Citrus Sinensis ID: 035678

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MHSVFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMPINSKLSCSTVKSSCDMAPMGWLEPDDKEANGVIHSKAGLSAETKKEDLVVGVVDRQFLIIGQQLNEKKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSKDGKKKKEKILKSRLLGGLAEACLLAGCKFACDELTGDDS
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEcccccccccEEEEEEcccEEEEccccccccccEEEEEEccccccccccccccccccEEEEEEEccEEcccccccccccccccccccccccccccccccEEEcccccccccccccEEEEEEEcEEEEEEccccccccccccEEEEccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccEEEEEccccccccccccEEEEEcccEEEEccccccHHHHccEEEEcccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEEEEcHEEEEEcHHHcccccccccccEEccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccHHcHHHcccccc
Coil and Loop (DISEMBL)
mhsvfweedentvlfklplasgtkqegVKVAIEDHKLFISEEAGTSLNQYFGMYvnlpvglnpdsfetsmdqtgLLTVRFKklmpinsklscstvksscdmapmgwlepddkeangvihskaglsaetkkedlvvGVVDRQFLIIGQqlnekkeggscesfvlphgvnpdgfetsmddpgvltvtfkkkpskdgkkkKEKILKSRLLGGLAEACLLAGCKfacdeltgdds
Flexible Loop (DISEMBL)
mhsvfweedentvlfklplasgtkqEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMPINSKLSCSTVKSSCDMAPMGWLEPDDKEANGVIHSkaglsaetkkedLVVGVVDRQFLIIGQQLNEKKEGGSCESFVLPHGVNPdgfetsmddpgVLTVtfkkkpskdgkkkkekiLKSRLLGGLAEACLLAGCKFACDELTGDDS
Low Complexity Region (SEG)
MHSVFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMPINSKLSCSTVKSSCDMAPMGWLEPDDKEANGVIHSKAGLSAETKKEDLVVGVVDRQFLIIGQQLNEKKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFkkkpskdgkkkkekilkSRllgglaeacllagcKFACDELTGDDS
Disordered region (IsUnstruct)
****FWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMPINSKLSCSTVKSSCDMAPMGWL**********************KEDLVVGVVDRQFLIIGQQLN*******CESFVLPH***********************************ILKSRLLGGLAEACLLAGCKFACDE******
Disordered Region (DISOPRED)
**SVFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMPINSKLSCSTVKSSCDMAPMGWLEPDDKEANGVI*********TKKEDLVVGVVDRQFLIIG**************FVLPHGVNPDGFETSMDDPGVLT*********************RLLGGLAEACLLAGCKFACDELTG***
Disordered Region (DISEMBL)
MHSVFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMPINSKLSCSTVKSSCDMAPMGWLEPDDKEANGVIHSKAGLSAETKKEDLVVGVVDRQFLIIGQQLNEKKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFK************KILKSRLLGGLAEACLLAGCKFACDELTGDDS
Disordered Region (DISPRO)
**SVFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMPINSKLSC*TVKSSCDMAPMGWLEPDDKEANGVIHSKAGLSAETKKEDLVVGVVDRQFLIIGQQLNE*KEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSKDGKKKKEKILKSRLLGGLAEACLLAGCKFACDELT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHSVFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMPINSKLSCSTVKSSCDMAPMGWLEPDDKEANGVIHSKAGLSAETKKEDLVVGVVDRQFLIIGQQLNEKKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSKDGKKKKEKILKSRLLGGLAEACLLAGCKFACDELTGDDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	231
pfam00011	101	pfam00011, HSP20, Hsp20/alpha crystallin family	8e-08
cd06464	88	cd06464, ACD_sHsps-like, Alpha-crystallin domain (	8e-06
cd06526	83	cd06526, metazoan_ACD, Alpha-crystallin domain (AC	1e-05
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	5e-05
COG0071	146	COG0071, IbpA, Molecular chaperone (small heat sho	2e-04
cd06472	92	cd06472, ACD_ScHsp26_like, Alpha crystallin domain	0.001
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	0.002

>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family

 Score = 48.7 bits (117), Expect = 8e-08
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 11/80 (13%)

Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCES----------FVLPHGVNPDGFETSMDD 178
           K E+L V V D + L+ G+   E+++     S          FVLP   +PD  + S+ D
Sbjct: 19  KPEELKVKVEDNRVLVKGKHEKEEEDDHGLRSERSYRSFSRKFVLPENADPDKVKASLKD 78

Query: 179 PGVLTVTFKKKPSKDGKKKK 198
            GVLTVT  K    + K ++
Sbjct: 79  -GVLTVTVPKLEPPEKKPRR 97

Length = 101

>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

 Score = 42.5 bits (101), Expect = 8e-06
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 12/71 (16%)

Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-----------SFVLPHGVNPDGFETSMD 177
           KKED+ V V D    I G++  E++E  +             SF LP  V+PD  + S++
Sbjct: 19  KKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78

Query: 178 DPGVLTVTFKK 188
           + GVLT+T  K
Sbjct: 79  N-GVLTITLPK 88

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 88

>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGS-----CESFVLPHGVNPDGFETSMDDPGVLT 183
           K E+L V V D + ++ G+    + E G         + LP GV+PD   +S+   GVLT
Sbjct: 19  KPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLT 78

Query: 184 VT 185
           + 
Sbjct: 79  IE 80

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 83

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCESFV----LPHGVNPDGFETSMDDPGVLTV 184
           KKED+ V V D    I G++  E++   S   F     LP  V+P+  + S+++ GVL +
Sbjct: 18  KKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLEN-GVLEI 76

Query: 185 TFKK 188
           T  K
Sbjct: 77  TLPK 80

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 13/85 (15%)

Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSC------------ESFVLPHGVNPDGFETSM 176
            KED+ + V      I G++  E++E                 +F LP  V+P+  +   
Sbjct: 62  DKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY 121

Query: 177 DDPGVLTVTFKKKPSKDGKKKKEKI 201
            + G+LTVT  K   ++ K K+ +I
Sbjct: 122 KN-GLLTVTLPKAEPEEKKPKRIEI 145

Length = 146

>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 14/73 (19%)

Query: 129 KKEDLVVGVVDRQFLII-GQQLNEKKEGG--------SCESFV----LPHGVNPDGFETS 175
           KKED+ V V D + L I G++  E+++ G        S   FV    LP   + D  +  
Sbjct: 21  KKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80

Query: 176 MDDPGVLTVTFKK 188
           +++ GVLTVT  K
Sbjct: 81  LEN-GVLTVTVPK 92

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative stress. Also belonging to this group is wheat HSP16.9 which differs in quaternary structure from the shell-type particles of ScHsp26, it assembles as a dodecameric double disc, with each disc organized as a trimer of dimers. Length = 92

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 6  WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFIS--EEAGTSLNQYFGMY---VNLPVG 60
          W + ++ V+  + L  G K+E +KV +ED+ L IS   E      + +G +     LP  
Sbjct: 1  WYQTDDEVVVTVDLP-GVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPED 59

Query: 61 LNPDSFETSMDQTGLLTVRFKK 82
          ++P+  + S++  G+L +   K
Sbjct: 60 VDPEKSKASLE-NGVLEITLPK 80

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	97.64
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	97.44
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	97.35
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	97.32
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	97.29
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	97.19
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	97.17
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	97.14
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	97.14
cd00298	80	ACD_sHsps_p23-like This domain family includes the	97.14
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	97.12
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	97.08
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	97.03
KOG3591	173	consensus Alpha crystallins [Posttranslational mod	96.91
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	96.78
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	96.73
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	96.6
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	96.52
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	96.52
COG0071	146	IbpA Molecular chaperone (small heat shock protein	96.51
PRK10743	137	heat shock protein IbpA; Provisional	96.5
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	96.47
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	96.46
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	96.42
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	96.36
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	96.31
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	96.21
PRK11597	142	heat shock chaperone IbpB; Provisional	96.18
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	96.14
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	96.14
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	96.02
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	95.99
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	95.9
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	95.85
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	95.35
cd00298	80	ACD_sHsps_p23-like This domain family includes the	94.85
cd06463	84	p23_like Proteins containing this p23_like domain	94.83
PRK10743	137	heat shock protein IbpA; Provisional	93.87
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	93.71
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	93.15
PRK11597	142	heat shock chaperone IbpB; Provisional	92.26
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	92.25
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	90.36
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	90.16
COG0071	146	IbpA Molecular chaperone (small heat shock protein	89.48
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	88.11
cd06463	84	p23_like Proteins containing this p23_like domain	86.61
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	84.45
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	80.63

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=97.64  E-value=0.00027  Score=48.89  Aligned_cols=79  Identities=29%  Similarity=0.492  Sum_probs=59.1

Q ss_pred             ccccCceEEEEeecCccccccceEEEEeccceeeecccc------cccc-----cceeeeeecccccCCCccccccccce
Q 035678            6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAG------TSLN-----QYFGMYVNLPVGLNPDSFETSMDQTG   74 (231)
Q Consensus         6 weedentvlfklplasgtkqegvkvaiedhklfiseeag------tsln-----qyfgmyvnlpvglnpdsfetsmdqtg   74 (231)
                      |.|+++.+...+.++ |-..+.++|-++++.|.|+=+-.      ..+.     ..|---+.||.+.+++..+.++ ..|
T Consensus         2 i~e~~~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~G   79 (102)
T PF00011_consen    2 IKEDEDEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-ENG   79 (102)
T ss_dssp             EEESSSEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TTS
T ss_pred             eEECCCEEEEEEECC-CCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cCC
Confidence            567788888888776 88899999999999999974433      2222     2566678999999999999999 999


Q ss_pred             eeEEEeeceeec
Q 035678           75 LLTVRFKKLMPI   86 (231)
Q Consensus        75 lltvrfkklmpi   86 (231)
                      +|+|++.|.-+-
T Consensus        80 vL~I~~pk~~~~   91 (102)
T PF00011_consen   80 VLTITIPKKEEE   91 (102)
T ss_dssp             EEEEEEEBSSSC
T ss_pred             EEEEEEEccccc
Confidence            999999876544

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=97.44  E-value=0.00023  Score=50.71  Aligned_cols=62  Identities=29%  Similarity=0.385  Sum_probs=49.4

Q ss_pred             ccccceEEEEeeceeEEeeccccccccCC-----ceeeeeecCCCCCCCcccccCCCceEEEEeecC
Q 035678          128 TKKEDLVVGVVDRQFLIIGQQLNEKKEGG-----SCESFVLPHGVNPDGFETSMDDPGVLTVTFKKK  189 (231)
Q Consensus       128 tkkedlvvgvvdrqfliigqqlnekkegg-----scesfvlphgvnpdgfetsmddpgvltvtfkkk  189 (231)
                      -++||+-|-|.++...|-|++-.+..+.+     -.-+|.||-+|+++....++.+-|||+|+..||
T Consensus        18 ~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~   84 (84)
T cd06498          18 FSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK   84 (84)
T ss_pred             CCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence            35789999999998888887543332222     245789999999999999999889999999875

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=97.35  E-value=0.00029  Score=45.91  Aligned_cols=59  Identities=42%  Similarity=0.658  Sum_probs=48.8

Q ss_pred             cccceEEEEeeceeEEeeccccccc-----------cCCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKK-----------EGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK  188 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekk-----------eggscesfvlphgvnpdgfetsmddpgvltvtfkk  188 (231)
                      +++|+-|=+.++...|-|+.-++..           .+.-.-+|-||++++++....+++| |+|+|++.|
T Consensus        19 ~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~-G~L~I~~pk   88 (88)
T cd06464          19 KKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN-GVLTITLPK   88 (88)
T ss_pred             CHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC-CEEEEEEcC
Confidence            4678999998888888888765443           4556678899999999999999999 999999864

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=97.32  E-value=0.00036  Score=49.20  Aligned_cols=61  Identities=30%  Similarity=0.458  Sum_probs=47.8

Q ss_pred             ccccceEEEEeeceeEEeeccccccccCCc-----eeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678          128 TKKEDLVVGVVDRQFLIIGQQLNEKKEGGS-----CESFVLPHGVNPDGFETSMDDPGVLTVTFKK  188 (231)
Q Consensus       128 tkkedlvvgvvdrqfliigqqlnekkeggs-----cesfvlphgvnpdgfetsmddpgvltvtfkk  188 (231)
                      -++||+-|-|-+.+..|-|++-.++.+++.     .-+|.||.+|+++....++..-|||+|+..|
T Consensus        18 ~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK   83 (83)
T cd06478          18 FSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR   83 (83)
T ss_pred             CCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence            357899999999888888875433322222     3578999999999999999989999999864

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=97.29  E-value=0.0003  Score=50.55  Aligned_cols=61  Identities=21%  Similarity=0.396  Sum_probs=48.4

Q ss_pred             ccccceEEEEeeceeEEeecccccccc--CCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678          128 TKKEDLVVGVVDRQFLIIGQQLNEKKE--GGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK  188 (231)
Q Consensus       128 tkkedlvvgvvdrqfliigqqlnekke--ggscesfvlphgvnpdgfetsmddpgvltvtfkk  188 (231)
                      -++||+-|-|.++...|-|+.-.+...  |.-+-+|.||..|+++....++..-|||||+..+
T Consensus        19 ~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479          19 FSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             CCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence            467899999999988888875433211  3346678999999999999999888999999863

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=97.19  E-value=0.00063  Score=48.54  Aligned_cols=60  Identities=28%  Similarity=0.426  Sum_probs=47.4

Q ss_pred             cccceEEEEeeceeEEeeccccccccCCc-----eeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGS-----CESFVLPHGVNPDGFETSMDDPGVLTVTFKK  188 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekkeggs-----cesfvlphgvnpdgfetsmddpgvltvtfkk  188 (231)
                      +++|+-|-|.|+...|-|+.-.+..+++-     .-+|.||.+|+++....++..-|||+|+..|
T Consensus        22 ~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK   86 (86)
T cd06497          22 SPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGPK   86 (86)
T ss_pred             CHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEecC
Confidence            47899999999988888875333222221     2379999999999999999888999999865

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=97.17  E-value=0.0011  Score=45.91  Aligned_cols=64  Identities=34%  Similarity=0.568  Sum_probs=48.9

Q ss_pred             cccceEEEEeeceeEEeeccccccccCCc----------eeeeeecCCCCCCCcccccCCCceEEEEeecCCCCc
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGS----------CESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSKD  193 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekkeggs----------cesfvlphgvnpdgfetsmddpgvltvtfkkkpskd  193 (231)
                      .++|+-|-+-++...|.|+.-.+..++..          ..+|-||-+++++..+.++ .-|+|+|++.|++...
T Consensus        19 ~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~GvL~I~~pk~~~~~   92 (102)
T PF00011_consen   19 DKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-ENGVLTITIPKKEEEE   92 (102)
T ss_dssp             -GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TTSEEEEEEEBSSSCT
T ss_pred             ChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cCCEEEEEEEcccccc
Confidence            57899999999998888887734444433          3478999999999999999 7799999999987764

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=97.14  E-value=0.00086  Score=49.71  Aligned_cols=59  Identities=29%  Similarity=0.411  Sum_probs=50.0

Q ss_pred             ccccceEEEEeeceeEEeeccccccccCCc-----eeeeeecCCCCCCCcccccCCCceEEEEe
Q 035678          128 TKKEDLVVGVVDRQFLIIGQQLNEKKEGGS-----CESFVLPHGVNPDGFETSMDDPGVLTVTF  186 (231)
Q Consensus       128 tkkedlvvgvvdrqfliigqqlnekkeggs-----cesfvlphgvnpdgfetsmddpgvltvtf  186 (231)
                      -+.|||-|-|.|+...|-|++-.+..++|.     +-+|.||.+|+++....++..-|+|+|+.
T Consensus        26 F~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea   89 (91)
T cd06480          26 FKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA   89 (91)
T ss_pred             CCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence            367899999999998888987766556654     45788999999999999999999999974

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=97.14  E-value=0.0015  Score=46.99  Aligned_cols=73  Identities=21%  Similarity=0.361  Sum_probs=54.9

Q ss_pred             cCceEEEEeecCccccccceEEEEeccceeeecccccccccceeee---eecccccCCCccccccccceeeEEEeec
Q 035678            9 DENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMY---VNLPVGLNPDSFETSMDQTGLLTVRFKK   82 (231)
Q Consensus         9 dentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmy---vnlpvglnpdsfetsmdqtglltvrfkk   82 (231)
                      +++.+.+.+-+ .|-+.|-+.|.++++.|-|+-|--.+-..++|-|   +.||..++|++...++...|.|||+..+
T Consensus         6 ~~~~~~v~~dl-pG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479           6 LGDTYQFAVDV-SDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             cCCeEEEEEEC-CCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence            33444444443 3888999999999999999876433222344544   6899999999999999999999998753

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=97.14  E-value=0.0022  Score=39.21  Aligned_cols=75  Identities=25%  Similarity=0.475  Sum_probs=60.1

Q ss_pred             ccccCceEEEEeecCccccccceEEEEeccceeeecccccc-----cccceeeeeecccccCCCccccccccceeeEEEe
Q 035678            6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS-----LNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRF   80 (231)
Q Consensus         6 weedentvlfklplasgtkqegvkvaiedhklfiseeagts-----lnqyfgmyvnlpvglnpdsfetsmdqtglltvrf   80 (231)
                      |.+.++.+.+.+++..-. .+.++|.+.+..|.|+=....+     -+.-|-.-++||-.++|+.....++. |.|++++
T Consensus         1 ~~q~~~~v~i~i~~~~~~-~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~-~~l~i~l   78 (80)
T cd00298           1 WYQTDDEVVVTVDLPGVK-KEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLEN-GVLEITL   78 (80)
T ss_pred             CEEcCCEEEEEEECCCCC-HHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEEC-CEEEEEE
Confidence            778889999999887654 8889999999999998665432     23445556679999999988888886 9999998


Q ss_pred             ec
Q 035678           81 KK   82 (231)
Q Consensus        81 kk   82 (231)
                      .|
T Consensus        79 ~K   80 (80)
T cd00298          79 PK   80 (80)
T ss_pred             cC
Confidence            75

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=97.12  E-value=0.00096  Score=47.76  Aligned_cols=59  Identities=17%  Similarity=0.392  Sum_probs=46.8

Q ss_pred             cccceEEEEeeceeEEeeccccccccCCc------eeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGS------CESFVLPHGVNPDGFETSMDDPGVLTVTFKK  188 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekkeggs------cesfvlphgvnpdgfetsmddpgvltvtfkk  188 (231)
                      ++||+-|-|.|+...|-|+.- ++.++.+      .-+|.||.+|+++....++.+-|||+|+..|
T Consensus        19 ~~edi~V~v~~~~L~I~g~~~-~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr   83 (83)
T cd06476          19 TPDEITVRTVDNLLEVSARHP-QRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR   83 (83)
T ss_pred             CHHHeEEEEECCEEEEEEEEc-ceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence            578999999999877778753 3333322      3478999999999999999989999999753

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=97.08  E-value=0.00058  Score=47.12  Aligned_cols=61  Identities=31%  Similarity=0.527  Sum_probs=49.3

Q ss_pred             ccccceEEEEeeceeEEeeccccccc-----cCCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678          128 TKKEDLVVGVVDRQFLIIGQQLNEKK-----EGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK  188 (231)
Q Consensus       128 tkkedlvvgvvdrqfliigqqlnekk-----eggscesfvlphgvnpdgfetsmddpgvltvtfkk  188 (231)
                      -+++|+-|-|.++...|-|++-.+..     .+.-..+|.||..|+++....++.+-|+|+|+..|
T Consensus        18 ~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526          18 FKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             CCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence            46789999999988888888754432     12335678999999999999999999999999864

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=97.03  E-value=0.0023  Score=45.12  Aligned_cols=74  Identities=19%  Similarity=0.277  Sum_probs=58.4

Q ss_pred             ccCceEEEEeecCccccccceEEEEeccceeeeccc------ccccccceeeeeecccccCCCccccccccceeeEEEee
Q 035678            8 EDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEA------GTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFK   81 (231)
Q Consensus         8 edentvlfklplasgtkqegvkvaiedhklfiseea------gtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfk   81 (231)
                      ++++.+.+.+-+. |-+.+.++|.+++..|.|+=+.      +....+-|---+.||.++++++...++.+.|+|+|+..
T Consensus         4 ~~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P   82 (83)
T cd06478           4 LDKDRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP   82 (83)
T ss_pred             ecCceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence            4666677777764 8999999999999999986432      11223347778999999999999999999999999875


Q ss_pred             c
Q 035678           82 K   82 (231)
Q Consensus        82 k   82 (231)
                      |
T Consensus        83 K   83 (83)
T cd06478          83 R   83 (83)
T ss_pred             C
Confidence            4

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.0019  Score=52.39  Aligned_cols=66  Identities=32%  Similarity=0.546  Sum_probs=52.4

Q ss_pred             ccccceEEEEeeceeEEeecccccc-ccCCc-----eeeeeecCCCCCCCcccccCCCceEEEEeecCCCCch
Q 035678          128 TKKEDLVVGVVDRQFLIIGQQLNEK-KEGGS-----CESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSKDG  194 (231)
Q Consensus       128 tkkedlvvgvvdrqfliigqqlnek-keggs-----cesfvlphgvnpdgfetsmddpgvltvtfkkkpskdg  194 (231)
                      -+-|+|+|=++|...+|=|++ +|+ .+.|.     +-.|.||-||+|+-..++...-|+|||+-.|++.+..
T Consensus        83 F~PeEl~Vk~~~~~l~V~gkH-eer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~  154 (173)
T KOG3591|consen   83 FKPEELKVKTDDNTLEVEGKH-EEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQD  154 (173)
T ss_pred             CcccceEEEeCCCEEEEEeee-ccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCCCcCc
Confidence            367899999999955555555 555 44443     3458899999999999999999999999999887654

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=96.78  E-value=0.0029  Score=45.75  Aligned_cols=59  Identities=29%  Similarity=0.470  Sum_probs=49.8

Q ss_pred             cccceEEEEeeceeEEeeccccccccCCc-----eeeeeecCCCCCCCcccccCCCceEEEEee
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGS-----CESFVLPHGVNPDGFETSMDDPGVLTVTFK  187 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekkeggs-----cesfvlphgvnpdgfetsmddpgvltvtfk  187 (231)
                      ++||+-|-|-|....|-|++-.++.+++.     +-+|.||-+|+++..+.++.+-|||+|+-+
T Consensus        19 ~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~   82 (83)
T cd06477          19 RPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK   82 (83)
T ss_pred             CHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence            47899999999999999987665555555     347889999999999999878899999864

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=96.73  E-value=0.0021  Score=44.93  Aligned_cols=59  Identities=37%  Similarity=0.549  Sum_probs=45.0

Q ss_pred             cccceEEEEeec-eeEEeeccccc------------cccCCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678          129 KKEDLVVGVVDR-QFLIIGQQLNE------------KKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK  188 (231)
Q Consensus       129 kkedlvvgvvdr-qfliigqqlne------------kkeggscesfvlphgvnpdgfetsmddpgvltvtfkk  188 (231)
                      +++|+-|-|-+. ...|-|+.-++            ...|.-..+|-||..|+++....+++| |||+|++.|
T Consensus        21 ~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~~n-GvL~I~lPK   92 (92)
T cd06472          21 KKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFLEN-GVLTVTVPK   92 (92)
T ss_pred             ChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEEEC-CEEEEEecC
Confidence            478999988765 45566754322            223455667899999999999999998 999999865

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=96.60  E-value=0.0028  Score=45.32  Aligned_cols=58  Identities=26%  Similarity=0.424  Sum_probs=46.4

Q ss_pred             cccceEEEEeeceeEEeeccccccc-c--------CCceeeeeecCCCCCCCcccccCCCceEEEEe
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKK-E--------GGSCESFVLPHGVNPDGFETSMDDPGVLTVTF  186 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekk-e--------ggscesfvlphgvnpdgfetsmddpgvltvtf  186 (231)
                      +++|+-|-|-++...|-|++-.+.. +        |.-.-+|.||+.|+++....++..-|||+|+.
T Consensus        19 ~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~   85 (87)
T cd06481          19 SPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA   85 (87)
T ss_pred             ChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence            4779999999999999898643322 2        22345789999999999999998889999986

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=96.52  E-value=0.0095  Score=41.07  Aligned_cols=70  Identities=30%  Similarity=0.489  Sum_probs=54.9

Q ss_pred             eEEEEeecCccccccceEEEEeccceeeeccccc------ccccceeeeeecccccCCCccccccccceeeEEEeec
Q 035678           12 TVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGT------SLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKK   82 (231)
Q Consensus        12 tvlfklplasgtkqegvkvaiedhklfiseeagt------slnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkk   82 (231)
                      ...+.+.|. |-+.+-++|.+++..|.|+=+...      ...+.|---+.||..+++++...++...|+|+|+..|
T Consensus         8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526           8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence            444555554 788999999999999999855322      2234566678999999999999999999999999754

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=96.52  E-value=0.0097  Score=41.57  Aligned_cols=76  Identities=33%  Similarity=0.468  Sum_probs=55.7

Q ss_pred             cccccCceEEEEeecCccccccceEEEEecc-ceeeecccccc-------------cccceeeeeecccccCCCcccccc
Q 035678            5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDH-KLFISEEAGTS-------------LNQYFGMYVNLPVGLNPDSFETSM   70 (231)
Q Consensus         5 fweedentvlfklplasgtkqegvkvaiedh-klfiseeagts-------------lnqyfgmyvnlpvglnpdsfetsm   70 (231)
                      -|.|+++.+...+-|+ |-+.+.++|.+++. .|.|+-+....             -...|---+.||..+++++...++
T Consensus         3 dv~E~~~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~   81 (92)
T cd06472           3 DWKETPEAHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL   81 (92)
T ss_pred             cEEEcCCeEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE
Confidence            4667777777777665 56778999999865 68887543110             122455567999999999999999


Q ss_pred             ccceeeEEEeec
Q 035678           71 DQTGLLTVRFKK   82 (231)
Q Consensus        71 dqtglltvrfkk   82 (231)
                      +. |+|++++.|
T Consensus        82 ~n-GvL~I~lPK   92 (92)
T cd06472          82 EN-GVLTVTVPK   92 (92)
T ss_pred             EC-CEEEEEecC
Confidence            75 999999865

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.0039  Score=47.26  Aligned_cols=86  Identities=28%  Similarity=0.448  Sum_probs=61.6

Q ss_pred             cCCCcCCCCCccccCceeecccCCCccccccceEEEEeeceeEEeeccccccc------------cCCceeeeeecCCCC
Q 035678          101 MAPMGWLEPDDKEANGVIHSKAGLSAETKKEDLVVGVVDRQFLIIGQQLNEKK------------EGGSCESFVLPHGVN  168 (231)
Q Consensus       101 mapmgwlepddkeangvihskaglsaetkkedlvvgvvdrqfliigqqlnekk------------eggscesfvlphgvn  168 (231)
                      ..|+-+.+-||  .-=|.-.-+|++    |+|+-|=+.+.++.|-|+.-++.+            .|.-=..|.||..|+
T Consensus        40 ~P~vdi~e~~~--~~~I~~elPG~~----kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~  113 (146)
T COG0071          40 TPPVDIEETDD--EYRITAELPGVD----KEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVD  113 (146)
T ss_pred             CCcEEEEEcCC--EEEEEEEcCCCC----hHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccccc
Confidence            34555666555  333444556664    789999999999999999876432            122235789999999


Q ss_pred             CCCcccccCCCceEEEEeecCCCCc
Q 035678          169 PDGFETSMDDPGVLTVTFKKKPSKD  193 (231)
Q Consensus       169 pdgfetsmddpgvltvtfkkkpskd  193 (231)
                      |+.-..+.. -|||+|++.|.....
T Consensus       114 ~~~~~A~~~-nGvL~I~lpk~~~~~  137 (146)
T COG0071         114 PEVIKAKYK-NGLLTVTLPKAEPEE  137 (146)
T ss_pred             ccceeeEee-CcEEEEEEecccccc
Confidence            998666654 599999999877654

>PRK10743 heat shock protein IbpA; Provisional

Probab=96.50  E-value=0.0034  Score=48.86  Aligned_cols=58  Identities=19%  Similarity=0.386  Sum_probs=42.9

Q ss_pred             cccceEEEEeeceeEEeecccccccc----------CCceeeeeecCCCCCCCcccccCCCceEEEEeecC
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKKE----------GGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKK  189 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekke----------ggscesfvlphgvnpdgfetsmddpgvltvtfkkk  189 (231)
                      +|+|+-|-|-|....|-|++-.+.++          |.-.-+|.||.+|+++.  .++. -|||+|++.|.
T Consensus        57 ~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~-dGVL~I~lPK~  124 (137)
T PRK10743         57 AESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANLV-NGLLYIDLERV  124 (137)
T ss_pred             CHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEEe-CCEEEEEEeCC
Confidence            47899999988877777875443322          22334899999999993  5555 59999999985

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=96.47  E-value=0.0051  Score=43.89  Aligned_cols=59  Identities=32%  Similarity=0.514  Sum_probs=46.7

Q ss_pred             cccceEEEEeeceeEEeeccccccccCCc-----eeeeeecCCCCCCCcccccCCCceEEEEee
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGS-----CESFVLPHGVNPDGFETSMDDPGVLTVTFK  187 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekkeggs-----cesfvlphgvnpdgfetsmddpgvltvtfk  187 (231)
                      +++||-|-|.+....|-|+.-.++.+++.     +.+|.||-.|+++..+..+..-|||+|+..
T Consensus        22 ~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~lP   85 (86)
T cd06475          22 APEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEAP   85 (86)
T ss_pred             CHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEEec
Confidence            57899999988877777876433333433     457899999999999999998899999863

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=96.46  E-value=0.0092  Score=41.32  Aligned_cols=76  Identities=22%  Similarity=0.475  Sum_probs=55.7

Q ss_pred             ccccccCceEEEEeecCccccccceEEEEeccceeeeccccc----------cc--ccceeee---eecccccCCCcccc
Q 035678            4 VFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGT----------SL--NQYFGMY---VNLPVGLNPDSFET   68 (231)
Q Consensus         4 vfweedentvlfklplasgtkqegvkvaiedhklfiseeagt----------sl--nqyfgmy---vnlpvglnpdsfet   68 (231)
                      +-|.|+++.+.+.+.|+ |-+.+-++|.+++..|.|+=+.-.          -+  ..++|-|   +.|| ..+++....
T Consensus         3 ~di~e~~~~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A   80 (93)
T cd06471           3 TDIKETDDEYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA   80 (93)
T ss_pred             eeEEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence            34567778888888877 778889999999999999533221          01  1134444   6888 789999888


Q ss_pred             ccccceeeEEEeec
Q 035678           69 SMDQTGLLTVRFKK   82 (231)
Q Consensus        69 smdqtglltvrfkk   82 (231)
                      ++ +.|+|+|++.|
T Consensus        81 ~~-~dGvL~I~lPK   93 (93)
T cd06471          81 KY-ENGVLKITLPK   93 (93)
T ss_pred             EE-ECCEEEEEEcC
Confidence            88 78999999865

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=96.42  E-value=0.012  Score=41.94  Aligned_cols=74  Identities=18%  Similarity=0.245  Sum_probs=57.0

Q ss_pred             cCceEEEEeecCccccccceEEEEeccceeeeccc------ccccccceeeeeecccccCCCccccccccceeeEEEeec
Q 035678            9 DENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEA------GTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKK   82 (231)
Q Consensus         9 dentvlfklplasgtkqegvkvaiedhklfiseea------gtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkk   82 (231)
                      +++.+.+.+-+ .|-+.+-++|.+++..|-|+=+.      +....+-|---+.||.++++++...++++.|.|+|+..|
T Consensus         5 ~~~~~~v~~dl-pG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk   83 (84)
T cd06498           5 EKDKFSVNLDV-KHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR   83 (84)
T ss_pred             CCceEEEEEEC-CCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence            44555556654 68889999999999999987432      112233477778999999999999999999999999866


Q ss_pred             e
Q 035678           83 L   83 (231)
Q Consensus        83 l   83 (231)
                      +
T Consensus        84 ~   84 (84)
T cd06498          84 K   84 (84)
T ss_pred             C
Confidence            3

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=96.36  E-value=0.016  Score=41.99  Aligned_cols=74  Identities=20%  Similarity=0.317  Sum_probs=59.0

Q ss_pred             cccCceEEEEeecCccccccceEEEEeccceeeeccccc------ccccceeeeeecccccCCCccccccccceeeEEEe
Q 035678            7 EEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGT------SLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRF   80 (231)
Q Consensus         7 eedentvlfklplasgtkqegvkvaiedhklfiseeagt------slnqyfgmyvnlpvglnpdsfetsmdqtglltvrf   80 (231)
                      +|+++...+++-| .|-+.|-++|.+++..|.|+=|...      ...+-|.-.++||.+++++..+.++...|+|+|+-
T Consensus         3 ~e~~~~~~v~~dl-pG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~   81 (83)
T cd06477           3 EEGKPMFQILLDV-VQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVET   81 (83)
T ss_pred             ccCCceEEEEEEc-CCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEe
Confidence            5667777776654 4788999999999999999855432      23346778899999999999999988999999975


Q ss_pred             e
Q 035678           81 K   81 (231)
Q Consensus        81 k   81 (231)
                      +
T Consensus        82 ~   82 (83)
T cd06477          82 K   82 (83)
T ss_pred             c
Confidence            4

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=96.31  E-value=0.015  Score=41.42  Aligned_cols=74  Identities=19%  Similarity=0.256  Sum_probs=56.1

Q ss_pred             ccCceEEEEeecCccccccceEEEEeccceeeecccc------cccccceeeeeecccccCCCccccccccceeeEEEee
Q 035678            8 EDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAG------TSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFK   81 (231)
Q Consensus         8 edentvlfklplasgtkqegvkvaiedhklfiseeag------tslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfk   81 (231)
                      |+++.+.+.+-+ .|-+.+-++|.++|..|-|+=+-.      .-..+-|---+.||.+++++....++...|.|+|+..
T Consensus         7 e~~~~~~v~~dl-pG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P   85 (86)
T cd06497           7 SDRDKFTIYLDV-KHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP   85 (86)
T ss_pred             EcCCEEEEEEEC-CCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence            455555556544 477889999999999999984321      1111237778899999999999999999999999876


Q ss_pred             c
Q 035678           82 K   82 (231)
Q Consensus        82 k   82 (231)
                      |
T Consensus        86 K   86 (86)
T cd06497          86 K   86 (86)
T ss_pred             C
Confidence            4

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=96.21  E-value=0.021  Score=37.10  Aligned_cols=75  Identities=31%  Similarity=0.472  Sum_probs=53.8

Q ss_pred             ccccCceEEEEeecCccccccceEEEEeccceeeecccccc------------cccceeeeeecccccCCCccccccccc
Q 035678            6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS------------LNQYFGMYVNLPVGLNPDSFETSMDQT   73 (231)
Q Consensus         6 weedentvlfklplasgtkqegvkvaiedhklfiseeagts------------lnqyfgmyvnlpvglnpdsfetsmdqt   73 (231)
                      |.|+++.+.+.+-|. |-..+.++|.+.++.|.|+=+....            -..-|---+.||.+++++....+++. 
T Consensus         2 i~e~~~~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~-   79 (88)
T cd06464           2 VYETDDAYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN-   79 (88)
T ss_pred             cEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC-
Confidence            345555566666554 4677899999999999998332211            12334444679999999999999988 


Q ss_pred             eeeEEEeec
Q 035678           74 GLLTVRFKK   82 (231)
Q Consensus        74 glltvrfkk   82 (231)
                      |+|+|++.|
T Consensus        80 G~L~I~~pk   88 (88)
T cd06464          80 GVLTITLPK   88 (88)
T ss_pred             CEEEEEEcC
Confidence            999999864

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=96.18  E-value=0.0052  Score=48.55  Aligned_cols=58  Identities=19%  Similarity=0.321  Sum_probs=43.2

Q ss_pred             cccceEEEEeeceeEEeecccccccc----------CCceeeeeecCCCCCCCcccccCCCceEEEEeecC
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKKE----------GGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKK  189 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekke----------ggscesfvlphgvnpdgfetsmddpgvltvtfkkk  189 (231)
                      +|+|+-|-|-+....|-|+.-.+.++          |.-+-+|.||..|+++  ..++ +-|||+|++.|+
T Consensus        55 ~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~-~nGVL~I~lPK~  122 (142)
T PRK11597         55 RQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF-VNGLLHIDLIRN  122 (142)
T ss_pred             CHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE-cCCEEEEEEecc
Confidence            47899999988888888875333221          3345688999999998  4555 459999999885

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=96.14  E-value=0.0097  Score=41.98  Aligned_cols=58  Identities=22%  Similarity=0.426  Sum_probs=42.1

Q ss_pred             ccccceEEEEeeceeEEeeccccccc-----------cCCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678          128 TKKEDLVVGVVDRQFLIIGQQLNEKK-----------EGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK  188 (231)
Q Consensus       128 tkkedlvvgvvdrqfliigqqlnekk-----------eggscesfvlphgvnpdgfetsmddpgvltvtfkk  188 (231)
                      -+|||+-|-+-+....|-|+.-.+..           .|.-.-+|-||++++.+  ..++ +-|||+|++.+
T Consensus        22 ~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~-~~GvL~I~l~~   90 (90)
T cd06470          22 FSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL-ENGLLTIDLER   90 (90)
T ss_pred             CCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE-eCCEEEEEEEC
Confidence            47889999998887777776544432           24445679999999986  4444 55999999863

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=96.14  E-value=0.0064  Score=44.45  Aligned_cols=57  Identities=21%  Similarity=0.317  Sum_probs=46.6

Q ss_pred             cccceEEEEeeceeEEeecccccccc--------CCceeeeeecCCCCCCCcccccCCCceEEEE
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKKE--------GGSCESFVLPHGVNPDGFETSMDDPGVLTVT  185 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekke--------ggscesfvlphgvnpdgfetsmddpgvltvt  185 (231)
                      +++|+-|-|.|....|-|+.-.++.+        |.-.-+|.||.+|+++....++.+-|||++.
T Consensus        20 ~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~   84 (87)
T cd06482          20 EPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE   84 (87)
T ss_pred             CHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence            47899999999999999986443332        2225678999999999999999999999985

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=96.02  E-value=0.031  Score=39.41  Aligned_cols=74  Identities=20%  Similarity=0.361  Sum_probs=51.3

Q ss_pred             cccccCceEEEEeecCccccccceEEEEeccceeeecccccc-------c-----ccceeeeeecccccCCCcccccccc
Q 035678            5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS-------L-----NQYFGMYVNLPVGLNPDSFETSMDQ   72 (231)
Q Consensus         5 fweedentvlfklplasgtkqegvkvaiedhklfiseeagts-------l-----nqyfgmyvnlpvglnpdsfetsmdq   72 (231)
                      .|+.+++...+.+-|. |-+.+.++|.+++..|.|+=+--..       +     ...|---+.||.+.+.+   ..-=.
T Consensus         5 i~e~~~~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~---~A~~~   80 (90)
T cd06470           5 IEKTGENNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK---GAELE   80 (90)
T ss_pred             eEEcCCCeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC---eeEEe
Confidence            4565556666676665 7788899999999999999321111       1     12355557899988875   34446


Q ss_pred             ceeeEEEeec
Q 035678           73 TGLLTVRFKK   82 (231)
Q Consensus        73 tglltvrfkk   82 (231)
                      .|+|+|++.+
T Consensus        81 ~GvL~I~l~~   90 (90)
T cd06470          81 NGLLTIDLER   90 (90)
T ss_pred             CCEEEEEEEC
Confidence            7999999853

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=95.99  E-value=0.026  Score=40.24  Aligned_cols=73  Identities=21%  Similarity=0.309  Sum_probs=55.4

Q ss_pred             cccCceEEEEeecCccccccceEEEEeccceeeeccccc------ccccceeeeeecccccCCCccccccccceeeEEEe
Q 035678            7 EEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGT------SLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRF   80 (231)
Q Consensus         7 eedentvlfklplasgtkqegvkvaiedhklfiseeagt------slnqyfgmyvnlpvglnpdsfetsmdqtglltvrf   80 (231)
                      .|+++.+...+-| .|-+.+.++|.++++.|.|+=+.-.      ....-|---++||..++++.....+...|+|+++.
T Consensus         6 ~e~~~~~~v~~dl-PG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~l   84 (86)
T cd06475           6 RQTADRWKVSLDV-NHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEA   84 (86)
T ss_pred             EEcCCeEEEEEEC-CCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEEe
Confidence            3455555556554 4888999999999999999743211      12233666689999999999999999999999985

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=95.90  E-value=0.047  Score=36.01  Aligned_cols=70  Identities=20%  Similarity=0.372  Sum_probs=54.5

Q ss_pred             ccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeecee
Q 035678            6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLM   84 (231)
Q Consensus         6 weedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkklm   84 (231)
                      |.++++.|...+.+. |.+.+.++|-+++..+-|+=      .+|.-. +.||-.++|+.-...++. |.|.+++.|.-
T Consensus         1 W~Qt~~~v~i~i~~p-~v~~~~v~v~~~~~~l~i~~------~~~~~~-~~l~~~I~~e~~~~~~~~-~~l~i~L~K~~   70 (78)
T cd06469           1 WSQTDEDVKISVPLK-GVKTSKVDIFCSDLYLKVNF------PPYLFE-LDLAAPIDDEKSSAKIGN-GVLVFTLVKKE   70 (78)
T ss_pred             CcccCCEEEEEEEeC-CCccccceEEEecCEEEEcC------CCEEEE-EeCcccccccccEEEEeC-CEEEEEEEeCC
Confidence            888999999888877 78899999999987766632      344433 489999999987777766 67899988853

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=95.85  E-value=0.013  Score=40.56  Aligned_cols=58  Identities=31%  Similarity=0.457  Sum_probs=42.0

Q ss_pred             cccceEEEEeeceeEEeecccccc--------------ccCCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEK--------------KEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK  188 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnek--------------keggscesfvlphgvnpdgfetsmddpgvltvtfkk  188 (231)
                      +++|+-|-+.++...|-|+.-...              ..|.-+-+|.|| .++++....+++ -|+|+|++.|
T Consensus        22 ~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~~-dGvL~I~lPK   93 (93)
T cd06471          22 KKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKYE-NGVLKITLPK   93 (93)
T ss_pred             CHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEEE-CCEEEEEEcC
Confidence            578899988777666666553221              223335678899 799999999995 5999999965

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=95.35  E-value=0.075  Score=38.01  Aligned_cols=72  Identities=18%  Similarity=0.291  Sum_probs=54.8

Q ss_pred             ccCceEEEEeecCccccccceEEEEeccceeeeccc-------ccccccceeeeeecccccCCCccccccccceeeEEEe
Q 035678            8 EDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEA-------GTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRF   80 (231)
Q Consensus         8 edentvlfklplasgtkqegvkvaiedhklfiseea-------gtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrf   80 (231)
                      .+++.....+-+ .|-+.+-++|-++|..|.|+=+-       | ...+.|---+.||.+++|+....++...|.|+|+.
T Consensus         4 ~~~d~y~v~~dl-pG~~~edi~V~v~~~~L~I~g~~~~~~~~~~-~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~   81 (83)
T cd06476           4 SEDDKYQVFLDV-CHFTPDEITVRTVDNLLEVSARHPQRMDRHG-FVSREFTRTYILPMDVDPLLVRASLSHDGILCIQA   81 (83)
T ss_pred             ccCCeEEEEEEc-CCCCHHHeEEEEECCEEEEEEEEcceecCCC-EEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEe
Confidence            345555555543 47888999999999999996432       2 22334666689999999999999999999999986


Q ss_pred             e
Q 035678           81 K   81 (231)
Q Consensus        81 k   81 (231)
                      -
T Consensus        82 P   82 (83)
T cd06476          82 P   82 (83)
T ss_pred             c
Confidence            4

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=94.85  E-value=0.044  Score=33.32  Aligned_cols=58  Identities=38%  Similarity=0.587  Sum_probs=44.0

Q ss_pred             ccceEEEEeeceeEEeeccccc----cccCCceeeeeecCCCCCCCcccccCCCceEEEEeec
Q 035678          130 KEDLVVGVVDRQFLIIGQQLNE----KKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKK  188 (231)
Q Consensus       130 kedlvvgvvdrqfliigqqlne----kkeggscesfvlphgvnpdgfetsmddpgvltvtfkk  188 (231)
                      ++++-|-+-...+.|-++.-..    ...+.-.-.+-||+.++|+.....+++ |.|+|++.|
T Consensus        19 ~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~-~~l~i~l~K   80 (80)
T cd00298          19 KEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLEN-GVLEITLPK   80 (80)
T ss_pred             HHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEEC-CEEEEEEcC
Confidence            7788888888777777765422    122333557889999999998888887 999999875

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=94.83  E-value=0.21  Score=31.73  Aligned_cols=76  Identities=21%  Similarity=0.358  Sum_probs=56.4

Q ss_pred             ccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeeceee
Q 035678            6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMP   85 (231)
Q Consensus         6 weedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkklmp   85 (231)
                      |.+.++.|...+++.... .+.+.|.+++..+.|+=... . +.-|-.-+.|+--++|+.-.-++.. |.|.+++.|.-|
T Consensus         1 W~Q~~~~v~i~v~~~~~~-~~~~~v~~~~~~l~i~~~~~-~-~~~~~~~~~L~~~I~~~~s~~~~~~-~~l~i~L~K~~~   76 (84)
T cd06463           1 WYQTLDEVTITIPLKDVT-KKDVKVEFTPKSLTVSVKGG-G-GKEYLLEGELFGPIDPEESKWTVED-RKIEITLKKKEP   76 (84)
T ss_pred             CcccccEEEEEEEcCCCC-ccceEEEEecCEEEEEeeCC-C-CCceEEeeEccCccchhhcEEEEeC-CEEEEEEEECCC
Confidence            888999999999888776 88899999998888875432 1 1223344568999999965555644 889999888654

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>PRK10743 heat shock protein IbpA; Provisional

Probab=93.87  E-value=0.32  Score=37.94  Aligned_cols=75  Identities=17%  Similarity=0.287  Sum_probs=53.5

Q ss_pred             cccCceEEEEeecCccccccceEEEEeccceeeecccccc---cc-----cc---eeeeeecccccCCCcccccccccee
Q 035678            7 EEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS---LN-----QY---FGMYVNLPVGLNPDSFETSMDQTGL   75 (231)
Q Consensus         7 eedentvlfklplasgtkqegvkvaiedhklfiseeagts---ln-----qy---fgmyvnlpvglnpdsfetsmdqtgl   75 (231)
                      +++++.+.+.+-|+ |-+.+.++|.++|..|.|+=|.-..   -+     .+   |.--+.||.++++++   .-=+.|+
T Consensus        41 ee~~~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~---A~~~dGV  116 (137)
T PRK10743         41 LVDENHYRIAIAVA-GFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG---ANLVNGL  116 (137)
T ss_pred             EcCCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc---CEEeCCE
Confidence            35677777777665 8888999999999999998442111   11     12   444578999999984   3446799


Q ss_pred             eEEEeeceee
Q 035678           76 LTVRFKKLMP   85 (231)
Q Consensus        76 ltvrfkklmp   85 (231)
                      |+|++.|.-|
T Consensus       117 L~I~lPK~~~  126 (137)
T PRK10743        117 LYIDLERVIP  126 (137)
T ss_pred             EEEEEeCCCc
Confidence            9999988644

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=93.71  E-value=0.16  Score=36.24  Aligned_cols=60  Identities=22%  Similarity=0.433  Sum_probs=46.4

Q ss_pred             ccccccceEEEEeccceeeecccccc----cccc------eeeeeecccccCCCccccccccceeeEEEe
Q 035678           21 SGTKQEGVKVAIEDHKLFISEEAGTS----LNQY------FGMYVNLPVGLNPDSFETSMDQTGLLTVRF   80 (231)
Q Consensus        21 sgtkqegvkvaiedhklfiseeagts----lnqy------fgmyvnlpvglnpdsfetsmdqtglltvrf   80 (231)
                      .|-+.+-++|.+++..|-|+=+....    -.+|      |---++||..+++++...++.+.|+|+|+.
T Consensus        16 pG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~   85 (87)
T cd06481          16 RGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA   85 (87)
T ss_pred             CCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence            47888999999999999996442111    0112      344478999999999999999999999985

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=93.15  E-value=0.19  Score=37.31  Aligned_cols=65  Identities=25%  Similarity=0.378  Sum_probs=51.8

Q ss_pred             EEeec-CccccccceEEEEeccceeeec-------ccccccccceeeeeecccccCCCccccccccceeeEEEe
Q 035678           15 FKLPL-ASGTKQEGVKVAIEDHKLFISE-------EAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRF   80 (231)
Q Consensus        15 fklpl-asgtkqegvkvaiedhklfise-------eagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrf   80 (231)
                      |++-| ++|-+.|-++|-+.+..|.|+=       |.| ...+.|---+.||.++++++...++...|+|+|..
T Consensus        17 f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g-~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea   89 (91)
T cd06480          17 WKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGG-IVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA   89 (91)
T ss_pred             EEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCC-EEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence            45544 4788999999999999999952       223 33456666788999999999999999999999864

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=92.26  E-value=0.65  Score=36.75  Aligned_cols=77  Identities=25%  Similarity=0.378  Sum_probs=53.4

Q ss_pred             cccccCceEEEEeecCccccccceEEEEeccceeeecccccc------c-----ccceeeeeecccccCCCccccccccc
Q 035678            5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS------L-----NQYFGMYVNLPVGLNPDSFETSMDQT   73 (231)
Q Consensus         5 fweedentvlfklplasgtkqegvkvaiedhklfiseeagts------l-----nqyfgmyvnlpvglnpdsfetsmdqt   73 (231)
                      .||++++.+.+.+-|+ |-+.+-+.|.+++..|-|+=|.-..      +     ..-|---+.||..++++  . .-=..
T Consensus        37 I~e~~~~~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~-A~~~n  112 (142)
T PRK11597         37 IEKSDDNHYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--G-ATFVN  112 (142)
T ss_pred             EEEcCCCEEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--c-CEEcC
Confidence            3665566566655554 8889999999999999987553111      0     01255557899999998  3 44467


Q ss_pred             eeeEEEeeceee
Q 035678           74 GLLTVRFKKLMP   85 (231)
Q Consensus        74 glltvrfkklmp   85 (231)
                      |+|+|++.|..|
T Consensus       113 GVL~I~lPK~~~  124 (142)
T PRK11597        113 GLLHIDLIRNEP  124 (142)
T ss_pred             CEEEEEEeccCc
Confidence            999999987643

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=92.25  E-value=1.5  Score=27.81  Aligned_cols=76  Identities=20%  Similarity=0.337  Sum_probs=52.1

Q ss_pred             cccccccCceEEEEeecCc-cccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEee
Q 035678            3 SVFWEEDENTVLFKLPLAS-GTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFK   81 (231)
Q Consensus         3 svfweedentvlfklplas-gtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfk   81 (231)
                      ...|.+.++.|...+++.. ....+-++|.+++..+-++=-.+..  ..|-.-.+|.--++|+.-.-.+... -+.+..+
T Consensus         2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~--~~~~~~~~L~~~I~~~~s~~~~~~~-~i~i~L~   78 (79)
T PF04969_consen    2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG--KEYLLEGELFGEIDPDESTWKVKDN-KIEITLK   78 (79)
T ss_dssp             SEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS--CEEEEEEEBSS-BECCCEEEEEETT-EEEEEEE
T ss_pred             CeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC--ceEEEEEEEeeeEcchhcEEEEECC-EEEEEEE
Confidence            3579999999999999944 4678899999999999888433333  3445556788888888655555544 4444443

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=90.36  E-value=1.4  Score=29.09  Aligned_cols=76  Identities=18%  Similarity=0.291  Sum_probs=54.4

Q ss_pred             ccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeeceee
Q 035678            6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMP   85 (231)
Q Consensus         6 weedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkklmp   85 (231)
                      |.++++.|...+++. |...+.++|.++...+.|+=..+  -+.-|-..+.|+--++|+.-.... ..|.+.++++|.-+
T Consensus         2 W~Qt~~~v~i~v~~~-~~~~~~v~v~~~~~~l~i~~~~~--~~~~~~~~~~L~~~I~~~~s~~~~-~~~~vei~L~K~~~   77 (84)
T cd06466           2 WYQTDTSVTVTIYAK-NVDKEDVKVEFNEQSLSVSIILP--GGSEYQLELDLFGPIDPEQSKVSV-LPTKVEITLKKAEP   77 (84)
T ss_pred             ccccCCEEEEEEEEC-CCCHHHCEEEEecCEEEEEEECC--CCCeEEEecccccccCchhcEEEE-eCeEEEEEEEcCCC
Confidence            888888888888865 78788999999999998875543  111234556788888888443333 34668888888544

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=90.16  E-value=1  Score=32.88  Aligned_cols=67  Identities=21%  Similarity=0.326  Sum_probs=49.2

Q ss_pred             eEEEEeecCccccccceEEEEeccceeeeccccccc------cccee---eeeecccccCCCccccccccceeeEEE
Q 035678           12 TVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSL------NQYFG---MYVNLPVGLNPDSFETSMDQTGLLTVR   79 (231)
Q Consensus        12 tvlfklplasgtkqegvkvaiedhklfiseeagtsl------nqyfg---myvnlpvglnpdsfetsmdqtglltvr   79 (231)
                      .+.+.+-|. |-+.+.++|.++|..|-|+=|.-..-      ..++|   --+.||.+++++....++...|.|++.
T Consensus         9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~   84 (87)
T cd06482           9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE   84 (87)
T ss_pred             EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence            334444333 78889999999999999985432211      12333   457999999999999999999999874

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=89.48  E-value=2  Score=32.57  Aligned_cols=79  Identities=25%  Similarity=0.476  Sum_probs=55.2

Q ss_pred             ccccCceEEEEeecCccccccceEEEEeccceeeecccccc----------cccceeee---eecccccCCCcccccccc
Q 035678            6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS----------LNQYFGMY---VNLPVGLNPDSFETSMDQ   72 (231)
Q Consensus         6 weedentvlfklplasgtkqegvkvaiedhklfiseeagts----------lnqyfgmy---vnlpvglnpdsfetsmdq   72 (231)
                      +.|.++.+...+-|+ |-+.+-++|.+++..|.|+=|....          -..++|-|   +.||..++|+.-..+. .
T Consensus        45 i~e~~~~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~-~  122 (146)
T COG0071          45 IEETDDEYRITAELP-GVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY-K  122 (146)
T ss_pred             EEEcCCEEEEEEEcC-CCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEe-e
Confidence            344444555555543 7779999999999999998655331          11123444   7899999999754444 5


Q ss_pred             ceeeEEEeeceeec
Q 035678           73 TGLLTVRFKKLMPI   86 (231)
Q Consensus        73 tglltvrfkklmpi   86 (231)
                      .|+|+|++.|.-|-
T Consensus       123 nGvL~I~lpk~~~~  136 (146)
T COG0071         123 NGLLTVTLPKAEPE  136 (146)
T ss_pred             CcEEEEEEeccccc
Confidence            79999999998774

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=88.11  E-value=2.4  Score=28.22  Aligned_cols=76  Identities=22%  Similarity=0.341  Sum_probs=54.1

Q ss_pred             cccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeecee
Q 035678            5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLM   84 (231)
Q Consensus         5 fweedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkklm   84 (231)
                      .|.+.++.|...+++..+...+-++|.+++..+-|+=..    +.++ ..-.|.-.++|+.=--+++....+.++++|--
T Consensus         2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~----~~~~-l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~   76 (85)
T cd06467           2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG----GEPL-LDGELYAKVKVDESTWTLEDGKLLEITLEKRN   76 (85)
T ss_pred             EEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC----CCce-EcCcccCceeEcCCEEEEeCCCEEEEEEEECC
Confidence            599999999999999999999999999999888887432    1221 22357777788754345555345777777754


Q ss_pred             e
Q 035678           85 P   85 (231)
Q Consensus        85 p   85 (231)
                      |
T Consensus        77 ~   77 (85)
T cd06467          77 E   77 (85)
T ss_pred             C
Confidence            3

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=86.61  E-value=2.8  Score=26.44  Aligned_cols=58  Identities=17%  Similarity=0.154  Sum_probs=41.9

Q ss_pred             ccceEEEEeeceeEEeeccccccccCCceeeeeecCCCCCCCcccccCCCceEEEEeecCCC
Q 035678          130 KEDLVVGVVDRQFLIIGQQLNEKKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPS  191 (231)
Q Consensus       130 kedlvvgvvdrqfliigqqlnekkeggscesfvlphgvnpdgfetsmddpgvltvtfkkkps  191 (231)
                      ++|+-|-+-++.+-|-.+.-   ..+.-.-.+-|+|-|+|+.-.-++.+ |.|.|++.|+..
T Consensus        19 ~~~~~v~~~~~~l~i~~~~~---~~~~~~~~~~L~~~I~~~~s~~~~~~-~~l~i~L~K~~~   76 (84)
T cd06463          19 KKDVKVEFTPKSLTVSVKGG---GGKEYLLEGELFGPIDPEESKWTVED-RKIEITLKKKEP   76 (84)
T ss_pred             ccceEEEEecCEEEEEeeCC---CCCceEEeeEccCccchhhcEEEEeC-CEEEEEEEECCC
Confidence            67787877776666655422   11223566779999999987777755 999999998765

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=84.45  E-value=3.7  Score=26.88  Aligned_cols=54  Identities=17%  Similarity=0.132  Sum_probs=37.6

Q ss_pred             ccccceEEEEeeceeEEeeccccccccCCceeeeeecCCCCCCCcccccCCCceEEEEeecCC
Q 035678          128 TKKEDLVVGVVDRQFLIIGQQLNEKKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKP  190 (231)
Q Consensus       128 tkkedlvvgvvdrqfliigqqlnekkeggscesfvlphgvnpdgfetsmddpgvltvtfkkkp  190 (231)
                      .+++|+-|=+-++.+.|-+.+        -=-.+-|||.|+|+.-...+++ |.|.|++.|..
T Consensus        17 v~~~~v~v~~~~~~l~i~~~~--------~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~K~~   70 (78)
T cd06469          17 VKTSKVDIFCSDLYLKVNFPP--------YLFELDLAAPIDDEKSSAKIGN-GVLVFTLVKKE   70 (78)
T ss_pred             CccccceEEEecCEEEEcCCC--------EEEEEeCcccccccccEEEEeC-CEEEEEEEeCC
Confidence            356777777766666554411        1123469999999987777754 89999999864

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=80.63  E-value=10  Score=26.12  Aligned_cols=74  Identities=15%  Similarity=0.275  Sum_probs=50.9

Q ss_pred             cccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeece
Q 035678            5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKL   83 (231)
Q Consensus         5 fweedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkkl   83 (231)
                      -|....+.|...+|+..+++.+.++|.++...+.++=-.+    +.+ +.-+|.-.++||.---.+.....|.+.+.|.
T Consensus         2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~----~~~-~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~   75 (85)
T cd06493           2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQ----APL-LEGKLYSSIDHESSTWIIKENKSLEVSLIKK   75 (85)
T ss_pred             ccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCC----CeE-EeCcccCcccccCcEEEEeCCCEEEEEEEEC
Confidence            3888888899999998999999999999999888852111    122 3336777888876543332223466776664

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	231
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	4e-14
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	2e-07
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	1e-09
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	3e-09
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	8e-09
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	2e-08
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	2e-07
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	3e-07
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	1e-06
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	2e-06
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	1e-05

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314

 Score = 69.5 bits (169), Expect = 4e-14
 Identities = 26/212 (12%), Positives = 62/212 (29%), Gaps = 29/212 (13%)

Query: 1   MHSVFWEEDENTVLFKLPL-ASGTKQEGVKVAIEDHKLFIS------EEAGTSLNQYFGM 53
           +   +    +  + FK+       K E + +  + +KL +                    
Sbjct: 100 LKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRS 159

Query: 54  YVNLPVGLNPDSFETSMDQTGLLTVRFKKLMPINSKLSCSTVKSSCDMAPMGWLEP---- 109
              LP  ++ +  + ++    +L +      P    +  S  K                 
Sbjct: 160 IP-LPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVK 218

Query: 110 --------DDKEANGVIHSKAGLSAETKKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-- 159
                     ++ +  IH +  +      +D+ V     +  + G    E+K   +    
Sbjct: 219 NKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSE 278

Query: 160 ------SFVLPHGVNPDGFETSMDDPGVLTVT 185
                 +FV P  V+    +  + D G++ V 
Sbjct: 279 HREFYKAFVTPEVVDASKTQAEIVD-GLMVVE 309

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 17/148 (11%), Positives = 41/148 (27%), Gaps = 23/148 (15%)

Query: 52  GMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMPINSKLSCSTVKSSCDMAPMGWLEPDD 111
            ++   P     ++FE+ M +          + P              +    G L+   
Sbjct: 56  NLFSLEPFTAMDNAFESVMKE-------MSAIQP-------REFHPELEYTQPGELDFLK 101

Query: 112 KEANGVIHSKAGLSAE-----TKKEDLVVGVVDRQFLIIGQQLNEKKEGGSCESFV---- 162
                    +            K E++ +     + ++  Q+     +    ES      
Sbjct: 102 DAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIP 161

Query: 163 LPHGVNPDGFETSMDDPGVLTVTFKKKP 190
           LP  V+ +  + ++    VL +      
Sbjct: 162 LPPSVDRNHIQATITTDDVLVIEAPVNE 189

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-----SFVLPHGVNPDGFETSMDDPGVLT 183
             EDL V V +    I G+    + + G         + LP  V+      S+   G+LT
Sbjct: 24  SPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLT 83

Query: 184 VTFKKKPSKDGKKKKEKI 201
            +  K PS       E+ 
Sbjct: 84  FSGPKIPSGVDAGHSERA 101

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-----SFVLPHGVNPDGFETSMDDPGVLT 183
             E++ V VV     +  +      E G         + LP GV+P    +++   GVL+
Sbjct: 23  SPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLS 82

Query: 184 VTFKKKPSKDGKKKKEKI 201
           +      ++         
Sbjct: 83  IQATPASAQASLPSPPAA 100

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 14/86 (16%)

Query: 129 KKEDLVVGVVDRQFLII---GQQLNEKKEG---------GSCE-SFVLPHGVNPDGFETS 175
           KKE++ V V D   L++     +  E K           G     F L      +  +  
Sbjct: 65  KKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAG 124

Query: 176 MDDPGVLTVTFKKKPSKDGKKKKEKI 201
           +++ GVLTVT  K   K  + K  +I
Sbjct: 125 LEN-GVLTVTVPKAEVKKPEVKAIQI 149

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-----SFVLPHGVNPDGFETSMDDPGVLT 183
             E+L V V+     + G+    + E G         + +P  V+P    +S+   GVLT
Sbjct: 85  SPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLT 144

Query: 184 VTFKKKPSKDGKKK 197
           V   +K     ++ 
Sbjct: 145 VNGPRKQVSGPERT 158

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-----SFVLPHGVNPDGFETSMDDPGVLT 183
             E+L V V+     + G+    + E G         + +P  V+P    +SM   GVLT
Sbjct: 18  SPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLT 77

Query: 184 VTFKKKPSKDGKK 196
           V   +K     ++
Sbjct: 78  VNGPRKQVSGPER 90

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEGGSCE-----SFVLPHGVNPDGFETSMDDPGVLT 183
             ++L V   D    I G+    + E G         + LP GV+P    +S+   G LT
Sbjct: 19  APDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLT 78

Query: 184 VTFKKK 189
           V     
Sbjct: 79  VEAPMP 84

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 14/83 (16%)

Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEG------------GSCE-SFVLPHGVNPDGFETS 175
            KED+++  V     I  ++                        +  LP  V  +     
Sbjct: 78  NKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAK 137

Query: 176 MDDPGVLTVTFKKKPSKDGKKKK 198
            ++ GVL+V   K  S   K   
Sbjct: 138 FEN-GVLSVILPKAESSIKKGIN 159

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 13/74 (17%)

Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKEG-----------GSCE-SFVLPHGVNPDGFETSM 176
               + V +      I G++ +E               GS    F LP   + DG   + 
Sbjct: 26  DPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAG 85

Query: 177 DDPGVLTVTFKKKP 190
            + GVL +   K+P
Sbjct: 86  RN-GVLEIRIPKRP 98

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 13/81 (16%)

Query: 129 KKEDLVVGVVDRQFLII-GQQLNEKKEGGSCE--------SFVLPHGVNPDGF-ETSMDD 178
            KE +   V  +  LII  ++   +                  LP+ V  D       ++
Sbjct: 46  NKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYEN 105

Query: 179 PGVLTVTFKKKPSKDGKKKKE 199
            GVLT+      +     K E
Sbjct: 106 -GVLTIRIPIAGTS--VFKFE 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	98.91
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	97.83
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	97.71
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	97.58
4fei_A	102	Heat shock protein-related protein; stress respons	97.54
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	97.54
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	97.52
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	97.51
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	97.5
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	97.4
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	97.39
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	97.36
4fei_A	102	Heat shock protein-related protein; stress respons	97.36
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	97.29
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	97.21
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	97.21
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	96.9
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	96.87
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	96.71
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	96.65
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	96.59
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	96.3
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	90.86
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	88.69
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	85.23
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	82.0

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=98.91  E-value=9.3e-09  Score=87.27  Aligned_cols=173  Identities=14%  Similarity=0.203  Sum_probs=116.3

Q ss_pred             eEEEEeecCccccccceEEEEeccceeeeccccc-----ccccceeeeeecccccCCCccccccccceeeEEEeeceeec
Q 035678           12 TVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGT-----SLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKLMPI   86 (231)
Q Consensus        12 tvlfklplasgtkqegvkvaiedhklfiseeagt-----slnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkklmpi   86 (231)
                      .+...+-| .|-+.|-++|.++|..|.|+-|...     .-..-|---+.||.+++++....++...|+|+|+..|.-|-
T Consensus       113 ~~~v~~dl-PG~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~nGVL~I~lPK~~~~  191 (314)
T 2bol_A          113 HFKVYFNV-KNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPN  191 (314)
T ss_dssp             EEEEEEEC-TTCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSSSEEEEEEEBSSCC
T ss_pred             EEEEEEEC-CCCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCCCEEEEEEeccCcc
Confidence            45555554 3888899999999999999865432     11123444568999999999999999899999999987664


Q ss_pred             cccccccccccccccC----CCcC-----------CCCCccccCceeecccCCCccccccceEEEEeeceeEEeeccccc
Q 035678           87 NSKLSCSTVKSSCDMA----PMGW-----------LEPDDKEANGVIHSKAGLSAETKKEDLVVGVVDRQFLIIGQQLNE  151 (231)
Q Consensus        87 nsklscstvksscdma----pmgw-----------lepddkeangvihskaglsaetkkedlvvgvvdrqfliigqqlne  151 (231)
                      ...+.-   ..+=.++    +--|           -.-++.+....+|-.+-|..--++||+-|-|.+....|-|++-.+
T Consensus       192 ~~~I~i---t~~~ql~Iqp~s~~q~~l~vkg~~~~~i~e~~~~~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~  268 (314)
T 2bol_A          192 YKAIKL---SPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKE  268 (314)
T ss_dssp             TTTEEE---ETTTEEEECCBCCSSCCSCCCSCCEEEEEECTTSCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC--
T ss_pred             cceeec---ccCCccCcCCCccccceeecccCCCCcEEEecCCCcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEecc
Confidence            333211   0000111    1122           111223344456666655335678999999998888888876544


Q ss_pred             ccc--------CCceeeeeecCCCCCCCcccccCCCceEEEEeecC
Q 035678          152 KKE--------GGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKK  189 (231)
Q Consensus       152 kke--------ggscesfvlphgvnpdgfetsmddpgvltvtfkkk  189 (231)
                      +.+        |--.-+|.||.+|+++....++.| |||||+.-|.
T Consensus       269 ~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~d-GvL~i~~Pk~  313 (314)
T 2bol_A          269 EKTENASHSEHREFYKAFVTPEVVDASKTQAEIVD-GLMVVEAPLF  313 (314)
T ss_dssp             ----------CEEEEEEEECSSEECGGGCEEEEET-TEEEEEEEEE
T ss_pred             CCceEEEEEeeeEEEEEEECCCCcChHHeEEEEeC-CEEEEEEecC
Confidence            321        223568999999999999999986 9999998764

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=97.83  E-value=3.7e-05  Score=52.76  Aligned_cols=62  Identities=24%  Similarity=0.451  Sum_probs=48.5

Q ss_pred             cccceEEEEeeceeEEeecccccccc------------CCceeeeeecCCCCCCCcccccCCCceEEEEeecCCC
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKKE------------GGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPS  191 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekke------------ggscesfvlphgvnpdgfetsmddpgvltvtfkkkps  191 (231)
                      +++|+-|-+-++...|-|+.-.+..+            |.-.-+|.||.+|+++....++.| |||+|++.|++.
T Consensus        26 ~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~-GvL~I~~pK~~~   99 (100)
T 3gla_A           26 DPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAGRN-GVLEIRIPKRPA   99 (100)
T ss_dssp             CGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEEEET-TEEEEEEEBC--
T ss_pred             CHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEEEeC-CEEEEEEecCCC
Confidence            57899999999888888876544322            223457899999999999999987 999999999864

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=97.71  E-value=9.2e-05  Score=52.18  Aligned_cols=65  Identities=22%  Similarity=0.405  Sum_probs=51.5

Q ss_pred             cccceEEEEeeceeEEeeccccccccCC-----ceeeeeecCCCCCCCcccccCCCceEEEEeecCCCCc
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKKEGG-----SCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSKD  193 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekkegg-----scesfvlphgvnpdgfetsmddpgvltvtfkkkpskd  193 (231)
                      ++||+-|-|.++...|-|+.-.+..+++     -.-+|.||.+|+++....++..-|||+|++.|++...
T Consensus        23 ~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~I~lPK~~~~~   92 (101)
T 2wj5_A           23 SPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQA   92 (101)
T ss_dssp             CGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEEEEECBCCCCC
T ss_pred             cHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEEEEEECCCcCC
Confidence            5789999999998888888754332222     2358999999999999999977799999999876543

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=97.58  E-value=0.00013  Score=50.19  Aligned_cols=64  Identities=28%  Similarity=0.405  Sum_probs=48.7

Q ss_pred             cccceEEEEeeceeEEeeccccccccCC-----ceeeeeecCCCCCCCcccccCCCceEEEEeecCCCC
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKKEGG-----SCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSK  192 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekkegg-----scesfvlphgvnpdgfetsmddpgvltvtfkkkpsk  192 (231)
                      +++|+-|-+.++...|-|+.-.+..+++     -.-+|.||.+|+++....++..-|||+|++.|++..
T Consensus        18 ~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~pK~~~~   86 (90)
T 2y1y_A           18 SPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPRKQVS   86 (90)
T ss_dssp             CGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEECBC---
T ss_pred             cHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEcCCCC
Confidence            5789999999988888887644332222     235789999999999999997779999999887543

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=97.54  E-value=0.00013  Score=51.09  Aligned_cols=62  Identities=24%  Similarity=0.361  Sum_probs=47.8

Q ss_pred             cccceEEEEeeceeEEeeccccc-------cccCCceeeeeecCCCCCCCcccccCCCceEEEEeecCCC
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNE-------KKEGGSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPS  191 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlne-------kkeggscesfvlphgvnpdgfetsmddpgvltvtfkkkps  191 (231)
                      +++|+-|-+-+....|-|+.-.+       ...|.-.-+|.||.+|+++....++.| |||+|++.|+..
T Consensus        28 ~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~-GvL~I~lpK~~~   96 (102)
T 4fei_A           28 DAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAG-GVLTVRFEKLRP   96 (102)
T ss_dssp             CGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEET-TEEEEEEEBSSC
T ss_pred             chHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEEC-CEEEEEEEccCc
Confidence            57899999988888887875221       122233457889999999999999975 999999988753

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=97.54  E-value=7.7e-05  Score=55.84  Aligned_cols=86  Identities=24%  Similarity=0.357  Sum_probs=58.5

Q ss_pred             ccCCCcCCCCCccccCceeecccCCCccccccceEEEEeeceeEEeecccccc-------------ccCCceeeeeecCC
Q 035678          100 DMAPMGWLEPDDKEANGVIHSKAGLSAETKKEDLVVGVVDRQFLIIGQQLNEK-------------KEGGSCESFVLPHG  166 (231)
Q Consensus       100 dmapmgwlepddkeangvihskaglsaetkkedlvvgvvdrqfliigqqlnek-------------keggscesfvlphg  166 (231)
                      ...|+-+.|-+|     -+.-.+-|.- -++||+-|-|.+....|-|+.-.+.             ..|.-.-+|.||.+
T Consensus        55 ~~~pvdi~e~~~-----~~~v~~dlPG-~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~  128 (161)
T 4eld_A           55 GFMPISIIEGDQ-----HIKVIAWLPG-VNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPAT  128 (161)
T ss_dssp             SCCCEEEEECSS-----EEEEEEECTT-CCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSC
T ss_pred             cccceeEEEeCC-----EEEEEEECCC-CChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCC
Confidence            344555555433     2233333322 3578999999998887878765422             11233467899999


Q ss_pred             CCCCCcccccCCCceEEEEeecCCCC
Q 035678          167 VNPDGFETSMDDPGVLTVTFKKKPSK  192 (231)
Q Consensus       167 vnpdgfetsmddpgvltvtfkkkpsk  192 (231)
                      |+++....++.| |||+|++.|+...
T Consensus       129 vd~~~i~A~~~n-GvL~I~lpK~~~~  153 (161)
T 4eld_A          129 VKEENASAKFEN-GVLSVILPKAESS  153 (161)
T ss_dssp             BCGGGCEEEEET-TEEEEEEEBCGGG
T ss_pred             cccccEEEEEEC-CEEEEEEEcCCCC
Confidence            999999999975 9999999987543

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=97.52  E-value=0.00015  Score=49.68  Aligned_cols=62  Identities=26%  Similarity=0.374  Sum_probs=47.0

Q ss_pred             ccccceEEEEeeceeEEeeccccccccC-----CceeeeeecCCCCCCCcccccCCCceEEEEeecC
Q 035678          128 TKKEDLVVGVVDRQFLIIGQQLNEKKEG-----GSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKK  189 (231)
Q Consensus       128 tkkedlvvgvvdrqfliigqqlnekkeg-----gscesfvlphgvnpdgfetsmddpgvltvtfkkk  189 (231)
                      -++||+-|-|-++...|-|+.-.+..+.     .-.-+|.||.+|+++....++..-|||+|+..|+
T Consensus        18 ~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lPK~   84 (85)
T 3q9p_A           18 FAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMP   84 (85)
T ss_dssp             TCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEECC
T ss_pred             CChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEEcC
Confidence            3688999999998877878754433222     2345789999999999999998779999999774

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=97.51  E-value=0.00024  Score=50.53  Aligned_cols=65  Identities=28%  Similarity=0.381  Sum_probs=50.9

Q ss_pred             ccccceEEEEeeceeEEeeccccccccCC-----ceeeeeecCCCCCCCcccccCCCceEEEEeecCCCC
Q 035678          128 TKKEDLVVGVVDRQFLIIGQQLNEKKEGG-----SCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSK  192 (231)
Q Consensus       128 tkkedlvvgvvdrqfliigqqlnekkegg-----scesfvlphgvnpdgfetsmddpgvltvtfkkkpsk  192 (231)
                      -++||+-|-|.++...|-|++-.+..+++     -.-+|.||.+|+++....++.+-|||+|++.|++..
T Consensus        23 ~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL~I~~PK~~~~   92 (106)
T 3l1e_A           23 FSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSG   92 (106)
T ss_dssp             SCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEEEEEEEBCCCC
T ss_pred             CChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEccCcc
Confidence            36789999999988888887533222222     255789999999999999996669999999998764

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=97.50  E-value=0.00016  Score=56.46  Aligned_cols=63  Identities=27%  Similarity=0.403  Sum_probs=49.4

Q ss_pred             cccceEEEEeeceeEEeeccccccccCC-----ceeeeeecCCCCCCCcccccCCCceEEEEeecCCC
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKKEGG-----SCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPS  191 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekkegg-----scesfvlphgvnpdgfetsmddpgvltvtfkkkps  191 (231)
                      ++||+-|-|.|....|-|+.-.+..++|     -.-+|.||.+|+++....++..-|||+|++.|++.
T Consensus        85 ~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I~lPK~~~  152 (175)
T 2klr_A           85 SPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQV  152 (175)
T ss_dssp             CGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEEEEECC--
T ss_pred             ChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEEEEECCCC
Confidence            5789999999998888887643333332     24678999999999999999777999999999764

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=97.40  E-value=0.00091  Score=47.03  Aligned_cols=82  Identities=13%  Similarity=0.207  Sum_probs=63.7

Q ss_pred             ccccccCceEEEEeecCccccccceEEEEeccceeeeccccc------ccccceeeeeecccccCCCccccccccceeeE
Q 035678            4 VFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGT------SLNQYFGMYVNLPVGLNPDSFETSMDQTGLLT   77 (231)
Q Consensus         4 vfweedentvlfklplasgtkqegvkvaiedhklfiseeagt------slnqyfgmyvnlpvglnpdsfetsmdqtgllt   77 (231)
                      +-|.|+++.+.+.+-|. |-+.+.++|.+++..|.|+=+...      .+.+-|---+.||.+.+++....++...|+|+
T Consensus         4 vdi~e~~~~~~v~~dlP-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~   82 (101)
T 2wj5_A            4 AQVPTDPGYFSVLLDVK-HFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLS   82 (101)
T ss_dssp             CCCCCCSSCEEEEEECT-TSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEE
T ss_pred             EEEEEeCCEEEEEEECC-CCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEE
Confidence            34566777777777665 888899999999999999754321      12223777789999999999999998899999


Q ss_pred             EEeeceeec
Q 035678           78 VRFKKLMPI   86 (231)
Q Consensus        78 vrfkklmpi   86 (231)
                      |++.|..+-
T Consensus        83 I~lPK~~~~   91 (101)
T 2wj5_A           83 IQATPASAQ   91 (101)
T ss_dssp             EEECBCCCC
T ss_pred             EEEECCCcC
Confidence            999886543

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=97.39  E-value=0.00097  Score=45.60  Aligned_cols=78  Identities=22%  Similarity=0.280  Sum_probs=58.5

Q ss_pred             ccccccCceEEEEeecCccccccceEEEEeccceeeecccccc--------c-----ccceeeeeecccccCCCcccccc
Q 035678            4 VFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS--------L-----NQYFGMYVNLPVGLNPDSFETSM   70 (231)
Q Consensus         4 vfweedentvlfklplasgtkqegvkvaiedhklfiseeagts--------l-----nqyfgmyvnlpvglnpdsfetsm   70 (231)
                      +-|.|+++.+.+.+-|. |-+.+.++|.+++..|.|+-+....        .     ...|---+.||.+++++....++
T Consensus         7 ~di~e~~~~~~v~~~lP-G~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~   85 (100)
T 3gla_A            7 VDIKEEVNHFVLYADLP-GIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAG   85 (100)
T ss_dssp             EEEEECSSEEEEEEECT-TSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEEE
T ss_pred             EEEEECCCEEEEEEECC-CCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEEE
Confidence            34567777777777664 7888999999999999998332211        1     01244457899999999999999


Q ss_pred             ccceeeEEEeece
Q 035678           71 DQTGLLTVRFKKL   83 (231)
Q Consensus        71 dqtglltvrfkkl   83 (231)
                      . .|+|+|++.|.
T Consensus        86 ~-~GvL~I~~pK~   97 (100)
T 3gla_A           86 R-NGVLEIRIPKR   97 (100)
T ss_dssp             E-TTEEEEEEEBC
T ss_pred             e-CCEEEEEEecC
Confidence            6 59999999874

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=97.36  E-value=0.0002  Score=53.71  Aligned_cols=85  Identities=31%  Similarity=0.486  Sum_probs=57.3

Q ss_pred             ccCCCcCCCCCccccCceee-cccCCCccccccceEEEEee-ceeEEeeccccccc------------cCCceeeeeecC
Q 035678          100 DMAPMGWLEPDDKEANGVIH-SKAGLSAETKKEDLVVGVVD-RQFLIIGQQLNEKK------------EGGSCESFVLPH  165 (231)
Q Consensus       100 dmapmgwlepddkeangvih-skaglsaetkkedlvvgvvd-rqfliigqqlnekk------------eggscesfvlph  165 (231)
                      ...++-|.|-+|.-   +|. .-.|+    +++|+-|-|.+ +...|-|+.-.+..            .|.-.-+|.||.
T Consensus        42 ~~p~~di~e~~d~~---~v~~dlPGv----~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~  114 (151)
T 1gme_A           42 ANARMDWKETPEAH---VFKADLPGV----KKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLE  114 (151)
T ss_dssp             GGGCEEEEECSSEE---EEEEECTTC----CGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSS
T ss_pred             cCCceEEEEcCCEE---EEEEECCCC----ChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCC
Confidence            34566776655421   222 22344    57899999965 56666676443321            234456889999


Q ss_pred             CCCCCCcccccCCCceEEEEeecCCCC
Q 035678          166 GVNPDGFETSMDDPGVLTVTFKKKPSK  192 (231)
Q Consensus       166 gvnpdgfetsmddpgvltvtfkkkpsk  192 (231)
                      +|+++....++.| |||+|++.|+...
T Consensus       115 ~vd~~~i~A~~~n-GvL~I~lPK~~~~  140 (151)
T 1gme_A          115 DAKVEEVKAGLEN-GVLTVTVPKAEVK  140 (151)
T ss_dssp             CCCGGGCEEEEET-TEEEEEEECCCCC
T ss_pred             CccccceEEEEEC-CEEEEEEEccCcC
Confidence            9999999999964 9999999987654

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=97.36  E-value=0.00082  Score=46.91  Aligned_cols=79  Identities=27%  Similarity=0.385  Sum_probs=59.6

Q ss_pred             cccccCceEEEEeecCccccccceEEEEeccceeeecccccc-----cccc---eeeeeecccccCCCccccccccceee
Q 035678            5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS-----LNQY---FGMYVNLPVGLNPDSFETSMDQTGLL   76 (231)
Q Consensus         5 fweedentvlfklplasgtkqegvkvaiedhklfiseeagts-----lnqy---fgmyvnlpvglnpdsfetsmdqtgll   76 (231)
                      -|.|+++.+.+.+-|. |-+.+.++|.+++..|.|+=+.-..     ....   |---+.||.+++++....++. .|+|
T Consensus        10 di~e~~~~~~v~~~lP-G~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~-~GvL   87 (102)
T 4fei_A           10 DWRDAGTHLDLLLDVP-GVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLA-GGVL   87 (102)
T ss_dssp             EEEEETTEEEEEEECT-TCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEE-TTEE
T ss_pred             EEEEcCCEEEEEEECC-CCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEE-CCEE
Confidence            3566677777777665 8889999999999999997443111     1112   344478999999999999995 7999


Q ss_pred             EEEeeceee
Q 035678           77 TVRFKKLMP   85 (231)
Q Consensus        77 tvrfkklmp   85 (231)
                      +|++.|.-|
T Consensus        88 ~I~lpK~~~   96 (102)
T 4fei_A           88 TVRFEKLRP   96 (102)
T ss_dssp             EEEEEBSSC
T ss_pred             EEEEEccCc
Confidence            999998755

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=97.29  E-value=0.0013  Score=46.73  Aligned_cols=80  Identities=16%  Similarity=0.229  Sum_probs=62.2

Q ss_pred             ccccCceEEEEeecCccccccceEEEEeccceeeecccc------cccccceeeeeecccccCCCccccccccceeeEEE
Q 035678            6 WEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAG------TSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVR   79 (231)
Q Consensus         6 weedentvlfklplasgtkqegvkvaiedhklfiseeag------tslnqyfgmyvnlpvglnpdsfetsmdqtglltvr   79 (231)
                      +.|+++.+.+.+-|. |-+.+.++|.+++..|.|+-+..      ....+-|---+.||.+.+++....++...|+|+|+
T Consensus         7 i~e~~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL~I~   85 (106)
T 3l1e_A            7 VRSDRDKFVIFLDVK-HFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFS   85 (106)
T ss_dssp             EEECSSEEEEEEECT-TSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEEEEE
T ss_pred             EEEcCCEEEEEEECC-CCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEE
Confidence            445666666666664 88899999999999999985321      11223377778999999999999999888999999


Q ss_pred             eeceeec
Q 035678           80 FKKLMPI   86 (231)
Q Consensus        80 fkklmpi   86 (231)
                      +.|.-|-
T Consensus        86 ~PK~~~~   92 (106)
T 3l1e_A           86 GPKIPSG   92 (106)
T ss_dssp             EEBCCCC
T ss_pred             EEccCcc
Confidence            9987663

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=97.21  E-value=0.00045  Score=49.47  Aligned_cols=61  Identities=21%  Similarity=0.280  Sum_probs=47.8

Q ss_pred             cccceEEEEee-ceeEEeeccccccccC---------CceeeeeecCCCCCCCc-ccccCCCceEEEEeecCCC
Q 035678          129 KKEDLVVGVVD-RQFLIIGQQLNEKKEG---------GSCESFVLPHGVNPDGF-ETSMDDPGVLTVTFKKKPS  191 (231)
Q Consensus       129 kkedlvvgvvd-rqfliigqqlnekkeg---------gscesfvlphgvnpdgf-etsmddpgvltvtfkkkps  191 (231)
                      +++|+-|-+.+ +...|-|+.-.+. ++         .-.-+|.||.+|+++.. ..++.| |||+|++.|++.
T Consensus        46 ~~edi~V~v~~~~~L~I~g~~~~~~-~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~~~-GvL~I~lPK~~~  117 (123)
T 3aab_A           46 NKEKIKARVSGQNELIIEAEREITE-PGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYEN-GVLTIRIPIAGT  117 (123)
T ss_dssp             CGGGCEEEEETTTEEEEEEECCCCC-CSCEEEECSCSEEEEEEECSSEECTTCCCEEEEET-TEEEEEEEGGGE
T ss_pred             CHHHEEEEEeCCCEEEEEEEEeccC-CCeEEEEEEeEEEEEEEECCCCcCcchhCeeEEcC-CEEEEEEEcCCC
Confidence            57899999999 8888888765443 22         12457899999999999 888865 999999988653

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=97.21  E-value=0.0013  Score=45.10  Aligned_cols=76  Identities=17%  Similarity=0.246  Sum_probs=56.3

Q ss_pred             cCceEEEEeecCccccccceEEEEeccceeeecccc------cccccceeeeeecccccCCCccccccccceeeEEEeec
Q 035678            9 DENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAG------TSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKK   82 (231)
Q Consensus         9 dentvlfklplasgtkqegvkvaiedhklfiseeag------tslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkk   82 (231)
                      +++.+.+.+-|. |-+.+.++|.+++..|.|+-+..      ..+.+-|---+.||.+++++....++...|+|+|++.|
T Consensus         4 ~~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~pK   82 (90)
T 2y1y_A            4 EKDRFSVNLDVK-HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPR   82 (90)
T ss_dssp             --CCEEEEEECT-TSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEECB
T ss_pred             CCCEEEEEEECC-CCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEc
Confidence            445555555554 78889999999999999975532      11223366778999999999999999889999999988


Q ss_pred             eee
Q 035678           83 LMP   85 (231)
Q Consensus        83 lmp   85 (231)
                      .-+
T Consensus        83 ~~~   85 (90)
T 2y1y_A           83 KQV   85 (90)
T ss_dssp             C--
T ss_pred             CCC
Confidence            654

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=96.90  E-value=0.0034  Score=46.86  Aligned_cols=80  Identities=15%  Similarity=0.196  Sum_probs=60.8

Q ss_pred             ccccccCceEEEEeecCccccccceEEEEeccceeeecccccc--------------cccceeeeeecccccCCCccccc
Q 035678            4 VFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTS--------------LNQYFGMYVNLPVGLNPDSFETS   69 (231)
Q Consensus         4 vfweedentvlfklplasgtkqegvkvaiedhklfiseeagts--------------lnqyfgmyvnlpvglnpdsfets   69 (231)
                      +-+.|+++.+.+.+-| .|-+.|.++|.+++..|.|+-+....              -...|---+.||.+++++....+
T Consensus        59 vdi~e~~~~~~v~~dl-PG~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~  137 (161)
T 4eld_A           59 ISIIEGDQHIKVIAWL-PGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAK  137 (161)
T ss_dssp             EEEEECSSEEEEEEEC-TTCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEE
T ss_pred             eeEEEeCCEEEEEEEC-CCCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEE
Confidence            4466778888888877 47788999999999999996433220              01124455789999999999999


Q ss_pred             cccceeeEEEeeceee
Q 035678           70 MDQTGLLTVRFKKLMP   85 (231)
Q Consensus        70 mdqtglltvrfkklmp   85 (231)
                      +. .|+|+|++.|.-+
T Consensus       138 ~~-nGvL~I~lpK~~~  152 (161)
T 4eld_A          138 FE-NGVLSVILPKAES  152 (161)
T ss_dssp             EE-TTEEEEEEEBCGG
T ss_pred             EE-CCEEEEEEEcCCC
Confidence            95 8999999988543

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=96.87  E-value=0.0047  Score=42.20  Aligned_cols=74  Identities=19%  Similarity=0.282  Sum_probs=56.5

Q ss_pred             ccCceEEEEeecCccccccceEEEEeccceeeeccccc------ccccceeeeeecccccCCCccccccccceeeEEEee
Q 035678            8 EDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGT------SLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFK   81 (231)
Q Consensus         8 edentvlfklplasgtkqegvkvaiedhklfiseeagt------slnqyfgmyvnlpvglnpdsfetsmdqtglltvrfk   81 (231)
                      |+++.+.+.+-|. |-+.+.++|.+++..|.|+=+.-.      .....|---+.||.+.+++....++...|+|+|+.-
T Consensus         4 E~~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lP   82 (85)
T 3q9p_A            4 HTADRWRVSLDVN-HFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAP   82 (85)
T ss_dssp             CCCCEEEEEEECT-TTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEE
T ss_pred             CcCCEEEEEEECC-CCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEE
Confidence            4556666666653 889999999999999999844211      122345556789999999999999988899999976


Q ss_pred             c
Q 035678           82 K   82 (231)
Q Consensus        82 k   82 (231)
                      |
T Consensus        83 K   83 (85)
T 3q9p_A           83 M   83 (85)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=96.71  E-value=0.006  Score=43.58  Aligned_cols=79  Identities=22%  Similarity=0.303  Sum_probs=59.6

Q ss_pred             cccccCceEEEEeecCccccccceEEEEec-cceeeecccccc-----ccc----ceeeeeecccccCCCcc-ccccccc
Q 035678            5 FWEEDENTVLFKLPLASGTKQEGVKVAIED-HKLFISEEAGTS-----LNQ----YFGMYVNLPVGLNPDSF-ETSMDQT   73 (231)
Q Consensus         5 fweedentvlfklplasgtkqegvkvaied-hklfiseeagts-----lnq----yfgmyvnlpvglnpdsf-etsmdqt   73 (231)
                      -|.|+++.+.+.+-|. |-+.+.++|.+++ ..|.|+-+....     +.+    .|---+.||.+++++.. ..++ ..
T Consensus        28 di~e~~~~~~v~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~-~~  105 (123)
T 3aab_A           28 DMYEEGGYLVVVADLA-GFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKY-EN  105 (123)
T ss_dssp             EEEEETTEEEEEEECC-SCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEE-ET
T ss_pred             EEEEcCCEEEEEEECC-CCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEE-cC
Confidence            3556677777777664 7788999999999 999998653221     110    46667899999999999 8887 47


Q ss_pred             eeeEEEeeceee
Q 035678           74 GLLTVRFKKLMP   85 (231)
Q Consensus        74 glltvrfkklmp   85 (231)
                      |+|+|++.|.-+
T Consensus       106 GvL~I~lPK~~~  117 (123)
T 3aab_A          106 GVLTIRIPIAGT  117 (123)
T ss_dssp             TEEEEEEEGGGE
T ss_pred             CEEEEEEEcCCC
Confidence            999999987643

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=96.65  E-value=0.0061  Score=45.58  Aligned_cols=80  Identities=28%  Similarity=0.380  Sum_probs=59.0

Q ss_pred             ccccccCceEEEEeecCccccccceEEEEe-ccceeeecccccc--------c-----ccceeeeeecccccCCCccccc
Q 035678            4 VFWEEDENTVLFKLPLASGTKQEGVKVAIE-DHKLFISEEAGTS--------L-----NQYFGMYVNLPVGLNPDSFETS   69 (231)
Q Consensus         4 vfweedentvlfklplasgtkqegvkvaie-dhklfiseeagts--------l-----nqyfgmyvnlpvglnpdsfets   69 (231)
                      +-|.|+++.+.+.+-|. |-+.+.++|.++ +..|.|+-|....        +     ...|---+.||.+++++....+
T Consensus        46 ~di~e~~d~~~v~~dlP-Gv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~  124 (151)
T 1gme_A           46 MDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAG  124 (151)
T ss_dssp             EEEEECSSEEEEEEECT-TCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEE
T ss_pred             eEEEEcCCEEEEEEECC-CCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEEE
Confidence            34567777777777665 778899999995 6799998432211        1     0124445789999999999999


Q ss_pred             cccceeeEEEeeceee
Q 035678           70 MDQTGLLTVRFKKLMP   85 (231)
Q Consensus        70 mdqtglltvrfkklmp   85 (231)
                      + ..|+|+|++.|..+
T Consensus       125 ~-~nGvL~I~lPK~~~  139 (151)
T 1gme_A          125 L-ENGVLTVTVPKAEV  139 (151)
T ss_dssp             E-ETTEEEEEEECCCC
T ss_pred             E-ECCEEEEEEEccCc
Confidence            9 68999999988755

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=96.59  E-value=0.0039  Score=52.84  Aligned_cols=64  Identities=14%  Similarity=0.248  Sum_probs=52.0

Q ss_pred             cccceEEEEeeceeEEeeccccccccC----CceeeeeecCCCCCCCcccccCCCceEEEEeecCCCC
Q 035678          129 KKEDLVVGVVDRQFLIIGQQLNEKKEG----GSCESFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSK  192 (231)
Q Consensus       129 kkedlvvgvvdrqfliigqqlnekkeg----gscesfvlphgvnpdgfetsmddpgvltvtfkkkpsk  192 (231)
                      ++||+-|-|.|....|-|+.-.+..++    --.-+|.||.+|+++....++..-|||||++.|+...
T Consensus       124 ~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~nGVL~I~lPK~~~~  191 (314)
T 2bol_A          124 KAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPN  191 (314)
T ss_dssp             CTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSSSEEEEEEEBSSCC
T ss_pred             chHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCCCEEEEEEeccCcc
Confidence            578999999999888888875443332    2355789999999999999999889999999987643

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=96.30  E-value=0.015  Score=45.28  Aligned_cols=79  Identities=15%  Similarity=0.212  Sum_probs=59.9

Q ss_pred             cccccCceEEEEeecCccccccceEEEEeccceeeeccccc------ccccceeeeeecccccCCCccccccccceeeEE
Q 035678            5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGT------SLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTV   78 (231)
Q Consensus         5 fweedentvlfklplasgtkqegvkvaiedhklfiseeagt------slnqyfgmyvnlpvglnpdsfetsmdqtglltv   78 (231)
                      -+.|+++.+.+.+-|. |-+.|.++|.+++..|.|+-+...      ...+-|---+.||.+++++....++...|+|+|
T Consensus        67 dv~e~~d~~~v~~dlP-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I  145 (175)
T 2klr_A           67 EMRLEKDRFSVNLDVK-HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTV  145 (175)
T ss_dssp             --CCCCSEEEEEECCS-SCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEE
T ss_pred             EEEEcCCeEEEEEECC-CCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEE
Confidence            3556677777777664 888899999999999999754321      111236667899999999999999988999999


Q ss_pred             Eeecee
Q 035678           79 RFKKLM   84 (231)
Q Consensus        79 rfkklm   84 (231)
                      ++.|.-
T Consensus       146 ~lPK~~  151 (175)
T 2klr_A          146 NGPRKQ  151 (175)
T ss_dssp             EEECC-
T ss_pred             EEECCC
Confidence            998853

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=90.86  E-value=0.83  Score=31.47  Aligned_cols=77  Identities=16%  Similarity=0.245  Sum_probs=56.5

Q ss_pred             ccccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeece
Q 035678            4 VFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKL   83 (231)
Q Consensus         4 vfweedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkkl   83 (231)
                      +-|.+..+.|...+++. |.+.+.++|-|++..|-++=... . ++-|-.-++|+--++|+.-.-.+.. |-|.+.++|.
T Consensus        12 ~~W~Qt~~~V~v~i~l~-~v~~~~v~v~~~~~~l~v~~~~~-~-~~~y~~~~~L~~~I~~e~s~~~~~~-~~l~i~L~K~   87 (114)
T 1rl1_A           12 YDWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLP-S-GEDYNLKLELLHPIIPEQSTFKVLS-TKIEIKLKKP   87 (114)
T ss_dssp             EEEEECSSEEEEEECCC-SCCGGGEEEECSSSCEEEEEECT-T-SSEEEEEECBSSCCCGGGEEEEECS-SSEEEEEECS
T ss_pred             ccEEeCCCEEEEEEEeC-CCCHHHCEEEEEcCEEEEEEEeC-C-CcEEEEEeeCCCcCCccccEEEEEC-CEEEEEEEcC
Confidence            34999999999999887 88889999999999998874321 1 2334455689999999755444443 6688888875


Q ss_pred             e
Q 035678           84 M   84 (231)
Q Consensus        84 m   84 (231)
                      -
T Consensus        88 ~   88 (114)
T 1rl1_A           88 E   88 (114)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=88.69  E-value=1.8  Score=28.25  Aligned_cols=77  Identities=12%  Similarity=0.098  Sum_probs=56.2

Q ss_pred             ccccccCceEEEEeecCccccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEeece
Q 035678            4 VFWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFKKL   83 (231)
Q Consensus         4 vfweedentvlfklplasgtkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfkkl   83 (231)
                      +-|.+..+.|...+++. |.+.+.++|-+++..|-++=..+  -++-|-+-++|+--++|+.-.-.+.. |-+.+.++|.
T Consensus         5 ~~W~Qt~~~V~v~i~~~-~v~~~~v~v~~~~~~l~v~~~~~--~~~~y~~~~~L~~~I~~~~s~~~~~~-~~l~i~L~K~   80 (92)
T 2xcm_C            5 HEYYQKPEEVVVTVFAK-GIPKQNVNIDFGEQILSVVIEVP--GEDAYYLQPRLFGKIIPDKCKYEVLS-TKIEICLAKA   80 (92)
T ss_dssp             EEEEEETTEEEEEEECC-SCCGGGEEEEECSSBEEEEECCT--TSCCEEECCBBSSCBCGGGCEEEECS-SCEEEEEEBS
T ss_pred             ccEEeCCCEEEEEEEEC-CCChHHeEEEEECCEEEEEEEcC--CCcEEEEeeEcCCccCchhEEEEEEC-CEEEEEEEcC
Confidence            56889999999988864 77788999999999998874321  12334455689999999854444443 5678888875


Q ss_pred             e
Q 035678           84 M   84 (231)
Q Consensus        84 m   84 (231)
                      -
T Consensus        81 ~   81 (92)
T 2xcm_C           81 D   81 (92)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=85.23  E-value=4.8  Score=28.65  Aligned_cols=79  Identities=18%  Similarity=0.269  Sum_probs=54.4

Q ss_pred             cccccccCceEEEEeecCccc-cccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEee
Q 035678            3 SVFWEEDENTVLFKLPLASGT-KQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFK   81 (231)
Q Consensus         3 svfweedentvlfklplasgt-kqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfk   81 (231)
                      .+.|....+.|...+|+..|+ +.+-|+|.|+...|-++=..+.. ..|+ +-..|.--++|+.-.-.+...-.|.+..+
T Consensus        21 ~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~~-~~~~-~~~~L~~~I~~e~S~w~i~~~k~v~i~L~   98 (124)
T 1wgv_A           21 NYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENG-ERVL-MEGKLTHKINTESSLWSLEPGKCVLVNLS   98 (124)
T ss_dssp             SCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSS-EEEE-EEEEBSSCBCTTTCEEEECTTSEEEEEEC
T ss_pred             cEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccCC-CceE-EcccccCcCCCcCCEEEEeCCCEEEEEEE
Confidence            467999999999999999998 88999999999999887432111 1122 44567777888743333333334566665


Q ss_pred             ce
Q 035678           82 KL   83 (231)
Q Consensus        82 kl   83 (231)
                      |.
T Consensus        99 K~  100 (124)
T 1wgv_A           99 KV  100 (124)
T ss_dssp             BS
T ss_pred             EC
Confidence            53

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=82.00  E-value=5.2  Score=28.63  Aligned_cols=77  Identities=16%  Similarity=0.170  Sum_probs=53.7

Q ss_pred             cccccccCceEEEEeecCcc--ccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEe
Q 035678            3 SVFWEEDENTVLFKLPLASG--TKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRF   80 (231)
Q Consensus         3 svfweedentvlfklplasg--tkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrf   80 (231)
                      .+.|....+.|...+|+..|  ++..-|+|.|....|-++=.     +++.-.-.+|.--++|+.---.+.....+.+..
T Consensus         9 ~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~k-----g~~~~~~~~L~~~I~~e~s~w~i~~~k~v~i~L   83 (131)
T 1wfi_A            9 NYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLK-----GQPPVVDGELYNEVKVEESSWLIEDGKVVTVHL   83 (131)
T ss_dssp             SSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEET-----TSCCSBCSCBSSCBCSTTCEEEEETTTEEEEEE
T ss_pred             cEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEEC-----CceEEEecccccccccccCEEEEcCCCEEEEEE
Confidence            46799999999999999999  99999999999999988732     222113345666777863222232223567777


Q ss_pred             ecee
Q 035678           81 KKLM   84 (231)
Q Consensus        81 kklm   84 (231)
                      +|.-
T Consensus        84 ~K~~   87 (131)
T 1wfi_A           84 EKIN   87 (131)
T ss_dssp             EBSS
T ss_pred             EECC
Confidence            7754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	231
d1shsa_	115	b.15.1.1 (A:) Small heat shock protein {Archaeon M	2e-04
d1gmea_	150	b.15.1.1 (A:) Small heat shock protein {Wheat (Tri	0.001

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 16/86 (18%)

Query: 129 KKEDLVVGVVDRQFLIIGQQLNEKKE-------------GGSCESFVLPHGVNPDGFETS 175
            KED+++  V     I  ++                        +  LP  V  +     
Sbjct: 32  NKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAK 91

Query: 176 MDDPGVLTVTFKKKPSKDGKKKKEKI 201
            ++ GVL+V   K  S    KK   I
Sbjct: 92  FEN-GVLSVILPKAESS--IKKGINI 114

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 160 SFVLPHGVNPDGFETSMDDPGVLTVTFKKKPSKDGKKKKEKI 201
            F L      +  +  +++ GVLTVT  K   K  + K  +I
Sbjct: 108 RFRLLEDAKVEEVKAGLEN-GVLTVTVPKAEVKKPEVKAIQI 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	97.54
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	97.14
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	96.69
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	95.93
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	90.29

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=97.54  E-value=2.6e-05  Score=56.05  Aligned_cols=85  Identities=29%  Similarity=0.444  Sum_probs=56.7

Q ss_pred             CCCcCCCCCccccCceeecccCCCccccccceEEEEeeceeEEeec-cccccc------------cCCceeeeeecCCCC
Q 035678          102 APMGWLEPDDKEANGVIHSKAGLSAETKKEDLVVGVVDRQFLIIGQ-QLNEKK------------EGGSCESFVLPHGVN  168 (231)
Q Consensus       102 apmgwlepddkeangvihskaglsaetkkedlvvgvvdrqfliigq-qlnekk------------eggscesfvlphgvn  168 (231)
                      .++-|.|-+|.-  =|--.-.|+    .++|+-|-|-|.+.|+|.- .-.+..            .|.-+.+|.||..|+
T Consensus        43 p~~dv~e~~~~~--~i~~~lPG~----~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd  116 (150)
T d1gmea_          43 ARMDWKETPEAH--VFKADLPGV----KKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAK  116 (150)
T ss_dssp             GCEEEEECSSEE--EEEEECTTC----CGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCC
T ss_pred             CceeEEECCCEE--EEEEEeCCC----ccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCee
Confidence            356666655531  111233455    4679999998887776653 322222            123345899999999


Q ss_pred             CCCcccccCCCceEEEEeecCCCCc
Q 035678          169 PDGFETSMDDPGVLTVTFKKKPSKD  193 (231)
Q Consensus       169 pdgfetsmddpgvltvtfkkkpskd  193 (231)
                      ++....++.| |||+||+.|+..+.
T Consensus       117 ~~~i~A~~~n-GvL~I~lpK~~~~~  140 (150)
T d1gmea_         117 VEEVKAGLEN-GVLTVTVPKAEVKK  140 (150)
T ss_dssp             GGGCEEEEET-TEEEEEEECCCCCT
T ss_pred             eceeEEEEEC-CEEEEEEEcCCcCC
Confidence            9999999976 99999998875543

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.14  E-value=0.00023  Score=48.27  Aligned_cols=84  Identities=25%  Similarity=0.387  Sum_probs=57.2

Q ss_pred             cCCCcCCCCCccccCceeecccCCCccccccceEEEEeeceeEEeecccccc-------------ccCCceeeeeecCCC
Q 035678          101 MAPMGWLEPDDKEANGVIHSKAGLSAETKKEDLVVGVVDRQFLIIGQQLNEK-------------KEGGSCESFVLPHGV  167 (231)
Q Consensus       101 mapmgwlepddkeangvihskaglsaetkkedlvvgvvdrqfliigqqlnek-------------keggscesfvlphgv  167 (231)
                      ..|+-.+|-+|. . -+.-.-+|+    +++|+-|-|-+....|-|+.-.+.             ..|.-+-+|-||+.+
T Consensus        10 ~~pvdi~e~~~~-~-~i~~~lPG~----~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~v   83 (115)
T d1shsa_          10 FMPISIIEGDQH-I-KVIAWLPGV----NKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATV   83 (115)
T ss_dssp             CCCEEEEECSSE-E-EEEEECTTC----CGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCB
T ss_pred             cCceEEEEcCCE-E-EEEEECCCC----CHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCce
Confidence            446666653321 1 122223555    678999999888888887642221             123445679999999


Q ss_pred             CCCCcccccCCCceEEEEeecCCC
Q 035678          168 NPDGFETSMDDPGVLTVTFKKKPS  191 (231)
Q Consensus       168 npdgfetsmddpgvltvtfkkkps  191 (231)
                      +++.....++| |+|+|++.|++.
T Consensus        84 d~~~i~A~~~n-GvL~I~lpK~~~  106 (115)
T d1shsa_          84 KEENASAKFEN-GVLSVILPKAES  106 (115)
T ss_dssp             CGGGCEEEEET-TEEEEEEEBCGG
T ss_pred             eecceEEEEEC-CEEEEEEEeCCC
Confidence            99999999976 999999998753

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.69  E-value=0.0038  Score=42.00  Aligned_cols=78  Identities=15%  Similarity=0.193  Sum_probs=58.8

Q ss_pred             cccccCceEEEEeecCccccccceEEEEeccceeeeccccccc-----------c---cceeeeeecccccCCCcccccc
Q 035678            5 FWEEDENTVLFKLPLASGTKQEGVKVAIEDHKLFISEEAGTSL-----------N---QYFGMYVNLPVGLNPDSFETSM   70 (231)
Q Consensus         5 fweedentvlfklplasgtkqegvkvaiedhklfiseeagtsl-----------n---qyfgmyvnlpvglnpdsfetsm   70 (231)
                      -.-|+++.+.+.+-|+ |-+.+.+.|.++++.|.|+-+....-           .   ..|---+.||..++++.....+
T Consensus        14 di~e~~~~~~i~~~lP-G~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~A~~   92 (115)
T d1shsa_          14 SIIEGDQHIKVIAWLP-GVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF   92 (115)
T ss_dssp             EEEECSSEEEEEEECT-TCCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE
T ss_pred             EEEEcCCEEEEEEECC-CCCHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeecceEEEE
Confidence            3456778777777775 88999999999999999985432211           1   1233347899999999999888


Q ss_pred             ccceeeEEEeecee
Q 035678           71 DQTGLLTVRFKKLM   84 (231)
Q Consensus        71 dqtglltvrfkklm   84 (231)
                      + .|+|+|++.|.-
T Consensus        93 ~-nGvL~I~lpK~~  105 (115)
T d1shsa_          93 E-NGVLSVILPKAE  105 (115)
T ss_dssp             E-TTEEEEEEEBCG
T ss_pred             E-CCEEEEEEEeCC
Confidence            4 799999998864

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=95.93  E-value=0.016  Score=40.88  Aligned_cols=80  Identities=29%  Similarity=0.395  Sum_probs=57.0

Q ss_pred             ccccccCceEEEEeecCccccccceEEEEeccc-eeeeccccc--------cc--cc---ceeeeeecccccCCCccccc
Q 035678            4 VFWEEDENTVLFKLPLASGTKQEGVKVAIEDHK-LFISEEAGT--------SL--NQ---YFGMYVNLPVGLNPDSFETS   69 (231)
Q Consensus         4 vfweedentvlfklplasgtkqegvkvaiedhk-lfiseeagt--------sl--nq---yfgmyvnlpvglnpdsfets   69 (231)
                      +-|.|+++...+.+-|+ |-..+-++|.++|.. |.|+-+.-.        .+  ..   .|---+.||..++++....+
T Consensus        45 ~dv~e~~~~~~i~~~lP-G~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~  123 (150)
T d1gmea_          45 MDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAG  123 (150)
T ss_dssp             EEEEECSSEEEEEEECT-TCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEE
T ss_pred             eeEEECCCEEEEEEEeC-CCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeeceeEEE
Confidence            34778888888777776 666778999999865 556532110        00  01   24445889999999999999


Q ss_pred             cccceeeEEEeeceee
Q 035678           70 MDQTGLLTVRFKKLMP   85 (231)
Q Consensus        70 mdqtglltvrfkklmp   85 (231)
                      + ..|+|+|++.|.-+
T Consensus       124 ~-~nGvL~I~lpK~~~  138 (150)
T d1gmea_         124 L-ENGVLTVTVPKAEV  138 (150)
T ss_dssp             E-ETTEEEEEEECCCC
T ss_pred             E-ECCEEEEEEEcCCc
Confidence            9 57999999988643

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.29  E-value=0.76  Score=30.83  Aligned_cols=79  Identities=18%  Similarity=0.215  Sum_probs=55.1

Q ss_pred             cccccccCceEEEEeecCcc-ccccceEEEEeccceeeecccccccccceeeeeecccccCCCccccccccceeeEEEee
Q 035678            3 SVFWEEDENTVLFKLPLASG-TKQEGVKVAIEDHKLFISEEAGTSLNQYFGMYVNLPVGLNPDSFETSMDQTGLLTVRFK   81 (231)
Q Consensus         3 svfweedentvlfklplasg-tkqegvkvaiedhklfiseeagtslnqyfgmyvnlpvglnpdsfetsmdqtglltvrfk   81 (231)
                      +..|...++.|...+|+..| ++..-|.|.|..-.+.++=- +...+ .+=+...|.--++||.-.-.++...++.+..|
T Consensus        21 ~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~~~l~v~v~-~~~~~-~~~l~g~L~~~I~~deS~w~i~~~~~~i~~lk   98 (124)
T d1wgva_          21 NYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAML-EENGE-RVLMEGKLTHKINTESSLWSLEPGKCVLVNLS   98 (124)
T ss_dssp             SCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEE-CSSSE-EEEEEEEBSSCBCTTTCEEEECTTSEEEEEEC
T ss_pred             CeEEEeECCEEEEEEEeCCCCcchhhEEEEEEeCEEEEEEe-ccCCc-ceEEeCcccCcccccccEEEEeCCCEEEEEEE
Confidence            45799999999999999988 67789999999887776521 11112 22335678888899766556655556666666


Q ss_pred             ce
Q 035678           82 KL   83 (231)
Q Consensus        82 kl   83 (231)
                      |-
T Consensus        99 K~  100 (124)
T d1wgva_          99 KV  100 (124)
T ss_dssp             BS
T ss_pred             ec
Confidence            63