Citrus Sinensis ID: 035741
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 890 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LQV2 | 1107 | RNA-dependent RNA polymer | yes | no | 0.976 | 0.785 | 0.487 | 0.0 | |
| Q0DXS3 | 740 | Probable RNA-dependent RN | yes | no | 0.684 | 0.822 | 0.534 | 0.0 | |
| O82504 | 1133 | RNA-dependent RNA polymer | no | no | 0.737 | 0.578 | 0.369 | 1e-127 | |
| Q7XM31 | 1136 | Probable RNA-dependent RN | no | no | 0.746 | 0.584 | 0.358 | 1e-118 | |
| Q8LHH9 | 1218 | Probable RNA-dependent RN | no | no | 0.685 | 0.500 | 0.344 | 1e-108 | |
| Q9SG02 | 1196 | RNA-dependent RNA polymer | no | no | 0.689 | 0.513 | 0.346 | 1e-107 | |
| O14227 | 1215 | RNA-dependent RNA polymer | yes | no | 0.669 | 0.490 | 0.274 | 3e-66 | |
| Q5QMN4 | 1183 | Probable RNA-dependent RN | no | no | 0.264 | 0.198 | 0.282 | 1e-10 | |
| O82188 | 977 | Probable RNA-dependent RN | no | no | 0.215 | 0.196 | 0.265 | 6e-09 | |
| O82190 | 992 | Probable RNA-dependent RN | no | no | 0.233 | 0.209 | 0.278 | 2e-08 |
| >sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/1038 (48%), Positives = 630/1038 (60%), Gaps = 169/1038 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAAD 58
M K I ++GF + S + VK+FLE TG GTV ++V Q K G R +AIV+FT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 59 FIKCLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVFWS 118
I A ERL YG S+LKA ++ + + H G LK+ FGCQ+S KF WS
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISG--LKMFFGCQVSTKKFLTLWS 118
Query: 119 QENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGHSVS----------- 167
++V V +RK F S+ DY+LELS E+IWQI+LH P G S
Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178
Query: 168 --------------------------------------IGQSSAICLELPSRALIPKALK 189
IGQS+A CLELP +P +
Sbjct: 179 IFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 238
Query: 190 DFFHYKESLVQFTLL--------------------PGF------VFSCNSD--------- 214
+F +Y E L+ PGF +F N+
Sbjct: 239 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 298
Query: 215 ---------LNQDG------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAV 259
LNQ H LE LFHL ECCY+P WLR++Y+K +S G+ P SP +
Sbjct: 299 ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTI 358
Query: 260 ALDGGLIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTV 319
+LD GL+Y+ ++ VTP++VYF GPE+++SNRV+R Y I+NFLR+SFVDEDL K+ S
Sbjct: 359 SLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMD 418
Query: 320 LSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELT 379
LSP+ S+ +RRT++Y+R+ S LR+GIVIGDKKFE LAFS+SQ REN+ WMFA +T
Sbjct: 419 LSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRIT 475
Query: 380 AADIRERMGDFREIKNVTKYAARLGQSFASSREALHVDSN-------------------- 419
AA IR MGDF I+NV KYAARLGQSF+SSRE L+V S+
Sbjct: 476 AAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFS 535
Query: 420 --IGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK------------VTLRNNMFKYKS 465
IGKISAE A VA+KCG ++PSAFQIRYGGYK ++LR +M K++S
Sbjct: 536 DGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFES 595
Query: 466 ESTSLDILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEA 516
E+T LD+LA SKYQ R+ + L D+VFE+KQREVV RLDAILT + EA
Sbjct: 596 ENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEA 655
Query: 517 LELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMG 576
L LM+ ENTN+LK L+ CGYKPDAEPFLSMM Q F AS LLELRT+ RIFI G++MMG
Sbjct: 656 LGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMG 715
Query: 577 CLDEKGTLEYGQ------------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHM 618
CLDE TLEYGQ G +VVAK PCLHPGD+RVL+AV+VPAL+HM
Sbjct: 716 CLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNHM 775
Query: 619 VDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVT 678
VDCV+FP KG RPH NECSGSD DG+IYFVCWD + +PP +P YTP P +IL DVT
Sbjct: 776 VDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVT 835
Query: 679 IEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAA 738
IE+VEEYFA+YIVNDSLGII NAH +A EP KA S+ C +L K S DF KTGVAA
Sbjct: 836 IEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAA 895
Query: 739 TIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDT 798
IP L VK YPDFMEK DK YES++++G L+REV AP +IKSF + A + YD
Sbjct: 896 VIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDK 955
Query: 799 DMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDL 858
DMEV+GF+E + F + YD KLGNLMDYYGIKTEAE+LS IM M+KSF K+RD
Sbjct: 956 DMEVDGFEEYVDE--AFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDA 1013
Query: 859 EAISFSVRSLRKEARAWF 876
E+I +VR+LRKE + F
Sbjct: 1014 ESIGRAVRALRKETLSLF 1031
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RNA-dependent direct polymerase involved in antiviral silencing. Required for the production of some small RNAs (mainly 21 and some 22 nucleotides) derived from the crucifer-infecting tobamovirus (TMV-cg). Required for turnip mosaic virus (TuMV) silencing and accumulation of viral siRNAs. Involved in cucumber mosaic virus (CMV) silencing. Required for the biogenesis of viral secondary siRNAs, process that follows the production of primary siRNAs derived from viral RNA replication. Specifically targets the positive-strand of the 3 RNA genomes of CMV and preferentially amplifies the 5'-terminal siRNAs of each viral genomic RNA. Not involved in the production of siRNAs derived from a single-stranded 336-nucleotide satellite RNA of CMV. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 4EC: 8 |
| >sp|Q0DXS3|RDR1_ORYSJ Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2 | Back alignment and function description |
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| >sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q7XM31|RDR2_ORYSJ Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8LHH9|SHL2_ORYSJ Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1 | Back alignment and function description |
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| >sp|O14227|RDR1_SCHPO RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rdr1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5QMN4|RDR4_ORYSJ Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp. japonica GN=RDR4 PE=2 SV=2 | Back alignment and function description |
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| >sp|O82188|RDR5_ARATH Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana GN=RDR5 PE=2 SV=2 | Back alignment and function description |
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| >sp|O82190|RDR3_ARATH Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana GN=RDR3 PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 890 | ||||||
| 224111420 | 1102 | rna-dependent RNA polymerase [Populus tr | 0.984 | 0.794 | 0.521 | 0.0 | |
| 225424397 | 1121 | PREDICTED: RNA-dependent RNA polymerase | 0.992 | 0.787 | 0.501 | 0.0 | |
| 224099569 | 1139 | rna-dependent RNA polymerase [Populus tr | 0.976 | 0.762 | 0.512 | 0.0 | |
| 4138282 | 1116 | RNA-directed RNA polymerase [Nicotiana t | 0.984 | 0.784 | 0.507 | 0.0 | |
| 224099571 | 1133 | rna-dependent RNA polymerase [Populus tr | 0.995 | 0.781 | 0.499 | 0.0 | |
| 157152684 | 1117 | RNA-dependent RNA polymerase [Nicotiana | 0.984 | 0.784 | 0.510 | 0.0 | |
| 350537951 | 1114 | RNA-directed RNA polymerase [Solanum lyc | 0.983 | 0.785 | 0.512 | 0.0 | |
| 142942402 | 1115 | putative RNA-dependent RNA-polymerase [S | 0.983 | 0.784 | 0.511 | 0.0 | |
| 142942515 | 1065 | putative RNA-dependent RNA-polymerase [S | 0.982 | 0.820 | 0.507 | 0.0 | |
| 225424395 | 1109 | PREDICTED: RNA-dependent RNA polymerase | 0.983 | 0.788 | 0.496 | 0.0 |
| >gi|224111420|ref|XP_002315849.1| rna-dependent RNA polymerase [Populus trichocarpa] gi|222864889|gb|EEF02020.1| rna-dependent RNA polymerase [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/1049 (52%), Positives = 672/1049 (64%), Gaps = 173/1049 (16%)
Query: 1 MAKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK--GSRAHAIVEFTTVEAAD 58
MAK I LYGF ++ P +KEFLEE++GEGTV V V Q K GSR +AIVEFTT EAA
Sbjct: 1 MAKTISLYGFPTVEPPDDIKEFLEEYSGEGTVVAVHVAQPKSAGSRTNAIVEFTTSEAAQ 60
Query: 59 FIK--CLARERLSYGNSFLKASSAKRRTPHFAKRTPHYKLGGDLKLNFGCQISKDKFSVF 116
IK L E L YGNS+LKA R T K ++ L+FGCQ+SK+KFSV
Sbjct: 61 NIKLKSLDDEGLWYGNSYLKARDVYRDTVPMRKAFQTQYSMDNITLHFGCQVSKEKFSVL 120
Query: 117 WSQENVSVKLCSDLRKFGFFLSYESVDYKLELSNESIWQIELHRPSGH------------ 164
W+Q++VSVK +LRKF FFL++ S +YKLELS E+I+QIELHRP G
Sbjct: 121 WTQKDVSVKFGVELRKFHFFLTHLSKNYKLELSYENIFQIELHRPRGKTKKYLLVQMLGG 180
Query: 165 ------------------------------SVSIGQSSAICLELPSRALIPKALKDFFHY 194
S IGQSSA+CLELP + +P ++F Y
Sbjct: 181 PKIFKKDTSKLSNFKEATDDQWIRDVDFSPSYCIGQSSALCLELPPNSQLPNFQENFVCY 240
Query: 195 KESLVQFTLLPGFVFSCNSDLN-----------------------QDG------------ 219
KE F L G F C SDL Q G
Sbjct: 241 KEDEGHFILEKGSTFCCKSDLVPILSAAQVSELPYDIVFKVNSLVQHGCLPGPALDARFF 300
Query: 220 ---------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGG 264
+HALE L HL+ECCYDP WLREQY+K++++G+ PT PA+A+D G
Sbjct: 301 RLINPSKIRIAHAYIQHALEKLSHLKECCYDPARWLREQYQKYLTTGRLPTPPAIAVDDG 360
Query: 265 LIYVNKILVTPSKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQI 324
L+++ ++ +TP+K+YFCGP+++LSNRV+R YP +IDNFLR+SFVDEDL KL+S +SP+
Sbjct: 361 LVFLRRVQITPTKLYFCGPDVNLSNRVLRKYPGDIDNFLRVSFVDEDLDKLFSANISPRT 420
Query: 325 SSTNGERRTRIYERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIR 384
S R+T IY+R+LS RNGI IG KKFE L FS SQ RE++LWMFASRP LTAADIR
Sbjct: 421 FSAIEGRQTNIYQRILSVQRNGITIGSKKFEFLGFSQSQVRESSLWMFASRPGLTAADIR 480
Query: 385 ERMGDFREIKNVTKYAARLGQSFASSREALHVDSN----------------------IGK 422
E MGDFREIKNV KYAARLGQSF+SSRE+ ++D + IGK
Sbjct: 481 EWMGDFREIKNVAKYAARLGQSFSSSRESFNIDRHEIEIIPDIEVKSGGVNYVFSDGIGK 540
Query: 423 ISAELAETVAKKCGYAIYTPSAFQIRYGGY------------KVTLRNNMFKYKSESTSL 470
ISAELA+++A+K +TPSAFQIRYGGY K++LR +M KYKS +TSL
Sbjct: 541 ISAELADSIARKLRLRSFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRRSMSKYKSTNTSL 600
Query: 471 DILANSKYQ-----REGVARLRL----DNVFERKQREVVARLDAILTDSSKVQEALELMS 521
DIL SKY+ RE + L D VFERKQ+E +A+LDAILTD K QEALELM+
Sbjct: 601 DILDWSKYRACFLNREVIILLSTLGVKDQVFERKQKEAIAQLDAILTDPIKAQEALELMA 660
Query: 522 SAENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEK 581
EN VL +L CGYKP AEPFL+MM +TF A LL+LRT++RIF+ NG+AM GCLDE
Sbjct: 661 GGENARVLNGMLACGYKPGAEPFLAMMLETFRALKLLDLRTKSRIFVPNGRAMTGCLDET 720
Query: 582 GTLEYGQ------------------------------GLMVVAKKPCLHPGDMRVLRAVD 611
TLEYGQ G +VVAK PCLHPGD+++L+AVD
Sbjct: 721 RTLEYGQAFVQYSRARLSKSHDHFKGGKTDQHTLIVRGKIVVAKNPCLHPGDVQILKAVD 780
Query: 612 VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEK 671
VPALHHMVDC++FP KG+RPHTNECSGSD DG++YFVCWD D IPP +F P YT
Sbjct: 781 VPALHHMVDCIVFPQKGKRPHTNECSGSDLDGDVYFVCWDTDLIPPQKFPPMDYTAPQTT 840
Query: 672 ILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDF 731
IL DVTIE+V+EYFADY++NDSLGIIC AHVV+A SEPD A S +C +L +LSSI DF
Sbjct: 841 ILDHDVTIEEVQEYFADYLLNDSLGIICTAHVVFADSEPDMARSEKCIELAQLSSIAVDF 900
Query: 732 SKTGVAATIPSRLRVKIYPDFMEKQ--DKTWYESQHIVGNLYREVNGIAPSTTTIKSFAK 789
KTGV A IP LRVK YPDFMEK T Y SQ ++G L+R V IAP T+ ++ F K
Sbjct: 901 PKTGVPAKIPKELRVKEYPDFMEKAAYKHTTYVSQRVLGKLFRAVRDIAPDTSPVRPFTK 960
Query: 790 EGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMA 849
E A + YD DMEV+GFK+ + F Y++EYDNKLGN+MDYYGIKTEAE++ CIM M
Sbjct: 961 EAAKRSYDPDMEVDGFKDYINE--AFYYKSEYDNKLGNMMDYYGIKTEAEIIGGCIMRMG 1018
Query: 850 KSFDKKRDLEAISFSVRSLRKEARAWFNK 878
+SFDKK+DLE I+FSV SLRK+ARAWFN+
Sbjct: 1019 RSFDKKKDLEGINFSVSSLRKQARAWFNE 1047
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424397|ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224099569|ref|XP_002311535.1| rna-dependent RNA polymerase [Populus trichocarpa] gi|222851355|gb|EEE88902.1| rna-dependent RNA polymerase [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|224099571|ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa] gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|157152684|gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa] gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase [Nicotiana glutinosa] | Back alignment and taxonomy information |
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| >gi|350537951|ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum] gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|142942402|gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum] | Back alignment and taxonomy information |
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| >gi|142942515|gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum] | Back alignment and taxonomy information |
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| >gi|225424395|ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 890 | ||||||
| TAIR|locus:2006822 | 1107 | RDR1 "AT1G14790" [Arabidopsis | 0.321 | 0.258 | 0.618 | 2.6e-232 | |
| TAIR|locus:2114633 | 1196 | RDR6 "AT3G49500" [Arabidopsis | 0.332 | 0.247 | 0.422 | 1.9e-98 | |
| TAIR|locus:2136068 | 1133 | RDR2 "RNA-dependent RNA polyme | 0.344 | 0.270 | 0.381 | 1.7e-95 | |
| UNIPROTKB|Q8LHH9 | 1218 | SHL2 "Probable RNA-dependent R | 0.455 | 0.332 | 0.352 | 5.3e-78 | |
| UNIPROTKB|G4NJ50 | 1407 | MGG_02748 "RNA-dependent RNA p | 0.284 | 0.179 | 0.352 | 4.9e-64 | |
| POMBASE|SPAC6F12.09 | 1215 | rdp1 "RNA-directed RNA polymer | 0.314 | 0.230 | 0.320 | 1.7e-55 | |
| WB|WBGene00004510 | 1765 | rrf-3 [Caenorhabditis elegans | 0.295 | 0.149 | 0.296 | 3.6e-47 | |
| WB|WBGene00001214 | 1632 | ego-1 [Caenorhabditis elegans | 0.326 | 0.178 | 0.305 | 7.1e-43 | |
| WB|WBGene00004509 | 1579 | rrf-2 [Caenorhabditis elegans | 0.296 | 0.167 | 0.331 | 2.2e-41 | |
| WB|WBGene00004508 | 1601 | rrf-1 [Caenorhabditis elegans | 0.294 | 0.163 | 0.335 | 2.5e-41 |
| TAIR|locus:2006822 RDR1 "AT1G14790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 2.6e-232, Sum P(5) = 2.6e-232
Identities = 178/288 (61%), Positives = 213/288 (73%)
Query: 589 GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFV 648
G +VVAK PCLHPGD+RVL+AV+VPAL+HMVDCV+FP KG RPH NECSGSD DG+IYFV
Sbjct: 746 GPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFV 805
Query: 649 CWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIVNDSLGIICNAHVVYAYS 708
CWD + +PP +P YTP P +IL DVTIE+VEEYFA+YIVNDSLGII NAH +A
Sbjct: 806 CWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADK 865
Query: 709 EPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVG 768
EP KA S+ C +L K S DF KTGVAA IP L VK YPDFMEK DK YES++++G
Sbjct: 866 EPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIG 925
Query: 769 NLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNL 828
L+REV AP +IKSF + A + YD DMEV+GF+E + F + YD KLGNL
Sbjct: 926 KLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDE--AFYQKANYDFKLGNL 983
Query: 829 MDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVRSLRKEARAWF 876
MDYYGIKTEAE+LS IM M+KSF K+RD E+I +VR+LRKE + F
Sbjct: 984 MDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLF 1031
|
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| TAIR|locus:2114633 RDR6 "AT3G49500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2136068 RDR2 "RNA-dependent RNA polymerase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8LHH9 SHL2 "Probable RNA-dependent RNA polymerase SHL2" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G4NJ50 MGG_02748 "RNA-dependent RNA polymerase 1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
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| POMBASE|SPAC6F12.09 rdp1 "RNA-directed RNA polymerase Rdp1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| WB|WBGene00004510 rrf-3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| WB|WBGene00001214 ego-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| WB|WBGene00004509 rrf-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| WB|WBGene00004508 rrf-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0DXS3 | RDR1_ORYSJ | 2, ., 7, ., 7, ., 4, 8 | 0.5342 | 0.6842 | 0.8229 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 890 | |||
| pfam05183 | 508 | pfam05183, RdRP, RNA dependent RNA polymerase | 1e-109 |
| >gnl|CDD|218483 pfam05183, RdRP, RNA dependent RNA polymerase | Back alignment and domain information |
|---|
Score = 345 bits (886), Expect = e-109
Identities = 192/563 (34%), Positives = 265/563 (47%), Gaps = 129/563 (22%)
Query: 276 SKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRI 335
++V PE+ SNRV+R Y D FLR+ F DEDL S +
Sbjct: 1 TRVILELPELERSNRVLRKYG-AADRFLRVKFPDEDLSGAISN-------------DEDV 46
Query: 336 YERVLSTLRNGIVIGDKKFETLAFSNSQERENTLWMFASRPELTAADIRERMGDFREIKN 395
+RV L+NGI+IGD+ LAFSNSQ RE++ W FA LTA DIR +GDF I+
Sbjct: 47 GDRVKRVLKNGIIIGDR---YLAFSNSQLREHSAWFFAE-DRLTAEDIRNWLGDFENIEQ 102
Query: 396 VT-KYAARLGQSFASSREALHVDSN-------------------IGKISAELAETVAKKC 435
V KYAAR+GQ F+++R + +GKIS +LA +A +
Sbjct: 103 VPAKYAARIGQCFSTTRPTTGIRIRKIERIPDIPERNGYIFTDGVGKISRDLARKIADEL 162
Query: 436 GYAIYTPSAFQIRYGGYK-------------VTLRNNMFKYK----SESTSLDILANSKY 478
G PSA+QIR+GGYK + +R +M K+ + SL+I+ +SK
Sbjct: 163 GTLEEDPSAYQIRFGGYKGVLVVDPDLPGNEIHIRPSMLKFDLLGDAAVNSLEIIRSSKP 222
Query: 479 QREGVARLRL---------DNVFERKQREVVARLDAILTDSSKVQEALELMSSAENTNVL 529
+ R + D VF RE + L LTD + AL+L+ + N
Sbjct: 223 TPAYLNRQLITVLSTLGVPDEVFIELLREALKELAEALTDWDQ---ALDLLRKQADENDF 279
Query: 530 KELLNCGYKPDAEPFLSMMPQTFHASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ- 588
L + P +PFL + + L +L+ + RI + A+ G +DE G L+ G+
Sbjct: 280 TLTL--RFMPSEDPFLRKLLRALVKHTLKKLKEKLRIPVPKSAALFGVVDETGVLKEGEV 337
Query: 589 -----------------GLMVVAKKPCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERP 631
G ++VA+ PCLHPGD+RV+RAVDVP L H+ D V+FP+KG+RP
Sbjct: 338 FVQVSDGNDGGQYEYLEGDVLVARNPCLHPGDIRVVRAVDVPELRHLKDVVVFPSKGDRP 397
Query: 632 HTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIV 691
+E SG D DG+IYFVCWD P L
Sbjct: 398 LASELSGGDLDGDIYFVCWD----PDL--------------------------------- 420
Query: 692 NDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPD 751
LG I N+H+ A P+ C L KL S D+ KTG+ + LR K +PD
Sbjct: 421 ---LGRISNSHLAIAD--PEGVGDPECLRLAKLHSQAVDYPKTGLPVEMKRLLRPKEWPD 475
Query: 752 FMEKQDKTWYESQHIVGNLYREV 774
FMEK + Y+S I+G LYR V
Sbjct: 476 FMEKDEGKSYKSTRILGKLYRSV 498
|
This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates. Length = 508 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 890 | |||
| KOG0988 | 1145 | consensus RNA-directed RNA polymerase QDE-1 requir | 100.0 | |
| PF05183 | 579 | RdRP: RNA dependent RNA polymerase; InterPro: IPR0 | 100.0 | |
| PLN03134 | 144 | glycine-rich RNA-binding protein 4; Provisional | 99.5 | |
| PLN03213 | 759 | repressor of silencing 3; Provisional | 99.37 | |
| PLN03120 | 260 | nucleic acid binding protein; Provisional | 99.37 | |
| TIGR01661 | 352 | ELAV_HUD_SF ELAV/HuD family splicing factor. These | 99.34 | |
| PF00076 | 70 | RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or | 99.34 | |
| TIGR01661 | 352 | ELAV_HUD_SF ELAV/HuD family splicing factor. These | 99.26 | |
| PF14259 | 70 | RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or | 99.24 | |
| TIGR01659 | 346 | sex-lethal sex-lethal family splicing factor. This | 99.24 | |
| KOG0125 | 376 | consensus Ataxin 2-binding protein (RRM superfamil | 99.15 | |
| TIGR01645 | 612 | half-pint poly-U binding splicing factor, half-pin | 99.13 | |
| smart00362 | 72 | RRM_2 RNA recognition motif. | 99.13 | |
| KOG0149 | 247 | consensus Predicted RNA-binding protein SEB4 (RRM | 99.12 | |
| PLN03121 | 243 | nucleic acid binding protein; Provisional | 99.12 | |
| TIGR01645 | 612 | half-pint poly-U binding splicing factor, half-pin | 99.1 | |
| TIGR01649 | 481 | hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor | 99.1 | |
| smart00360 | 71 | RRM RNA recognition motif. | 99.07 | |
| TIGR01659 | 346 | sex-lethal sex-lethal family splicing factor. This | 99.07 | |
| TIGR01628 | 562 | PABP-1234 polyadenylate binding protein, human typ | 99.04 | |
| TIGR01622 | 457 | SF-CC1 splicing factor, CC1-like family. A homolog | 99.01 | |
| TIGR01642 | 509 | U2AF_lg U2 snRNP auxilliary factor, large subunit, | 98.99 | |
| COG0724 | 306 | RNA-binding proteins (RRM domain) [General functio | 98.98 | |
| cd00590 | 74 | RRM RRM (RNA recognition motif), also known as RBD | 98.98 | |
| TIGR01628 | 562 | PABP-1234 polyadenylate binding protein, human typ | 98.96 | |
| TIGR01649 | 481 | hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor | 98.96 | |
| TIGR01622 | 457 | SF-CC1 splicing factor, CC1-like family. A homolog | 98.95 | |
| TIGR01648 | 578 | hnRNP-R-Q heterogeneous nuclear ribonucleoprotein | 98.95 | |
| KOG0108 | 435 | consensus mRNA cleavage and polyadenylation factor | 98.93 | |
| KOG0107 | 195 | consensus Alternative splicing factor SRp20/9G8 (R | 98.86 | |
| TIGR01648 | 578 | hnRNP-R-Q heterogeneous nuclear ribonucleoprotein | 98.84 | |
| smart00361 | 70 | RRM_1 RNA recognition motif. | 98.77 | |
| KOG0122 | 270 | consensus Translation initiation factor 3, subunit | 98.71 | |
| KOG4207 | 256 | consensus Predicted splicing factor, SR protein su | 98.71 | |
| KOG0145 | 360 | consensus RNA-binding protein ELAV/HU (RRM superfa | 98.71 | |
| TIGR01642 | 509 | U2AF_lg U2 snRNP auxilliary factor, large subunit, | 98.7 | |
| KOG0131 | 203 | consensus Splicing factor 3b, subunit 4 [RNA proce | 98.69 | |
| KOG0111 | 298 | consensus Cyclophilin-type peptidyl-prolyl cis-tra | 98.68 | |
| KOG0145 | 360 | consensus RNA-binding protein ELAV/HU (RRM superfa | 98.61 | |
| KOG0105 | 241 | consensus Alternative splicing factor ASF/SF2 (RRM | 98.6 | |
| PF13893 | 56 | RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or | 98.52 | |
| KOG0117 | 506 | consensus Heterogeneous nuclear ribonucleoprotein | 98.5 | |
| KOG0127 | 678 | consensus Nucleolar protein fibrillarin NOP77 (RRM | 98.48 | |
| KOG0148 | 321 | consensus Apoptosis-promoting RNA-binding protein | 98.48 | |
| KOG0114 | 124 | consensus Predicted RNA-binding protein (RRM super | 98.47 | |
| KOG0123 | 369 | consensus Polyadenylate-binding protein (RRM super | 98.43 | |
| KOG0127 | 678 | consensus Nucleolar protein fibrillarin NOP77 (RRM | 98.41 | |
| KOG0126 | 219 | consensus Predicted RNA-binding protein (RRM super | 98.39 | |
| KOG0113 | 335 | consensus U1 small nuclear ribonucleoprotein (RRM | 98.38 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 98.38 | |
| KOG0121 | 153 | consensus Nuclear cap-binding protein complex, sub | 98.37 | |
| KOG0148 | 321 | consensus Apoptosis-promoting RNA-binding protein | 98.32 | |
| KOG4212 | 608 | consensus RNA-binding protein hnRNP-M [RNA process | 98.28 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 98.27 | |
| KOG0124 | 544 | consensus Polypyrimidine tract-binding protein PUF | 98.21 | |
| KOG0110 | 725 | consensus RNA-binding protein (RRM superfamily) [G | 98.19 | |
| KOG0117 | 506 | consensus Heterogeneous nuclear ribonucleoprotein | 98.12 | |
| KOG4205 | 311 | consensus RNA-binding protein musashi/mRNA cleavag | 98.11 | |
| KOG0130 | 170 | consensus RNA-binding protein RBM8/Tsunagi (RRM su | 98.11 | |
| KOG0147 | 549 | consensus Transcriptional coactivator CAPER (RRM s | 98.1 | |
| KOG4205 | 311 | consensus RNA-binding protein musashi/mRNA cleavag | 98.09 | |
| KOG0146 | 371 | consensus RNA-binding protein ETR-3 (RRM superfami | 98.06 | |
| KOG4208 | 214 | consensus Nucleolar RNA-binding protein NIFK [Gene | 97.98 | |
| KOG4661 | 940 | consensus Hsp27-ERE-TATA-binding protein/Scaffold | 97.95 | |
| KOG4206 | 221 | consensus Spliceosomal protein snRNP-U1A/U2B [RNA | 97.9 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 97.89 | |
| KOG0123 | 369 | consensus Polyadenylate-binding protein (RRM super | 97.89 | |
| KOG4211 | 510 | consensus Splicing factor hnRNP-F and related RNA- | 97.87 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 97.86 | |
| KOG0153 | 377 | consensus Predicted RNA-binding protein (RRM super | 97.85 | |
| KOG0124 | 544 | consensus Polypyrimidine tract-binding protein PUF | 97.84 | |
| KOG0132 | 894 | consensus RNA polymerase II C-terminal domain-bind | 97.83 | |
| KOG0116 | 419 | consensus RasGAP SH3 binding protein rasputin, con | 97.75 | |
| KOG4454 | 267 | consensus RNA binding protein (RRM superfamily) [G | 97.67 | |
| KOG0533 | 243 | consensus RRM motif-containing protein [RNA proces | 97.52 | |
| KOG0110 | 725 | consensus RNA-binding protein (RRM superfamily) [G | 97.5 | |
| KOG4212 | 608 | consensus RNA-binding protein hnRNP-M [RNA process | 97.35 | |
| KOG0106 | 216 | consensus Alternative splicing factor SRp55/B52/SR | 97.26 | |
| KOG0131 | 203 | consensus Splicing factor 3b, subunit 4 [RNA proce | 97.18 | |
| KOG4209 | 231 | consensus Splicing factor RNPS1, SR protein superf | 97.14 | |
| KOG4211 | 510 | consensus Splicing factor hnRNP-F and related RNA- | 96.87 | |
| KOG0146 | 371 | consensus RNA-binding protein ETR-3 (RRM superfami | 96.86 | |
| KOG0151 | 877 | consensus Predicted splicing regulator, contains R | 96.75 | |
| KOG1457 | 284 | consensus RNA binding protein (contains RRM repeat | 96.66 | |
| KOG4660 | 549 | consensus Protein Mei2, essential for commitment t | 96.55 | |
| KOG0129 | 520 | consensus Predicted RNA-binding protein (RRM super | 96.12 | |
| KOG0415 | 479 | consensus Predicted peptidyl prolyl cis-trans isom | 96.08 | |
| KOG0120 | 500 | consensus Splicing factor U2AF, large subunit (RRM | 96.0 | |
| KOG1548 | 382 | consensus Transcription elongation factor TAT-SF1 | 95.84 | |
| KOG0147 | 549 | consensus Transcriptional coactivator CAPER (RRM s | 95.73 | |
| KOG4210 | 285 | consensus Nuclear localization sequence binding pr | 95.67 | |
| PF04059 | 97 | RRM_2: RNA recognition motif 2; InterPro: IPR00720 | 95.51 | |
| KOG1365 | 508 | consensus RNA-binding protein Fusilli, contains RR | 95.39 | |
| KOG1365 | 508 | consensus RNA-binding protein Fusilli, contains RR | 95.3 | |
| KOG1190 | 492 | consensus Polypyrimidine tract-binding protein [RN | 95.15 | |
| KOG0226 | 290 | consensus RNA-binding proteins [General function p | 94.55 | |
| PF11608 | 90 | Limkain-b1: Limkain b1; InterPro: IPR024582 This e | 94.35 | |
| KOG1995 | 351 | consensus Conserved Zn-finger protein [General fun | 94.14 | |
| PF08777 | 105 | RRM_3: RNA binding motif; InterPro: IPR014886 This | 94.02 | |
| KOG0106 | 216 | consensus Alternative splicing factor SRp55/B52/SR | 94.02 | |
| KOG4206 | 221 | consensus Spliceosomal protein snRNP-U1A/U2B [RNA | 92.45 | |
| KOG1190 | 492 | consensus Polypyrimidine tract-binding protein [RN | 92.11 | |
| PF14605 | 53 | Nup35_RRM_2: Nup53/35/40-type RNA recognition moti | 90.09 | |
| KOG2202 | 260 | consensus U2 snRNP splicing factor, small subunit, | 90.06 | |
| KOG4307 | 944 | consensus RNA binding protein RBM12/SWAN [General | 89.77 | |
| KOG1548 | 382 | consensus Transcription elongation factor TAT-SF1 | 89.4 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 89.23 | |
| KOG1457 | 284 | consensus RNA binding protein (contains RRM repeat | 88.81 | |
| PF05172 | 100 | Nup35_RRM: Nup53/35/40-type RNA recognition motif; | 88.31 | |
| KOG3152 | 278 | consensus TBP-binding protein, activator of basal | 87.84 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 87.19 | |
| KOG4307 | 944 | consensus RNA binding protein RBM12/SWAN [General | 86.41 | |
| KOG1855 | 484 | consensus Predicted RNA-binding protein [General f | 85.74 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 83.65 | |
| KOG0120 | 500 | consensus Splicing factor U2AF, large subunit (RRM | 83.27 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 80.44 | |
| KOG1456 | 494 | consensus Heterogeneous nuclear ribonucleoprotein | 80.09 |
| >KOG0988 consensus RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-162 Score=1424.44 Aligned_cols=858 Identities=32% Similarity=0.479 Sum_probs=728.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCce-eEE
Q 035741 2 AKMIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSF-LKA 77 (890)
Q Consensus 2 ~kti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~-L~v 77 (890)
..++-++++|.+.++.++.+|.+..+|.++|+..++-+++ ..+-|+.++|++.+.--.++........|+... ++.
T Consensus 10 ~~~~~~~~f~e~~~~~~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~l~~~~~~~~~a~v~f~~~~~~~~ 89 (1145)
T KOG0988|consen 10 VEEQDCNGFPESNSAVELGDFLELLIGAITVYLLKMNTTKPYRPNRVYHGSDFTSIALDCSGIETPLAKVYFKHNQGLNP 89 (1145)
T ss_pred eeeeeccCcccchhHHHhhhHHHHHhcchHHHHHhcCCCCCCCCccccccccccccccccccchhhHHHHhhccCCCCCc
Confidence 4678899999999999999999999999999999999998 388999999988765555333322235555555 888
Q ss_pred ecCCC--CCCCCCCCCccccccCCcEEEEeec---cccceeEEeecc---cCceeEeccCceeEEEEeeecCe-eeEEEe
Q 035741 78 SSAKR--RTPHFAKRTPHYKLGGDLKLNFGCQ---ISKDKFSVFWSQ---ENVSVKLCSDLRKFGFFLSYESV-DYKLEL 148 (890)
Q Consensus 78 ~ea~~--di~p~rp~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 148 (890)
.|+.. ++++ .+..+.+.+. .+++.++|. +..-.|..||+| +.|.|+..+.+|.+.++++.... |+.-++
T Consensus 90 ~e~~~~~~~l~-~~a~~~~~l~-~i~~~~~F~~~~~~t~~~~~~~~~~v~~~v~V~~~~~~~~~~~p~~~~~~~~v~f~~ 167 (1145)
T KOG0988|consen 90 WEVETSRRILS-SLAVIRESLN-QIVLEKVFDKPDGITKTFDCLESYKVNDQVTVRGSPVRRIVESPVVEYCKLCVPFEH 167 (1145)
T ss_pred cchhhhhhhcc-ccccchHHHh-hHHHhhccCcccceeeeecceEEEeecceEEEeccceeeeeecccccccccccchhh
Confidence 88877 8889 8666677777 777777664 445689999999 99999999999999999866544 777777
Q ss_pred cchhhhh---hhccCCC------CC-----------------------------------------------ccccccee
Q 035741 149 SNESIWQ---IELHRPS------GH-----------------------------------------------SVSIGQSS 172 (890)
Q Consensus 149 ~~~~~~~---~~~~~~~------~~-----------------------------------------------~~~~~~~~ 172 (890)
++..+.+ +.++-|. .. ..+||+++
T Consensus 168 ~~~~~i~~~~~D~~~~s~~~~~~~~~~~~~G~~k~~~~~~~p~~~~~~~~~~Ef~k~~~~~~~~i~~~~~~~~~~v~~et 247 (1145)
T KOG0988|consen 168 SCRVLIETVSLDLDKPSIIRYPKSRRYLDNGGSKYFRFAFSPLLLALGDSELEFKKDFLADLLYIRTTDLRSRTGVGIET 247 (1145)
T ss_pred cchhheeeEEeccCcchhccCcchhhhhhcCccceeecccccHHHhhccceeeeecccccccceeeecceecccccccee
Confidence 7766553 2222221 00 55799999
Q ss_pred eEEEecCC--CCccchhhhhcccccccc-ceeEeecCCcccc-cchhh------------------------HHH-----
Q 035741 173 AICLELPS--RALIPKALKDFFHYKESL-VQFTLLPGFVFSC-NSDLN------------------------QDG----- 219 (890)
Q Consensus 173 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~------------------------~~~----- 219 (890)
+.|.|++. |..+|.+..+ ..+.|.. ..+....|..|++ +.+++ |.|
T Consensus 248 a~~~eI~~~i~~~lP~~r~~-~~~~~~~~~s~~ir~~~~~~~~~~~~~~l~~~~~~git~~~e~l~~r~slv~dq~~~~~ 326 (1145)
T KOG0988|consen 248 ASCDEIRVPIWKDLPYNRYN-GSTAEEFRLSVWIRLGSKYDVSSAQLVPLNDERDFGITHLYECLVSRGSLVKDQVLLEE 326 (1145)
T ss_pred eccceecchhhccCCccccc-ccchhhhhhhhheecccccccccceeeeccccccccceeehhhhhcccchhhhhHHhhh
Confidence 99999999 5666665543 1122222 2345556665542 22222 222
Q ss_pred ---------------------HHHHHHHHhcccccccchhHHHHHHhhhhcCCCCCCCCccccCCCcEEEEEEEEccCce
Q 035741 220 ---------------------KHALEMLFHLRECCYDPVSWLREQYRKHVSSGQFPTSPAVALDGGLIYVNKILVTPSKV 278 (890)
Q Consensus 220 ---------------------~~~le~~~~~~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~v~vTPtri 278 (890)
.+.||+|.++..+||||+++.+..+++..+|..+ .+..++++|++.|+||+|||||+
T Consensus 327 ~~~~~f~~l~~~~~~~d~~v~~a~LekL~~~~~~cfd~~~~~k~i~~~~~~ng~~--~~~~~~~~g~~~vrk~v~TPtrv 404 (1145)
T KOG0988|consen 327 AHLLEFLGLLRHKVLGDDNVLEAKLEKLLKLSTKCFDPYCQYKKIAKLNPSNGKL--VTTKEIMEGLRRVRKVVFTPTRV 404 (1145)
T ss_pred hHHHHHHHHHhhhhccchhHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhcccCcc--ccchhhhhcceeEEEEEEcCcee
Confidence 7889999999999999999999988876666653 34567889999999999999999
Q ss_pred eecCCeecccCceeccCCCCCCcEEEEEEEcCCCCccCCcccCCCccCCCcchhhhHHHHHHHHhhcCeEecceEeEEEe
Q 035741 279 YFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNGIVIGDKKFETLA 358 (890)
Q Consensus 279 ~l~~P~~e~sNRVlR~f~~~~drFLRV~F~DE~~~~l~~~~~~p~~~~~~~~~~~~i~~rv~~~L~~Gi~I~gR~y~FLa 358 (890)
|+.+||++++|||+|+|..+++|||||+|+||+++ +..+.+++ ..++.+|.||..+|++||.||+|.|+|||
T Consensus 405 ~~~~PE~~~gNRVlR~f~~~~t~~lRvtF~De~~~-~~ir~~S~-------~~~t~l~~rv~~~L~~Gi~v~~r~y~FL~ 476 (1145)
T KOG0988|consen 405 YLLAPEVEMGNRVLRKFDKDSTRFLRVTFRDEDNK-LKIRTLST-------GSRTKLDMRVNSYLTDGISVANRRYEFLA 476 (1145)
T ss_pred EecCchhhhcchhheeccccCceEEEEEEEccccc-cccccCCc-------chhhHHHHHHHHHHhcccEEccceeEEEE
Confidence 99999999999999999999999999999999986 44333321 12689999999999999999999999999
Q ss_pred eccCccccCeEEEEecCCCCCHHHHHHHhcCccCCCCHHHHHHHhccccccccCceec-c--------------------
Q 035741 359 FSNSQERENTLWMFASRPELTAADIRERMGDFREIKNVTKYAARLGQSFASSREALHV-D-------------------- 417 (890)
Q Consensus 359 ~SnSqLRe~s~wFfa~~~~~t~~~Ir~wmG~F~~i~~vaK~aARlgq~FSsT~~tv~v-~-------------------- 417 (890)
|||||||+||+||++.....++++||.|||+|++|.|++|||||||||||+|++|..+ +
T Consensus 477 ~s~sQlRdngy~m~~~s~~~~i~~iR~wmG~F~~i~nv~K~aARmGqCFs~Sr~T~~~~~~~~~~~~~DI~~g~~g~~y~ 556 (1145)
T KOG0988|consen 477 FSNSQLRDNGYFMARFSDKTKIEDIREWMGDFRDIDNVPKLAARMGQCFSQSRGTGYVLERLDRMCPPDIEGGKRGNNYC 556 (1145)
T ss_pred ecccccccCceEEeecCCCccHHHHHHHhcchhhccCHHHHHhhcCcceeccccccccccccccccCCcccccccCCcee
Confidence 9999999999888887777999999999999999999999999999999999999655 1
Q ss_pred --cceeeccHHHHHHHHHHcCCCCCCCceEEEeecCee--EEeC----------CCccCCCCCCCceeEeecCCcccccc
Q 035741 418 --SNIGKISAELAETVAKKCGYAIYTPSAFQIRYGGYK--VTLR----------NNMFKYKSESTSLDILANSKYQREGV 483 (890)
Q Consensus 418 --~GvG~IS~~lA~~I~~~l~l~~~~PSAfQiR~gG~K--I~lR----------pSm~KF~s~~~~LeIv~~S~~~p~~L 483 (890)
+|||+||.++|++|++++++...+||||||||||+| |.++ .||.||.|.+..++|+.|++|+||+|
T Consensus 557 FSDGvG~iS~~~a~~vsq~~~~~~~vPsaFQiR~~G~KGVvav~Ps~~~~~~~~~~~~~s~S~n~~~~v~~~~~f~~~~l 636 (1145)
T KOG0988|consen 557 FSDGVGMISLQFAREVSQKRKFGKAVPSAFQIRYGGYKGVVAVDPSMDKVLKLRDSMNKSQSFNSLLEVTPSSKFQPAFL 636 (1145)
T ss_pred ecCCcccccHHHHHHHHHHHcccccCChheeeeccCCcceEEeCccHhhhhhhhhhhhhhhhhcceeeeeeccCCccccc
Confidence 199999999999999999998789999999999999 5554 55566778889999999999999999
Q ss_pred cc--------c-CChHHHHHHHHHHHHHH--HHHhcCHHHHHHHHHhcCCCchHHHHHHHHHCCCCCCCchHHHHHHHHH
Q 035741 484 AR--------L-RLDNVFERKQREVVARL--DAILTDSSKVQEALELMSSAENTNVLKELLNCGYKPDAEPFLSMMPQTF 552 (890)
Q Consensus 484 NR--------L-V~d~vF~~lq~~~l~~l--~~~l~d~~~a~~~L~~~~~~~~~~~l~~ll~~Gf~~~~ePfl~~lL~~~ 552 (890)
|| | |++++|+++|+..++.- ...+..+..+..+|......+..+++..++..++.++.|||+++||...
T Consensus 637 nr~lI~Lls~~gv~n~~F~~il~~vle~~r~~~n~~e~~~~~~~l~~~~~m~~en~a~~~l~~~~~~D~EPflr~mL~~~ 716 (1145)
T KOG0988|consen 637 NRQLITLLSYLGVLNKPFINILDQVLEKQRRITNRIEELLDRAALNYGEQMDDENIAAMILKGFPRIDSEPFLRSMLSSL 716 (1145)
T ss_pred cHHHHHHHHhcCccchHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhhhhccchHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 99 2 99999999999999843 3344455556666654433445565555666666688899999999999
Q ss_pred HHHHHHHHhhhcceeecCcceEEEeecCCCCCCCCc---------------------ceEEEeeCCCCCCCceEEEEEec
Q 035741 553 HASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDMRVLRAVD 611 (890)
Q Consensus 553 ~~~~L~~Lk~K~RI~Vp~s~~l~GV~DetG~L~~GE---------------------G~VlV~RnPclHPGDIr~v~AVd 611 (890)
+++.++.+|+|.|||||.||+||||+||||+||||| |+|||||||||||||||+++||+
T Consensus 717 ~k~~~~~~kek~ripv~~Gr~lmGvvDETG~L~ygQVfVq~t~~~~~~~~~~~~vitG~VlvtKNPcLhpGDVRVl~AV~ 796 (1145)
T KOG0988|consen 717 LKFTLQLLKEKIRIPVDLGRSLMGVVDETGILKYGQVFVQYTKTIRNSDSGRKEVITGKVLVTKNPCLHPGDVRVLKAVY 796 (1145)
T ss_pred HHHHHHHHHhcccccCcCCceeEeeeccccccccCeEEEEEcccccccccCCceEEEeeEEEecCCCCCCCceEEEEeec
Confidence 999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCeEEcCCCCCCCCCCcccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHhhc
Q 035741 612 VPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPEKILARDVTIEDVEEYFADYIV 691 (890)
Q Consensus 612 ~P~L~hL~dVIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lip~~~~~P~~Y~~~~~~~l~~~vt~~di~~ffv~ym~ 691 (890)
+|+|+||+|||||||||+||||+||||||||||+|||||||+|+|+.+++||+|++++++.+.+.++.++|.+||++||+
T Consensus 797 vp~L~h~~dvVvFPQkGpRphpdE~aGsDLDGDeYfViWDqkLL~~~~~epmd~~~~~sk~~~~~~~~~~m~effv~yL~ 876 (1145)
T KOG0988|consen 797 VPALEHMVDVVVFPQKGPRPHPDEMAGSDLDGDEYFVIWDQKLLPPRNEEPMDSSSEKSKILDGRVPLDEMSEFFVEYLK 876 (1145)
T ss_pred cHHHHhhcCEEEcCCCCCCCCccccccCCCCCceEEEEeChhhccCcCCCccccCccccccccCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHhccCCCCCCCCchHHHHHHHhhccccCCCCCccccCccccCCCCCCCcCCCCCCccccCCccchhh
Q 035741 692 NDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPSRLRVKIYPDFMEKQDKTWYESQHIVGNLY 771 (890)
Q Consensus 692 ~d~LG~is~aHl~~aD~~~~G~~~~~Cl~LA~L~S~AVD~~KTG~~v~ip~~L~~~~~PdFMek~~~~~Y~S~kiLG~LY 771 (890)
+|+||+|+|||+++||+ .|++++.|+.||++||+||||||||..+.+|..++|++|||||++.++|+|.|++++||||
T Consensus 877 ~DslG~isnAhl~~aD~--~G~~~~~Cl~LA~k~~~AVDF~KsG~d~~~~~~ek~e~~PDfm~~~d~p~Y~S~~l~GkLf 954 (1145)
T KOG0988|consen 877 EDSLGLISNAHLANADV--YGLFSDVCLELAKKHSQAVDFPKSGADESMPEKEKPERYPDFMEKTDKPTYYSERLCGKLF 954 (1145)
T ss_pred HHHHHHHhhccccchhh--cchhhHHHHHHHHhhcccccccccCCcccccchhchhhcchhhhCCCCceeecchhhhHHH
Confidence 99999999999999999 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCccccccccccccccccCCCccccChhhhhchhhHHHHHHHHHHHHHHHHHhcCCCCcceEEEE--Eeeccc
Q 035741 772 REVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFKEVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSR--CIMEMA 849 (890)
Q Consensus 772 r~v~~~~~~~~~~~~~~~~~~~~~~D~~l~v~g~~~yl~~~~A~~~k~~Y~~~l~~lm~~y~i~tE~Ev~sG--~i~~~~ 849 (890)
|+++.+............... ..||++++++||++|+ +.|+++++.|+.+|++||++|||.+|+||+|| .+..|+
T Consensus 955 R~~~aid~~~~~~e~~~~~~~-i~yD~~l~v~gFe~ym--e~a~~~~~~y~~qL~slm~~ygi~~E~eI~sG~~~~ddms 1031 (1145)
T KOG0988|consen 955 REAKAIDAPLKGSEERSEQVE-VEYDEDLEVDGFEHYM--ERAKKQVASYNGQLRSLMDFYGISTEGEIFSGILDQDDMS 1031 (1145)
T ss_pred HHHHhhcchhhcCccccCccc-ccCCcccCcCCcHHHH--HHHHHHHhhhhhHHHHHHHHhCccchhhhhccCccccchh
Confidence 988776543222222222233 6899999999999999 99999999999999999999999999999999 666788
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhc
Q 035741 850 KSFDKKRDLEAISFSVRSLRKEARAWFN 877 (890)
Q Consensus 850 ~~~~~~~~~~~i~~~~~~l~~~~r~~f~ 877 (890)
++.+++..-+++...+..||+.|-+.|.
T Consensus 1032 ~~~t~~~~e~~~~~l~~~~r~~~~qef~ 1059 (1145)
T KOG0988|consen 1032 FYNTERMIELKLERLVLKLREKFFQEFG 1059 (1145)
T ss_pred hhcccccchhhhHHHHHHHHHHHHHHhh
Confidence 8888887777778888888877777773
|
|
| >PF05183 RdRP: RNA dependent RNA polymerase; InterPro: IPR007855 This entry represents various eukaryotic RNA-dependent RNA polymerases (RDRP; 2 | Back alignment and domain information |
|---|
| >PLN03134 glycine-rich RNA-binding protein 4; Provisional | Back alignment and domain information |
|---|
| >PLN03213 repressor of silencing 3; Provisional | Back alignment and domain information |
|---|
| >PLN03120 nucleic acid binding protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor | Back alignment and domain information |
|---|
| >PF00076 RRM_1: RNA recognition motif | Back alignment and domain information |
|---|
| >TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor | Back alignment and domain information |
|---|
| >PF14259 RRM_6: RNA recognition motif (a | Back alignment and domain information |
|---|
| >TIGR01659 sex-lethal sex-lethal family splicing factor | Back alignment and domain information |
|---|
| >KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01645 half-pint poly-U binding splicing factor, half-pint family | Back alignment and domain information |
|---|
| >smart00362 RRM_2 RNA recognition motif | Back alignment and domain information |
|---|
| >KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03121 nucleic acid binding protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01645 half-pint poly-U binding splicing factor, half-pint family | Back alignment and domain information |
|---|
| >TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
| >smart00360 RRM RNA recognition motif | Back alignment and domain information |
|---|
| >TIGR01659 sex-lethal sex-lethal family splicing factor | Back alignment and domain information |
|---|
| >TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
| >TIGR01622 SF-CC1 splicing factor, CC1-like family | Back alignment and domain information |
|---|
| >TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
| >COG0724 RNA-binding proteins (RRM domain) [General function prediction only] | Back alignment and domain information |
|---|
| >cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability | Back alignment and domain information |
|---|
| >TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
| >TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
| >TIGR01622 SF-CC1 splicing factor, CC1-like family | Back alignment and domain information |
|---|
| >TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family | Back alignment and domain information |
|---|
| >KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family | Back alignment and domain information |
|---|
| >smart00361 RRM_1 RNA recognition motif | Back alignment and domain information |
|---|
| >KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
| >KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13893 RRM_5: RNA recognition motif | Back alignment and domain information |
|---|
| >KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
| >KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription] | Back alignment and domain information |
|---|
| >KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] | Back alignment and domain information |
|---|
| >KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
| >KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] | Back alignment and domain information |
|---|
| >KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0533 consensus RRM motif-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription] | Back alignment and domain information |
|---|
| >KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription] | Back alignment and domain information |
|---|
| >KOG4210 consensus Nuclear localization sequence binding protein [Transcription] | Back alignment and domain information |
|---|
| >PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2 | Back alignment and domain information |
|---|
| >KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
| >KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
| >KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0226 consensus RNA-binding proteins [General function prediction only] | Back alignment and domain information |
|---|
| >PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes | Back alignment and domain information |
|---|
| >KOG1995 consensus Conserved Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation | Back alignment and domain information |
|---|
| >KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif | Back alignment and domain information |
|---|
| >KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription] | Back alignment and domain information |
|---|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only] | Back alignment and domain information |
|---|
| >PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT [] | Back alignment and domain information |
|---|
| >KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription] | Back alignment and domain information |
|---|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1855 consensus Predicted RNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
| >KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 890 | ||||
| 2j7n_A | 1022 | Structure Of The Rnai Polymerase From Neurospora Cr | 5e-10 |
| >pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa Length = 1022 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2j7n_A RNA-dependent RNA polymerase; RNAI response, RNA-directed RNA polymerase, hydrolase; 2.30A {Neurospora crassa} PDB: 2j7o_A Length = 1022 | Back alignment and structure |
|---|
Score = 363 bits (933), Expect = e-111
Identities = 115/803 (14%), Positives = 232/803 (28%), Gaps = 174/803 (21%)
Query: 254 PTSPAVALDGGLIYVNKILVTPS--KVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDED 311
AV L L Y T V R+ R + D F +
Sbjct: 107 SKGSAVVLSAVLDYNPDNSPTAPLYLVKLKPLMFEQGCRLTRRFGP--DRFFEILIPSPT 164
Query: 312 LGKLYSTVLSPQISSTNGERRTRIYE----------RVLSTLRNGIVIGDKKFETLAFSN 361
+ + + E + R G ++F+ A
Sbjct: 165 STSPSVPPVVSKQPAAVEEVIQWLTMGQHSLVGRQWRAFFAKDAGYRKPLREFQLRAEDP 224
Query: 362 SQERENTLWMFA------------------------SRPELTAADIRERMGDFRE--IKN 395
+ + FA R E + + + + +
Sbjct: 225 KPIIKERVHFFAETGITFRPDVFKTRSVVPAEEPVEQRTEFKVSQMLDWLLQLDNNTWQP 284
Query: 396 VTKYAARLGQSFASSREALHVD----------------------SNIGKISAELAETVAK 433
K +R+ + + + ++ +G++S +A+ +
Sbjct: 285 HLKLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRD 344
Query: 434 KCGYAIYTPSAFQIRYGGYKVTL---------------RNNMFKYKS-----ESTSLDIL 473
G PSA Q R+G K + K++ +L++
Sbjct: 345 VLGLG-DVPSAVQGRFGSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVR 403
Query: 474 ANSKY-------------------QREGVARLRLDNVFERKQREVVARLDAILTDSSKVQ 514
+ + + + + D + QR+ + A+ Q
Sbjct: 404 SVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLINDLQRQFSEQKHALNRPVEFRQ 463
Query: 515 EALELMSSA-----------------ENTNVLKELLNCGYKPDAEPFLSMMPQTFHASNL 557
E SS L L+N G+ P + +L +
Sbjct: 464 WVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYLQDIAWDLQKRKC 523
Query: 558 LELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------------------GLMVVAKK 596
L+++ I + + D G LE + ++VA+
Sbjct: 524 DTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFSSKFRDEEESFTLLSDCDVLVARS 583
Query: 597 PCLHPGDMRVLRAVDVPALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIP 656
P P D++ +RAV P LH + D ++F KG+ P + SG D DG++ +VCWD + +
Sbjct: 584 PAHFPSDIQRVRAVFKPELHSLKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVD 643
Query: 657 PLQFQPTAYTPAPEKILARDVTI--------------------EDVEEYFADYIVNDSLG 696
P + L +D T + +++ F + + LG
Sbjct: 644 GFVNAEMPLEPDLSRYLKKDKTTFKQLMASHGTGSAAKEQTTYDMIQKSFHFALQPNFLG 703
Query: 697 IICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATIPS--RLRVKIYPDFME 754
+ N Y + + L L + D SK G+ S +LR ++ +
Sbjct: 704 MCTNYKERLCYIN-NSVSNKPAIILSSLVGNLVDQSKQGIVFNEASWAQLRRELLGGALS 762
Query: 755 KQDKTW--------YESQHIVGNLYREVNGIAPSTTTIKSFAKEGAMQFYDTDMEVNGFK 806
D + E HI+ L + A +++F D
Sbjct: 763 LPDPMYKSDSWLGRGEPTHIIDYLKFSIARPA-IDKELEAFHNAMKAAKDTEDGAHFWDP 821
Query: 807 EVAMQFDGFKYRTEYDNKLGNLMDYYGIKTEAEMLSRCIMEMAKSFDKKRDLEAISFSVR 866
++A + FK ++ L +K + + + K+ + + + V
Sbjct: 822 DLASYYTFFKEISDKSRSSALLFT--TLKNRIGEVEKEYGRLVKNKEMRDSKDPYPVRVN 879
Query: 867 SLRKEARAWFNKKKNDSDSSHKD 889
+ ++ A + + S +++
Sbjct: 880 QVYEKWCAITPEAMDKSGANYDS 902
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 890 | |||
| 2j7n_A | 1022 | RNA-dependent RNA polymerase; RNAI response, RNA-d | 100.0 | |
| 4fxv_A | 99 | ELAV-like protein 1; RNA recognition motif, putati | 99.67 | |
| 2lxi_A | 91 | RNA-binding protein 10; NMR {Homo sapiens} | 99.65 | |
| 4f25_A | 115 | Polyadenylate-binding protein 1; RRM fold, transla | 99.63 | |
| 3p5t_L | 90 | Cleavage and polyadenylation specificity factor S; | 99.63 | |
| 2dgx_A | 96 | KIAA0430 protein; RRM domain, structural genomics, | 99.6 | |
| 3s8s_A | 110 | Histone-lysine N-methyltransferase SETD1A; chromat | 99.59 | |
| 3md1_A | 83 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.58 | |
| 1sjq_A | 105 | Polypyrimidine tract-binding protein 1; babbab mot | 99.58 | |
| 2lkz_A | 95 | RNA-binding protein 5; RRM; NMR {Homo sapiens} | 99.58 | |
| 1s79_A | 103 | Lupus LA protein; RRM, alpha/beta, RNA binding pro | 99.58 | |
| 3bs9_A | 87 | Nucleolysin TIA-1 isoform P40; RNA recognition mot | 99.57 | |
| 2x1f_A | 96 | MRNA 3'-END-processing protein RNA15; transcriptio | 99.57 | |
| 2wbr_A | 89 | GW182, gawky, LD47780P; DNA-binding protein, RRM, | 99.57 | |
| 1whw_A | 99 | Hypothetical protein riken cDNA 1200009A02; RNA re | 99.57 | |
| 3r27_A | 100 | HnRNP L, heterogeneous nuclear ribonucleoprotein L | 99.57 | |
| 3ns6_A | 100 | Eukaryotic translation initiation factor 3 subuni; | 99.56 | |
| 3ucg_A | 89 | Polyadenylate-binding protein 2; ferredoxin-like, | 99.56 | |
| 4a8x_A | 88 | RNA-binding protein with serine-rich domain 1; tra | 99.55 | |
| 2dnz_A | 95 | Probable RNA-binding protein 23; RNA recognition m | 99.55 | |
| 2cq3_A | 103 | RNA-binding protein 9; RRM domain, structural geno | 99.55 | |
| 2cqi_A | 103 | Nucleolysin TIAR; RNA recognition motif, RRM, RNA | 99.55 | |
| 3mdf_A | 85 | Peptidyl-prolyl CIS-trans isomerase E; RRM domain, | 99.55 | |
| 2cq0_A | 103 | Eukaryotic translation initiation factor 3 subunit | 99.54 | |
| 2dgs_A | 99 | DAZ-associated protein 1; RRM domain, structural g | 99.54 | |
| 2do4_A | 100 | Squamous cell carcinoma antigen recognized by T- c | 99.54 | |
| 2div_A | 99 | TRNA selenocysteine associated protein; structural | 99.54 | |
| 1x4a_A | 109 | Splicing factor, arginine/serine-rich 1 (splicing | 99.54 | |
| 1x4d_A | 102 | Matrin 3; structural genomics, RRM domain, NPPSFA, | 99.54 | |
| 2dnm_A | 103 | SRP46 splicing factor; RRM domain, RBD, structural | 99.54 | |
| 1x5u_A | 105 | Splicing factor 3B subunit 4 (spliceosome associat | 99.54 | |
| 1p27_B | 106 | RNA-binding protein 8A; nuclear protein, mRNA spli | 99.54 | |
| 2cpf_A | 98 | RNA binding motif protein 19; RNA recognition moti | 99.54 | |
| 2la6_A | 99 | RNA-binding protein FUS; structural genomics, nort | 99.54 | |
| 2cqb_A | 102 | Peptidyl-prolyl CIS-trans isomerase E; RNA recogni | 99.54 | |
| 2cph_A | 107 | RNA binding motif protein 19; RNA recognition moti | 99.54 | |
| 2dgv_A | 92 | HnRNP M, heterogeneous nuclear ribonucleoprotein M | 99.53 | |
| 2err_A | 109 | Ataxin-2-binding protein 1; protein-RNA complex, R | 99.53 | |
| 2cqd_A | 116 | RNA-binding region containing protein 1; RNA recog | 99.53 | |
| 2cpz_A | 115 | CUG triplet repeat RNA-binding protein 1; RRM doma | 99.53 | |
| 2kt5_A | 124 | RNA and export factor-binding protein 2; chaperone | 99.53 | |
| 2cqc_A | 95 | Arginine/serine-rich splicing factor 10; RNA recog | 99.53 | |
| 2dnh_A | 105 | Bruno-like 5, RNA binding protein; RRM domain, RBD | 99.53 | |
| 2dhg_A | 104 | TRNA selenocysteine associated protein (SECP43); R | 99.53 | |
| 3n9u_C | 156 | Cleavage and polyadenylation specificity factor S; | 99.53 | |
| 2cq1_A | 101 | PTB-like protein L; RRM domain, structural genomic | 99.52 | |
| 2ad9_A | 119 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.52 | |
| 1x5s_A | 102 | Cold-inducible RNA-binding protein; structure geno | 99.52 | |
| 1wex_A | 104 | Hypothetical protein (riken cDNA 2810036L13); stru | 99.52 | |
| 2j8a_A | 136 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 99.52 | |
| 2dgo_A | 115 | Cytotoxic granule-associated RNA binding protein 1 | 99.52 | |
| 1x5t_A | 96 | Splicing factor 3B subunit 4; structure genomics, | 99.52 | |
| 2cpi_A | 111 | CCR4-NOT transcription complex subunit 4; RNA reco | 99.52 | |
| 2ywk_A | 95 | Putative RNA-binding protein 11; RRM-domain, struc | 99.52 | |
| 2e5h_A | 94 | Zinc finger CCHC-type and RNA-binding motif- conta | 99.52 | |
| 2jrs_A | 108 | RNA-binding protein 39; RNA binding motif of RBM39 | 99.52 | |
| 3lqv_A | 115 | PRE-mRNA branch site protein P14; cysless mutant, | 99.52 | |
| 2jvr_A | 111 | Nucleolar protein 3; RNA recognition motif, nucleu | 99.52 | |
| 2mss_A | 75 | Protein (musashi1); RNA-binding domain, RNA bindin | 99.52 | |
| 1oo0_B | 110 | CG8781-PA, drosophila Y14; RNA recognition motif, | 99.52 | |
| 2krb_A | 81 | Eukaryotic translation initiation factor 3 subunit | 99.51 | |
| 1x4f_A | 112 | Matrin 3; structural genomics, RRM domain, NPPSFA, | 99.51 | |
| 1x4h_A | 111 | RNA-binding protein 28; structural genomics, RRM d | 99.51 | |
| 2d9p_A | 103 | Polyadenylate-binding protein 3; RRM domain, struc | 99.51 | |
| 2fy1_A | 116 | RNA-binding motif protein, Y chromosome, family 1 | 99.51 | |
| 2dgp_A | 106 | Bruno-like 4, RNA binding protein; RRM domain, str | 99.51 | |
| 1wg5_A | 104 | Heterogeneous nuclear ribonucleoprotein H; structu | 99.51 | |
| 2nlw_A | 105 | Eukaryotic translation initiation factor 3 subunit | 99.51 | |
| 1p1t_A | 104 | Cleavage stimulation factor, 64 kDa subunit; RNA r | 99.51 | |
| 2ki2_A | 90 | SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA | 99.5 | |
| 2dis_A | 109 | Unnamed protein product; structural genomics, RRM | 99.5 | |
| 3s7r_A | 87 | Heterogeneous nuclear ribonucleoprotein A/B; ferre | 99.5 | |
| 2do0_A | 114 | HnRNP M, heterogeneous nuclear ribonucleoprotein M | 99.5 | |
| 1x4e_A | 85 | RNA binding motif, single-stranded interacting pro | 99.5 | |
| 1wez_A | 102 | HnRNP H', FTP-3, heterogeneous nuclear ribonucleop | 99.5 | |
| 2dh8_A | 105 | DAZ-associated protein 1; RRM domain, structural g | 99.5 | |
| 2cpe_A | 113 | RNA-binding protein EWS; RNA recognition motif, RR | 99.5 | |
| 2e5j_A | 97 | Methenyltetrahydrofolate synthetase domain contain | 99.5 | |
| 2j76_E | 100 | EIF-4B, EIF4B, eukaryotic translation initiation f | 99.49 | |
| 3ex7_B | 126 | RNA-binding protein 8A; protein-RNA complex, mRNA | 99.49 | |
| 2la4_A | 101 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.49 | |
| 2lmi_A | 107 | GRSF-1, G-rich sequence factor 1; G-rich RNA seque | 99.49 | |
| 2db1_A | 118 | Heterogeneous nuclear ribonucleoprotein F; RRM dom | 99.49 | |
| 2kn4_A | 158 | Immunoglobulin G-binding protein G, splicing FACT | 99.49 | |
| 2cq4_A | 114 | RNA binding motif protein 23; RRM domain, structur | 99.49 | |
| 2khc_A | 118 | Testis-specific RNP-type RNA binding protein; RRM, | 99.49 | |
| 2kxn_B | 129 | Transformer-2 protein homolog beta; SR protein, RR | 99.48 | |
| 2m2b_A | 131 | RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio | 99.48 | |
| 1wi8_A | 104 | EIF-4B, eukaryotic translation initiation factor 4 | 99.48 | |
| 2cpy_A | 114 | RNA-binding protein 12; RRM domain, structural gen | 99.48 | |
| 2hgl_A | 136 | HNRPF protein, heterogeneous nuclear ribonucleopro | 99.48 | |
| 1u6f_A | 139 | Tcubp1, RNA-binding protein UBP1; trypanosome, mRN | 99.48 | |
| 2rs2_A | 109 | Musashi-1, RNA-binding protein musashi homolog 1; | 99.48 | |
| 1uaw_A | 77 | Mouse-musashi-1; RNP-type structure, RNA binding p | 99.48 | |
| 3ulh_A | 107 | THO complex subunit 4; nuclear protein, RNA bindin | 99.48 | |
| 1fj7_A | 101 | Nucleolin RBD1, protein C23; RNP, RRM, RNA binding | 99.47 | |
| 2ek1_A | 95 | RNA-binding protein 12; RNA recognition motif, dim | 99.47 | |
| 2dng_A | 103 | Eukaryotic translation initiation factor 4H; RRM d | 99.47 | |
| 2cqp_A | 98 | RNA-binding protein 12; RNA recognition motif, RRM | 99.47 | |
| 1iqt_A | 75 | AUF1, heterogeneous nuclear ribonucleoprotein D0; | 99.47 | |
| 2a3j_A | 127 | U1 small nuclear ribonucleoprotein A; computationa | 99.47 | |
| 2jwn_A | 124 | Embryonic polyadenylate-binding protein 2-B; epabp | 99.47 | |
| 1x4b_A | 116 | Heterogeneous nuclear ribonucleoproteins A2/B1; st | 99.46 | |
| 1nu4_A | 97 | U1A RNA binding domain; RNA recognition motif, U1 | 99.46 | |
| 2hvz_A | 101 | Splicing factor, arginine/serine-rich 7; RRM, RNA | 99.46 | |
| 1why_A | 97 | Hypothetical protein riken cDNA 1810017N16; RNA re | 99.46 | |
| 2dnn_A | 109 | RNA-binding protein 12; RRM domain, RBD, structura | 99.45 | |
| 2ku7_A | 140 | MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio | 99.45 | |
| 2cqg_A | 103 | TDP-43, TAR DNA-binding protein-43; RNA recognitio | 99.45 | |
| 2xnq_A | 97 | Nuclear polyadenylated RNA-binding protein 3; tran | 99.45 | |
| 1whx_A | 111 | Hypothetical protein riken cDNA 1200009A02; RNA re | 99.45 | |
| 1x4c_A | 108 | Splicing factor, arginine/serine-rich 1; structura | 99.45 | |
| 2ytc_A | 85 | PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s | 99.45 | |
| 2dha_A | 123 | FLJ20171 protein; RRM domain, structural genomics, | 99.45 | |
| 2dnq_A | 90 | RNA-binding protein 4B; RRM domain,RBD, structural | 99.45 | |
| 1x4g_A | 109 | Nucleolysin TIAR; structural genomics, RRM domain, | 99.44 | |
| 2lea_A | 135 | Serine/arginine-rich splicing factor 2; SR protein | 99.44 | |
| 2dgw_A | 91 | Probable RNA-binding protein 19; RRM domain, struc | 99.44 | |
| 2hgm_A | 126 | HNRPF protein, heterogeneous nuclear ribonucleopro | 99.44 | |
| 1h2v_Z | 156 | 20 kDa nuclear CAP binding protein; CAP-binding-co | 99.43 | |
| 3d2w_A | 89 | TAR DNA-binding protein 43; DP-43 proteinopathy, T | 99.43 | |
| 2hgn_A | 139 | Heterogeneous nuclear ribonucleoprotein F; RNA rec | 99.43 | |
| 2fc9_A | 101 | NCL protein; structure genomics, RRM_1 domain, str | 99.43 | |
| 2jvo_A | 108 | Nucleolar protein 3; nucleus, phosphorylation, rib | 99.42 | |
| 2cpd_A | 99 | Apobec-1 stimulating protein; RNA recognition moti | 99.42 | |
| 1x5o_A | 114 | RNA binding motif, single-stranded interacting pro | 99.42 | |
| 2cpj_A | 99 | Non-POU domain-containing octamer-binding protein; | 99.42 | |
| 2i2y_A | 150 | Fusion protein consists of immunoglobin G- binding | 99.42 | |
| 3q2s_C | 229 | Cleavage and polyadenylation specificity factor S; | 99.42 | |
| 2dnp_A | 90 | RNA-binding protein 14; RRM domain, RBD, structura | 99.42 | |
| 1wf1_A | 110 | RNA-binding protein RALY; structural genomics, RRM | 99.42 | |
| 2xs2_A | 102 | Deleted in azoospermia-like; RNA binding protein-R | 99.41 | |
| 1wg1_A | 88 | KIAA1579 protein, homolog EXC-7; RBD, structural g | 99.41 | |
| 3md3_A | 166 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.41 | |
| 2kvi_A | 96 | Nuclear polyadenylated RNA-binding protein 3; RNA- | 99.41 | |
| 2cpx_A | 115 | Hypothetical protein FLJ11016; RRM domain, structu | 99.4 | |
| 2dgt_A | 92 | RNA-binding protein 30; RRM domain, structural gen | 99.4 | |
| 1wel_A | 124 | RNA-binding protein 12; structural genomics, NPPSF | 99.4 | |
| 1fjc_A | 96 | Nucleolin RBD2, protein C23; RNP, RRM, RNA binding | 99.4 | |
| 1rk8_A | 165 | CG8781-PA, CG8781-PA protein; mRNA processing, RRM | 99.4 | |
| 2e5g_A | 94 | U6 snRNA-specific terminal uridylyltransferase 1; | 99.4 | |
| 4f02_A | 213 | Polyadenylate-binding protein 1; mRNA, eukaryotic | 99.39 | |
| 2cqh_A | 93 | IGF-II mRNA-binding protein 2 isoform A; RNA recog | 99.39 | |
| 4f02_A | 213 | Polyadenylate-binding protein 1; mRNA, eukaryotic | 99.39 | |
| 2fc8_A | 102 | NCL protein; structure genomics, RRM_1 domain, str | 99.39 | |
| 2dgu_A | 103 | Heterogeneous nuclear ribonucleoprotein Q; RRM dom | 99.39 | |
| 1sjr_A | 164 | Polypyrimidine tract-binding protein 1; extended b | 99.37 | |
| 2cq2_A | 114 | Hypothetical protein LOC91801; RRM domain, structu | 99.37 | |
| 2lcw_A | 116 | RNA-binding protein FUS; RRM, nucleic acid binding | 99.06 | |
| 2qfj_A | 216 | FBP-interacting repressor; protein-DNA complex; HE | 99.37 | |
| 2e44_A | 96 | Insulin-like growth factor 2 mRNA binding protein | 99.36 | |
| 3tyt_A | 205 | Heterogeneous nuclear ribonucleoprotein L; ferredo | 99.36 | |
| 1fxl_A | 167 | Paraneoplastic encephalomyelitis antigen HUD; prot | 99.36 | |
| 2hzc_A | 87 | Splicing factor U2AF 65 kDa subunit; RNA splicing, | 99.36 | |
| 2cjk_A | 167 | Nuclear polyadenylated RNA-binding protein 4; HRP1 | 99.36 | |
| 1l3k_A | 196 | Heterogeneous nuclear ribonucleoprotein A1; nuclea | 99.36 | |
| 3beg_B | 115 | Splicing factor, arginine/serine-rich 1; kinase, S | 99.36 | |
| 1wf0_A | 88 | TDP-43, TAR DNA-binding protein-43; structural gen | 99.36 | |
| 1b7f_A | 168 | Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP | 99.36 | |
| 2f3j_A | 177 | RNA and export factor binding protein 2; RRM domai | 99.35 | |
| 3md3_A | 166 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.35 | |
| 3zzy_A | 130 | Polypyrimidine tract-binding protein 1; protein bi | 99.35 | |
| 2e5i_A | 124 | Heterogeneous nuclear ribonucleoprotein L-like; RR | 99.35 | |
| 3egn_A | 143 | RNA-binding protein 40; RNA recognition motif (RRM | 99.35 | |
| 2g4b_A | 172 | Splicing factor U2AF 65 kDa subunit; protein-RNA c | 99.33 | |
| 1x5p_A | 97 | Negative elongation factor E; structure genomics, | 99.33 | |
| 2dnl_A | 114 | Cytoplasmic polyadenylation element binding protei | 99.32 | |
| 1l3k_A | 196 | Heterogeneous nuclear ribonucleoprotein A1; nuclea | 99.31 | |
| 2qfj_A | 216 | FBP-interacting repressor; protein-DNA complex; HE | 99.31 | |
| 2yh0_A | 198 | Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli | 99.31 | |
| 2voo_A | 193 | Lupus LA protein; RNA-binding protein, RNA recogni | 99.3 | |
| 2pe8_A | 105 | Splicing factor 45; RRM, protein binding; 2.00A {H | 99.29 | |
| 3nmr_A | 175 | Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl | 99.28 | |
| 3nmr_A | 175 | Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl | 99.28 | |
| 3pgw_S | 437 | U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM | 99.28 | |
| 2cjk_A | 167 | Nuclear polyadenylated RNA-binding protein 4; HRP1 | 99.27 | |
| 1qm9_A | 198 | Polypyrimidine tract-binding protein; ribonucleopr | 99.26 | |
| 2adc_A | 229 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.25 | |
| 2diu_A | 96 | KIAA0430 protein; structural genomics, RRM domain, | 99.24 | |
| 1b7f_A | 168 | Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP | 99.24 | |
| 2bz2_A | 121 | Negative elongation factor E; NELF E, RNA recognit | 99.24 | |
| 1fje_B | 175 | Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin | 99.23 | |
| 2g4b_A | 172 | Splicing factor U2AF 65 kDa subunit; protein-RNA c | 99.23 | |
| 1fxl_A | 167 | Paraneoplastic encephalomyelitis antigen HUD; prot | 99.23 | |
| 3pgw_A | 282 | U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c | 99.21 | |
| 2yh0_A | 198 | Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli | 99.19 | |
| 3u1l_A | 240 | PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; | 99.18 | |
| 1fje_B | 175 | Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin | 99.17 | |
| 2dit_A | 112 | HIV TAT specific factor 1 variant; structural geno | 99.17 | |
| 3smz_A | 284 | Protein raver-1, ribonucleoprotein PTB-binding 1; | 99.16 | |
| 3tyt_A | 205 | Heterogeneous nuclear ribonucleoprotein L; ferredo | 99.16 | |
| 3sde_A | 261 | Paraspeckle component 1; RRM, anti parallel right | 99.15 | |
| 1qm9_A | 198 | Polypyrimidine tract-binding protein; ribonucleopr | 99.15 | |
| 3smz_A | 284 | Protein raver-1, ribonucleoprotein PTB-binding 1; | 99.14 | |
| 2adc_A | 229 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.14 | |
| 1jmt_A | 104 | Splicing factor U2AF 35 kDa subunit; RRM, RNA spli | 99.14 | |
| 3pgw_A | 282 | U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c | 99.13 | |
| 2ghp_A | 292 | U4/U6 snRNA-associated splicing factor PRP24; RNA | 99.12 | |
| 2ghp_A | 292 | U4/U6 snRNA-associated splicing factor PRP24; RNA | 99.12 | |
| 3sde_A | 261 | Paraspeckle component 1; RRM, anti parallel right | 99.1 | |
| 3tht_A | 345 | Alkylated DNA repair protein ALKB homolog 8; struc | 99.05 | |
| 3v4m_A | 105 | Splicing factor U2AF 65 kDa subunit; canonical RNA | 99.03 | |
| 3ue2_A | 118 | Poly(U)-binding-splicing factor PUF60; RNA recogni | 98.98 | |
| 2d9o_A | 100 | DNAJ (HSP40) homolog, subfamily C, member 17; RRM | 98.91 | |
| 3s6e_A | 114 | RNA-binding protein 39; ferredoxin-like, structura | 98.73 | |
| 2dnr_A | 91 | Synaptojanin-1; RRM domain, RBD, structural genomi | 98.66 | |
| 1owx_A | 121 | Lupus LA protein, SS-B, LA; RRM, transcription; NM | 98.53 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 98.45 | |
| 1ufw_A | 95 | Synaptojanin 2; RNP domain, structural genomics, r | 98.32 | |
| 2dhx_A | 104 | Poly (ADP-ribose) polymerase family, member 10 var | 97.19 | |
| 2l9w_A | 117 | U4/U6 snRNA-associated-splicing factor PRP24; RRM, | 97.01 | |
| 2kn4_A | 158 | Immunoglobulin G-binding protein G, splicing FACT | 94.94 | |
| 2i2y_A | 150 | Fusion protein consists of immunoglobin G- binding | 90.89 | |
| 1wey_A | 104 | Calcipressin 1; structural genomics, RRM domain, r | 88.53 | |
| 1wwh_A | 119 | Nucleoporin 35, nucleoporin; structural genomics, | 87.27 | |
| 3pq1_A | 464 | Poly(A) RNA polymerase; nucleotidyl transferase, R | 83.19 |
| >2j7n_A RNA-dependent RNA polymerase; RNAI response, RNA-directed RNA polymerase, hydrolase; 2.30A {Neurospora crassa} PDB: 2j7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-112 Score=1027.53 Aligned_cols=482 Identities=19% Similarity=0.290 Sum_probs=400.9
Q ss_pred CceeecCCeecccCceeccCCCCCCcEEEEEEEcCCCCccCCcccCCCccCCCcchhhhHHHHHHHHhhcC-eEecceEe
Q 035741 276 SKVYFCGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLGKLYSTVLSPQISSTNGERRTRIYERVLSTLRNG-IVIGDKKF 354 (890)
Q Consensus 276 tri~l~~P~~e~sNRVlR~f~~~~drFLRV~F~DE~~~~l~~~~~~p~~~~~~~~~~~~i~~rv~~~L~~G-i~I~gR~y 354 (890)
.++.|.+|++++|||+.|+||+ ||||||+|++++....+ +.|... . ....+++|.++|.+| +.+.||+|
T Consensus 131 ~~l~L~p~~l~~s~R~~RrfGs--DrFL~V~fp~~~~~~~~---~~~~~~-~----~~~~~~~v~~~l~~~~~~~~gr~~ 200 (1022)
T 2j7n_A 131 YLVKLKPLMFEQGCRLTRRFGP--DRFFEILIPSPTSTSPS---VPPVVS-K----QPAAVEEVIQWLTMGQHSLVGRQW 200 (1022)
T ss_dssp EEEEECCCEEEECBHHHHHHCG--GGEEEEEEECTTCCCSS---SCTTSS-S----SSSCHHHHHHHHHSSCEEETTEEE
T ss_pred eEEEecCCccCCCceEEEeeCC--ceeEEEEecCCcccccc---ccchhc-c----chHHHHHHHHHHhcCcEEEeccee
Confidence 5899999999999999999996 99999999998654321 112111 0 111367888888777 56788888
Q ss_pred EEEeec---------cCccc--------cCeEEEEecC------------------------CCCCHHHHHHHhcCccCC
Q 035741 355 ETLAFS---------NSQER--------ENTLWMFASR------------------------PELTAADIRERMGDFREI 393 (890)
Q Consensus 355 ~FLa~S---------nSqLR--------e~s~wFfa~~------------------------~~~t~~~Ir~wmG~F~~i 393 (890)
+++-.- ..|+| ...||||+.+ ..+|+++||+|||+|+++
T Consensus 201 r~f~~~d~~~r~~~~~~~l~~~~~~~~~~~Rv~~f~~~G~~i~~~~f~fl~~s~lre~s~~~~~ls~~~ir~wmg~f~~n 280 (1022)
T 2j7n_A 201 RAFFAKDAGYRKPLREFQLRAEDPKPIIKERVHFFAETGITFRPDVFKTRSVVPAEEPVEQRTEFKVSQMLDWLLQLDNN 280 (1022)
T ss_dssp EEEEEEECC--------------CCCCCEEEEEEEEEEETTCBCCCC-------------CCBCCCHHHHHHHHHCGGGC
T ss_pred EEEeeccccccccccccccccccccccccceEEEEeccCccccCccccccccccccccccccCCCCHHHHHHhccChhhc
Confidence 844221 12332 2457777631 248999999999999986
Q ss_pred C--CHHHHHHHhccccccccCceeccc----------------------ceeeccHHHHHHHHHHcCCCCCCCceEEEee
Q 035741 394 K--NVTKYAARLGQSFASSREALHVDS----------------------NIGKISAELAETVAKKCGYAIYTPSAFQIRY 449 (890)
Q Consensus 394 ~--~vaK~aARlgq~FSsT~~tv~v~~----------------------GvG~IS~~lA~~I~~~l~l~~~~PSAfQiR~ 449 (890)
+ +++|||||||||||+|.+|+.|.+ |||+||+++|++|++++++ ..+||||||||
T Consensus 281 ~~q~~aK~aARigq~FS~T~~tv~v~~~~I~~~~dDI~~~~g~g~vFTDGvG~IS~~lA~~I~~~l~l-~~~PSAfQiR~ 359 (1022)
T 2j7n_A 281 TWQPHLKLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLSPSGTGEVMNDGVGRMSRSVAKRIRDVLGL-GDVPSAVQGRF 359 (1022)
T ss_dssp TTSBHHHHHHTTHHHHSBCEEEEECCGGGEEECSSCCBCTTSSCCBSSTTEEEECHHHHHHHHHHHTC-SSCCSEEEEEE
T ss_pred ccchHHHHHHHhhhhhcCccCcEEechHHEEEcCCccccCCCCCCeecCCchHhhHHHHHHHHHHcCC-CCCCcEEEEEe
Confidence 4 599999999999999999875422 9999999999999999999 57899999999
Q ss_pred cCee---------------EEeCCCccCCCCC-----CCceeEeecC-Ccccccccc--------c-CChHHHHHHHHHH
Q 035741 450 GGYK---------------VTLRNNMFKYKSE-----STSLDILANS-KYQREGVAR--------L-RLDNVFERKQREV 499 (890)
Q Consensus 450 gG~K---------------I~lRpSm~KF~s~-----~~~LeIv~~S-~~~p~~LNR--------L-V~d~vF~~lq~~~ 499 (890)
|||| |+|||||.||+++ +++||||++| +|.|++||| | |++++|++++.+.
T Consensus 360 gGaKGvl~vdp~~~~~~~~I~lRpSm~KF~~~~~d~~~~~LEIv~~s~~~~~~~LNRQlI~lL~~lGV~~~~f~~~i~~~ 439 (1022)
T 2j7n_A 360 GSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDR 439 (1022)
T ss_dssp TTEEEEEEECTTCCSCCCCEEECTTTBCSCCCCCSGGGSEEEEEEECCCCCCCCBCTTTHHHHHHTBSSHHHHHHHHHHH
T ss_pred ccceEEEEECcccCCCcceEEeCCcceeecCCCCCcccCeEEEEeecCCCCCceecHHHHHHHHhCCcCHHHHHHHHHHH
Confidence 9999 7899999999973 6899999997 589999999 3 9999998875544
Q ss_pred H-H-------HHHHHhcCHHHHHHHHHhcC------------------CCchHHHHHHHHHCCCCCCCchHHHHHHHHHH
Q 035741 500 V-A-------RLDAILTDSSKVQEALELMS------------------SAENTNVLKELLNCGYKPDAEPFLSMMPQTFH 553 (890)
Q Consensus 500 l-~-------~l~~~l~d~~~a~~~L~~~~------------------~~~~~~~l~~ll~~Gf~~~~ePfl~~lL~~~~ 553 (890)
+ + ....+++++..++.++.... +...++++..|+.+||+|.++|||+++++.++
T Consensus 440 ~~~~L~~~l~~~~~al~~~~~~r~~l~~~~~~~~~r~~~g~~~~~~glp~s~~~~l~~Ll~aGf~p~~epfL~~~l~~~~ 519 (1022)
T 2j7n_A 440 LINDLQRQFSEQKHALNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYLQDIAWDLQ 519 (1022)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHSCCHHHHHHHTSCCEETTEESSHHHHHHHHHHTTCCTTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHhhccccccccccccchhhccCccchHHHHHHHHHcCCCccccHHHHHHHHHHH
Confidence 2 2 23455778877777664321 12345788999999999999999999999999
Q ss_pred HHHHHHHhhhcceeecCcceEEEeecCCCCCCCCc---------------------ceEEEeeCCCCCCCceEEEEEecC
Q 035741 554 ASNLLELRTRARIFIQNGQAMMGCLDEKGTLEYGQ---------------------GLMVVAKKPCLHPGDMRVLRAVDV 612 (890)
Q Consensus 554 ~~~L~~Lk~K~RI~Vp~s~~l~GV~DetG~L~~GE---------------------G~VlV~RnPclHPGDIr~v~AVd~ 612 (890)
..+|+.||+|+||+||+|++||||+||||+|+||| |+|||+|||||||||||+|+||++
T Consensus 520 ~~~l~~LK~k~rI~V~~s~~L~GV~DetG~L~eGEVfv~~s~~~~~~~~~~~~l~gg~VlVtRnP~lhPGDIrvv~AV~~ 599 (1022)
T 2j7n_A 520 KRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFK 599 (1022)
T ss_dssp HHHHHHHHHHCCBCCSSEEEEEEEECTTSCCCTTEEEEEEEEEEEETTEEEEEECSEEEEEECSSCCSGGGEEEEEECCC
T ss_pred HHHHHHHHHhhccccccceEEEEEecCCCccCCCeEEEEeccccccCCCCceeecCceEEEEeCCCcCcCceeEEEeccC
Confidence 99999999999999999999999999999999998 589999999999999999999999
Q ss_pred CCCCCCCCeEEcCCCCCCCCCCcccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCcc-------ccc----C-------
Q 035741 613 PALHHMVDCVLFPAKGERPHTNECSGSDQDGEIYFVCWDHDRIPPLQFQPTAYTPAPE-------KIL----A------- 674 (890)
Q Consensus 613 P~L~hL~dVIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lip~~~~~P~~Y~~~~~-------~~l----~------- 674 (890)
|+||||+||||||++|+||+||||||||||||+|||||||+|||++.+.|++..++.. ..+ +
T Consensus 600 PeL~hL~DvIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lv~~f~na~~p~~p~~~~y~~k~~~~~~~~~~~~~~g~~ 679 (1022)
T 2j7n_A 600 PELHSLKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVNAEMPLEPDLSRYLKKDKTTFKQLMASHGTGSA 679 (1022)
T ss_dssp GGGTTCCSEEEECSCSSSCHHHHTTTCCSSSCEEEEECCHHHHHTBCCCCCCCCCCCTTTSEECCCBHHHHHTTTCSSHH
T ss_pred hhhhccCCeEEccCCCCCCChhHhcCCCCCCCeEEEEechhhcccccCCCCCCCCchhhhccccccchhhhhhccccccc
Confidence 9999999999999999999999999999999999999999999998776655333211 111 0
Q ss_pred -CCCCHHH-HHHHHHHhhccChhHHHHHHHHHHhccCCCCCCCCchHHHHHHHhhccccCCCCCcccc--CccccCCCCC
Q 035741 675 -RDVTIED-VEEYFADYIVNDSLGIICNAHVVYAYSEPDKAMSNRCPDLVKLSSIVGDFSKTGVAATI--PSRLRVKIYP 750 (890)
Q Consensus 675 -~~vt~~d-i~~ffv~ym~~d~LG~is~aHl~~aD~~~~G~~~~~Cl~LA~L~S~AVD~~KTG~~v~i--p~~L~~~~~P 750 (890)
++++.+| +++||+.||++|.||+|||+|+..+|++ .|+.+++|++||+|||+||||||||+++++ |++|+++.||
T Consensus 680 ~~~~~~~d~i~~ff~~~m~~d~LG~is~~h~~~~~~~-~g~~~~~cl~LA~L~S~AVD~~KtG~pv~~~~~~~lr~~~~p 758 (1022)
T 2j7n_A 680 AKEQTTYDMIQKSFHFALQPNFLGMCTNYKERLCYIN-NSVSNKPAIILSSLVGNLVDQSKQGIVFNEASWAQLRRELLG 758 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH-TCSSSHHHHHHHHHHHHHTTHHHHTEECCHHHHHHHHHHHSC
T ss_pred cCchhHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhhCccccCcccChhhhhhhhHhhCC
Confidence 1233344 5679999999999999999999888875 699999999999999999999999999998 8899999999
Q ss_pred CCcCCCCCCccccCCccchh
Q 035741 751 DFMEKQDKTWYESQHIVGNL 770 (890)
Q Consensus 751 dFMek~~~~~Y~S~kiLG~L 770 (890)
|||+ .++++|+|++++|+.
T Consensus 759 ~~m~-~~~p~Y~s~~~~g~~ 777 (1022)
T 2j7n_A 759 GALS-LPDPMYKSDSWLGRG 777 (1022)
T ss_dssp CSSC-CCCCGGGSSSCCSSS
T ss_pred CCCC-CCCCccccCcccCCC
Confidence 9999 678999999999984
|
| >4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2lxi_A RNA-binding protein 10; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A | Back alignment and structure |
|---|
| >3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C | Back alignment and structure |
|---|
| >2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 | Back alignment and structure |
|---|
| >1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B | Back alignment and structure |
|---|
| >2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
| >3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A | Back alignment and structure |
|---|
| >3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A | Back alignment and structure |
|---|
| >4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A* | Back alignment and structure |
|---|
| >2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A | Back alignment and structure |
|---|
| >2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A | Back alignment and structure |
|---|
| >2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A | Back alignment and structure |
|---|
| >2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} | Back alignment and structure |
|---|
| >2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A | Back alignment and structure |
|---|
| >1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} | Back alignment and structure |
|---|
| >2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B | Back alignment and structure |
|---|
| >2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A | Back alignment and structure |
|---|
| >2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A | Back alignment and structure |
|---|
| >1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* | Back alignment and structure |
|---|
| >2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A | Back alignment and structure |
|---|
| >1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} | Back alignment and structure |
|---|
| >2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A | Back alignment and structure |
|---|
| >2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* | Back alignment and structure |
|---|
| >2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} | Back alignment and structure |
|---|
| >2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A | Back alignment and structure |
|---|
| >2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A | Back alignment and structure |
|---|
| >1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A | Back alignment and structure |
|---|
| >1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A | Back alignment and structure |
|---|
| >2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A | Back alignment and structure |
|---|
| >2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} | Back alignment and structure |
|---|
| >1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... | Back alignment and structure |
|---|
| >2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A | Back alignment and structure |
|---|
| >1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A | Back alignment and structure |
|---|
| >2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A | Back alignment and structure |
|---|
| >1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X | Back alignment and structure |
|---|
| >3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} | Back alignment and structure |
|---|
| >2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A | Back alignment and structure |
|---|
| >2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A | Back alignment and structure |
|---|
| >2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A | Back alignment and structure |
|---|
| >3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C | Back alignment and structure |
|---|
| >2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A | Back alignment and structure |
|---|
| >2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A | Back alignment and structure |
|---|
| >1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A | Back alignment and structure |
|---|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A | Back alignment and structure |
|---|
| >2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* | Back alignment and structure |
|---|
| >2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* | Back alignment and structure |
|---|
| >2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A | Back alignment and structure |
|---|
| >1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A | Back alignment and structure |
|---|
| >2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A | Back alignment and structure |
|---|
| >2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A | Back alignment and structure |
|---|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A | Back alignment and structure |
|---|
| >2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A | Back alignment and structure |
|---|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C | Back alignment and structure |
|---|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A | Back alignment and structure |
|---|
| >3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A | Back alignment and structure |
|---|
| >1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A | Back alignment and structure |
|---|
| >2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A | Back alignment and structure |
|---|
| >2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A | Back alignment and structure |
|---|
| >1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A | Back alignment and structure |
|---|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A | Back alignment and structure |
|---|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A | Back alignment and structure |
|---|
| >2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A | Back alignment and structure |
|---|
| >2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A | Back alignment and structure |
|---|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A | Back alignment and structure |
|---|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A | Back alignment and structure |
|---|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* | Back alignment and structure |
|---|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C | Back alignment and structure |
|---|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 | Back alignment and structure |
|---|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A | Back alignment and structure |
|---|
| >2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A | Back alignment and structure |
|---|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A | Back alignment and structure |
|---|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A | Back alignment and structure |
|---|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A | Back alignment and structure |
|---|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A | Back alignment and structure |
|---|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A | Back alignment and structure |
|---|
| >3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A | Back alignment and structure |
|---|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A | Back alignment and structure |
|---|
| >2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E | Back alignment and structure |
|---|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A | Back alignment and structure |
|---|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B | Back alignment and structure |
|---|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 | Back alignment and structure |
|---|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E | Back alignment and structure |
|---|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A | Back alignment and structure |
|---|
| >1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 | Back alignment and structure |
|---|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A | Back alignment and structure |
|---|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A | Back alignment and structure |
|---|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A | Back alignment and structure |
|---|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B | Back alignment and structure |
|---|
| >3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* | Back alignment and structure |
|---|
| >3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A | Back alignment and structure |
|---|
| >3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A | Back alignment and structure |
|---|
| >2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A | Back alignment and structure |
|---|
| >2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
| >1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} | Back alignment and structure |
|---|
| >2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A | Back alignment and structure |
|---|
| >1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
| >3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 890 | |||
| d1fxla1 | 82 | Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 | 99.66 | |
| d2cqba1 | 89 | Peptidyl-prolyl cis-trans isomerase E, N-terminal | 99.65 | |
| d1b7fa1 | 82 | Sex-lethal protein {Drosophila melanogaster [TaxId | 99.65 | |
| d1cvja1 | 80 | Poly(A)-binding protein {Human (Homo sapiens) [Tax | 99.64 | |
| d2cq3a1 | 93 | RNA-binding protein 9 {Human (Homo sapiens) [TaxId | 99.64 | |
| d1x5ua1 | 93 | Splicing factor 3B subunit 4 {Human (Homo sapiens) | 99.63 | |
| d1cvja2 | 89 | Poly(A)-binding protein {Human (Homo sapiens) [Tax | 99.63 | |
| d2cqda1 | 103 | RNA-binding region containing protein 1 {Human (Ho | 99.62 | |
| d2cpfa1 | 85 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.61 | |
| d1l3ka2 | 79 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.61 | |
| d1whwa_ | 99 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.61 | |
| d2cpha1 | 94 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.61 | |
| d2cq0a1 | 90 | Eukaryotic translation initiation factor 3 subunit | 99.61 | |
| d1h2vz_ | 93 | CBP20, 20KDa nuclear cap-binding protein {Human (H | 99.6 | |
| d2cqca1 | 83 | Arginine/serine-rich splicing factor 10 {Human (Ho | 99.6 | |
| d1hd0a_ | 75 | Heterogeneous nuclear ribonucleoprotein d0 {Human | 99.6 | |
| d1no8a_ | 78 | Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 | 99.6 | |
| d1l3ka1 | 84 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.6 | |
| d1p1ta_ | 104 | Cleavage stimulation factor, 64 kda subunit {Human | 99.6 | |
| d2ghpa1 | 81 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.6 | |
| d1x5sa1 | 90 | Cold-inducible RNA-binding protein {Human (Homo sa | 99.6 | |
| d1u6fa1 | 139 | RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId | 99.6 | |
| d2cqia1 | 90 | Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 | 99.59 | |
| d2cq4a1 | 101 | RNA binding protein 23 {Human (Homo sapiens) [TaxI | 99.59 | |
| d1rk8a_ | 88 | RNA-binding protein 8 {Fruit fly (Drosophila melan | 99.59 | |
| d1x4ha1 | 98 | RNA-binding protein 28 {Mouse (Mus musculus) [TaxI | 99.58 | |
| d1uawa_ | 77 | Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | 99.58 | |
| d2cpza1 | 102 | CUG triplet repeat RNA-binding protein 1 {Human (H | 99.58 | |
| d2ghpa3 | 86 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.58 | |
| d1fxla2 | 85 | Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 | 99.58 | |
| d2u2fa_ | 85 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.58 | |
| d1x4ba1 | 103 | Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu | 99.57 | |
| d2f9da1 | 114 | Pre-mRNA branch site protein p14 {Human (Homo sapi | 99.57 | |
| d1x0fa1 | 75 | Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s | 99.57 | |
| d2cqga1 | 90 | TAR DNA-binding protein 43, TDP-43 {Human (Homo sa | 99.57 | |
| d1x5ta1 | 83 | Splicing factor 3B subunit 4 {Human (Homo sapiens) | 99.56 | |
| d2msta_ | 75 | Neural RNA-binding protein Musashi-1 {Mouse (Mus m | 99.56 | |
| d1b7fa2 | 85 | Sex-lethal protein {Drosophila melanogaster [TaxId | 99.55 | |
| d1x4aa1 | 95 | Splicing factor, arginine/serine-rich 1, SFRS1 {Hu | 99.55 | |
| d2adca1 | 109 | Polypyrimidine tract-binding protein {Human (Homo | 99.53 | |
| d1fjeb1 | 91 | Nucleolin {Golden hamster (Mesocricetus auratus) [ | 99.53 | |
| d2ghpa2 | 75 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.52 | |
| d1zh5a2 | 85 | Lupus LA protein {Human (Homo sapiens) [TaxId: 960 | 99.52 | |
| d2disa1 | 96 | Hypothetical protein FLJ20273 {Human (Homo sapiens | 99.52 | |
| d2cqha1 | 80 | IGF-II mRNA-binding protein 2 isoform A {Human (Ho | 99.52 | |
| d1x5oa1 | 101 | RNA-binding motif, single-stranded-interacting pro | 99.51 | |
| d2cpea1 | 101 | RNA-binding protein EWS {Human (Homo sapiens) [Tax | 99.51 | |
| d2cpia1 | 89 | E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc | 99.5 | |
| d2adca2 | 88 | Polypyrimidine tract-binding protein {Human (Homo | 99.5 | |
| d1x4ea1 | 72 | RNA-binding motif, single-stranded-interacting pro | 99.5 | |
| d3begb1 | 87 | Splicing factor, arginine/serine-rich 1, SFRS1 {Hu | 99.49 | |
| d1wi8a_ | 104 | Eukaryotic translation initiation factor 4B {Human | 99.49 | |
| d2cpda1 | 86 | APOBEC1 stimulating protein {Human (Homo sapiens) | 99.48 | |
| d1x4ga1 | 96 | Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 | 99.48 | |
| d2cpxa1 | 102 | RNA-binding protein 41, RBM41 {Human (Homo sapiens | 99.47 | |
| d1whxa_ | 111 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.47 | |
| d2bz2a1 | 79 | Negative elongation factor E, NELF-E {Human (Homo | 99.46 | |
| d1nu4a_ | 91 | Splicesomal U1A protein {Human (Homo sapiens) [Tax | 99.46 | |
| d1wf0a_ | 88 | TAR DNA-binding protein 43, TDP-43 {Human (Homo sa | 99.46 | |
| d2cq1a1 | 88 | Polypyrimidine tract-binding protein 2, PTBP2 {Hum | 99.45 | |
| d2cpja1 | 86 | Non-POU domain-containing octamer-binding protein, | 99.44 | |
| d2b0ga1 | 83 | Splicesomal U1A protein {Drosophila melanogaster [ | 99.44 | |
| d1wf2a_ | 98 | Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu | 99.43 | |
| d1wg5a_ | 104 | Heterogeneous nuclear ribonucleoprotein H' {Human | 99.42 | |
| d1fjca_ | 96 | Nucleolin {Golden hamster (Mesocricetus auratus) [ | 99.42 | |
| d1weza_ | 102 | Heterogeneous nuclear ribonucleoprotein H' {Human | 99.41 | |
| d1u2fa_ | 90 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.41 | |
| d1wexa_ | 104 | Heterogeneous nuclear ribonucleoprotein L-like {Mo | 99.41 | |
| d1wg1a_ | 88 | Probable RNA-binding protein KIAA1579 {Human (Homo | 99.4 | |
| d2cqpa1 | 86 | RNA-binding protein 12 {Mouse (Mus musculus) [TaxI | 99.4 | |
| d1wg4a_ | 98 | Splicing factor, arginine/serine-rich 9 (SFRS9) {M | 99.4 | |
| d1wi6a1 | 75 | Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M | 99.39 | |
| d1whya_ | 97 | Putative RNA-binding protein 15B, Rbm15b {Mouse (M | 99.38 | |
| d2cpya1 | 103 | RNA-binding protein 12 {Human (Homo sapiens) [TaxI | 99.38 | |
| d2adba1 | 108 | Polypyrimidine tract-binding protein {Human (Homo | 99.37 | |
| d1x4fa1 | 99 | Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | 99.35 | |
| d1x4da1 | 89 | Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | 99.32 | |
| d1wela1 | 112 | RNA-binding protein 12 {Human (Homo sapiens) [TaxI | 99.27 | |
| d1u1qa_ | 183 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.27 | |
| d1weya_ | 104 | Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090 | 99.14 | |
| d1u1qa_ | 183 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.09 | |
| d1owxa_ | 113 | Lupus LA protein {Human (Homo sapiens) [TaxId: 960 | 99.06 | |
| U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_ | 104 | U2 | 99.06 | |
| d2cq2a1 | 101 | Alkylation repair AlkB homolog 8, ALKBH8 {Human (H | 99.02 | |
| d1wwha1 | 81 | Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090 | 99.0 | |
| d2dita1 | 99 | HIV Tat-specific factor 1 {Human (Homo sapiens) [T | 98.9 | |
| d1o0pa_ | 104 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 98.76 | |
| d2dgxa1 | 73 | Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960 | 90.15 | |
| d1ufwa_ | 95 | Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606] | 82.21 |
| >d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.1e-16 Score=138.32 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=71.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhccCCceEEEEEeeecC---CCCceEEEEecCHHHHHHHHHHHhcCccccCceeEEecC
Q 035741 4 MIMLYGFASLASPKAVKEFLEEHTGEGTVSGVEVGQNK---GSRAHAIVEFTTVEAADFIKCLARERLSYGNSFLKASSA 80 (890)
Q Consensus 4 ti~Vgnlp~~~t~~~l~~~f~~~~~~G~V~s~~i~~dr---~sRgfgfVem~~~~~a~~a~~~~~~~~~~~gr~L~v~ea 80 (890)
||||||||+++|+++|+++|++| |.|.+++|+.|+ ++||||||+|.+.++|++|+..+| |..++|+.|+|+.|
T Consensus 4 ~l~V~nLp~~~te~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~-g~~~~g~~l~v~~A 79 (82)
T d1fxla1 4 NLIVNYLPQNMTQEEFRSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN-GLRLQTKTIKVSYA 79 (82)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTT---SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHHHh---CCcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhC-CCEECCEEEEEEEe
Confidence 49999999999999999999999 999999999987 699999999999999999999998 79999999999998
Q ss_pred CC
Q 035741 81 KR 82 (890)
Q Consensus 81 ~~ 82 (890)
+|
T Consensus 80 kP 81 (82)
T d1fxla1 80 RP 81 (82)
T ss_dssp CC
T ss_pred eC
Confidence 76
|
| >d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
| >d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} | Back information, alignment and structure |
|---|
| >d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
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| >d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} | Back information, alignment and structure |
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| >d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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