Citrus Sinensis ID: 035720

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDESDVESA
Secondary Structure (PSIPRED)
cccccccccccccEEccccHHHHHHHHHHHHHHHHHccEEEEEEEEccccHHHHHHHHHHccccEEEEEcccccccHHHHHHHcccccEEEEEEcccHHHHHHHHHHcccccccccccccccEEEEccccccccccccHHHHHHHcccEEEcccEEEEEccEEEEcccccccHHHHHHHHHcccccEEEEEEEEEEEEccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHcccccccccccccccEEEEcccccccccccccHHHHHcccccEEcccEEEEEccEEEEEccccccHHHHHHHHHHcccccEEEEEEEEEEcccccccEEccccHHHHHcc
Coil and Loop (DISEMBL)
mpkskrdrpvtlsktkkkgkEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQikpsrllwvgrypmrysqAYKVSkflcgntglfltnmpkEEVESLFNkyedydfartgstatekvelpegpleqfthemepflrkqgmpvrlnKGVVELVSDFvvceegkplspESARILRLLGIKMATFKLHLICRWSAEDFELYRegldesdvesa
Flexible Loop (DISEMBL)
mpkskrdrpvtlsktkkkgkehkevIVNSIRNAVENYKSIYVFSFENMRNLKFKEfreqikpsrllwvgryPMRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVceegkplspeSARILRLLGIKMATFKLHLICRWSAEDFELYregldesdvesa
Low Complexity Region (SEG)
MPKSKRDRPVTLSktkkkgkehkEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDESDVESA
Disordered region (IsUnstruct)
************************VIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFAR*************************FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYR***********
Disordered Region (DISOPRED)
***SKRDR************EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDE******
Disordered Region (DISEMBL)
**********************KEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYRE**********
Disordered Region (DISPRO)
******DRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDES*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDESDVESA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
A4FV84	239	mRNA turnover protein 4 h	yes	no	0.953	0.866	0.464	3e-47
Q9D0I8	239	mRNA turnover protein 4 h	yes	no	0.907	0.824	0.481	2e-46
Q9UKD2	239	mRNA turnover protein 4 h	yes	no	0.953	0.866	0.450	1e-45
Q86HD3	223	mRNA turnover protein 4 h	yes	no	0.953	0.928	0.344	2e-33
Q7S302	252	mRNA turnover protein 4 h	N/A	no	0.940	0.809	0.343	1e-32
Q9USZ6	241	mRNA turnover protein 4 h	yes	no	0.912	0.821	0.334	2e-30
Q6FJ04	239	mRNA turnover protein 4 h	yes	no	0.921	0.836	0.330	9e-26
Q75DK9	236	mRNA turnover protein 4 h	yes	no	0.903	0.830	0.315	1e-23
P33201	236	mRNA turnover protein 4 O	yes	no	0.889	0.817	0.294	1e-21
P05317	312	60S acidic ribosomal prot	no	no	0.737	0.512	0.262	8e-09

>sp|A4FV84|MRT4_BOVIN mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4 PE=2 SV=1

 Score =  187 bits (476), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/224 (46%), Positives = 136/224 (60%), Gaps = 17/224 (7%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKSKRD+ V+L+KT KKG E K+ ++  +R  V+ YK +++FS  NMRN K K+ R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KPSRLLW---------VGRYPMRYSQAYK-----VSKFLCGNTGLFLTNMPKEEVESLFN 106
           K SR+ +         +GR P   S  YK     VSK L G  GL  TN  KEEV+  F 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSP---SDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFT 117

Query: 107 KYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCE 166
           KY + D+AR G+ AT  V L  GPLEQF H MEP LR+ G+P  L KGVV L+SD+ VC+
Sbjct: 118 KYTEMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCK 177

Query: 167 EGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLD 210
           EG  L+PE AR+L+L G +MA FK+ +   W A+     + G D
Sbjct: 178 EGDVLTPEQARVLKLFGYEMAEFKVSIKYMWDAQSGRFQQMGDD 221

Involved in mRNA turnover and ribosome assembly.
Bos taurus (taxid: 9913)

>sp|Q9D0I8|MRT4_MOUSE mRNA turnover protein 4 homolog OS=Mus musculus GN=Mrto4 PE=2 SV=1

 Score =  185 bits (470), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/214 (48%), Positives = 132/214 (61%), Gaps = 17/214 (7%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKSKRD+ V+L+KT KKG E K+ ++  +R  V+ YK +++FS  NMRN K K+ R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KPSRLLW---------VGRYPMRYSQAYK-----VSKFLCGNTGLFLTNMPKEEVESLFN 106
           K SR+ +         +GR P   S  YK     VSK L G  GL  TN  KEEV   F 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSP---SDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFT 117

Query: 107 KYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCE 166
           KY + DFAR G+ AT  V L  GPL+QF H MEP LR+ G+P  L KGVV L+SD+ VC+
Sbjct: 118 KYTEMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCK 177

Query: 167 EGKPLSPESARILRLLGIKMATFKLHLICRWSAE 200
           EG  L+PE ARIL+L G +MA FK+ +   W A+
Sbjct: 178 EGDVLTPEQARILKLFGYEMAEFKVIIKYMWDAQ 211

Involved in mRNA turnover and ribosome assembly.

Mus musculus (taxid: 10090)

>sp|Q9UKD2|MRT4_HUMAN mRNA turnover protein 4 homolog OS=Homo sapiens GN=MRTO4 PE=1 SV=2

 Score =  182 bits (463), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 134/224 (59%), Gaps = 17/224 (7%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKSKRD+ V+L+KT KKG E K+ ++  +R  V+ YK +++FS  NMRN K K+ R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KPSRLLW---------VGRYPMRYSQAYK-----VSKFLCGNTGLFLTNMPKEEVESLFN 106
           K SR+ +         +GR P   S  YK     VSK L G  GL  TN  KEEV   F 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSP---SDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFT 117

Query: 107 KYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCE 166
           KY + D+AR G+ A   V L  GPLEQF H MEP LR+ G+P  L +GVV L+SD+ VC+
Sbjct: 118 KYTEMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCK 177

Query: 167 EGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLD 210
           EG  L+PE AR+L+L G +MA FK+ +   W ++     + G D
Sbjct: 178 EGDVLTPEQARVLKLFGYEMAEFKVTIKYMWDSQSGRFQQMGDD 221

Involved in mRNA turnover and ribosome assembly.

Homo sapiens (taxid: 9606)

>sp|Q86HD3|MRT4_DICDI mRNA turnover protein 4 homolog OS=Dictyostelium discoideum GN=mrt4 PE=3 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 123/218 (56%), Gaps = 11/218 (5%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           M KSKR+  V ++K  K   E K+ +V++I++ V+ YK IY+F+FENMRN K K  R + 
Sbjct: 1   MVKSKRNVVVNMTKVTKNPGEKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEW 60

Query: 61  KPSRLLWVGRYPMRYS-----------QAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
             S+ L+     +                +K+++ L G  GLF TN PK++V   F  Y 
Sbjct: 61  STSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYS 120

Query: 110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
           + DF R+G  + E + + EGP+   TH ME +LR  G+P  L  GV+ +  ++ +CE G 
Sbjct: 121 EKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGV 180

Query: 170 PLSPESARILRLLGIKMATFKLHLICRWSAEDFELYRE 207
            ++PE +++L+L   +++ FK H+   W+ ++F L  E
Sbjct: 181 AVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFTLCEE 218

Involved in mRNA turnover and ribosome assembly.

Dictyostelium discoideum (taxid: 44689)

>sp|Q7S302|MRT4_NEUCR mRNA turnover protein 4 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU07547 PE=3 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 121/233 (51%), Gaps = 29/233 (12%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKSKR +   L++  KK +E KE +  +IR  + NY+  +VFS +NMRN   K+ R+++
Sbjct: 1   MPKSKRAKVYNLTQVTKKNREQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKEL 60

Query: 61  KPSRLLW---------VGRYP--MRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
              R+ +         +G  P   +     K+SK+L G+ GL  TN    E++  F    
Sbjct: 61  NDCRIFFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLT 120

Query: 110 DYDFARTGSTATEKVELPEGPLEQ------------FTHEMEPFLRKQGMPVRLNKGVVE 157
             DFAR GS AT  + +P GPL               +H +EP LR+ GMP R+ KG V 
Sbjct: 121 QVDFARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKVC 180

Query: 158 L------VSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFEL 204
           L        D+V+C+EG+ L     R+L+L  I ++ F++ L+  WSA   E+
Sbjct: 181 LGDEAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEV 233

Involved in mRNA turnover and ribosome assembly.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q9USZ6|MRT4_SCHPO mRNA turnover protein 4 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.03 PE=3 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 23/221 (10%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKS+R + +TL++T+KKG E K  + + ++ +++++  +++F   NMRN   K  R+  
Sbjct: 1   MPKSRRSKVLTLAQTEKKGHEGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDW 60

Query: 61  KPSRLLW---------VGRYPM--RYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
           K SR+           +G  P         K++K L G  GL  TN   +EV   F  + 
Sbjct: 61  KGSRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFV 120

Query: 110 DYDFARTGSTATEKVELPEGPLEQ------------FTHEMEPFLRKQGMPVRLNKGVVE 157
             DFAR G+ A     +P GP+               TH +EP +R+ GMP  L  GVV 
Sbjct: 121 QNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVT 180

Query: 158 LVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWS 198
           L++DF +C EG+ L     R+L+L GI  A FK+ L+  +S
Sbjct: 181 LLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLLGYYS 221

Involved in mRNA turnover and ribosome assembly.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6FJ04|MRT4_CANGA mRNA turnover protein 4 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=MRT4 PE=3 SV=1

 Score =  116 bits (291), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 24/224 (10%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MP+SKR + VTL++T KKG+E+KE I + +R A++ YK ++V   +++R    +E RE  
Sbjct: 1   MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDTYKYVFVLQLDDVRTPVLQEIREAW 60

Query: 61  KPSRLLWVGRYPMRYS------QAY-----KVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
             S+LL   R  +  +      Q Y     K++K+  G  GL  TN   + V+  F  Y 
Sbjct: 61  VGSKLLMGKRKVLEKALGTTREQEYKENLSKLTKYCSGVIGLLFTNETLDTVKEYFEAYS 120

Query: 110 DYDFARTGSTATEKVELPEG---------PLEQ---FTHEMEPFLR-KQGMPVRLNKGVV 156
             D++R  S A    E+PEG         P+E+     H +EP LR K  MP ++  G +
Sbjct: 121 RLDYSRPNSRAPITFEVPEGIVYSRGGQIPIEEDVPMAHSLEPTLRNKYEMPTKIKAGKI 180

Query: 157 ELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAE 200
            L + ++VC+EG+ L    A IL+  G+ +A FK+ +   +  E
Sbjct: 181 TLEAPYLVCKEGQKLDVRQALILKQFGVALAQFKVIISAYYDNE 224

Involved in mRNA turnover and ribosome assembly.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q75DK9|MRT4_ASHGO mRNA turnover protein 4 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRT4 PE=3 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 32/228 (14%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MP+SKR + VTL++T+KKG+E+KE I + +R A++ Y+ ++V   E++R    +E R   
Sbjct: 1   MPRSKRSKLVTLAQTEKKGRENKERIFDEVRQALDTYRYVWVLRLEDVRTPVLQEIRSAW 60

Query: 61  KPSRLLWVGR---------------YPMRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLF 105
             S+L+ +GR               Y    S   K  + +C   GL  T+   E V + F
Sbjct: 61  AGSKLI-MGRRKVLEKALGGTRETEYKENVSGLVKQCEGMC---GLLFTDETPETVTAYF 116

Query: 106 NKYEDYDFARTGSTATEKVELPEG---------PLEQ---FTHEMEPFLRKQ-GMPVRLN 152
            +Y   D++R  S A  +VE+P G         P E      H +EP LR +  MP R+ 
Sbjct: 117 REYRKADYSRAKSRAPLRVEIPAGVVYSRGGQVPAEDDVPMVHSLEPTLRNKFKMPTRIQ 176

Query: 153 KGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAE 200
            G + L   ++VCE G+ L    A IL+  G+  A F++ L   +  E
Sbjct: 177 NGKITLEQPYLVCEAGETLDVRQALILKQFGVAAAEFRVKLAAYYDGE 224

Involved in mRNA turnover and ribosome assembly.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|P33201|MRT4_YEAST mRNA turnover protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRT4 PE=1 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 24/217 (11%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MP+SKR + VTL++T KKG+E+KE I + +R A++ Y+ ++V   +++R    +E R   
Sbjct: 1   MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDTYRYVWVLHLDDVRTPVLQEIRTSW 60

Query: 61  KPSRLLWVGRYPMRYS-----------QAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
             S+L+   R  ++ +             Y++SK   G TGL  T+     V+  F  Y 
Sbjct: 61  AGSKLIMGKRKVLQKALGEKREEEYKENLYQLSKLCSGVTGLLFTDEDVNTVKEYFKSYV 120

Query: 110 DYDFARTGSTATEKVELPEG---------PLEQ---FTHEMEPFLRKQ-GMPVRLNKGVV 156
             D++R  + A     +PEG         P E+     H +EP +R +  +P ++  G +
Sbjct: 121 RSDYSRPNTKAPLTFTIPEGIVYSRGGQIPAEEDVPMIHSLEPTMRNKFEIPTKIKAGKI 180

Query: 157 ELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHL 193
            + S ++VC EG+ L    A IL+  GI  + FK+ +
Sbjct: 181 TIDSPYLVCTEGEKLDVRQALILKQFGIAASEFKVKV 217

Involved in mRNA turnover and ribosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P05317|RLA0_YEAST 60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPP0 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 19/179 (10%)

Query: 30  IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY-------- 79
           +R  +E YKS++V   +N+ + +  E R++++   ++ +G+  M  R  + +        
Sbjct: 15  LREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFE 74

Query: 80  KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
           K+  F+ GN G   TN P  E++++         AR G+ A E + +           ME
Sbjct: 75  KLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWV-----RAVNTGME 129

Query: 140 P----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
           P    F +  G+P ++ +G +E+VSD  V + G  +    A +L LL I   TF L ++
Sbjct: 130 PGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVV 188

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
224115598	229	predicted protein [Populus trichocarpa]	1.0	0.947	0.768	4e-95
224056765	229	predicted protein [Populus trichocarpa]	1.0	0.947	0.772	1e-94
225448095	229	PREDICTED: mRNA turnover protein 4 homol	1.0	0.947	0.755	2e-93
388491758	229	unknown [Lotus japonicus]	1.0	0.947	0.694	1e-86
346466455	262	hypothetical protein [Amblyomma maculatu	0.967	0.801	0.693	5e-83
18395622	235	Ribosomal protein L10 family protein [Ar	1.0	0.923	0.680	3e-82
76160923	229	unknown [Solanum tuberosum] gi|413968558	1.0	0.947	0.703	2e-80
357445637	228	mRNA turnover protein-like protein [Medi	0.990	0.942	0.662	2e-79
11067271	231	unknown protein [Arabidopsis thaliana]	0.981	0.922	0.668	4e-79
217073168	228	unknown [Medicago truncatula]	0.990	0.942	0.657	4e-79

>gi|224115598|ref|XP_002317075.1| predicted protein [Populus trichocarpa] gi|222860140|gb|EEE97687.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 176/229 (76%), Positives = 197/229 (86%), Gaps = 12/229 (5%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKSKR+RPVTLSKTKKKG+EHKE IVNSIR+AVE Y SIYVFSFENMRNLKFKEFREQ 
Sbjct: 1   MPKSKRNRPVTLSKTKKKGREHKESIVNSIRDAVEKYNSIYVFSFENMRNLKFKEFREQH 60

Query: 61  KPSRLLWVG-----RYPMRYSQA-------YKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
           K +   ++G     +  +  S A       +KVSK LCG++GLFLTN+ +EEVE LFN+Y
Sbjct: 61  KLTSRFFLGSNKVMQVSLGRSAADEIRPGLHKVSKLLCGDSGLFLTNLSREEVERLFNEY 120

Query: 109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
           E+YDFARTG+TATE VEL EGPLEQFTHEMEPFLRKQGMPVRLNKGV++LVS+FVVCEEG
Sbjct: 121 EEYDFARTGTTATEMVELKEGPLEQFTHEMEPFLRKQGMPVRLNKGVIDLVSNFVVCEEG 180

Query: 169 KPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDESDVESA 217
           KPLSPES+RILRLLG KMATF+LHLICRWS EDFELYREGLDESDVESA
Sbjct: 181 KPLSPESSRILRLLGTKMATFRLHLICRWSPEDFELYREGLDESDVESA 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056765|ref|XP_002299012.1| predicted protein [Populus trichocarpa] gi|118486150|gb|ABK94918.1| unknown [Populus trichocarpa] gi|222846270|gb|EEE83817.1| predicted protein [Populus trichocarpa]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 177/229 (77%), Positives = 194/229 (84%), Gaps = 12/229 (5%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKSKR+RPVTLSKTKKKG+EHKE IVNSIR+AVE Y SIYVFSFENMRNLKFKEFREQ 
Sbjct: 1   MPKSKRNRPVTLSKTKKKGREHKESIVNSIRDAVEKYNSIYVFSFENMRNLKFKEFREQH 60

Query: 61  KPSRLLWVG-----RYPMRYSQA-------YKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
           K +   ++G     +  +  S A       +KVSK LCG+ GLFLTN+P+EEVE LFN+Y
Sbjct: 61  KLTSRFFLGSNKVMQVSLGRSAADEIRPGLHKVSKLLCGDAGLFLTNLPREEVERLFNEY 120

Query: 109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
           E+YDFARTG+TATE VEL EGPLEQFTHEMEPFLRKQGMPVRLNKGV+ELVSDFVV EEG
Sbjct: 121 EEYDFARTGTTATETVELKEGPLEQFTHEMEPFLRKQGMPVRLNKGVIELVSDFVVSEEG 180

Query: 169 KPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDESDVESA 217
           KPLSPE ARILRLLG K ATFKLHLICRWS EDFELYREGLD+SDVESA
Sbjct: 181 KPLSPECARILRLLGTKTATFKLHLICRWSPEDFELYREGLDDSDVESA 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448095|ref|XP_002276595.1| PREDICTED: mRNA turnover protein 4 homolog [Vitis vinifera] gi|298204604|emb|CBI23879.3| unnamed protein product [Vitis vinifera]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/229 (75%), Positives = 195/229 (85%), Gaps = 12/229 (5%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKSKRDRPVTLSKTKKKG+ HKE IVNSIR AVENY SIYVFSFENMRNLKFKEFRE++
Sbjct: 1   MPKSKRDRPVTLSKTKKKGRGHKESIVNSIRQAVENYSSIYVFSFENMRNLKFKEFREKL 60

Query: 61  KPSRLLWVG-----RYPMRYSQA-------YKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
           K +   ++G     +  +  S A        KVSK L G+TGLF TN+PKEEV+ LFN+Y
Sbjct: 61  KSTSRFFLGSNKVMQIAIGRSVADEIRPGLRKVSKLLHGDTGLFFTNLPKEEVQRLFNEY 120

Query: 109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
           E+YDFARTGSTA EKVEL EGPL+QFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG
Sbjct: 121 EEYDFARTGSTAVEKVELKEGPLDQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 180

Query: 169 KPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDESDVESA 217
            PLSPESARILRLLGIKMATF+LHL+CRWS ++F+LY+EGLD+SDVES+
Sbjct: 181 TPLSPESARILRLLGIKMATFRLHLVCRWSPDEFDLYKEGLDDSDVESS 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491758|gb|AFK33945.1| unknown [Lotus japonicus]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 159/229 (69%), Positives = 187/229 (81%), Gaps = 12/229 (5%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKSKR++ VTLSKTKKKG+EHKEVIVN+IR+A E Y S+YVFSFENMRNLKFKEFR+++
Sbjct: 1   MPKSKRNKQVTLSKTKKKGREHKEVIVNAIRDAAEKYSSLYVFSFENMRNLKFKEFRDRL 60

Query: 61  KPSRLLWVGRYPMRY------------SQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
           K S   ++G   +               + YKVSK L G++G+F TN+ KEEVE LFN Y
Sbjct: 61  KSSSRFFLGSNKVMQVALGRSASDEIKPRLYKVSKLLRGDSGMFFTNLSKEEVERLFNGY 120

Query: 109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
           E+YDFARTG  ATEKV+L EGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSD VVCEEG
Sbjct: 121 EEYDFARTGGIATEKVDLQEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDLVVCEEG 180

Query: 169 KPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDESDVESA 217
           KPLSPE++RILRLLGIKMATF+LHL+CRW+ +DFELY +G  +SDVE +
Sbjct: 181 KPLSPEASRILRLLGIKMATFRLHLVCRWTPDDFELYIDGPGDSDVECS 229

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346466455|gb|AEO33072.1| hypothetical protein [Amblyomma maculatum]

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 154/222 (69%), Positives = 181/222 (81%), Gaps = 12/222 (5%)

Query: 8   RPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLW 67
           + VTLSKTKKKG++HKEVIV+SI+ A+E++ S YVF+FENMRN KFKEFREQ+K +   +
Sbjct: 41  KAVTLSKTKKKGRQHKEVIVSSIKQALEDHGSAYVFTFENMRNQKFKEFREQLKSNSRFF 100

Query: 68  VGRYP-MRYSQA-----------YKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFAR 115
           +G    M+ S             +K+SKFL G+ GL  TN+ KEEV+  F KYED+DFAR
Sbjct: 101 LGSNKVMQISLGRSVADETKPGIHKLSKFLRGDAGLLFTNLEKEEVQRTFEKYEDHDFAR 160

Query: 116 TGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPES 175
           TGS ATEKVEL EGPLEQFTHEMEPFLRKQGMPVRL KGVVELVSDFVVCEEGKPLSPES
Sbjct: 161 TGSNATEKVELKEGPLEQFTHEMEPFLRKQGMPVRLTKGVVELVSDFVVCEEGKPLSPES 220

Query: 176 ARILRLLGIKMATFKLHLICRWSAEDFELYREGLDESDVESA 217
           ARILRLLGIKMA F+LHL+CRW+ +DFE+YREGLD SD+ES+
Sbjct: 221 ARILRLLGIKMAPFRLHLVCRWTPDDFEVYREGLDLSDIESS 262

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18395622|ref|NP_564226.1| Ribosomal protein L10 family protein [Arabidopsis thaliana] gi|15028333|gb|AAK76643.1| unknown protein [Arabidopsis thaliana] gi|19310645|gb|AAL85053.1| unknown protein [Arabidopsis thaliana] gi|21593993|gb|AAM65913.1| unknown [Arabidopsis thaliana] gi|332192473|gb|AEE30594.1| Ribosomal protein L10 family protein [Arabidopsis thaliana]

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 160/235 (68%), Positives = 180/235 (76%), Gaps = 18/235 (7%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKSKRDRPVTLSKTKKKG+EHKE IVN IR AVE Y S+YVFSFENMRN+KFKEFR+Q 
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60

Query: 61  KPSRLLWVGRYPMRY------------SQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
           + +   ++G   +              S  YKVSK L G+TGL +T+MPKEEVESLFN Y
Sbjct: 61  RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120

Query: 109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
           ED DF+RTGS A E VEL EGPLEQFTHEMEP LRK  MPVRLNKG VELV+DFVVCEEG
Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEG 180

Query: 169 KPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDE------SDVESA 217
           K LSP+SA ILRLL +KMATFKL+L+CRWS  DFELYRE L E      SDVE++
Sbjct: 181 KQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDLSELYREDLSDVETS 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76160923|gb|ABA40425.1| unknown [Solanum tuberosum] gi|413968558|gb|AFW90616.1| putative ribosomal protein L1 [Solanum tuberosum]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/229 (70%), Positives = 191/229 (83%), Gaps = 12/229 (5%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKSKR+R VTLSKTKKKGKEHKE IVNSIR   E Y S YVFSFENMRNLKFKEFR+Q+
Sbjct: 1   MPKSKRNRAVTLSKTKKKGKEHKENIVNSIRECAEKYSSAYVFSFENMRNLKFKEFRDQL 60

Query: 61  KPSRLLWVG-----RYPMRYSQA-------YKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
           K S   ++G     +  +  S +       +K+SK + G++GL  TN+ KEEV+ LFN+Y
Sbjct: 61  KSSSRFFLGSNKVMQVALGRSDSDEIRPGLHKISKLVRGDSGLCFTNLSKEEVQRLFNEY 120

Query: 109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
           E++DFARTG+TATEKVEL EGPL+QFTHEMEPFLRKQGMPVRLN+GVVELVSDFVVCEEG
Sbjct: 121 EEHDFARTGTTATEKVELQEGPLDQFTHEMEPFLRKQGMPVRLNRGVVELVSDFVVCEEG 180

Query: 169 KPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDESDVESA 217
           +PLSPE+ARILRLLG KMATF+LHLICRWS ++FE+YREGL+ESD+ES+
Sbjct: 181 RPLSPEAARILRLLGKKMATFRLHLICRWSPDEFEIYREGLEESDIESS 229

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445637|ref|XP_003593096.1| mRNA turnover protein-like protein [Medicago truncatula] gi|124360427|gb|ABN08437.1| Ribosomal protein L10 [Medicago truncatula] gi|355482144|gb|AES63347.1| mRNA turnover protein-like protein [Medicago truncatula] gi|388513309|gb|AFK44716.1| unknown [Medicago truncatula]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 151/228 (66%), Positives = 180/228 (78%), Gaps = 13/228 (5%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKSKR++ VTLSKT KKG+ HKE+I+N IR+A E Y SIYVF+F+NMRN K KEFREQ+
Sbjct: 1   MPKSKRNKQVTLSKTTKKGRGHKELIINGIRDAAEKYSSIYVFNFQNMRNSKLKEFREQL 60

Query: 61  KPSRLLWVGRYPM------RYS------QAYKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
           + S   ++G   +      R S        +KVSK L G+ G+  TN+ KEEVE LFN++
Sbjct: 61  QSSSKFFLGSNKVMQVAIGRSSSDEIKPNLHKVSKLLRGDAGMIFTNLSKEEVERLFNEF 120

Query: 109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
           E YDFARTGS ATEKVEL EGPLEQFTH+MEPFLRKQGMPVRLNKGVVELVSDFVVCEEG
Sbjct: 121 EGYDFARTGSIATEKVELKEGPLEQFTHDMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 180

Query: 169 KPLSPESARILRLLGIKMATFKLHLICRWSAE-DFELYREGLDESDVE 215
           KPLSPE++RILRL+G  MATF+L+L+CRW +E DFELY +G  +SDVE
Sbjct: 181 KPLSPEASRILRLMGNMMATFRLNLVCRWGSEDDFELYIDGPGDSDVE 228

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11067271|gb|AAG28799.1|AC079374_2 unknown protein [Arabidopsis thaliana]

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 157/235 (66%), Positives = 177/235 (75%), Gaps = 22/235 (9%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKSKRDRPVTLSKTKKKG+EHKE IVN IR AVE Y S+YVFSFENMRN+KFKEFR+Q 
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60

Query: 61  KPSRLLWVGRYPMRY------------SQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
           + +   ++G   +              S  YKVSK L G+TGL +T+MPKEEVESLFN Y
Sbjct: 61  RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120

Query: 109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
           ED DF+RTGS A E     EGPLEQFTHEMEP LRK  MPVRLNKG VELV+DFVVCEEG
Sbjct: 121 EDSDFSRTGSIAVE----TEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEG 176

Query: 169 KPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDE------SDVESA 217
           K LSP+SA ILRLL +KMATFKL+L+CRWS  DFELYRE L E      SDVE++
Sbjct: 177 KQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDLSELYREDLSDVETS 231

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073168|gb|ACJ84943.1| unknown [Medicago truncatula]

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 150/228 (65%), Positives = 180/228 (78%), Gaps = 13/228 (5%)

Query: 1   MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
           MPKSKR++ VTLSKT KKG+ HKE+I+N IR+A E Y SIYVF+F+NMRN K KEFREQ+
Sbjct: 1   MPKSKRNKQVTLSKTTKKGRGHKELIINGIRDAAEKYSSIYVFNFQNMRNSKLKEFREQL 60

Query: 61  KPSRLLWVGRYPM------RYS------QAYKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
           + S   ++G   +      R S        +KVSK L G+ G+  TN+ KEEVE LFN++
Sbjct: 61  QSSSKFFLGSNKVMQVAIGRSSSDEIKPNLHKVSKLLRGDAGMIFTNLSKEEVERLFNEF 120

Query: 109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
           E YDFARTGS ATEKVEL EGPLEQFTH+MEPFLR+QGMPVRLNKGVVELVSDFVVCEEG
Sbjct: 121 EGYDFARTGSIATEKVELKEGPLEQFTHDMEPFLRRQGMPVRLNKGVVELVSDFVVCEEG 180

Query: 169 KPLSPESARILRLLGIKMATFKLHLICRWSAE-DFELYREGLDESDVE 215
           KPLSPE++RILRL+G  MATF+L+L+CRW +E DFELY +G  +SDVE
Sbjct: 181 KPLSPEASRILRLMGNMMATFRLNLVCRWGSEDDFELYIDGPGDSDVE 228

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2032970	235	AT1G25260 "AT1G25260" [Arabido	1.0	0.923	0.642	8.9e-70
ZFIN|ZDB-GENE-050417-142	242	mrto4 "mRNA turnover 4 homolog	1.0	0.896	0.404	7.3e-43
UNIPROTKB|F1P353	249	MRTO4 "Uncharacterized protein	0.981	0.855	0.440	4e-42
UNIPROTKB|A4FV84	239	MRTO4 "mRNA turnover protein 4	0.995	0.903	0.432	6.6e-42
UNIPROTKB|E2RG17	240	MRTO4 "Uncharacterized protein	1.0	0.904	0.439	8.4e-42
UNIPROTKB|F1SUQ2	241	MRTO4 "Uncharacterized protein	0.995	0.896	0.436	1.7e-41
MGI|MGI:1917152	239	Mrto4 "MRT4, mRNA turnover 4,	0.995	0.903	0.436	1.7e-41
FB|FBgn0033485	256	RpLP0-like "Ribosomal protein	0.995	0.843	0.430	2e-40
UNIPROTKB|Q9UKD2	239	MRTO4 "mRNA turnover protein 4	0.995	0.903	0.419	2e-40
WB|WBGene00017347	220	F10E7.5 [Caenorhabditis elegan	0.926	0.913	0.380	5.7e-36

TAIR|locus:2032970 AT1G25260 "AT1G25260" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 151/235 (64%), Positives = 170/235 (72%)

Query:     1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
             MPKSKRDRPVTLS          E IVN IR AVE Y S+YVFSFENMRN+KFKEFR+Q 
Sbjct:     1 MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60

Query:    61 KPSRLLWVGRYPMRY------------SQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
             + +   ++G   +              S  YKVSK L G+TGL +T+MPKEEVESLFN Y
Sbjct:    61 RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120

Query:   109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
             ED DF+RTGS A E VEL EGPLEQFTHEMEP LRK  MPVRLNKG VELV+DFVVCEEG
Sbjct:   121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEG 180

Query:   169 KPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDE------SDVESA 217
             K LSP+SA ILRLL +KMATFKL+L+CRWS  DFELYRE L E      SDVE++
Sbjct:   181 KQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDLSELYREDLSDVETS 235

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

ZFIN|ZDB-GENE-050417-142 mrto4 "mRNA turnover 4 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/230 (40%), Positives = 138/230 (60%)

Query:     1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
             MPKSKRD+ ++L+          + ++  +R   + Y+ ++VFS ENMRN K K+ R   
Sbjct:     1 MPKSKRDKKISLTKTTKKGLEAKQNLIEELRKCADIYRYVFVFSVENMRNNKLKDIRTAW 60

Query:    61 KPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
             + SR  +         +G+ P   Y    +K+S+FL G  G+  TN  K+EV+  F  ++
Sbjct:    61 RHSRFFFGKNKVMMIALGKGPTDEYKDNLHKLSRFLRGEVGVLFTNKTKDEVQEYFGNFK 120

Query:   110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
             + D+AR G+TA+  V L EGPL+QF H MEP LR+ G+P  L KG V L+ DF VC+EG 
Sbjct:   121 EVDYARAGNTASMAVTLDEGPLDQFPHSMEPQLRQLGLPTALKKGAVTLIKDFEVCKEGD 180

Query:   170 PLSPESARILRLLGIKMATFKLHLICRWSAE--DFELYREGLDESDVESA 217
              L+PE ARIL+L G +MA FKL + C W++E  +FE   +G D+ + + A
Sbjct:   181 TLTPEQARILKLFGFEMAEFKLSIKCMWNSESGEFEKLTDGDDDDETKEA 230

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|F1P353 MRTO4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 100/227 (44%), Positives = 137/227 (60%)

Query:     1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
             MPKSKRDR V+L+          + ++  +R  V+ YK I++FS  NMRN K K+ R   
Sbjct:     8 MPKSKRDRKVSLTRTPRKGLEAKQALIAELRRCVDTYKHIFIFSVANMRNNKLKDVRNAW 67

Query:    61 KPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
             K SR+ +         +GR P   Y +  ++VSK L G  GL  TN  KEEV+  F+ ++
Sbjct:    68 KHSRIFFGKNKVMMVALGREPSSEYRENLHQVSKHLRGEVGLLFTNRTKEEVDEWFSSFK 127

Query:   110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
             + DFAR G+ AT  V L  GPLEQF H MEP LR+ G+P  L KGVV L+SD+ VC+EG 
Sbjct:   128 EVDFARAGNKATYTVSLDTGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 187

Query:   170 PLSPESARILRLLGIKMATFKLHLICRWSAE--DFE-LYREGLDESD 213
              L+PE AR+L+L G +MA FK+ +   W++E  DF+ L  +  DE D
Sbjct:   188 ILTPEQARVLKLFGYEMAEFKVTIKFLWNSETGDFQKLVGDEEDEED 234

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|A4FV84 MRTO4 "mRNA turnover protein 4 homolog" [Bos taurus (taxid:9913)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 99/229 (43%), Positives = 134/229 (58%)

Query:     1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
             MPKSKRD+ V+L+          + ++  +R  V+ YK +++FS  NMRN K K+ R   
Sbjct:     1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query:    61 KPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
             K SR+ +         +GR P   Y    ++VSK L G  GL  TN  KEEV+  F KY 
Sbjct:    61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYT 120

Query:   110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
             + D+AR G+ AT  V L  GPLEQF H MEP LR+ G+P  L KGVV L+SD+ VC+EG 
Sbjct:   121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query:   170 PLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVES 216
              L+PE AR+L+L G +MA FK+ +   W A+   F+   + L ES  ES
Sbjct:   181 VLTPEQARVLKLFGYEMAEFKVSIKYMWDAQSGRFQQMGDDLPESAPES 229

GO:0005730 "nucleolus" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|E2RG17 MRTO4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 101/230 (43%), Positives = 133/230 (57%)

Query:     1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
             MPKSKRD+ V+L+          + ++  +R  V+ YK +++FS  NMRN K K+ R   
Sbjct:     1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query:    61 KPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
             K SR+ +         +GR P   Y    ++VSK L G  GL  TN  KEEV   F KY 
Sbjct:    61 KHSRMFFGKNKVMMVALGRSPADEYKDNLHQVSKKLKGEVGLLFTNRTKEEVNEWFTKYT 120

Query:   110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
             + DFAR G+ AT  V L  GPLEQF H MEP LR+ G+P  L +GVV L+SD  VC+EG 
Sbjct:   121 EMDFARAGNKATFTVTLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDHEVCKEGD 180

Query:   170 PLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVESA 217
              L+PE AR+L+L G +MA FK+ +   W A+   F+   E L ES  ESA
Sbjct:   181 VLTPEQARVLKLFGYEMAEFKVTIRYMWDAQSGRFQQMGEDLPESASESA 230

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1SUQ2 MRTO4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 100/229 (43%), Positives = 133/229 (58%)

Query:     1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
             MPKSKRD+ V+L+          + ++  +R  V+ YK +++FS  NMRN K K+ R   
Sbjct:     1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKFLFIFSVANMRNSKLKDIRNAW 60

Query:    61 KPSRLLW---------VGRYPMR-Y-SQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
             K SR+ +         +GR P   Y    ++VSK L G  GL  TN  KEEV   F KY 
Sbjct:    61 KHSRMFFGKNKVMMVALGRSPCEEYRDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYG 120

Query:   110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
             + D+AR G+ AT  V L  GPLEQF H MEP LR+ G+P  L KGVV L+SD+ VC+EG 
Sbjct:   121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTTLKKGVVTLLSDYEVCKEGD 180

Query:   170 PLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVES 216
              L+PE ARIL+L G +MA FK+ +   W A+   F+   + L ES  ES
Sbjct:   181 VLTPEQARILKLFGYEMAEFKVTIRYMWDAQSGRFQEMGDDLPESAPES 229

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

MGI|MGI:1917152 Mrto4 "MRT4, mRNA turnover 4, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 100/229 (43%), Positives = 133/229 (58%)

Query:     1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
             MPKSKRD+ V+L+          + ++  +R  V+ YK +++FS  NMRN K K+ R   
Sbjct:     1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query:    61 KPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
             K SR+ +         +GR P   Y    ++VSK L G  GL  TN  KEEV   F KY 
Sbjct:    61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query:   110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
             + DFAR G+ AT  V L  GPL+QF H MEP LR+ G+P  L KGVV L+SD+ VC+EG 
Sbjct:   121 EMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query:   170 PLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVES 216
              L+PE ARIL+L G +MA FK+ +   W A+   F+   + L ES  ES
Sbjct:   181 VLTPEQARILKLFGYEMAEFKVIIKYMWDAQSGRFQQMDDDLPESAPES 229

GO:0003674 "molecular_function" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

FB|FBgn0033485 RpLP0-like "Ribosomal protein LP0-like" [Drosophila melanogaster (taxid:7227)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 99/230 (43%), Positives = 136/230 (59%)

Query:     1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
             MP+SKRD+ V+L+          + IV+ IR  V  Y +I+VF  +NMRN   K+ R+++
Sbjct:     1 MPRSKRDKKVSLTKTDRKGLAWKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQEL 60

Query:    61 KP-SRLLW---------VGRYPMRY--SQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
             K  SR ++         +GR        + +K+SK L G  GL  T+  KEEV      Y
Sbjct:    61 KKNSRFIFGKNRVMQIGLGRTKSEEVEPELHKLSKRLTGQVGLLFTDKSKEEVLEWAENY 120

Query:   109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
                ++AR+G  ATE V LP GPLE F H MEP LR  G+P +L KG+V L SD+ VCEEG
Sbjct:   121 WAVEYARSGFVATETVTLPAGPLEDFAHSMEPHLRSLGLPTKLEKGIVTLYSDYTVCEEG 180

Query:   169 KPLSPESARILRLLGIKMATFKLHLICRWS-AEDFELYREGLDESDVESA 217
             K L+PE ARIL+L+G  MA F+L + C W+ +E F+L+ E  D +D E A
Sbjct:   181 KVLTPEQARILKLVGKPMAKFRLTMKCSWTKSEGFQLHVED-DVNDEEQA 229

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006412 "translation" evidence=IC

GO:0003735 "structural constituent of ribosome" evidence=IC

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

UNIPROTKB|Q9UKD2 MRTO4 "mRNA turnover protein 4 homolog" [Homo sapiens (taxid:9606)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 96/229 (41%), Positives = 132/229 (57%)

Query:     1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
             MPKSKRD+ V+L+          + ++  +R  V+ YK +++FS  NMRN K K+ R   
Sbjct:     1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query:    61 KPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
             K SR+ +         +GR P   Y    ++VSK L G  GL  TN  KEEV   F KY 
Sbjct:    61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query:   110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
             + D+AR G+ A   V L  GPLEQF H MEP LR+ G+P  L +GVV L+SD+ VC+EG 
Sbjct:   121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180

Query:   170 PLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVES 216
              L+PE AR+L+L G +MA FK+ +   W ++   F+   + L ES  ES
Sbjct:   181 VLTPEQARVLKLFGYEMAEFKVTIKYMWDSQSGRFQQMGDDLPESASES 229

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

WB|WBGene00017347 F10E7.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 81/213 (38%), Positives = 126/213 (59%)

Query:     1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
             M +S+RD+ V+L+            +VN +R +V+ YK++++F+  NMR+ +F   R++ 
Sbjct:     1 MARSRRDKNVSLTKVKKKTKDTKNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKY 60

Query:    61 KPSRLLWVGRYPM-----------RYS-QAYKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
             K +   + G+  +            Y+ Q +K S  L G  GL  TNM K+EVE+ F++ 
Sbjct:    61 KENSRFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEA 120

Query:   109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
              + D+AR G  ATE V LPEGP+ QF   MEP LRK G+P +L+KGV+ L   F VC+EG
Sbjct:   121 SEEDYARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEG 180

Query:   169 KPLSPESARILRLLGIKMATFKLHLICRWSAED 201
             +PL+ E A+IL+   +KM+ F+L     W+ +D
Sbjct:   181 EPLTVEQAKILKHFEVKMSQFRLIFKAHWNKKD 213

GO:0005622 "intracellular" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9USZ6	MRT4_SCHPO	No assigned EC number	0.3348	0.9124	0.8215	yes	no
Q86HD3	MRT4_DICDI	No assigned EC number	0.3440	0.9539	0.9282	yes	no
Q9UKD2	MRT4_HUMAN	No assigned EC number	0.4508	0.9539	0.8661	yes	no
Q9D0I8	MRT4_MOUSE	No assigned EC number	0.4813	0.9078	0.8242	yes	no
Q75DK9	MRT4_ASHGO	No assigned EC number	0.3157	0.9032	0.8305	yes	no
Q6FJ04	MRT4_CANGA	No assigned EC number	0.3303	0.9216	0.8368	yes	no
A4FV84	MRT4_BOVIN	No assigned EC number	0.4642	0.9539	0.8661	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00111332	hypothetical protein (230 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)				•	•		•		0.710
	gw1.86.17.1	hypothetical protein (573 aa)				•	•		•		0.691
	gw1.I.4832.1	hypothetical protein (422 aa)				•	•				0.665
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•	•		•		0.663
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•	•				0.627
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•	•				0.613
	fgenesh4_pg.C_LG_X000306	hypothetical protein (187 aa)				•	•				0.599
	gw1.XIV.2332.1	annotation not avaliable (306 aa)				•	•		•		0.585
	grail3.0132003201	hypothetical protein (187 aa)				•	•				0.580
	grail3.0001095301	hypothetical protein (414 aa)				•	•				0.529

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
cd05796	163	cd05796, Ribosomal_P0_like, Ribosomal protein L10	2e-65
cd00379	155	cd00379, Ribosomal_L10_P0, Ribosomal protein L10 f	2e-17
cd05795	175	cd05795, Ribosomal_P0_L10e, Ribosomal protein L10	4e-16
PTZ00135	310	PTZ00135, PTZ00135, 60S acidic ribosomal protein P	2e-11
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	2e-10
pfam00466	100	pfam00466, Ribosomal_L10, Ribosomal protein L10	2e-09
PTZ00240	323	PTZ00240, PTZ00240, 60S ribosomal protein P0; Prov	7e-08

>gnl|CDD|240222 cd05796, Ribosomal_P0_like, Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

 Score =  199 bits (508), Expect = 2e-65
 Identities = 84/163 (51%), Positives = 106/163 (65%), Gaps = 11/163 (6%)

Query: 21  EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLW---------VGRY 71
           E K+ +V +IR AV+ YK IYVFS +NMRN K K+ R++ K SR  +         +GR 
Sbjct: 1   ELKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDSRFFFGKNKVMQVALGRT 60

Query: 72  PMRYSQ--AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEG 129
           P    +   +K+SK+L G  GL  TN P EEV   F+ Y + DFAR GS ATE V LPEG
Sbjct: 61  PEDEYKPNLHKLSKYLKGQVGLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPEG 120

Query: 130 PLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLS 172
           PLEQF H MEP LRK G+P +L KGV+ L +D+VVCEEGK L+
Sbjct: 121 PLEQFPHSMEPQLRKLGLPTKLKKGVITLEADYVVCEEGKVLT 163

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 163

>gnl|CDD|238222 cd00379, Ribosomal_L10_P0, Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

 Score = 75.3 bits (186), Expect = 2e-17
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 21  EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPS---------RLLWVGRY 71
           E KE +V  ++  ++ YKS+ V  +  +   +  E R++++ S          L+   R 
Sbjct: 1   EKKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLM---RR 57

Query: 72  PMRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE---DYDFARTGSTATEKVELPE 128
            ++ +   ++   L G T L  TN    EV  +   +       FA+ G  A + ++   
Sbjct: 58  ALKGTGFEELKPLLKGPTALAFTNEDPVEVAKVLKDFAKENKKLFAKGGVVAGKVLD--- 114

Query: 129 GPLEQFTHEMEPF-LRKQGMPVRLNKGVV-ELVSDFVVCEEG 168
            P         P       M + L K  + +L         G
Sbjct: 115 -PAGVTALAKLPSREELLAMLIGLLKAPIAKLARLLNALGIG 155

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 155

>gnl|CDD|240221 cd05795, Ribosomal_P0_L10e, Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

 Score = 72.6 bits (179), Expect = 4e-16
 Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 19/179 (10%)

Query: 21  EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVG-----RYPMR- 74
           E K+  V  +   +++Y  + +   +N+ + + ++ R  ++    + +G     R  +R 
Sbjct: 1   EWKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRN 60

Query: 75  ----YSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGP 130
                 +  K+  +L GN G   TN    E+  +  + +    A+ G+ A   V +P GP
Sbjct: 61  LGDENPELEKLLPYLKGNVGFIFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPAGP 120

Query: 131 LEQFTHEMEP----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIK 185
                  M P    F +  G+P ++ KG +E++SD VV ++G+ +    A +L  L IK
Sbjct: 121 TG-----MPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKGEKVGASEATLLNKLNIK 174

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 175

>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 19/184 (10%)

Query: 16  KKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM-- 73
           K + K  K+     +   +E YK I + S +N+ + + ++ R  ++    L +G+  +  
Sbjct: 3   KPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIR 62

Query: 74  -----RYSQAYKVSKFL---CGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVE 125
                R  +  ++ K L    GN G   T     EV+ +  + +    AR G  A   V 
Sbjct: 63  KALKQRLEELPELEKLLPHVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVV 122

Query: 126 LPEGPLEQFTHEMEP----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRL 181
           +P GP       M+P    F +  G+  ++ KG +E+ ++  + +EG+ +    A +L+ 
Sbjct: 123 IPAGPTG-----MDPSQTSFFQALGIATKIVKGQIEITNEVHLIKEGQKVGASQAVLLQK 177

Query: 182 LGIK 185
           L IK
Sbjct: 178 LNIK 181

Length = 310

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 26/182 (14%)

Query: 21  EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGR---------- 70
           E K+  V  ++  +++Y  + +   E +   + +E R +++    L V +          
Sbjct: 6   EWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEE 65

Query: 71  --YPMRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPE 128
                      K+  +L G   L  TNM   ++  L  K +    A+ G  A E + +P 
Sbjct: 66  AGEED----LEKLEDYLEGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVPA 121

Query: 129 GPLEQFTHEMEP-----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLG 183
           GP    T    P      L+K G+P R+ KG + +  D VV + G+ +SPE A +L+ LG
Sbjct: 122 GP----T-GFPPGPILSELQKLGIPARIQKGKIVIKKDTVVAKAGEVISPELANVLQKLG 176

Query: 184 IK 185
           IK
Sbjct: 177 IK 178

Length = 330

>gnl|CDD|215933 pfam00466, Ribosomal_L10, Ribosomal protein L10

 Score = 52.5 bits (127), Expect = 2e-09
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 18  KGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP--SRLLWVGRYPM-- 73
             +E KE IV  ++  ++ YKS+ V  +  +   +  E R++++   + L  VG+  +  
Sbjct: 1   MTREKKEEIVAELKELLKEYKSVVVVDYRGLTVAQLTELRKKLREAGAELK-VGKNTLMR 59

Query: 74  ----RYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
                  +   +S+ L G T L  TN     V  +  K+
Sbjct: 60  RALEGTGEEEALSELLKGPTALIFTNEDPVAVAKVLKKF 98

Length = 100

>gnl|CDD|140267 PTZ00240, PTZ00240, 60S ribosomal protein P0; Provisional

 Score = 51.5 bits (123), Expect = 7e-08
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 9/119 (7%)

Query: 83  KFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEP-- 140
             L GNTGL  TN   +E+ S+ + +     AR G+ A   V +P G     +  MEP  
Sbjct: 87  NLLSGNTGLIFTNNEVQEITSVLDSHRVKAPARVGAIAPCDVIVPAG-----STGMEPTQ 141

Query: 141 --FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRW 197
             F +   +  ++ KG+VE+V++  V   G  +   +A +L+ L I    +++ ++  W
Sbjct: 142 TSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVEVLSVW 200

Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
KOG0816	223	consensus Protein involved in mRNA turnover [RNA p	100.0
PTZ00135	310	60S acidic ribosomal protein P0; Provisional	100.0
PTZ00240	323	60S ribosomal protein P0; Provisional	100.0
cd05795	175	Ribosomal_P0_L10e Ribosomal protein L10 family, P0	100.0
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	100.0
cd05796	163	Ribosomal_P0_like Ribosomal protein L10 family, P0	100.0
KOG0815	245	consensus 60S acidic ribosomal protein P0 [Transla	100.0
COG0244	175	RplJ Ribosomal protein L10 [Translation, ribosomal	99.97
cd00379	155	Ribosomal_L10_P0 Ribosomal protein L10 family; com	99.88
PF00466	100	Ribosomal_L10: Ribosomal protein L10; InterPro: IP	99.87
PRK00099	172	rplJ 50S ribosomal protein L10; Reviewed	99.85
cd05797	157	Ribosomal_L10 Ribosomal protein L10 family, L10 su	99.84
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	97.33
KOG4241	245	consensus Mitochondrial ribosomal protein L10 [Tra	96.17
PTZ00329	155	eukaryotic translation initiation factor 1A; Provi	80.95

>KOG0816 consensus Protein involved in mRNA turnover [RNA processing and modification]

Probab=100.00  E-value=6.8e-65  Score=416.62  Aligned_cols=203  Identities=52%  Similarity=0.859  Sum_probs=198.8

Q ss_pred             CCCCCCCcceeccccccCChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc---
Q 035720            1 MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS---   76 (217)
Q Consensus         1 mp~skr~~~v~ltk~~kk~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A---   76 (217)
                      ||||||+|.||||+|+||++|+|+.++++|++++++|+++||+++.|||+.-+++||.+|+ +|+|++||| +|++|   
T Consensus         1 MprSkRdk~vtL~kt~KKg~e~K~~i~~~ir~~vd~Y~~v~Vf~~~nMRn~~lk~iR~~~k-~sr~f~GknKVm~vaLG~   79 (223)
T KOG0816|consen    1 MPRSKRDKKVTLTKTAKKGKEKKEAIVEEIREAVDKYPYVFVFEVPNMRNTTLKEIRQDFK-NSRFFFGKNKVMQVALGR   79 (223)
T ss_pred             CCccccccccchhHhhhhhHHHHHHHHHHHHHHHhhCCeEEEEEcCCcchHHHHHHHHHhh-ccceecchhhHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999 899999999 99999   


Q ss_pred             --------ccccccccccCcEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCc
Q 035720           77 --------QAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMP  148 (217)
Q Consensus        77 --------~~~~L~~~L~G~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgip  148 (217)
                              ++++++..|+|.+||+|||.++.++.++|.+|...+|||+|++||.+|+||+||+.+++|+|+|+||+||||
T Consensus        80 ~~~dE~~~~l~klskll~G~~GLlFTd~~keeV~e~f~sy~~~DyaR~g~vA~~Tv~ip~Gpl~~f~hsmEP~lRklglP  159 (223)
T KOG0816|consen   80 SREDEYKENLYKLSKLLKGSVGLLFTDMSKEEVIEWFRSYVEEDYARAGDVAPETVTIPEGPLEQFAHSMEPQLRKLGLP  159 (223)
T ss_pred             CchhhHHHHHHHhhhhccCceEEEecCCCHHHHHHHHHHHHHHhhhccCCcCcceEeecCcchhhcccccchhhHhhcCc
Confidence                    799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecceEEEecceEEEecCcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEE
Q 035720          149 VRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFEL  204 (217)
Q Consensus       149 tki~~G~i~i~~d~~v~k~G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~  204 (217)
                      |++++|+|+|.+||+||++|++++++||+||++||+++++|++.++++|+..+.+.
T Consensus       160 t~lk~G~vtL~sdy~VCeEG~~Ld~rqA~ILKlfg~kma~Fkl~~~~~w~~s~~~~  215 (223)
T KOG0816|consen  160 TKLKKGVVTLLSDYTVCEEGDVLDPRQAKILKLFGKKMAKFKLAVKAYWSKSSGQK  215 (223)
T ss_pred             eeecCCeEEEecCceeecCCcccCHHHHHHHHHHhHhhHhheEEEEEEEcCcccee
Confidence            99999999999999999999999999999999999999999999999999655443

>PTZ00135 60S acidic ribosomal protein P0; Provisional

Probab=100.00  E-value=6.2e-60  Score=418.85  Aligned_cols=190  Identities=22%  Similarity=0.364  Sum_probs=183.6

Q ss_pred             ccCChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc---------ccccccccc
Q 035720           16 KKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS---------QAYKVSKFL   85 (217)
Q Consensus        16 ~kk~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A---------~~~~L~~~L   85 (217)
                      ++.+++||.+++++|++++++|+.++|++|+||+++|+++||+.||++++++|||| ||++|         +++.|.++|
T Consensus         3 ~~~~re~K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~~~~l~~L~~~L   82 (310)
T PTZ00135          3 KPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPHV   82 (310)
T ss_pred             cchhHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCcccccChHHHHhhc
Confidence            45678999999999999999999999999999999999999999998899999999 99999         278999999


Q ss_pred             cCcEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEE
Q 035720           86 CGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVC  165 (217)
Q Consensus        86 ~G~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~  165 (217)
                      +|++||+|||+||.+++++|.+|++++|||+|.+||+||+||+|||+ |+|+++++||+|||||+|++|+|+|.+|++||
T Consensus        83 kG~~gliFTn~dp~ev~k~l~~~k~~~~AKaG~iAp~dv~ip~G~t~-~~P~~~~~fq~LgipTkI~kG~I~I~~d~~v~  161 (310)
T PTZ00135         83 KGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTG-MDPSQTSFFQALGIATKIVKGQIEITNEVHLI  161 (310)
T ss_pred             cCCEEEEEECCCHHHHHHHHHHcCCccccccCCCCCceEEEcCCCCC-CCcchhhHHHHcCCceEecCCeEEEecCeEEe
Confidence            99999999999999999999999999999999999999999999998 88889999999999999999999999999999


Q ss_pred             ecCcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEcc
Q 035720          166 EEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYR  206 (217)
Q Consensus       166 k~G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~~  206 (217)
                      ++||+||++||+||++|||+|++|+|+|+++||+|.+|.-+
T Consensus       162 k~Ge~v~~~~A~LL~~L~I~p~~~~l~~~~~yd~g~~~~~~  202 (310)
T PTZ00135        162 KEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAK  202 (310)
T ss_pred             cCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEECCeEeCHH
Confidence            99999999999999999999999999999999999998843

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=100.00  E-value=4.1e-59  Score=413.81  Aligned_cols=187  Identities=20%  Similarity=0.335  Sum_probs=179.5

Q ss_pred             ChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc------c-----cccc-----
Q 035720           19 GKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS------Q-----AYKV-----   81 (217)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A------~-----~~~L-----   81 (217)
                      .++||.+++++|++++++|++++||+++|++++|||+||+.||++++++|||| ||++|      +     +++|     
T Consensus         4 ~~~~K~~~v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~   83 (323)
T PTZ00240          4 ITTAKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQC   83 (323)
T ss_pred             hhHHHHHHHHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhhc
Confidence            36789999999999999999999999999999999999999998899999999 99999      1     5566     


Q ss_pred             --cccccCcEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEe
Q 035720           82 --SKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELV  159 (217)
Q Consensus        82 --~~~L~G~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~  159 (217)
                        .++|+|++||+|||+||+++.++|++|+.++|||+|++||+||+||+|||+ |+|+++++||+|||||+|++|+|+|.
T Consensus        84 ~~~~~l~GnvgliFTn~~p~ev~~~l~~~k~~a~AraG~IAp~dVvvpaG~T~-~~P~~~s~fq~LGIpTkI~kGkIeI~  162 (323)
T PTZ00240         84 EEKNLLSGNTGLIFTNNEVQEITSVLDSHRVKAPARVGAIAPCDVIVPAGSTG-MEPTQTSFFQALNIATKIAKGMVEIV  162 (323)
T ss_pred             cccccccCCEEEEEeCCCHHHHHHHHHHcCCcccccCCCCCCceEEECCCCCC-CCCcchHHHHHcCCCeEecCcEEEEe
Confidence              499999999999999999999999999999999999999999999999999 88889999999999999999999999


Q ss_pred             cceEEEecCcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEcc
Q 035720          160 SDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYR  206 (217)
Q Consensus       160 ~d~~v~k~G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~~  206 (217)
                      +|++||++||+||++||+||++|||+|++|+|+|+++||+|.+|.-+
T Consensus       163 ~d~~v~k~Ge~V~~~~A~LL~~L~IkP~~~gl~l~~vyd~g~i~~~~  209 (323)
T PTZ00240        163 TEKKVLSVGDKVDNSTATLLQKLNISPFYYQVEVLSVWDRGVLFTRE  209 (323)
T ss_pred             cCeEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEeCCeecCHH
Confidence            99999999999999999999999999999999999999999998743

>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

Probab=100.00  E-value=3.7e-56  Score=366.60  Aligned_cols=165  Identities=24%  Similarity=0.445  Sum_probs=161.1

Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc---------ccccccccccCcEE
Q 035720           21 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS---------QAYKVSKFLCGNTG   90 (217)
Q Consensus        21 e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A---------~~~~L~~~L~G~~a   90 (217)
                      +||.+++++|++++++|++++|++|+||+++|+++||+.||++++|+|||| ||++|         +++.|.++|+|++|
T Consensus         1 ~~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~~~L~~~l~G~~~   80 (175)
T cd05795           1 EWKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVG   80 (175)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhCCCEEEEechHHHHHHHHhcccccccHHHHHHHhcCCEE
Confidence            689999999999999999999999999999999999999998799999999 99999         27789999999999


Q ss_pred             EEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEEecCcc
Q 035720           91 LFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKP  170 (217)
Q Consensus        91 liFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G~~  170 (217)
                      |+||++||++++++|++|+.++|||+|++||+||+||+|||+ |||+++++||+|||||+|++|+|+|.+|++||++||+
T Consensus        81 liFt~~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~t~-~~p~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G~~  159 (175)
T cd05795          81 FIFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPAGPTG-MPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKGEK  159 (175)
T ss_pred             EEEECCCHHHHHHHHHHcCCcccccCCCccCceEEEcCCCcC-CCCCchHHHHHcCCceEEecCEEEEecCeEEecCCCC
Confidence            999999999999999999999999999999999999999999 8888899999999999999999999999999999999


Q ss_pred             cChhHHHHHHHcCCce
Q 035720          171 LSPESARILRLLGIKM  186 (217)
Q Consensus       171 i~~~qA~lL~~lgi~p  186 (217)
                      ||++||+||++|||+|
T Consensus       160 v~~~~A~lL~~l~i~P  175 (175)
T cd05795         160 VGASEATLLNKLNIKP  175 (175)
T ss_pred             cCHHHHHHHHHcCCCC
Confidence            9999999999999998

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=100.00  E-value=3.4e-54  Score=385.92  Aligned_cols=189  Identities=25%  Similarity=0.369  Sum_probs=184.6

Q ss_pred             CChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc----c---cccccccccCcE
Q 035720           18 KGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS----Q---AYKVSKFLCGNT   89 (217)
Q Consensus        18 k~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A----~---~~~L~~~L~G~~   89 (217)
                      +.++||.++|++|+++|++|++++|++|+||+++|+++||++||+.++|+|||| ||++|    +   ++.|.++|+|++
T Consensus         3 ~~~e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~L~~~l~G~~   82 (330)
T PRK04019          3 HVPEWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGEEDLEKLEDYLEGQV   82 (330)
T ss_pred             chHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCcccHHHHHhhccCCE
Confidence            558999999999999999999999999999999999999999998799999999 99999    5   889999999999


Q ss_pred             EEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEEecCc
Q 035720           90 GLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK  169 (217)
Q Consensus        90 aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G~  169 (217)
                      ||+|||+||++++++|.+|+.++|||+|++||+||+||+|||+..||+++++||+|||||+|++|+|+|.+|++||++|+
T Consensus        83 alift~~dp~~v~k~l~~~~~~~~ak~G~iA~~divip~G~t~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~~~G~  162 (330)
T PRK04019         83 ALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVPAGPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVAKAGE  162 (330)
T ss_pred             EEEEECCCHHHHHHHHHHcCCcccCCCCCCCCCeEEEcCCCCCCCCcccHHHHHHcCCCeEecCCEEEEecCeEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEcc
Q 035720          170 PLSPESARILRLLGIKMATFKLHLICRWSAEDFELYR  206 (217)
Q Consensus       170 ~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~~  206 (217)
                      +|+++||++|++|||+|++|++++.++|++|.+|..+
T Consensus       163 ~v~~~~a~lL~~LgI~p~~~~~~i~a~~~~G~~~~~~  199 (330)
T PRK04019        163 VISPELANVLQKLGIKPIEVGLDLKAAYEDGVIYTPE  199 (330)
T ss_pred             CcCHHHHHHHHHcCCCHHHhhhHHHHHHhcCCccCHH
Confidence            9999999999999999999999999999999988754

>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

Probab=100.00  E-value=5.8e-51  Score=332.21  Aligned_cols=151  Identities=54%  Similarity=0.884  Sum_probs=147.4

Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc-----------ccccccccccCc
Q 035720           21 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS-----------QAYKVSKFLCGN   88 (217)
Q Consensus        21 e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A-----------~~~~L~~~L~G~   88 (217)
                      +||.+++++|+++|++|++++|++|+||+++|+++||++||+. +|+|||| ||++|           +++.|.++|+|+
T Consensus         1 e~K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~~-~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~   79 (163)
T cd05796           1 ELKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDS-RFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQ   79 (163)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcCC-EEEEEchHHHHHHHhhCccccccccHHHHHHHhCCC
Confidence            6999999999999999999999999999999999999999976 9999999 99999           277899999999


Q ss_pred             EEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEEecC
Q 035720           89 TGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG  168 (217)
Q Consensus        89 ~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G  168 (217)
                      +||+|||+||++++++|.+|+.++|||+|++||+||+||+|||+.+||+|+++||+|||||+|++|+|+|.+|++||++|
T Consensus        80 ~~lift~~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lgiptki~~G~I~i~~d~~v~k~G  159 (163)
T cd05796          80 VGLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPEGPLEQFPHSMEPQLRKLGLPTKLKKGVITLEADYVVCEEG  159 (163)
T ss_pred             EEEEEECCCHHHHHHHHHHcCCcccccCCCCCCceEEEeCCCCCCCCCCcchHHHHcCCCeEEeCCEEEEecCcEEECCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccC
Q 035720          169 KPLS  172 (217)
Q Consensus       169 ~~i~  172 (217)
                      |+||
T Consensus       160 ~~v~  163 (163)
T cd05796         160 KVLT  163 (163)
T ss_pred             CCCc
Confidence            9986

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS

>KOG0815 consensus 60S acidic ribosomal protein P0 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.7e-50  Score=332.48  Aligned_cols=195  Identities=20%  Similarity=0.319  Sum_probs=187.2

Q ss_pred             cccCChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc---------cccccccc
Q 035720           15 TKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS---------QAYKVSKF   84 (217)
Q Consensus        15 ~~kk~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A---------~~~~L~~~   84 (217)
                      ++...++||..+..++++++++|+.++++..+|+.+.|||++|+.||+++++.|||| +||+|         .++.+.++
T Consensus         2 ~~~~~~e~k~~y~~K~~~L~~~y~~~~~v~~dnv~s~ql~~ir~~lrg~a~vlmgkntm~rrair~~~~~~~~~~~llp~   81 (245)
T KOG0815|consen    2 VRADKAEKKAVYFTKLRQLFEEYPKCFVVGADNVGSTQLQNIRKQLRGDAVVLMGKNTMMRRAIRGHLENNPALEKLLPV   81 (245)
T ss_pred             cchhhhHHHHHHHHHHHHHHHhcCceEEEeecchhhHHHHHHHHHhcCceeeeechhHHHHHHHHhccCCcHHHHhhccc
Confidence            456678999999999999999999999999999999999999999999999999999 99999         46789999


Q ss_pred             ccCcEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEE
Q 035720           85 LCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVV  164 (217)
Q Consensus        85 L~G~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v  164 (217)
                      ++|+++|+||++|..++.+.+.++++.++||+|++||+||+||+++|+ |.|..++|||+|||||||.+|+|||.+|+.+
T Consensus        82 ~~g~vgfvftk~~L~ei~~~i~~n~~~apar~GaiAp~dV~V~~~nTg-~~P~ktsfFQaLgIpTKIsrGtiEIlsdV~l  160 (245)
T KOG0815|consen   82 VKGNVGFVFTKGDLKEIRKEIIENKVGAPARVGAIAPIDVTVPAQNTG-LGPEKTSFFQALGIPTKISRGTIEILSDVQL  160 (245)
T ss_pred             eeeceeEEEEeccHHHHHHHHHhcccccccccCCcCCceEEeccccCC-CCcchhhhhhhcCCceeeecceEEeccccee
Confidence            999999999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             EecCcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEccCCCc
Q 035720          165 CEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLD  210 (217)
Q Consensus       165 ~k~G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~~~~~~  210 (217)
                      +++||+|+++||.||.+|||+||.|||.+..+||||.+|.=|.-|.
T Consensus       161 ik~GDKVGaSEAtLLnmL~IsPFsyGLvv~qVyDnGsiy~pevLDi  206 (245)
T KOG0815|consen  161 IKTGDKVGASEATLLNMLNISPFSYGLVVQQVYDNGSIYNPEVLDI  206 (245)
T ss_pred             eccCCccChhHHHHHhhhCCCccccceEEEEEecCCcccChhhcCC
Confidence            9999999999999999999999999999999999999998654333

>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.1e-31  Score=220.95  Aligned_cols=165  Identities=18%  Similarity=0.287  Sum_probs=157.9

Q ss_pred             ChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcC-CCeEEEecc-hhhcc----ccccccccccCcEEEE
Q 035720           19 GKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP-SRLLWVGRY-PMRYS----QAYKVSKFLCGNTGLF   92 (217)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~-~~~~~v~KN-l~~~A----~~~~L~~~L~G~~ali   92 (217)
                      .++||.++|+++++.|++|++++|+||+|+++.|+++||++||+ +++++|+|| |+++|    +.+.|.++|+||+|++
T Consensus         4 ~~e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~lkV~KNtL~~rAl~~~~~e~l~~~l~Gp~ai~   83 (175)
T COG0244           4 AREWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALEEAGLEGLDDLLKGPTAIA   83 (175)
T ss_pred             cHHHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhCCcEEEEEhhHHHHHHHHhcchhhHHHhccCCeEEE
Confidence            46999999999999999999999999999999999999999996 599999999 99999    8888999999999999


Q ss_pred             EecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEEecCcccC
Q 035720           93 LTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLS  172 (217)
Q Consensus        93 Ft~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G~~i~  172 (217)
                      ||++||.+++|++.+|.++.    |++++.++.+++|+             .+++|+.+..|+|.+.++.++...|....
T Consensus        84 fs~~dp~~~~K~~~~f~k~~----~~~~~~~~~~~eg~-------------~l~~~~v~~~aklp~~~el~~~l~g~~~a  146 (175)
T COG0244          84 FSNEDPVAAAKLLKDFAKEA----GDKAPIKGGVPEGK-------------VLGAAEVIALAKLPSKEELVVMLLGVLQA  146 (175)
T ss_pred             EecCCHHHHHHHHHHHhhhh----cccceEEEEEecCc-------------ccCHHHHHHHhcCCcHHHHHHHHHHhhHh
Confidence            99999999999999987765    89999999999997             69999999999999999999999999999


Q ss_pred             hhHHHHHHHcCCceeEEEEEEEEEEeCCc
Q 035720          173 PESARILRLLGIKMATFKLHLICRWSAED  201 (217)
Q Consensus       173 ~~qA~lL~~lgi~p~~~~l~l~~~~~~g~  201 (217)
                      |.. .++..|++.|..+++++.++|++|.
T Consensus       147 p~~-~~~~~L~a~~~~~~~~~~a~~~~g~  174 (175)
T COG0244         147 PAT-KLLRALKAVPDKVGLKLLAAYEKGV  174 (175)
T ss_pred             hHH-HHHHHHhccHHHHhhHHHHhhccCC
Confidence            999 9999999999999999999999875

>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

Probab=99.88  E-value=7e-23  Score=164.47  Aligned_cols=113  Identities=28%  Similarity=0.409  Sum_probs=106.3

Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCC-CeEEEecc-hhhcc----ccccccccccCcEEEEEe
Q 035720           21 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPS-RLLWVGRY-PMRYS----QAYKVSKFLCGNTGLFLT   94 (217)
Q Consensus        21 e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~-~~~~v~KN-l~~~A----~~~~L~~~L~G~~aliFt   94 (217)
                      ++|..+++++++.|++|+.+++++|+|++++++++||++|++. ++++|+|| ||++|    +++.+.++|+|++|++||
T Consensus         1 ~~K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KNtl~~~Al~~t~~~~~~~~l~G~~~~~f~   80 (155)
T cd00379           1 EKKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKGTGFEELKPLLKGPTALAFT   80 (155)
T ss_pred             CchHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEEehHHHHHHHcCCCccchhhhCcCCEEEEEe
Confidence            5799999999999999999999999999999999999999964 89999999 99999    788999999999999999


Q ss_pred             cCCHHHHHHHHhhcccc---cccccCCCccceEEeCCCCCCCC
Q 035720           95 NMPKEEVESLFNKYEDY---DFARTGSTATEKVELPEGPLEQF  134 (217)
Q Consensus        95 ~~dp~~v~k~l~~~~~~---~~ak~G~ia~~dv~I~~G~~~~~  134 (217)
                      ++||.++++++.+|.+.   .++++|.++ .+|+.|.+.+..-
T Consensus        81 ~~~~~~~~k~~~~~~k~~~~~~~k~g~~~-~~v~~~~~~~~l~  122 (155)
T cd00379          81 NEDPVEVAKVLKDFAKENKKLFAKGGVVA-GKVLDPAGVTALA  122 (155)
T ss_pred             CCChHHHHHHHHHHHHhCCCceEEEEEEc-CEecCHHHHHHHh
Confidence            99999999999999988   899999999 8999999866533

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho

>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.87  E-value=4.7e-22  Score=149.08  Aligned_cols=93  Identities=22%  Similarity=0.353  Sum_probs=87.3

Q ss_pred             CChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcC-CCeEEEecc-hhhcc----ccc-cccccccCcEE
Q 035720           18 KGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP-SRLLWVGRY-PMRYS----QAY-KVSKFLCGNTG   90 (217)
Q Consensus        18 k~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~-~~~~~v~KN-l~~~A----~~~-~L~~~L~G~~a   90 (217)
                      +++++|.++++++++.|++|+.+++++|+|++++|+++||++||+ +++++|+|| ||++|    +.+ .|.++|+|++|
T Consensus         1 m~~~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KN~l~~~Al~~~~~~~~l~~~l~G~~~   80 (100)
T PF00466_consen    1 MTKEKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKKGGKFKVVKNTLMKKALKNTGFEEALSPLLKGPTA   80 (100)
T ss_dssp             -SCHHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEEEEECSHHHHHHHHHHHHTSSSSSCCTSSSEE
T ss_pred             CcHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcEEEEecHHHHHHHHhcCccccCccccccCCEE
Confidence            368999999999999999999999999999999999999999997 499999999 99999    666 79999999999


Q ss_pred             EEEecCCHHHHHHHHhhccc
Q 035720           91 LFLTNMPKEEVESLFNKYED  110 (217)
Q Consensus        91 liFt~~dp~~v~k~l~~~~~  110 (217)
                      ++||++||.++++++.+|.+
T Consensus        81 ~if~~~d~~~~~k~l~~~~K  100 (100)
T PF00466_consen   81 LIFSNEDPFEIAKILKKFAK  100 (100)
T ss_dssp             EEEESSSHHHHHHHHHHSTT
T ss_pred             EEEECCCHHHHHHHHHHhcC
Confidence            99999999999999998753

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....

>PRK00099 rplJ 50S ribosomal protein L10; Reviewed

Probab=99.85  E-value=3.1e-21  Score=158.32  Aligned_cols=104  Identities=15%  Similarity=0.263  Sum_probs=94.6

Q ss_pred             ChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcC-CCeEEEecc-hhhcc----ccccccccccCcEEEE
Q 035720           19 GKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP-SRLLWVGRY-PMRYS----QAYKVSKFLCGNTGLF   92 (217)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~-~~~~~v~KN-l~~~A----~~~~L~~~L~G~~ali   92 (217)
                      .|++|.+++++|++++++|+.+++++|+|++++|+++||++||+ +++++|+|| ||++|    +++.|.++|+|++|++
T Consensus         2 ~r~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~~~~~~l~~~l~G~~al~   81 (172)
T PRK00099          2 NREEKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRALEGTGFEGLDDLLKGPTAIA   81 (172)
T ss_pred             CHHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCCchhhhhhCcCCeEEE
Confidence            57899999999999999999999999999999999999999996 589999999 99999    8899999999999999


Q ss_pred             EecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCC
Q 035720           93 LTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPL  131 (217)
Q Consensus        93 Ft~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~  131 (217)
                      ||++||.++++++.+|.+..         ..+.+.+|.+
T Consensus        82 fs~~d~~~~~k~l~~f~K~~---------~~~~l~gg~~  111 (172)
T PRK00099         82 FSYEDPVAAAKVLKDFAKDN---------KKLEIKGGAI  111 (172)
T ss_pred             EeCCChHHHHHHHHHHHhhC---------cCceEEEEEE
Confidence            99999999999999986643         2356666654

>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

Probab=99.84  E-value=4.8e-21  Score=154.80  Aligned_cols=94  Identities=16%  Similarity=0.284  Sum_probs=89.2

Q ss_pred             ChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcC-CCeEEEecc-hhhcc----ccccccccccCcEEEE
Q 035720           19 GKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP-SRLLWVGRY-PMRYS----QAYKVSKFLCGNTGLF   92 (217)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~-~~~~~v~KN-l~~~A----~~~~L~~~L~G~~ali   92 (217)
                      .+++|.++++++++++++|+.+++++|+|++++|+++||++||+ +++++|+|| ||++|    +++.+.++|+|++|++
T Consensus         1 ~~~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~t~~~~l~~~l~G~~al~   80 (157)
T cd05797           1 NREKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGTGFEDLDDLLKGPTAIA   80 (157)
T ss_pred             ChHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCCchhhHhhCcCCEEEE
Confidence            37899999999999999999999999999999999999999996 489999999 99999    7889999999999999


Q ss_pred             EecCCHHHHHHHHhhccccc
Q 035720           93 LTNMPKEEVESLFNKYEDYD  112 (217)
Q Consensus        93 Ft~~dp~~v~k~l~~~~~~~  112 (217)
                      ||++||.++++++.+|.+..
T Consensus        81 f~~~d~~~~~k~l~~f~k~~  100 (157)
T cd05797          81 FSEEDPVAAAKVLKDFAKEN  100 (157)
T ss_pred             EeCCChHHHHHHHHHHHHhC
Confidence            99999999999999987754

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=97.33  E-value=0.00024  Score=64.20  Aligned_cols=164  Identities=13%  Similarity=0.133  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHhcCCeEEEEEecC----CCc---HHHHHHHHHhcCCCeEEEecc-hhhcc----ccccccccccC----
Q 035720           24 EVIVNSIRNAVENYKSIYVFSFEN----MRN---LKFKEFREQIKPSRLLWVGRY-PMRYS----QAYKVSKFLCG----   87 (217)
Q Consensus        24 ~~~v~~l~e~l~~y~~v~i~~~~g----l~~---~ql~~lR~~lr~~~~~~v~KN-l~~~A----~~~~L~~~L~G----   87 (217)
                      ...+.+||..+.....+.+.--+=    +..   ..+..|-..|++..-+.+.+. ....+    .+..-...=.|    
T Consensus        35 ~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~L~~~l~G~~alift~~dp~~v~k~l~~~~~~~~ak~G~iA~  114 (330)
T PRK04019         35 ARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGEEDLEKLEDYLEGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAP  114 (330)
T ss_pred             HHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCcccHHHHHhhccCCEEEEEECCCHHHHHHHHHHcCCcccCCCCCCCC
Confidence            445788888888764444432111    111   237778888887766777765 66555    11111111111    


Q ss_pred             cEEEE---EecCCHHHHHHHHhhcccccccccCC--CccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecce
Q 035720           88 NTGLF---LTNMPKEEVESLFNKYEDYDFARTGS--TATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDF  162 (217)
Q Consensus        88 ~~ali---Ft~~dp~~v~k~l~~~~~~~~ak~G~--ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~  162 (217)
                      ...++   -|+.+|..+...|.+...+..++.|.  +++.++++++|.+  +++.....|++|||+....++++     .
T Consensus       115 ~divip~G~t~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~~~G~~--v~~~~a~lL~~LgI~p~~~~~~i-----~  187 (330)
T PRK04019        115 EDIVVPAGPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVAKAGEV--ISPELANVLQKLGIKPIEVGLDL-----K  187 (330)
T ss_pred             CeEEEcCCCCCCCCcccHHHHHHcCCCeEecCCEEEEecCeEEecCCCC--cCHHHHHHHHHcCCCHHHhhhHH-----H
Confidence            11222   35678999999999999999999999  9999999999987  77788999999999999999988     5


Q ss_pred             EEEecCcccChhHHHHHHHcCCceeEEEEEEEEEEeCC
Q 035720          163 VVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAE  200 (217)
Q Consensus       163 ~v~k~G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g  200 (217)
                      .+...|..++++.+      +|.|..+...+..+|.++
T Consensus       188 a~~~~G~~~~~~~l------~i~~e~~~~~i~~A~~~a  219 (330)
T PRK04019        188 AAYEDGVIYTPEVL------AIDEEKYRSDIQEAAQNA  219 (330)
T ss_pred             HHHhcCCccCHHHc------cCCHHHHHHHHHHHHHHH
Confidence            66788999998877      677666665555555443

>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=96.17  E-value=0.012  Score=49.76  Aligned_cols=82  Identities=11%  Similarity=0.110  Sum_probs=72.2

Q ss_pred             HHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcC-CCeEEEecc-hhhcc----ccccccccccCcEEEEEecCCHH
Q 035720           26 IVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP-SRLLWVGRY-PMRYS----QAYKVSKFLCGNTGLFLTNMPKE   99 (217)
Q Consensus        26 ~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~-~~~~~v~KN-l~~~A----~~~~L~~~L~G~~aliFt~~dp~   99 (217)
                      ...++...++++..+.++.+--+++.++--.|..||. +.+|+..=| +++.+    .++.|.+.+.||.+++|+. |+.
T Consensus        78 ~~re~~~v~~~~R~~Avcq~~~v~a~d~~~~r~QLrk~ni~~ksygnkIlk~~~~~t~y~~l~plfvgnh~ill~~-d~~  156 (245)
T KOG4241|consen   78 NLREDWMVREEFRVMAVCQFLPVPARDLWFARNQLRKKNIEFKSYGNKILKKIFDKTPYSSLNPLFVGNHAILLAK-DIS  156 (245)
T ss_pred             HHHHHHHHHhhhhheeeeecccCcHHHHHHHHHHHHhccchhhhchHHHHHHHHhcCchhhhhhheeccceEEEcC-ChH
Confidence            4456788899999999999999999999999999995 689999999 99999    7899999999999999985 567


Q ss_pred             HHHHHHhhc
Q 035720          100 EVESLFNKY  108 (217)
Q Consensus       100 ~v~k~l~~~  108 (217)
                      +++.++...
T Consensus       157 kik~~lri~  165 (245)
T KOG4241|consen  157 KIKSILRIT  165 (245)
T ss_pred             HHHHHHHHH
Confidence            777777554

>PTZ00329 eukaryotic translation initiation factor 1A; Provisional

Probab=80.95  E-value=3.1  Score=33.78  Aligned_cols=52  Identities=19%  Similarity=0.257  Sum_probs=38.7

Q ss_pred             CCceEEecceEEEe-cceEEE-------ecCc---ccChhHHHHHHHcCCceeEEEEEEEEEEe
Q 035720          146 GMPVRLNKGVVELV-SDFVVC-------EEGK---PLSPESARILRLLGIKMATFKLHLICRWS  198 (217)
Q Consensus       146 giptki~~G~i~i~-~d~~v~-------k~G~---~i~~~qA~lL~~lgi~p~~~~l~l~~~~~  198 (217)
                      -||.|+.+ .|||. .|++++       .+|+   ..++.|++-|+..|.=|..|.+.=.-.+.
T Consensus        60 ~I~GKmRK-~IWI~~GD~VlVel~~yd~~KgdIi~Ry~~devr~Lk~~g~~P~~~~~~~~~~~~  122 (155)
T PTZ00329         60 HIRGKMRK-RVWINIGDIILVSLRDFQDSKADVILKYTPDEARALKQHGELPETAKINETDIFD  122 (155)
T ss_pred             Eeecccee-eEEecCCCEEEEeccCCCCCEEEEEEEcCHHHHHHHHHcCCCCcceeeccccccC
Confidence            36777776 46665 466655       3444   46899999999999999999988766664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
3izs_s	312	Localization Of The Large Subunit Ribosomal Protein		6e-10
3u5i_q	312	The Structure Of The Eukaryotic Ribosome At 3.0 A R		7e-10
3o5h_M	312	Yeast 80s Ribosome. This Entry Consists Of The 60s		6e-09
3j21_k	339	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-08
3a1y_G	284	The Structure Of Protein Complex Length = 284		1e-06
1jj2_G	348	Fully Refined Crystal Structure Of The Haloarcula M		5e-06
3cc2_G	348	The Refined Crystal Structure Of The Haloarcula Mar		5e-06

>pdb|3IZS|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 312

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 30  IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY-------- 79
           +R  +E YKS++V   +N+ + +  E R++++   ++ +G+  M  R  + +        
Sbjct: 15  LREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFE 74
Query: 80  KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
           K+  F+ GN G   TN P  E++++         AR G+ A E + +           ME
Sbjct: 75  KLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWV-----RAVNTGME 129
Query: 140 P----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
           P    F +  G+P ++ +G +E+VSD  V + G  +    A +L LL I   TF L ++
Sbjct: 130 PGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVV 188

>pdb|3U5I|QQ Chain q, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome B Length = 312

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 30  IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY-------- 79
           +R  +E YKS++V   +N+ + +  E R++++   ++ +G+  M  R  + +        
Sbjct: 15  LREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFE 74
Query: 80  KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
           K+  F+ GN G   TN P  E++++         AR G+ A E + +           ME
Sbjct: 75  KLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWV-----RAVNTGME 129
Query: 140 P----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
           P    F +  G+P ++ +G +E+VSD  V + G  +    A +L LL I   TF L ++
Sbjct: 130 PGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVV 188

>pdb|3O5H|M Chain M, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The Second 80s In The Asymmetric Unit Length = 312

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 30  IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY-------- 79
           +R  +E YKS++V   +N+ + +  E R++++   ++ +G+  M  R  + +        
Sbjct: 15  LREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFE 74
Query: 80  KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
           K+  F+ G  G   TN P  E++++         AR G+ A E + +           ME
Sbjct: 75  KLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWV-----RAVNTGME 129
Query: 140 P----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
           P    F +  G+P ++ +G +E+VSD  V + G  +    A +L LL I   TF L ++
Sbjct: 130 PGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVV 188

>pdb|3J21|KK Chain k, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 339

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 18/203 (8%)
Query: 27  VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSR-LLWVGRYPMRYSQAYKVSK-- 83
           V  + N +++Y  + +    +M      + R  I+ +  LL V R  +      KV++  
Sbjct: 12  VEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQEL 71
Query: 84  ----------FLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQ 133
                     ++ G  G+ +T M   ++     +      A+ G+   + V +P GP   
Sbjct: 72  GKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSL 131
Query: 134 FTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHL 193
               +   ++  G+P R+ +G V +  D VV + G+ ++PE A IL  LGI+     L L
Sbjct: 132 APGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDL 191
Query: 194 ICRWSAEDFELYRE---GLDESD 213
           +  +  ED  +Y      +DES+
Sbjct: 192 LAVY--EDGIIYTPDVLAIDESE 212

>pdb|3A1Y|G Chain G, The Structure Of Protein Complex Length = 284

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 80  KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
           K+ +++    G+ +TNM   ++     +      A+ G+   + V +P GP       + 
Sbjct: 78  KLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIV 137
Query: 140 PFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSA 199
             ++  G+P R+ KG V +  D  V + G+ ++PE A IL  LGI+     L ++  +  
Sbjct: 138 GQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVY-- 195
Query: 200 EDFELY 205
           ED  +Y
Sbjct: 196 EDGIVY 201

>pdb|1JJ2|G Chain G, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 348

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 27  VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYKVSK--- 83
           V++I   +E+Y+S+ V +   + + + ++ R  +  +  L V R  +       V     
Sbjct: 20  VDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDDGLE 79
Query: 84  ----FLCGNTGLFLTNMPKEEVESLFNKYEDYDFART------GSTATEKVELPEGPLEQ 133
               ++ G  GL  T+      ++ F+ +++ + ++T      G  A   + +PEG    
Sbjct: 80  DLNGYITGQVGLIGTD------DNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEG---D 130
Query: 134 FTHEMEPF---LRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFK 190
              +  PF   L+  G   R+ +G ++++SD  V + G+ +S E + +L  LGI+     
Sbjct: 131 TGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVG 190
Query: 191 LHL 193
           L L
Sbjct: 191 LDL 193

>pdb|3CC2|G Chain G, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins Length = 348

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 27  VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYKVSK--- 83
           V++I   +E+Y+S+ V +   + + + ++ R  +  +  L V R  +       V     
Sbjct: 20  VDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDDGLE 79
Query: 84  ----FLCGNTGLFLTNMPKEEVESLFNKYEDYDFART------GSTATEKVELPEGPLEQ 133
               ++ G  GL  T+      ++ F+ +++ + ++T      G  A   + +PEG    
Sbjct: 80  DLNGYITGQVGLIGTD------DNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEG---D 130
Query: 134 FTHEMEPF---LRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFK 190
              +  PF   L+  G   R+ +G ++++SD  V + G+ +S E + +L  LGI+     
Sbjct: 131 TGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVG 190
Query: 191 LHL 193
           L L
Sbjct: 191 LDL 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
3jsy_A	213	Acidic ribosomal protein P0 homolog; ribonucleopro	100.0
3j21_k	339	Acidic ribosomal protein P0 homolog; archaea, arch	100.0
3iz5_s	319	60S acidic ribosomal protein P0 (L10P); eukaryotic	100.0
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	100.0
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	100.0
1vq8_G	348	Acidic ribosomal protein P0 homolog; ribosome 50S,	100.0
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	100.0
2j01_J	173	50S ribosomal protein L10; ribosome, tRNA, paromom	99.87
1zav_A	180	50S ribosomal protein L10; ribosome structure and	99.86
3sgf_H	165	50S ribosomal protein L10; typeii release factor b	99.83
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	86.67

>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=2.6e-62  Score=413.22  Aligned_cols=185  Identities=17%  Similarity=0.279  Sum_probs=181.6

Q ss_pred             hhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc-----------ccccccccccC
Q 035720           20 KEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS-----------QAYKVSKFLCG   87 (217)
Q Consensus        20 ~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A-----------~~~~L~~~L~G   87 (217)
                      ++||+++|++|++++++|++++|++|+||+++|+++||++||++++++|||| ||++|           ++++|.++|+|
T Consensus         2 ~e~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G   81 (213)
T 3jsy_A            2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVER   81 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred             chHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence            5899999999999999999999999999999999999999998789999999 99999           48899999999


Q ss_pred             cEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEEec
Q 035720           88 NTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEE  167 (217)
Q Consensus        88 ~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~k~  167 (217)
                      |+||+||++||.+++++|.+|+.++|||+|++||+||+||+|||+..||||+++||+|||||+|++|+|+|.+|++||++
T Consensus        82 ~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~ip~G~t~~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~  161 (213)
T 3jsy_A           82 GAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKK  161 (213)
T ss_dssp             SEEEEEESSCHHHHHHHHHHSCEEECCCTTCBCSSCEEECSEEEEECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECT
T ss_pred             CeEEEEeCCCHHHHHHHHHHcCCcccccCCCcCCceEEECCCCCCCCCCccHHHHHHcCCceEeecCeEEEccceEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEE
Q 035720          168 GKPLSPESARILRLLGIKMATFKLHLICRWSAEDFEL  204 (217)
Q Consensus       168 G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~  204 (217)
                      ||+||++||+||++|||+|++|+|.|.++||+|.+|.
T Consensus       162 G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~  198 (213)
T 3jsy_A          162 GEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYT  198 (213)
T ss_dssp             TSBCCHHHHHHHHHTTCCCEEESCEEEEEEETTEEEC
T ss_pred             CCCcCHHHHHHHHHcCCCcEEEEEEEEEEEeCCceeC
Confidence            9999999999999999999999999999999999996

>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=3.8e-59  Score=417.68  Aligned_cols=188  Identities=22%  Similarity=0.376  Sum_probs=181.1

Q ss_pred             CChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCC-CeEEEecc-hhhcc-----------cccccccc
Q 035720           18 KGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPS-RLLWVGRY-PMRYS-----------QAYKVSKF   84 (217)
Q Consensus        18 k~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~-~~~~v~KN-l~~~A-----------~~~~L~~~   84 (217)
                      +.++||.++|++|++++++|+++||++|+||+++|+++||+.||+. ++|+|||| ||++|           ++++|.++
T Consensus         3 ~~~e~K~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~   82 (339)
T 3j21_k            3 HVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINY   82 (339)
T ss_dssp             ---CCTTTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHH
Confidence            4688999999999999999999999999999999999999999965 89999999 99999           37899999


Q ss_pred             ccCcEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEE
Q 035720           85 LCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVV  164 (217)
Q Consensus        85 L~G~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v  164 (217)
                      |+||+||+||++||.+++++|.+|+.++|||+|++||+||+||+|||++.||||+++||+|||||+|++|+|+|.+|++|
T Consensus        83 L~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~Ip~G~t~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v  162 (339)
T 3j21_k           83 IEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVV  162 (339)
T ss_dssp             CCTTEEEEEESSCHHHHHHHHHHSCCCCCCCTTCBCSSCEEECCEECSCCSSHHHHHHHHHTCCEEEETTEEEECSCEEE
T ss_pred             hcCCeEEEEECCCHHHHHHHHHHcCCcccccCCCcCCceEEecCCCCCCCCCccHHHHHHcCCCeEeccCeEEEccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEc
Q 035720          165 CEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELY  205 (217)
Q Consensus       165 ~k~G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~  205 (217)
                      |++|++||++||+||++|||+|++|+|+|.++||+|.+|.-
T Consensus       163 ~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~  203 (339)
T 3j21_k          163 LKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTP  203 (339)
T ss_dssp             ECTTSBCCHHHHHHHHHHTCCCSCCSCEEEEEEETTEEECH
T ss_pred             EecCCCcCHHHHHHHHHcCCCcEEeeeeEEEEEeCCcEecH
Confidence            99999999999999999999999999999999999999963

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8

Probab=100.00  E-value=2.1e-58  Score=408.37  Aligned_cols=187  Identities=24%  Similarity=0.411  Sum_probs=106.4

Q ss_pred             ChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc---------ccccccccccCc
Q 035720           19 GKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS---------QAYKVSKFLCGN   88 (217)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A---------~~~~L~~~L~G~   88 (217)
                      ++++|+++|++|++++++|+.++|++|+||+++|+++||++||+.++++|||| ||++|         ++++|.++|+||
T Consensus         4 ~re~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L~G~   83 (312)
T 3u5i_q            4 IREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGN   83 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGGGGTGGGCCSS
T ss_pred             cHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccChHHHHHhccCC
Confidence            57999999999999999999999999999999999999999998789999999 99999         478999999999


Q ss_pred             EEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEEecC
Q 035720           89 TGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG  168 (217)
Q Consensus        89 ~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G  168 (217)
                      +||+||++||.+++++|.+|++++|||+|++||+||+||+|||+ |+|.++++||+|||||+|++|+|+|.+|++||++|
T Consensus        84 ~gl~Ft~~dp~~v~k~l~~~k~~~pAr~GaiAp~dV~Ip~G~tg-~~P~~~s~fq~Lgiptki~kG~I~I~~d~~v~k~G  162 (312)
T 3u5i_q           84 VGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTG-MEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAG  162 (312)
T ss_dssp             EEEEEESSCHHHHHHHHHTSSCCC--------------------------------------------------------
T ss_pred             EEEEEECCCHHHHHHHHHhccCcccccCCCcCCceEEECCCCCC-CCCcchHHHHHcCCCeEeeCCEEEEccceEEEeCC
Confidence            99999999999999999999999999999999999999999999 77788999999999999999999999999999999


Q ss_pred             cccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEcc
Q 035720          169 KPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYR  206 (217)
Q Consensus       169 ~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~~  206 (217)
                      |+||++||+||++|||+|++|+|.|.++||+|.+|.-+
T Consensus       163 ~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~i~~~~  200 (312)
T 3u5i_q          163 NKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPXX  200 (312)
T ss_dssp             ---------------------CCEEEEEEESSCCCCST
T ss_pred             CCcCHHHHHHHHHcCcCcEEEEEEEEEEecCCceeccc
Confidence            99999999999999999999999999999999998643

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=8.2e-59  Score=411.73  Aligned_cols=190  Identities=18%  Similarity=0.321  Sum_probs=0.0

Q ss_pred             ccCChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc---------ccccccccc
Q 035720           16 KKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS---------QAYKVSKFL   85 (217)
Q Consensus        16 ~kk~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A---------~~~~L~~~L   85 (217)
                      +...++||.++|++|++++++|+.++|++|+||+++|+++||++||++++++|||| ||++|         ++++|.++|
T Consensus         3 ~~~~~e~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~~e~L~~~L   82 (317)
T 2zkr_g            3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHI   82 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccchHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCcccccchhhhhhcc
Confidence            34568899999999999999999999999999999999999999998799999999 99999         478899999


Q ss_pred             cCcEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEE
Q 035720           86 CGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVC  165 (217)
Q Consensus        86 ~G~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~  165 (217)
                      +||+||+||++||.+++++|.+|+.++|||+|++||+||+||+|||+ |+|+++++||+|||||+|++|+|+|.+|++||
T Consensus        83 ~G~~al~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~Ip~G~t~-~~p~~~~~fq~LgipTkI~kG~I~i~~d~~v~  161 (317)
T 2zkr_g           83 RGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG-LGPEKTSFFQALGITTKISRGTIEILSDVQLI  161 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCEEEEEECCCHHHHHHHHHHhCccchhccCCcCCceEEeCCCCCC-CCCcchHHHHHcCCCeEeeCCeEEEecceEEe
Confidence            99999999999999999999999999999999999999999999999 88888999999999999999999999999999


Q ss_pred             ecCcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEcc
Q 035720          166 EEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYR  206 (217)
Q Consensus       166 k~G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~~  206 (217)
                      ++||+||++||+||++|||+|++|+|.|+++||+|.+|.-+
T Consensus       162 k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~~~~~~  202 (317)
T 2zkr_g          162 KTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPE  202 (317)
T ss_dssp             -----------------------------------------
T ss_pred             cCCCCcCHHHHHHHHHcCCCceeeeeeeeEEEecCcccchH
Confidence            99999999999999999999999999999999999998743

>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...

Probab=100.00  E-value=5.5e-58  Score=410.27  Aligned_cols=192  Identities=19%  Similarity=0.261  Sum_probs=24.7

Q ss_pred             cccCChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc----c--cccccccccC
Q 035720           15 TKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS----Q--AYKVSKFLCG   87 (217)
Q Consensus        15 ~~kk~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A----~--~~~L~~~L~G   87 (217)
                      +.++.++||.++|++|++++++|+.++|++|+||+++|+++||+.||+.++|+|+|| ||++|    +  ++.|.++|+|
T Consensus         8 ~~k~~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~le~L~~~LkG   87 (348)
T 1vq8_G            8 KTETIPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDDGLEDLNGYITG   87 (348)
T ss_dssp             ----CCHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHTC--------------
T ss_pred             cccccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCcchHHHHHhccC
Confidence            346789999999999999999999999999999999999999999997799999999 99999    3  8999999999


Q ss_pred             cEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEEec
Q 035720           88 NTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEE  167 (217)
Q Consensus        88 ~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~k~  167 (217)
                      |+|++||++||.+++++|.+|++++|||+|++||++|+||+|+|++.||+|+++||+|||||+|++|+|+|.+|++||++
T Consensus        88 ~tal~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~IpaG~t~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~v~k~  167 (348)
T 1vq8_G           88 QVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDT  167 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCHHHHHHHHHHhcccchhhcCCcCCceEEeCCCCCCCCCCchHHHHHHcCCCEEeccCceEecCceEEeeC
Confidence            99999999999999999999999999999999999999999999977999999999999999999999999999999999


Q ss_pred             CcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEcc
Q 035720          168 GKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYR  206 (217)
Q Consensus       168 G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~~  206 (217)
                      |++||++||+||++|||+|++|+|.|+++|++|.+|.-+
T Consensus       168 G~~v~~~~A~LL~~LgI~p~~f~l~l~~~~d~g~~~~~~  206 (348)
T 1vq8_G          168 GEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPE  206 (348)
T ss_dssp             ---------------------------------------
T ss_pred             CCCcCHHHHHHHHHcCCCceeeeeeeEEEEeCCcccCHH
Confidence            999999999999999999999999999999999988743

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.8e-54  Score=379.46  Aligned_cols=190  Identities=22%  Similarity=0.341  Sum_probs=112.0

Q ss_pred             cCChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCC-CeEEEecc-hhhcc----c-------cccccc
Q 035720           17 KKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPS-RLLWVGRY-PMRYS----Q-------AYKVSK   83 (217)
Q Consensus        17 kk~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~-~~~~v~KN-l~~~A----~-------~~~L~~   83 (217)
                      ++.++||.++|++|++++++|+.++|++|+||+++|+++||++||+. ++++|||| ||++|    +       +++|.+
T Consensus         2 ~~~~e~K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~   81 (284)
T 3a1y_G            2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVE   81 (284)
T ss_dssp             CSSCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSC
T ss_pred             CCcHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhh
Confidence            56789999999999999999999999999999999999999999964 99999999 99999    3       899999


Q ss_pred             cccCcEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceE
Q 035720           84 FLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFV  163 (217)
Q Consensus        84 ~L~G~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~  163 (217)
                      +|+||+|++||++||.+++++|.+|+.++|||+|.+|+++|+||+|+++..||+++++||+|||||+|++|+|+|.+|++
T Consensus        82 ~l~G~~al~Ft~~dp~~vak~l~~f~~~~~ar~Gaia~~dv~ip~g~~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~  161 (284)
T 3a1y_G           82 YIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTT  161 (284)
T ss_dssp             CCCTTEEEEEESSCHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred             hcCCCEEEEEECCCHHHHHHHHHHhcchhhhhcCCccceeEEecCCCCCCCCcchHHHHHHCCCCeEEecCeeEeecceE
Confidence            99999999999999999999999999999999999999999999999997799999999999999999999999999999


Q ss_pred             EEecCcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEcc
Q 035720          164 VCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYR  206 (217)
Q Consensus       164 v~k~G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~~  206 (217)
                      ||++|++|+++||+||++|||+|++|++.+.++|++|.+|.-+
T Consensus       162 v~~~G~~l~~~~a~lL~~L~i~~~~~~l~i~~~~~~~~~~~~~  204 (284)
T 3a1y_G          162 VLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPD  204 (284)
T ss_dssp             ---------------------CCCCCCCEEEEEEETTEEECHH
T ss_pred             EEecCCCcCHHHHHHHHHcCCCHHHHHHHHHHHhhccccCCHH
Confidence            9999999999999999999999999999999999999998854

>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A

Probab=99.86  E-value=1.5e-22  Score=166.30  Aligned_cols=107  Identities=17%  Similarity=0.244  Sum_probs=96.0

Q ss_pred             ChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcC----CCeEEEecc-hhhcc----ccccccccccCcE
Q 035720           19 GKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP----SRLLWVGRY-PMRYS----QAYKVSKFLCGNT   89 (217)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~----~~~~~v~KN-l~~~A----~~~~L~~~L~G~~   89 (217)
                      .+++|.++|++|++.+++|+.+++++|+|++++|+++||++||+    +++++|+|| ||++|    +++.|.++|+||+
T Consensus         4 ~~~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G~~   83 (180)
T 1zav_A            4 TRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGPT   83 (180)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSSSE
T ss_pred             CHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccCChhhHHHhCcCCE
Confidence            48899999999999999999999999999999999999999995    589999999 99999    8999999999999


Q ss_pred             EEEEec-CCHHHHHHHHhhcccccccccCCCccceEEeCCCCCC
Q 035720           90 GLFLTN-MPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLE  132 (217)
Q Consensus        90 aliFt~-~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~  132 (217)
                      |++||+ +||.++++++.+|.+..     .  ++.++|++|.++
T Consensus        84 a~~fs~~~dp~~~ak~l~~f~k~~-----~--~~~l~ikgg~~e  120 (180)
T 1zav_A           84 AVLYVTEGDPVEAVKIIYNFYKDK-----K--ADLSRLKGGFLE  120 (180)
T ss_dssp             EEEEESSSCTHHHHHHHHHHHHHT-----T--CCGGGEEEEEET
T ss_pred             EEEEecCCCHHHHHHHHHHHHHhC-----C--CCCeEEEEEEEC
Confidence            999999 99999999999986543     1  245667777554

>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*

Probab=99.83  E-value=1.9e-22  Score=163.60  Aligned_cols=93  Identities=16%  Similarity=0.145  Sum_probs=89.2

Q ss_pred             ChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcC-CCeEEEecc-hhhcc----ccccccccccCcEEEE
Q 035720           19 GKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP-SRLLWVGRY-PMRYS----QAYKVSKFLCGNTGLF   92 (217)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~-~~~~~v~KN-l~~~A----~~~~L~~~L~G~~ali   92 (217)
                      +|++|.++|++|++.|++|+.++++||+|++++|+++||++||+ +++++|+|| ||++|    +++.|.++|+||+|++
T Consensus         4 ~r~~K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G~tai~   83 (165)
T 3sgf_H            4 NLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLIA   83 (165)
T ss_dssp             HHHHHHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTCTTTCTTCSTTCCSCCC
T ss_pred             CHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcCCcchhHHhCcCCEEEE
Confidence            58999999999999999999999999999999999999999997 689999999 99999    8999999999999999


Q ss_pred             EecCCHHHHHHHHhhcccc
Q 035720           93 LTNMPKEEVESLFNKYEDY  111 (217)
Q Consensus        93 Ft~~dp~~v~k~l~~~~~~  111 (217)
                      ||++||.++++++.+|.+.
T Consensus        84 fs~~dp~~~aK~l~~f~K~  102 (165)
T 3sgf_H           84 YSMEHPGAAARLFKEFAKA  102 (165)
T ss_dssp             EEEECSSCSHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHh
Confidence            9999999999999998764

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=86.67  E-value=0.42  Score=41.05  Aligned_cols=149  Identities=13%  Similarity=0.063  Sum_probs=50.8

Q ss_pred             CcHHHHHHHHHhcCCCeEEEecc-hhhccccccccccccCc-EEEEEecCCHHH--HHHHHhh-----cccccccccCCC
Q 035720           49 RNLKFKEFREQIKPSRLLWVGRY-PMRYSQAYKVSKFLCGN-TGLFLTNMPKEE--VESLFNK-----YEDYDFARTGST  119 (217)
Q Consensus        49 ~~~ql~~lR~~lr~~~~~~v~KN-l~~~A~~~~L~~~L~G~-~aliFt~~dp~~--v~k~l~~-----~~~~~~ak~G~i  119 (217)
                      ....+.+||..+.+...+++..- =|+.+.+.+|...|++. +-+.+.+.....  +...-.+     +..-...-.|. 
T Consensus         8 K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~~l~G~-   86 (284)
T 3a1y_G            8 KKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRG-   86 (284)
T ss_dssp             TTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCCCTT-
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhhhcCCC-
Confidence            45678899999987556666655 55555677777778776 666666544322  2222211     11111111121 


Q ss_pred             ccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEEecCcccChhHHHHHHHcCCceeEEEEEEE-----
Q 035720          120 ATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI-----  194 (217)
Q Consensus       120 a~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G~~i~~~qA~lL~~lgi~p~~~~l~l~-----  194 (217)
                        .-+..-.    .-|......|.+...|.-...|.|...+.++....|+.++.+.+..|+.|||++...+.+|.     
T Consensus        87 --~al~Ft~----~dp~~vak~l~~f~~~~~ar~Gaia~~dv~ip~g~~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~  160 (284)
T 3a1y_G           87 --AGILVTN----MNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDT  160 (284)
T ss_dssp             --EEEEEES----SCHHHHHHHHHHCCCC---------------------------------------------------
T ss_pred             --EEEEEEC----CCHHHHHHHHHHhcchhhhhcCCccceeEEecCCCCCCCCcchHHHHHHCCCCeEEecCeeEeecce
Confidence              1122211    13445678899999999999999999999999999988888889999999999999999998     


Q ss_pred             EEEeCCceEE
Q 035720          195 CRWSAEDFEL  204 (217)
Q Consensus       195 ~~~~~g~~~~  204 (217)
                      .++..|+...
T Consensus       161 ~v~~~G~~l~  170 (284)
T 3a1y_G          161 TVLKAGEVIT  170 (284)
T ss_dssp             ----------
T ss_pred             EEEecCCCcC
Confidence            4555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1zava1	177	Ribosomal protein L10 {Thermotoga maritima [TaxId:	99.68

>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein L10-like
family: Ribosomal protein L10-like
domain: Ribosomal protein L10
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=3e-17  Score=132.21  Aligned_cols=93  Identities=15%  Similarity=0.234  Sum_probs=87.2

Q ss_pred             CChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcC----CCeEEEecc-hhhcc----ccccccccccCc
Q 035720           18 KGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP----SRLLWVGRY-PMRYS----QAYKVSKFLCGN   88 (217)
Q Consensus        18 k~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~----~~~~~v~KN-l~~~A----~~~~L~~~L~G~   88 (217)
                      ..|++|+.+|+++++.|++++.+++++|+|++++++++||++||+    +++++|+|| |+++|    +++.+.++|.|+
T Consensus         2 m~r~~K~~~v~~l~~~l~~s~~vv~~~y~gLtv~e~~~LR~~lre~~~~g~~~kV~KNtL~k~Al~~t~~~~l~~~l~g~   81 (177)
T d1zava1           2 LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGP   81 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSSS
T ss_pred             CCHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHHHhccCCeEEEEechHHHHHHHhcCCcchhhHHHhhc
Confidence            468999999999999999999999999999999999999999984    689999999 99999    899999999999


Q ss_pred             EEEEEe-cCCHHHHHHHHhhccc
Q 035720           89 TGLFLT-NMPKEEVESLFNKYED  110 (217)
Q Consensus        89 ~aliFt-~~dp~~v~k~l~~~~~  110 (217)
                      ++++|+ ++||.+++|++.+|.+
T Consensus        82 ~a~~~~~~~d~~~~aK~l~~f~k  104 (177)
T d1zava1          82 TAVLYVTEGDPVEAVKIIYNFYK  104 (177)
T ss_dssp             EEEEEESSSCTHHHHHHHHHHHH
T ss_pred             cceeeeecCCchhhhhHHHHHhh
Confidence            999996 6799999999999865