQI  140 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~--------------~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~r  140 (168)
                      |.+|..++..+..+++.|..++.-+...              ...+.++-..||.-+..+.-...=-++..+.|+.||.-
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f   81 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF   81 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677788888888888777766654322              23333344455555554443333344667888888887


Q ss_pred             HHHH
Q 035677          141 LKQL  144 (168)
Q Consensus       141 Lk~~  144 (168)
                      ||..
T Consensus        82 Lkk~   85 (86)
T 3swk_A           82 LKKL   85 (86)
T ss_dssp             HTTC
T ss_pred             Hhhc
Confidence            7753

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=86.75  E-value=4.3  Score=25.62  Aligned_cols=19  Identities=37%  Similarity=0.527  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMS   93 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~   93 (168)
                      +.+||.+|..|+.||.+|.
T Consensus         5 vaqlenevaslenenetlk   23 (49)
T 3he5_A            5 VAQLENEVASLENENETLK   23 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccHHHH
Confidence            4556666666665555543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=86.41  E-value=11  Score=29.91  Aligned_cols=81  Identities=16%  Similarity=0.171  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh-----hhhhHHH--HHHHHHH
Q 035677           63 YSQKYRLKQLHYIMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS-----GELTFKE--AQYEELK  135 (168)
Q Consensus        63 SA~RSR~RK~~yi~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~-----q~~~lkd--a~~e~L~  135 (168)
                      +=.-.|+||.+  .|+-..++.++..+.+|...+..|+.....|.-+...|...|..=.     ....+.|  +-...|.
T Consensus        26 sE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~  103 (168)
T 3o0z_A           26 SDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQ  103 (168)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334455553  4555566666666666666666666666666655555555543211     1112222  2345666


Q ss_pred             HHHHHHHHHH
Q 035677          136 RERQILKQLC  145 (168)
Q Consensus       136 ~Ev~rLk~~~  145 (168)
                      .|+.|+|...
T Consensus       104 ~El~~~k~~~  113 (168)
T 3o0z_A          104 EEVKHLKHNL  113 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666543

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=86.39  E-value=2.4  Score=31.22  Aligned_cols=16  Identities=19%  Similarity=0.347  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 035677           77 QLETEVKALQAEVAIM   92 (168)
Q Consensus        77 eLE~kV~~Lq~En~~L   92 (168)
                      +||.++..|+.|+..|
T Consensus        41 ~LE~~~s~le~e~~rl   56 (104)
T 3s9g_A           41 ELEKSLSRMEDENNRL   56 (104)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4666666666555443

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=85.88  E-value=1.7  Score=26.12  Aligned_cols=26  Identities=19%  Similarity=0.171  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYAD  100 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~  100 (168)
                      +.+||.+|..|-.+|..|..++..|.
T Consensus         3 MnQLE~kVEeLl~~n~~Le~eV~rLk   28 (34)
T 2oxj_A            3 MXQLEXKVXELLXKNXHLEXEVXRLK   28 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            67899999999998888887776654

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=85.76  E-value=2  Score=25.13  Aligned_cols=29  Identities=24%  Similarity=0.274  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQN  103 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~  103 (168)
                      +..||.+|.+-+.||..|..++..|+++|
T Consensus         3 vaqlekevaqaeaenyqleqevaqlehec   31 (33)
T 1fmh_A            3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            46789999999999999988888888765

>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}

Probab=85.68  E-value=2.5  Score=29.52  Aligned_cols=46  Identities=22%  Similarity=0.333  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 035677           76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSGEL  124 (168)
Q Consensus        76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q~~  124 (168)
                      .+||.+|..|+.-...|..+++.|..++..-   ...||+||..|+...
T Consensus         3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE~~~   48 (74)
T 3swf_A            3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVEKFL   48 (74)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence            4688888888888888888888777766554   468999999988753

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=85.17  E-value=5.6  Score=31.16  Aligned_cols=41  Identities=17%  Similarity=0.140  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 035677          104 SLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQL  144 (168)
Q Consensus       104 ~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~  144 (168)
                      ..|..|...|+.++..+.....-|...++.|..|+.-|+.-
T Consensus        71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq  111 (152)
T 3a7p_A           71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIE  111 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.97  E-value=12  Score=32.82  Aligned_cols=31  Identities=29%  Similarity=0.328  Sum_probs=13.8

Q ss_pred             HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677          115 QKLSAFSGELTFKEAQYEELKRERQILKQLC  145 (168)
Q Consensus       115 ~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~  145 (168)
                      .++..++....-.....++++.|.+.++.-.
T Consensus       544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~  574 (597)
T 3oja_B          544 QENIALEKQLDNKRAKQAELRQETSLKRQKV  574 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            3333333333333334455555555554433

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=84.81  E-value=2.8  Score=27.73  Aligned_cols=27  Identities=11%  Similarity=0.184  Sum_probs=18.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677           95 RIKYADCQNSLLRAENGSMKQKLSAFS  121 (168)
Q Consensus        95 ~l~~l~~~~~~L~~EN~~Lk~rL~~l~  121 (168)
                      .+..+..+...|..+|.+|+.++..|.
T Consensus        24 ~~~~le~~~~~L~~~N~~L~~~i~~L~   50 (63)
T 1ci6_A           24 EQEALTGECKELEKKNEALKERADSLA   50 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666777777777777775554

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=84.10  E-value=6.2  Score=27.43  Aligned_cols=48  Identities=21%  Similarity=0.230  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      +..-|.++..|+....-=+.-...|..+...|.-||+.|.++|..|.+
T Consensus        27 L~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~   74 (75)
T 3a7o_A           27 LKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK   74 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence            334445555555444444444566777888899999999999988765

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=83.76  E-value=11  Score=28.58  Aligned_cols=6  Identities=0%  Similarity=0.218  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 035677          133 ELKRER  138 (168)
Q Consensus       133 ~L~~Ev  138 (168)
                      .|..++
T Consensus       121 ~l~~~~  126 (138)
T 3hnw_A          121 KYQKNI  126 (138)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=83.32  E-value=2.6  Score=25.14  Aligned_cols=26  Identities=4%  Similarity=0.055  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYAD  100 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~  100 (168)
                      +.+||.+|..|-.++..|..++..|.
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk   27 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIK   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            57899999999999998888877665

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=82.68  E-value=11  Score=29.46  Aligned_cols=34  Identities=15%  Similarity=0.071  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 035677           84 ALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKL  117 (168)
Q Consensus        84 ~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL  117 (168)
                      .|+.|...|..++..++.....|..||..|=.|+
T Consensus       100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW  133 (152)
T 3a7p_A          100 RLNAALISGTIENNVLQQKLSDLKKEHSQLVARW  133 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444333

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=82.44  E-value=2.8  Score=25.43  Aligned_cols=27  Identities=15%  Similarity=0.272  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADC  101 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~  101 (168)
                      +.+||.+|..|-.+++.|..++..|..
T Consensus         3 MnQLE~KVEeLl~~~~~Le~eV~RLk~   29 (36)
T 1kd8_B            3 VKQLKAKVEELKSKLWHLKNKVARLKK   29 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            678999999999999998888877654

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=82.35  E-value=3  Score=25.03  Aligned_cols=26  Identities=8%  Similarity=0.043  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYAD  100 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~  100 (168)
                      +.+||.+|..|-.++..|..++..|.
T Consensus         3 MnQLEdKVEeLl~~~~~Le~EV~RLk   28 (34)
T 3c3f_A            3 MXQIEXKLEXILSXLYHXENEXARIX   28 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            67899999999999998888877665

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=82.34  E-value=4.8  Score=26.13  Aligned_cols=22  Identities=14%  Similarity=0.265  Sum_probs=9.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHh
Q 035677           97 KYADCQNSLLRAENGSMKQKLS  118 (168)
Q Consensus        97 ~~l~~~~~~L~~EN~~Lk~rL~  118 (168)
                      ..|+.....|..+|..|+..+.
T Consensus        25 ~~Le~~~~~L~~~n~~L~~~i~   46 (61)
T 1t2k_D           25 QSLEKKAEDLSSLNGQLQSEVT   46 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444443

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=82.17  E-value=5.4  Score=29.17  Aligned_cols=22  Identities=27%  Similarity=0.271  Sum_probs=13.6

Q ss_pred             HHhHHHHHHHHHHHHHHhhhhh
Q 035677          101 CQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus       101 ~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      .....|..|+..|+.++..|+.
T Consensus        75 ~~~e~Lq~E~erLr~~v~~lEe   96 (100)
T 1go4_E           75 EDHSQLQAECERLRGLLRAMER   96 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            4555666677777777666654

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=82.09  E-value=4.7  Score=28.93  Aligned_cols=38  Identities=24%  Similarity=0.280  Sum_probs=27.1

Q ss_pred             HhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 035677          102 QNSLLRAENGSMKQKLSAFSGELTFKEAQYEELKRERQILKQLCI  146 (168)
Q Consensus       102 ~~~~L~~EN~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~~  146 (168)
                      +...|..++..|..++..|..       ++..+..|+..+|..+.
T Consensus        49 q~~~LE~e~~~L~~e~~~L~~-------e~~~~~~e~d~~k~k~~   86 (90)
T 2wt7_B           49 QKHHLENEKTQLIQQVEQLKQ-------EVSRLARERDAYKVKSE   86 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            345677777777777777765       66777788888877764

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=81.77  E-value=11  Score=26.36  Aligned_cols=47  Identities=13%  Similarity=0.161  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 035677           76 MQLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFSG  122 (168)
Q Consensus        76 ~eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~q  122 (168)
                      +++..+++.++.+|..|..+|..++.+...-..+-..++..|..+.+
T Consensus         9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e   55 (79)
T 3cvf_A            9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ   55 (79)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777777777777777777777666666666666665555443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=81.53  E-value=14  Score=31.69  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=15.5

Q ss_pred             HHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035677          115 QKLSAFSGELTFKEAQYEELKRERQILK  142 (168)
Q Consensus       115 ~rL~~l~q~~~lkda~~e~L~~Ev~rLk  142 (168)
                      .++.+++.+.--.+...+.+.+||.|||
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (471)
T 3mq9_A          443 KKVEELEGEITTLNHKLQDASAEVERLR  470 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3555555544444455556666666665

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=81.00  E-value=3  Score=25.02  Aligned_cols=28  Identities=21%  Similarity=0.292  Sum_probs=19.0

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035677          111 GSMKQKLSAFSGELTFKEAQYEELKRERQILKQLC  145 (168)
Q Consensus       111 ~~Lk~rL~~l~q~~~lkda~~e~L~~Ev~rLk~~~  145 (168)
                      +.|-.++..|-.       .++.|+.||.|||.+.
T Consensus         4 nQLE~kVEeLl~-------~n~~Le~eV~rLk~ll   31 (34)
T 2oxj_A            4 XQLEXKVXELLX-------KNXHLEXEVXRLKXLV   31 (34)
T ss_dssp             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-------hhhhHHHHHHHHHHHH
Confidence            345555555554       6778888888888775

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=80.98  E-value=2.3  Score=25.82  Aligned_cols=27  Identities=26%  Similarity=0.368  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYADC  101 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~~  101 (168)
                      +.+||.+|..|-.+++.|..++..|..
T Consensus         3 MnQLE~kVEeLl~~~~~Le~EV~RL~~   29 (36)
T 1kd8_A            3 VKQLEAEVEEIESEVWHLENEVARLEK   29 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            568999999999999998888877664

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=80.80  E-value=1.6  Score=36.68  Aligned_cols=9  Identities=33%  Similarity=0.416  Sum_probs=3.6

Q ss_pred             HHHHHHHHH
Q 035677          133 ELKRERQIL  141 (168)
Q Consensus       133 ~L~~Ev~rL  141 (168)
                      .|++|+++|
T Consensus        86 ~LkeElerL   94 (251)
T 3m9b_A           86 ALREEVDRL   94 (251)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            333444433

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=80.78  E-value=3.7  Score=24.48  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035677           75 IMQLETEVKALQAEVAIMSPRIKYAD  100 (168)
Q Consensus        75 i~eLE~kV~~Lq~En~~L~~~l~~l~  100 (168)
                      +.+||.+|..|-.++..|..++..+.
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~   27 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNT   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            56899999999999988888877665

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=80.26  E-value=6.9  Score=27.00  Aligned_cols=45  Identities=4%  Similarity=0.112  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 035677           77 QLETEVKALQAEVAIMSPRIKYADCQNSLLRAENGSMKQKLSAFS  121 (168)
Q Consensus        77 eLE~kV~~Lq~En~~L~~~l~~l~~~~~~L~~EN~~Lk~rL~~l~  121 (168)
                      ++..+++.++.+|..|..+|..++.....-..+-..++..|..+.
T Consensus         4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~   48 (72)
T 3cve_A            4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL   48 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667777777777777777766665555555555555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00