Citrus Sinensis ID: 035828
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 781 | 2.2.26 [Sep-21-2011] | |||||||
| O49680 | 951 | Pentatricopeptide repeat- | yes | no | 0.997 | 0.819 | 0.506 | 0.0 | |
| Q9SVH0 | 774 | Pentatricopeptide repeat- | no | no | 0.850 | 0.857 | 0.305 | 1e-103 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.950 | 0.697 | 0.295 | 1e-102 | |
| Q9CA56 | 895 | Pentatricopeptide repeat- | no | no | 0.970 | 0.846 | 0.304 | 1e-101 | |
| Q0WN60 | 970 | Pentatricopeptide repeat- | no | no | 0.892 | 0.718 | 0.304 | 1e-101 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.891 | 0.789 | 0.310 | 8e-98 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.714 | 0.640 | 0.330 | 1e-97 | |
| O80647 | 836 | Pentatricopeptide repeat- | no | no | 0.952 | 0.889 | 0.303 | 2e-96 | |
| Q9M9E2 | 866 | Pentatricopeptide repeat- | no | no | 0.729 | 0.658 | 0.330 | 1e-95 | |
| Q9C507 | 787 | Putative pentatricopeptid | no | no | 0.836 | 0.829 | 0.324 | 3e-94 |
| >sp|O49680|PP324_ARATH Pentatricopeptide repeat-containing protein At4g19220, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E2 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/811 (50%), Positives = 554/811 (68%), Gaps = 32/811 (3%)
Query: 2 GFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFF 61
G L L TS+ LLT Y SS LF E KDV+ WN+MITA +N + + F
Sbjct: 117 GLLQDLATSSKLLTFYGRTGELVSSSCLFDELKEKDVIVWNSMITALNQNGRYIAAVGLF 176
Query: 62 GEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121
EM+ +G FDSTTLL+ SAL+ ++ ++ ++HCL+I+ G++ DSSLCN +N+YAK
Sbjct: 177 IEMIHKGNEFDSTTLLLAASALSSLHLSRKCSMLHCLAIETGLVGDSSLCNALMNLYAKG 236
Query: 122 GDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAV 181
+L+S+EC F+ M D VSWNTIM+ CL N +P K L YF+ M SG++AD V+ S +
Sbjct: 237 ENLSSAECVFTHMEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQEADTVTFSCVI 296
Query: 182 AASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKD 241
+A + + EL+ G+ +H L IK GY +VSV NS+ISMYS+CGD EAAE F + C+D
Sbjct: 297 SACSSIEELTLGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAAETVFEELVCRD 356
Query: 242 VVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVH 301
V+S NAI++GFA NG FEEAF +L++MQ + ++PDIATVV++ S+C D REGR+VH
Sbjct: 357 VISSNAILNGFAANGMFEEAFGILNQMQSVDKIQPDIATVVSITSICGDLSFSREGRAVH 416
Query: 302 GYAIR-RLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------ 354
GY +R + L ++NS++D Y K ++AELLF DLVSWNSMIS
Sbjct: 417 GYTVRMEMQSRALEVINSVIDMYGKCGLTTQAELLFKT-TTHRDLVSWNSMISAFSQNGF 475
Query: 355 ------LFKEML--YLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGV 406
LFKE++ Y CS+FS ST+LAIL SC+S +SL FGKS+HCW KLGF +N +
Sbjct: 476 THKAKNLFKEVVSEYSCSKFSLSTVLAILTSCDSSDSLIFGKSVHCWLQKLGFGDNMLSA 535
Query: 407 NALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQN 466
N++++MYI C DL +AF L+ +S D + WN VI C +GH E+++ F++M+++
Sbjct: 536 NSVINMYIGCRDLTSAFLRLETMSETRDLTSWNSVISGCASSGHHLESLRAFQAMSREGK 595
Query: 467 ASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSAS 526
D +TL+ ISA GNL L +G+ HGLA+KSL LDT++QN LITMYGRC+DI+SA
Sbjct: 596 IRHDLITLLGTISASGNLGLVLQGRCFHGLAIKSLRELDTQLQNTLITMYGRCKDIESAV 655
Query: 527 TVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLR 586
VF + NLC+WNC+ISA SQNKA +LFR+L+ EPNEI+ V +LSA TQLG
Sbjct: 656 KVFGLISDPNLCSWNCVISALSQNKAGREVFQLFRNLKLEPNEITFVGLLSASTQLGSTS 715
Query: 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNC---------------KSNAAWSSMISAYG 631
+G Q H H+ GFQ N F+S+AL+DMYS+C S +AW+S+ISA+G
Sbjct: 716 YGMQAHCHLIRRGFQANPFVSAALVDMYSSCGMLETGMKVFRNSGVNSISAWNSVISAHG 775
Query: 632 YHGKGWEAIELFHEM-CNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE 690
+HG G +A+ELF E+ NS + P KSS ISLLSACSHSG +DEGL YY M E++ V+P
Sbjct: 776 FHGMGEKAMELFKELSSNSEMEPNKSSFISLLSACSHSGFIDEGLSYYKQMEEKFGVKPV 835
Query: 691 TEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLF 750
TEH V IVDMLGR+GKL+EAYEFI + K GVWGA+LSAC++HGDTK+GK+VAE+LF
Sbjct: 836 TEHRVWIVDMLGRAGKLREAYEFITGIGEPQKAGVWGALLSACNYHGDTKLGKEVAEVLF 895
Query: 751 KLEPENVGYYISLSNMYVALGRWKDAVEIGK 781
++EP+N YYISL+N YV LG W++AV + K
Sbjct: 896 EMEPDNASYYISLANTYVGLGGWEEAVRLRK 926
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 230/754 (30%), Positives = 386/754 (51%), Gaps = 90/754 (11%)
Query: 87 NCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGD----------------------- 123
C G+V+H ++ GM +D+ LCN +++Y +CGD
Sbjct: 20 RCKLSGKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFL 79
Query: 124 --------LNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNV 175
L + F GM D VSWN ++S + + EK L+ ++ M G
Sbjct: 80 TFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRF 139
Query: 176 SLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDI-EAAERAF 234
+L+S ++A + + + +G H + +K G + + +V N+L+SMY++CG I + R F
Sbjct: 140 TLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVG--NALLSMYAKCGFIVDYGVRVF 197
Query: 235 WGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCA----- 289
++ + VS+ A+I G A K EA + M + V+ D + ++S+ A
Sbjct: 198 ESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLM-CEKGVQVDSVCLSNILSISAPREGC 256
Query: 290 DSLLL----REGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDL 345
DSL G+ +H A+R G DL + NSL++ Y+K+ ++ AEL+F A P ++
Sbjct: 257 DSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIF-AEMPEVNV 315
Query: 346 VSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIG 405
VSWN MI G +E S +S+EF + GF N +
Sbjct: 316 VSWNIMIVGFGQEY-------------------RSDKSVEFLTRMR----DSGFQPNEVT 352
Query: 406 VNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQ 465
+++ GD+ + I S S WN ++ + H++EAI F+ M Q Q
Sbjct: 353 CISVLGACFRSGDVETGRRIFSSIPQPS-VSAWNAMLSGYSNYEHYEEAISNFRQM-QFQ 410
Query: 466 NASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSA 525
N PD TL ++S+C L GK +HG+ +++ + ++ + + LI +Y C ++ +
Sbjct: 411 NLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEIS 470
Query: 526 STVFESCYN-CNLCTWNCMISAFSQNKAEVRALELFRHLEFE----PNEISIVSILSACT 580
+F+ C N ++ WN MIS F N + +AL LFR + PNE S ++LS+C+
Sbjct: 471 ECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCS 530
Query: 581 QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC---------------KSNAAWSS 625
+L L HG+Q HG V G+ +SF+ +AL DMY C K+ W+
Sbjct: 531 RLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNE 590
Query: 626 MISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEY 685
MI YG++G+G EA+ L+ +M +SG +P + +S+L+ACSHSGLV+ GL+ ++M +
Sbjct: 591 MIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIH 650
Query: 686 DVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQV 745
+ PE +H++CIVD LGR+G+L++A + + P + +W +LS+C HGD + ++V
Sbjct: 651 GIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLARRV 710
Query: 746 AELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779
AE L +L+P++ Y+ LSN Y +L +W D+ +
Sbjct: 711 AEKLMRLDPQSSAAYVLLSNTYSSLRQWDDSAAL 744
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 235/794 (29%), Positives = 398/794 (50%), Gaps = 52/794 (6%)
Query: 26 SLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSAL-- 83
+ +F E + + TWN MI + F MV E + + T ++ A
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198
Query: 84 --TQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVS 141
+ ++Q +H + G+ + +CN +++Y++ G ++ + F G+ D S
Sbjct: 199 GSVAFDVVEQ---IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS 255
Query: 142 WNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGI 201
W ++SG N + + F +M G + SS ++A + L G+ +H L +
Sbjct: 256 WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL 315
Query: 202 KLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEA 261
KLG+ YV N+L+S+Y G++ +AE F M+ +D V++N +I+G + G E+A
Sbjct: 316 KLGFSSDTYV--CNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 373
Query: 262 FDLLHEMQLMRSVEPDIATVVTLISLC-ADSLLLREGRSVHGYAIRRLLGYDLLMMNSLM 320
+L M L +EPD T+ +L+ C AD L R G+ +H Y + + + +L+
Sbjct: 374 MELFKRMHL-DGLEPDSNTLASLVVACSADGTLFR-GQQLHAYTTKLGFASNNKIEGALL 431
Query: 321 DFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------------LFKEMLY---LCSQ 365
+ Y+K + A L + + ++V WN M+ +F++M + +Q
Sbjct: 432 NLYAKCADIETA-LDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 490
Query: 366 FSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSL 425
+++ + IL +C LE G+ IH +K F N + L+ MY G L A+ +
Sbjct: 491 YTYPS---ILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDI 547
Query: 426 LQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLE 485
L R + D W +I TQ +A+ TF+ M + S D V L N +SAC L+
Sbjct: 548 LIRFA-GKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS-DEVGLTNAVSACAGLQ 605
Query: 486 LAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMIS 545
EG+ +H A S D QNAL+T+Y RC I+ + FE + WN ++S
Sbjct: 606 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVS 665
Query: 546 AFSQNKAEVRALELFRHLEFEP---NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQE 602
F Q+ AL +F + E N + S + A ++ ++ GKQ+H + G+
Sbjct: 666 GFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDS 725
Query: 603 NSFISSALLDMYSNC---------------KSNAAWSSMISAYGYHGKGWEAIELFHEMC 647
+ + +AL+ MY+ C K+ +W+++I+AY HG G EA++ F +M
Sbjct: 726 ETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMI 785
Query: 648 NSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKL 707
+S +RP +++ +LSACSH GLVD+G+ Y+ +M EY + P+ EH+VC+VDML R+G L
Sbjct: 786 HSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLL 845
Query: 708 QEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMY 767
A EFI+ +PI+P VW +LSAC H + ++G+ A L +LEPE+ Y+ LSN+Y
Sbjct: 846 SRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLY 905
Query: 768 VALGRWKDAVEIGK 781
+W DA ++ +
Sbjct: 906 AVSKKW-DARDLTR 918
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 246/807 (30%), Positives = 397/807 (49%), Gaps = 49/807 (6%)
Query: 10 STSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGI 69
+ SLL+ YSN + LF DVV+ N MI+ ++R L FF +M G
Sbjct: 87 TKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMHFLGF 146
Query: 70 RFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSEC 129
+ + ++SA + + +V C +IK G + + +++++K +
Sbjct: 147 EANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYK 206
Query: 130 TFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGE 189
F A+ WNTI++G L N F EM ++ D+ + SS +AA A L +
Sbjct: 207 VFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACASLEK 266
Query: 190 LSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAII 249
L +GKV+ A IK G ED V V +++ +Y++CG + A F + VVSW ++
Sbjct: 267 LRFGKVVQARVIKCGAED---VFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVML 323
Query: 250 DGFALNGKFEEAFDLLHEMQLMR--SVEPDIATVVTLISLCADSLLLREGRSVHGYAIRR 307
G+ K +AF L + MR VE + TV ++IS C ++ E VH + +
Sbjct: 324 SGYT---KSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKS 380
Query: 308 LLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------------L 355
D + +L+ YSKS + +E +F + + N MI+ L
Sbjct: 381 GFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRL 440
Query: 356 FKEML---YLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHM 412
F ML +FS +LL++L + L GK +H + LK G + ++L +
Sbjct: 441 FTRMLQEGLRTDEFSVCSLLSVL------DCLNLGKQVHGYTLKSGLVLDLTVGSSLFTL 494
Query: 413 YINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSV 472
Y CG L ++ L Q I D +CW +I + G+ +EAI F M SPD
Sbjct: 495 YSKCGSLEESYKLFQGIPFK-DNACWASMISGFNEYGYLREAIGLFSEMLDD-GTSPDES 552
Query: 473 TLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESC 532
TL V++ C + GK +HG L++ + + +AL+ MY +C +K A V++
Sbjct: 553 TLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRL 612
Query: 533 YNCNLCTWNCMISAFSQNKAEVRALELFRHL---EFEPNEISIVSILSACTQLGVLRHGK 589
+ + + +IS +SQ+ LFR + F + +I SIL A G
Sbjct: 613 PELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGA 672
Query: 590 QIHGHVFHLGFQENSFISSALLDMYSN-------CKSNA--------AWSSMISAYGYHG 634
Q+H ++ +G + S+LL MYS CK+ + AW+++I++Y HG
Sbjct: 673 QVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHG 732
Query: 635 KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHH 694
K EA+++++ M G +P K + + +LSACSH GLV+E + N+M+++Y + PE H+
Sbjct: 733 KANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHY 792
Query: 695 VCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEP 754
VC+VD LGRSG+L+EA FI N+ I+P VWG +L+AC HG+ ++GK A+ +LEP
Sbjct: 793 VCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEP 852
Query: 755 ENVGYYISLSNMYVALGRWKDAVEIGK 781
+ G YISLSN+ +G W + E K
Sbjct: 853 SDAGAYISLSNILAEVGEWDEVEETRK 879
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 227/746 (30%), Positives = 394/746 (52%), Gaps = 49/746 (6%)
Query: 75 TLLIIVSALTQMNCLKQGRVVHCL-SIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSG 133
L +++ A + ++ GR +H L S + D LC + MYA CG + S F
Sbjct: 86 ALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDA 145
Query: 134 MHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQ-ADNVSLSSAVAASACLGELSY 192
+ + WN ++S N ++ L F EM + + D+ + + A A + ++
Sbjct: 146 LRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGI 205
Query: 193 GKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGF 252
G +H L +K G + +V N+L+S Y G + A + F M +++VSWN++I F
Sbjct: 206 GLAVHGLVVKTGLVEDVFVG--NALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVF 263
Query: 253 ALNGKFEEAFDLLHEMQLMR---SVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLL 309
+ NG EE+F LL EM + PD+AT+VT++ +CA + G+ VHG+A++ L
Sbjct: 264 SDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRL 323
Query: 310 GYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------------LFK 357
+L++ N+LMD YSK ++ A+++F N +VSWN+M+ G + +
Sbjct: 324 DKELVLNNALMDMYSKCGCITNAQMIFKMNNNKN-VVSWNTMVGGFSAEGDTHGTFDVLR 382
Query: 358 EMLYLCSQFSFS--TLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYIN 415
+ML T+L +P C L K +HC+ LK F N + NA + Y
Sbjct: 383 QMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAK 442
Query: 416 CGDLVAAFSLLQRISH---NSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSV 472
CG L S QR+ H + + WN +I Q+ + ++ M + PDS
Sbjct: 443 CGSL----SYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQM-KISGLLPDSF 497
Query: 473 TLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESC 532
T+ +++SAC L+ GK +HG +++ + D V +++++Y C ++ + +F++
Sbjct: 498 TVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAM 557
Query: 533 YNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNE---ISIVSILSACTQLGVLRHGK 589
+ +L +WN +I+ + QN RAL +FR + + IS++ + AC+ L LR G+
Sbjct: 558 EDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGR 617
Query: 590 QIHGHVFHLGFQENSFISSALLDMYSNC---------------KSNAAWSSMISAYGYHG 634
+ H + ++++FI+ +L+DMY+ KS A+W++MI YG HG
Sbjct: 618 EAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHG 677
Query: 635 KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHH 694
EAI+LF EM +G P + + +L+AC+HSGL+ EGL+Y + M + ++P +H+
Sbjct: 678 LAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHY 737
Query: 695 VCIVDMLGRSGKLQEAYEFI-KNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLE 753
C++DMLGR+G+L +A + + + + G+W ++LS+C H + +MG++VA LF+LE
Sbjct: 738 ACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELE 797
Query: 754 PENVGYYISLSNMYVALGRWKDAVEI 779
PE Y+ LSN+Y LG+W+D ++
Sbjct: 798 PEKPENYVLLSNLYAGLGKWEDVRKV 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (919), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 228/734 (31%), Positives = 377/734 (51%), Gaps = 38/734 (5%)
Query: 79 IVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCAD 138
I AL+ + L + R +H L I G+ + ++ Y+ + SS F + A
Sbjct: 10 ISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAK 69
Query: 139 TVS-WNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIH 197
V WN+I+ N + L ++ ++ S D + S + A A L + G +++
Sbjct: 70 NVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY 129
Query: 198 ALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGK 257
+ +G+E +V N+L+ MYS+ G + A + F M +D+VSWN++I G++ +G
Sbjct: 130 EQILDMGFESDLFVG--NALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGY 187
Query: 258 FEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMN 317
+EEA ++ HE++ + PD TV +++ + L++++G+ +HG+A++ + +++ N
Sbjct: 188 YEEALEIYHELK-NSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNN 246
Query: 318 SLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFK-EM------LYL--CSQFS- 367
L+ Y K + A +F+ + + D VS+N+MI G K EM ++L QF
Sbjct: 247 GLVAMYLKFRRPTDARRVFDEM-DVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKP 305
Query: 368 -FSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLL 426
T+ ++L +C L K I+ + LK GF + N L+ +Y CGD++ A +
Sbjct: 306 DLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVF 365
Query: 427 QRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNL-E 485
+ DT WN +I Q+G EA+K FK M + + D +T + +IS L +
Sbjct: 366 NSM-ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQA-DHITYLMLISVSTRLAD 423
Query: 486 LAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMIS 545
L F GK LH +KS + +D V NALI MY +C ++ + +F S + TWN +IS
Sbjct: 424 LKF-GKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVIS 482
Query: 546 A---FSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQE 602
A F ++ R E P+ + + L C L R GK+IH + G++
Sbjct: 483 ACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYES 542
Query: 603 NSFISSALLDMYSNC---------------KSNAAWSSMISAYGYHGKGWEAIELFHEMC 647
I +AL++MYS C + W+ MI AYG +G+G +A+E F +M
Sbjct: 543 ELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADME 602
Query: 648 NSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKL 707
SGI P I+++ ACSHSGLVDEGL + M Y + P EH+ C+VD+L RS K+
Sbjct: 603 KSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKI 662
Query: 708 QEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMY 767
+A EFI+ +PI+P +W ++L AC GD + ++V+ + +L P++ GY I SN Y
Sbjct: 663 SKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAY 722
Query: 768 VALGRWKDAVEIGK 781
AL +W I K
Sbjct: 723 AALRKWDKVSLIRK 736
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (918), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 196/593 (33%), Positives = 318/593 (53%), Gaps = 35/593 (5%)
Query: 220 MYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIA 279
MY+ CGD++ A R F + + + WN +++ A +G F + L +M + VE D
Sbjct: 138 MYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKM-MSSGVEMDSY 196
Query: 280 TVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAI 339
T + + + G +HG+ ++ G + NSL+ FY K+ + A +F+ +
Sbjct: 197 TFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEM 256
Query: 340 APMNDLVSWNSMISG------------LFKEMLYLCSQFSFSTLLAILPSCNSPESLEFG 387
D++SWNS+I+G +F +ML + +T++++ C + G
Sbjct: 257 TE-RDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315
Query: 388 KSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQ 447
+++H +K FS N L+ MY CGDL +A ++ + +S S S + +I +
Sbjct: 316 RAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS-YTSMIAGYAR 374
Query: 448 NGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTR 507
G EA+K F+ M +++ SPD T+ V++ C L EGK +H ++ +G D
Sbjct: 375 EGLAGEAVKLFEEM-EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIF 433
Query: 508 VQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL---- 563
V NAL+ MY +C ++ A VF ++ +WN +I +S+N AL LF L
Sbjct: 434 VSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK 493
Query: 564 EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC------ 617
F P+E ++ +L AC L G++IHG++ G+ + ++++L+DMY+ C
Sbjct: 494 RFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLA 553
Query: 618 ---------KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHS 668
K +W+ MI+ YG HG G EAI LF++M +GI + S +SLL ACSHS
Sbjct: 554 HMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHS 613
Query: 669 GLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGA 728
GLVDEG +++N M E + P EH+ CIVDML R+G L +AY FI+N+PI P +WGA
Sbjct: 614 GLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGA 673
Query: 729 MLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781
+L C H D K+ ++VAE +F+LEPEN GYY+ ++N+Y +W+ + K
Sbjct: 674 LLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRK 726
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80647|PP195_ARATH Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana GN=PCMP-E33 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 239/788 (30%), Positives = 384/788 (48%), Gaps = 44/788 (5%)
Query: 7 LPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVE 66
L L+ AYS + S +F + VV WN+MI L FFG M E
Sbjct: 33 LKPHNQLINAYSLFQRQDLSRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSE 92
Query: 67 E-GIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLN 125
E GI D + + A K+G +H L + G+ +D + V MY K DL
Sbjct: 93 EKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLV 152
Query: 126 SSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASA 185
S+ F MH D V+WNT++SG N LL F +M D+VSL + + A +
Sbjct: 153 SARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVS 212
Query: 186 CLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSW 245
L + + +H L IK G+ + ++ LI MY C D+ AAE F + KD SW
Sbjct: 213 KLEKSDVCRCLHGLVIKKGF----IFAFSSGLIDMYCNCADLYAAESVFEEVWRKDESSW 268
Query: 246 NAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLL--LREGRSVHGY 303
++ +A NG FEE +L LMR+ + + V +L A + + L +G ++H Y
Sbjct: 269 GTMMAAYAHNGFFEEVLELF---DLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDY 325
Query: 304 AIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG--------- 354
A+++ L D+ + SLM YSK L AE LF I D+VSW++MI+
Sbjct: 326 AVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIED-RDVVSWSAMIASYEQAGQHDE 384
Query: 355 ---LFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMH 411
LF++M+ + + + TL ++L C + GKSIHC+ +K + A++
Sbjct: 385 AISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVIS 444
Query: 412 MYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS 471
MY CG A +R+ D +N + TQ G +A +K+M + PDS
Sbjct: 445 MYAKCGRFSPALKAFERLPIK-DAVAFNALAQGYTQIGDANKAFDVYKNM-KLHGVCPDS 502
Query: 472 VTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFES 531
T+V ++ C G ++G +K + V +ALI M+ +C + +A +F+
Sbjct: 503 RTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTKCDALAAAIVLFDK 562
Query: 532 C-YNCNLCTWNCMISAFSQNKAEVRALELFRHLE---FEPNEISIVSILSACTQLGVLRH 587
C + + +WN M++ + + A+ FR ++ F+PN ++ V+I+ A +L LR
Sbjct: 563 CGFEKSTVSWNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAVTFVNIVRAAAELSALRV 622
Query: 588 GKQIHGHVFHLGFQENSFISSALLDMYSNC---------------KSNAAWSSMISAYGY 632
G +H + GF + + ++L+DMY+ C K +W++M+SAY
Sbjct: 623 GMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEISNKYIVSWNTMLSAYAA 682
Query: 633 HGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETE 692
HG A+ LF M + ++P S +S+LSAC H+GLV+EG + + M E + + E E
Sbjct: 683 HGLASCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEGKRIFEEMGERHKIEAEVE 742
Query: 693 HHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKL 752
H+ C+VD+LG++G EA E ++ + ++ GVWGA+L++ H + + L KL
Sbjct: 743 HYACMVDLLGKAGLFGEAVEMMRRMRVKTSVGVWGALLNSSRMHCNLWLSNAALCQLVKL 802
Query: 753 EPENVGYY 760
EP N +Y
Sbjct: 803 EPLNPSHY 810
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (900), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 202/612 (33%), Positives = 328/612 (53%), Gaps = 42/612 (6%)
Query: 198 ALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGK 257
+LG++LG N+ ++M+ + G++ A F M+ +++ SWN ++ G+A G
Sbjct: 126 SLGVELG----------NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGY 175
Query: 258 FEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMN 317
F+EA L H M + V+PD+ T ++ C L G+ VH + +R D+ ++N
Sbjct: 176 FDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVN 235
Query: 318 SLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFK--------EMLYLCSQFSFS 369
+L+ Y K + A LLF+ + P D++SWN+MISG F+ E+ + S
Sbjct: 236 ALITMYVKCGDVKSARLLFDRM-PRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVD 294
Query: 370 ----TLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSL 425
TL +++ +C G+ IH + + GF+ + N+L MY+N G A L
Sbjct: 295 PDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKL 354
Query: 426 LQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLE 485
R+ D W +I N +AI T++ M Q + PD +T+ V+SAC L
Sbjct: 355 FSRMERK-DIVSWTTMISGYEYNFLPDKAIDTYR-MMDQDSVKPDEITVAAVLSACATLG 412
Query: 486 LAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMIS 545
G LH LA+K+ + V N LI MY +C+ I A +F + N+ +W +I+
Sbjct: 413 DLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIA 472
Query: 546 AFSQNKAEVRALELFRHLE--FEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQEN 603
N AL R ++ +PN I++ + L+AC ++G L GK+IH HV G +
Sbjct: 473 GLRLNNRCFEALIFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLD 532
Query: 604 SFISSALLDMYSNC-KSNAAWSS-------------MISAYGYHGKGWEAIELFHEMCNS 649
F+ +ALLDMY C + N AWS +++ Y G+G +ELF M S
Sbjct: 533 DFLPNALLDMYVRCGRMNTAWSQFNSQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKS 592
Query: 650 GIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQE 709
+RP + + ISLL CS S +V +GL Y++ M E+Y V P +H+ C+VD+LGR+G+LQE
Sbjct: 593 RVRPDEITFISLLCGCSKSQMVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQE 651
Query: 710 AYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769
A++FI+ +P+ P P VWGA+L+AC H +G+ A+ +F+L+ ++VGYYI L N+Y
Sbjct: 652 AHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYAD 711
Query: 770 LGRWKDAVEIGK 781
G+W++ ++ +
Sbjct: 712 CGKWREVAKVRR 723
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (889), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 225/694 (32%), Positives = 357/694 (51%), Gaps = 41/694 (5%)
Query: 114 FVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCL-LYFREMGWSGEQA 172
+ YA G +SS F D+ + ++ + + + + LY R + + + +
Sbjct: 40 LIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQIS 99
Query: 173 DNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAER 232
V S A + LS G +H IK G +D + SL+ MY Q G++ AE+
Sbjct: 100 KFVFPSVLRACAGSREHLSVGGKVHGRIIKGGVDDDAVIE--TSLLCMYGQTGNLSDAEK 157
Query: 233 AFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSL 292
F GM +D+V+W+ ++ NG+ +A + M + VEPD T+++++ CA+
Sbjct: 158 VFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCM-VDDGVEPDAVTMISVVEGCAELG 216
Query: 293 LLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMI 352
LR RSVHG R++ D + NSL+ YSK L +E +F IA N VSW +MI
Sbjct: 217 CLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKN-AVSWTAMI 275
Query: 353 SGL------------FKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFS 400
S F EM+ + + TL ++L SC + GKS+H + ++
Sbjct: 276 SSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELD 335
Query: 401 NNTIGVN-ALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFK 459
N ++ AL+ +Y CG L ++L R+ + + WN +I G +A+ F+
Sbjct: 336 PNYESLSLALVELYAECGKLSDCETVL-RVVSDRNIVAWNSLISLYAHRGMVIQALGLFR 394
Query: 460 SMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRC 519
M Q+ PD+ TL + ISAC N L GK +HG +++ + D VQN+LI MY +
Sbjct: 395 QMVTQR-IKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVS-DEFVQNSLIDMYSKS 452
Query: 520 RDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFR---HLEFEPNEISIVSIL 576
+ SASTVF + ++ TWN M+ FSQN V A+ LF H E NE++ ++++
Sbjct: 453 GSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVI 512
Query: 577 SACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKS-NAAWS----------- 624
AC+ +G L GK +H + G ++ F +AL+DMY+ C NAA +
Sbjct: 513 QACSSIGSLEKGKWVHHKLIISGLKD-LFTDTALIDMYAKCGDLNAAETVFRAMSSRSIV 571
Query: 625 ---SMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNM 681
SMI+AYG HG+ AI F++M SG +P + +++LSAC HSG V+EG +YY N+
Sbjct: 572 SWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEG-KYYFNL 630
Query: 682 LEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKM 741
++ + V P +EH C +D+L RSG L+EAY IK +P VWG++++ C H +
Sbjct: 631 MKSFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDI 690
Query: 742 GKQVAELLFKLEPENVGYYISLSNMYVALGRWKD 775
K + L + ++ GYY LSN+Y G W++
Sbjct: 691 IKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWEE 724
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 781 | ||||||
| 225427607 | 828 | PREDICTED: pentatricopeptide repeat-cont | 0.997 | 0.940 | 0.636 | 0.0 | |
| 296085462 | 862 | unnamed protein product [Vitis vinifera] | 0.984 | 0.892 | 0.628 | 0.0 | |
| 356495279 | 944 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.817 | 0.576 | 0.0 | |
| 357484403 | 955 | Pentatricopeptide repeat-containing prot | 0.997 | 0.815 | 0.564 | 0.0 | |
| 297800128 | 919 | pentatricopeptide repeat-containing prot | 0.973 | 0.826 | 0.512 | 0.0 | |
| 223635620 | 951 | RecName: Full=Pentatricopeptide repeat-c | 0.997 | 0.819 | 0.506 | 0.0 | |
| 15234184 | 932 | pentatricopeptide repeat-containing prot | 0.973 | 0.815 | 0.498 | 0.0 | |
| 125529041 | 916 | hypothetical protein OsI_05121 [Oryza sa | 0.983 | 0.838 | 0.469 | 0.0 | |
| 20160775 | 916 | PPR-repeat protein-like [Oryza sativa Ja | 0.983 | 0.838 | 0.466 | 0.0 | |
| 413951361 | 917 | hypothetical protein ZEAMMB73_045792 [Ze | 0.956 | 0.814 | 0.454 | 0.0 |
| >gi|225427607|ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/807 (63%), Positives = 617/807 (76%), Gaps = 28/807 (3%)
Query: 2 GFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFF 61
G LAHLPTSTSLLTAYS + F SS ALF E +DV+ WNAMITA VEN+C + ++ F
Sbjct: 2 GALAHLPTSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLF 61
Query: 62 GEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121
E++ EG+ DSTTLLI+VSA + M L QGRV+H +S K G+++DS LCN ++MYAKC
Sbjct: 62 VELMGEGVGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKC 121
Query: 122 GDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAV 181
G+L+SSEC F GM D +SWN++M GC +NNYP+K L YF++M +S EQADNVSL+ AV
Sbjct: 122 GELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAV 181
Query: 182 AASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKD 241
+ASA LGELS+G+VIH GIKLGY+D + S NSLIS+YSQC DI+AAE F M KD
Sbjct: 182 SASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYKD 241
Query: 242 VVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVH 301
+VSWNA++DG ALN + EAFDLLHEMQL+ V+PD TVV +I LCA+ +LLREGR+VH
Sbjct: 242 IVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVH 301
Query: 302 GYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------- 354
G +RR +G D + NSL+D YSK + +AE +F AI P DLVSWN+MISG
Sbjct: 302 GLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAI-PERDLVSWNAMISGYSQNGHS 360
Query: 355 -----LFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNAL 409
LF+++L SQ S STLLAILPSC+S E L+FG+SIHCWQLKLGF+NN + VN+L
Sbjct: 361 REAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSL 420
Query: 410 MHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASP 469
M MYINCGDLVA FSLLQ +S +D CWN V+ CTQNGHF EA+K F M Q +
Sbjct: 421 MLMYINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCH 480
Query: 470 DSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVF 529
DSV L NVISACGNLEL F G SLHGLALK+LM D RVQNALITMYGRC +I++A +F
Sbjct: 481 DSVALFNVISACGNLELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARIIF 540
Query: 530 ESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGK 589
N NLC+WNCMISAFSQNK RALELF H+EFEPNEI+IV ILSACTQLGVLRHGK
Sbjct: 541 GFSCNRNLCSWNCMISAFSQNKDGRRALELFCHIEFEPNEITIVGILSACTQLGVLRHGK 600
Query: 590 QIHGHVFHLGFQENSFISSALLDMYSNC---------------KSNAAWSSMISAYGYHG 634
QIHGHV Q NSF+S+AL DMYSNC +S AAW+SMISA+G+H
Sbjct: 601 QIHGHVIRSRLQGNSFVSAALEDMYSNCGRLDTAFQIFQSSPERSVAAWNSMISAFGFHS 660
Query: 635 KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHH 694
G +AIELFHEM G RPTKS+ ISLLSACSHSGLV+EGL YY+NMLE ++V +TEHH
Sbjct: 661 NGGKAIELFHEMRECGTRPTKSTFISLLSACSHSGLVNEGLWYYSNMLELFNVEADTEHH 720
Query: 695 VCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEP 754
VC+VDMLGR+G+L EAYEFI+ +P QP+PGVWGA+LSACS+HGD KMG++VAELLF+LEP
Sbjct: 721 VCMVDMLGRAGRLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGREVAELLFELEP 780
Query: 755 ENVGYYISLSNMYVALGRWKDAVEIGK 781
ENVGYYISLSNMYVA GRWKDAVE+ +
Sbjct: 781 ENVGYYISLSNMYVAAGRWKDAVELRR 807
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085462|emb|CBI29194.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/795 (62%), Positives = 604/795 (75%), Gaps = 26/795 (3%)
Query: 2 GFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFF 61
G LAHLPTSTSLLTAYS + F SS ALF E +DV+ WNAMITA VEN+C + ++ F
Sbjct: 43 GALAHLPTSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLF 102
Query: 62 GEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121
E++ EG+ DSTTLLI+VSA + M L QGRV+H +S K G+++DS LCN ++MYAKC
Sbjct: 103 VELMGEGVGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKC 162
Query: 122 GDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAV 181
G+L+SSEC F GM D +SWN++M GC +NNYP+K L YF++M +S EQADNVSL+ AV
Sbjct: 163 GELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAV 222
Query: 182 AASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKD 241
+ASA LGELS+G+VIH GIKLGY+D + S NSLIS+YSQC DI+AAE F M KD
Sbjct: 223 SASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYKD 282
Query: 242 VVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVH 301
+VSWNA++DG ALN + EAFDLLHEMQL+ V+PD TVV +I LCA+ +LLREGR+VH
Sbjct: 283 IVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVH 342
Query: 302 GYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLY 361
G +RR +G D + NSL+D YSK + +AE ++ + LF+++L
Sbjct: 343 GLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHNGHSREAQH-----------LFRQLLQ 391
Query: 362 LCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVA 421
SQ S STLLAILPSC+S E L+FG+SIHCWQLKLGF+NN + VN+LM MYINCGDLVA
Sbjct: 392 SYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVA 451
Query: 422 AFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISAC 481
FSLLQ +S +D CWN V+ CTQNGHF EA+K F M Q + DSV L NVISAC
Sbjct: 452 CFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISAC 511
Query: 482 GNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWN 541
GNLEL F G SLHGLALK+LM D RVQNALITMYGRC +I++A +F N NLC+WN
Sbjct: 512 GNLELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWN 571
Query: 542 CMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQ 601
CMISAFSQNK RALELF H+EFEPNEI+IV ILSACTQLGVLRHGKQIHGHV Q
Sbjct: 572 CMISAFSQNKDGRRALELFCHIEFEPNEITIVGILSACTQLGVLRHGKQIHGHVIRSRLQ 631
Query: 602 ENSFISSALLDMYSNC---------------KSNAAWSSMISAYGYHGKGWEAIELFHEM 646
NSF+S+AL DMYSNC +S AAW+SMISA+G+H G +AIELFHEM
Sbjct: 632 GNSFVSAALEDMYSNCGRLDTAFQIFQSSPERSVAAWNSMISAFGFHSNGGKAIELFHEM 691
Query: 647 CNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGK 706
G RPTKS+ ISLLSACSHSGLV+EGL YY+NMLE ++V +TEHHVC+VDMLGR+G+
Sbjct: 692 RECGTRPTKSTFISLLSACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGRAGR 751
Query: 707 LQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766
L EAYEFI+ +P QP+PGVWGA+LSACS+HGD KMG++VAELLF+LEPENVGYYISLSNM
Sbjct: 752 LGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGREVAELLFELEPENVGYYISLSNM 811
Query: 767 YVALGRWKDAVEIGK 781
YVA GRWKDAVE+ +
Sbjct: 812 YVAAGRWKDAVELRR 826
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495279|ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/808 (57%), Positives = 588/808 (72%), Gaps = 36/808 (4%)
Query: 2 GFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFF 61
G LAHLPTSTSLLT YS F SS LF E N+D + WNA++ A +EN+C + + FF
Sbjct: 121 GALAHLPTSTSLLTIYSKAGDFTSSKGLFDEIQNRDAIAWNAIVAASLENKCYRIAMDFF 180
Query: 62 GEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121
+M++ FDSTTLL+IVSA M QGR +HC+SIK+GM+ D SL N V+MYAKC
Sbjct: 181 DKMIKAQTGFDSTTLLLIVSASLHMKNFDQGRAIHCVSIKSGMLVDISLGNALVDMYAKC 240
Query: 122 GDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAV 181
GDL+SSEC + + C D VSWN+IM G L+N +PEK L YF+ M +S E ADNVSL A+
Sbjct: 241 GDLSSSECLYEEIECKDAVSWNSIMRGSLYNRHPEKALCYFKRMSFSEETADNVSLCCAI 300
Query: 182 AASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKD 241
+AS+ LGELS+G+ +H LGIKLGY+ +VSV NSLIS+YSQC DI+AAE F + KD
Sbjct: 301 SASSSLGELSFGQSVHGLGIKLGYKS--HVSVANSLISLYSQCEDIKAAETLFREIALKD 358
Query: 242 VVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVH 301
+VSWNA+++GFA NGK +E FDLL +MQ + +PDI T++TL+ LCA+ +L REGR++H
Sbjct: 359 IVSWNAMMEGFASNGKIKEVFDLLVQMQKVGFFQPDIVTLITLLPLCAELMLSREGRTIH 418
Query: 302 GYAIRRLLGYD-LLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------ 354
GYAIRR + D ++++NSL+ YSK N + KAELLFN+ A D VSWN+MISG
Sbjct: 419 GYAIRRQMISDHVMLLNSLIGMYSKCNLVEKAELLFNSTAE-KDTVSWNAMISGYSHNRY 477
Query: 355 ------LFKEMLYLCSQFSFSTLLAILPSCNS--PESLEFGKSIHCWQLKLGFSNNTIGV 406
LF EML S ST+ AIL SCNS S+ FGKS+HCWQLK GF N+ + +
Sbjct: 478 SEEAQNLFTEMLRWGPNCSSSTVFAILSSCNSLNINSIHFGKSVHCWQLKSGFLNHILLI 537
Query: 407 NALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQN 466
N LMHMYINCGDL A+FS+L S +D + WN +IV C + HF+EA++TF M Q+
Sbjct: 538 NILMHMYINCGDLTASFSILHENSALADIASWNTLIVGCVRCDHFREALETFNLMRQEPP 597
Query: 467 ASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSAS 526
+ DS+TLV+ +SAC NLEL GKSLHGL +KS +G DTRVQN+LITMY RCRDI SA
Sbjct: 598 LNYDSITLVSALSACANLELFNLGKSLHGLTVKSPLGSDTRVQNSLITMYDRCRDINSAK 657
Query: 527 TVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLR 586
VF+ NLC+WNCMISA S N+ ALELF +L+FEPNEI+I+ +LSACTQ+GVLR
Sbjct: 658 VVFKFFSTPNLCSWNCMISALSHNRESREALELFLNLQFEPNEITIIGVLSACTQIGVLR 717
Query: 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNC---------------KSNAAWSSMISAYG 631
HGKQ+H HVF Q+NSFIS+AL+D+YSNC KS +AW+SMISAYG
Sbjct: 718 HGKQVHAHVFRTCIQDNSFISAALIDLYSNCGRLDTALQVFRHAKEKSESAWNSMISAYG 777
Query: 632 YHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET 691
YHGKG +AI+LFHEMC SG R +KS+ +SLLSACSHSGLV++GL +Y MLE Y V+PET
Sbjct: 778 YHGKGEKAIKLFHEMCESGARVSKSTFVSLLSACSHSGLVNQGLWFYECMLERYGVQPET 837
Query: 692 EHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFK 751
EH V +VDMLGRSG+L EAYEF K GVWGA+LSAC++HG+ K+GK++A+ LF+
Sbjct: 838 EHQVYVVDMLGRSGRLDEAYEFAKGC---DSSGVWGALLSACNYHGELKLGKKIAQYLFQ 894
Query: 752 LEPENVGYYISLSNMYVALGRWKDAVEI 779
LEP+NVG+YISLSNMYVA G WKDA E+
Sbjct: 895 LEPQNVGHYISLSNMYVAAGSWKDATEL 922
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357484403|ref|XP_003612489.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355513824|gb|AES95447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/809 (56%), Positives = 585/809 (72%), Gaps = 30/809 (3%)
Query: 2 GFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFF 61
G LA+LPTSTSL T YS F SS LF N+DV+ WNA+I+A +EN+C + FF
Sbjct: 127 GALAYLPTSTSLFTLYSKAGDFTSSRVLFEHIHNRDVIAWNAIISASLENKCYRTAVEFF 186
Query: 62 GEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121
+M+++ RFDSTTLL++VS L+ + QGRV+HC+SIK+GM+ D SLCN +NMYAKC
Sbjct: 187 QKMIKDQTRFDSTTLLLVVSTLSHLKNFGQGRVIHCVSIKSGMLVDISLCNALINMYAKC 246
Query: 122 GDLNSS--ECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSS 179
GD+NSS EC F M D VSWN+IM GCL+N EK L YFR M +S E+AD+VSLS
Sbjct: 247 GDVNSSDSECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSLCYFRRMNFSEERADHVSLSC 306
Query: 180 AVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTC 239
A++A + LGEL++G+ IH GIKLGY+D+ +VSV NSLIS+YSQC ++ AE F M
Sbjct: 307 AISACSSLGELAFGECIHGQGIKLGYKDNSFVSVANSLISLYSQCEAVDVAETVFREMAY 366
Query: 240 KDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRS 299
KD+VSWNA+++G+A N EAFDL+ EMQ +PDI T+ T++ LCA+ +L REGR+
Sbjct: 367 KDIVSWNAMMEGYASNENIHEAFDLMVEMQTTGCFQPDIVTLTTMLPLCAELMLYREGRT 426
Query: 300 VHGYAIRRLLGYD-LLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG---- 354
+HGYAIRR + D L + N L+D YSK N + KAELLF++ A + DLVSWN+MISG
Sbjct: 427 IHGYAIRRHMVPDHLPLRNGLIDMYSKCNVVEKAELLFHSTAQI-DLVSWNAMISGYSQN 485
Query: 355 --------LFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGV 406
LFKE+L S ST+ AIL SCNS SL FGKS+H WQLK GF N+T+ V
Sbjct: 486 KYYEKAQNLFKELLCCGQNCSSSTVFAILSSCNSANSLNFGKSVHIWQLKSGFLNHTLLV 545
Query: 407 NALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQN 466
N+LM MYIN GDL + FS+LQ S +D + WN +IV C + FQEA++TF M Q +
Sbjct: 546 NSLMQMYINSGDLTSGFSILQENSSIADIASWNTIIVGCVRGDQFQEALETFMLMRQGPS 605
Query: 467 ASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSAS 526
+ DS+TLVNV+SA N+EL +GKSLH LALKS G DTRVQN+LITMY RCRDI SA
Sbjct: 606 FNYDSITLVNVLSAVANIELLNQGKSLHSLALKSPFGSDTRVQNSLITMYDRCRDINSAR 665
Query: 527 TVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLR 586
VF+ NLCTWNCMISA S NK ALELFRHL+F+PNE +IVS+LSACT++GVL
Sbjct: 666 KVFKFHSISNLCTWNCMISALSHNKESREALELFRHLQFKPNEFTIVSVLSACTRIGVLI 725
Query: 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNC--------------KSNAAWSSMISAYGY 632
HGKQ+HG+ F G+Q+NSFIS+AL+D+YS C KS +AW+SMI+AYG
Sbjct: 726 HGKQVHGYTFRYGYQQNSFISAALVDLYSTCGRLDNAVKVFRHSQKSESAWNSMIAAYGN 785
Query: 633 HGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETE 692
HG G +AIELFHEMC+ GI+ TKS+ +SLLSACSHSGLV++GLQYY MLE+Y ++PE E
Sbjct: 786 HGNGEKAIELFHEMCDLGIKVTKSTFVSLLSACSHSGLVNQGLQYYECMLEKYGIKPEAE 845
Query: 693 HHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKL 752
H V +V+ML RSG++ EAY+F K L GVWG +LS C++HG+ ++GK+VAE LF++
Sbjct: 846 HQVYVVNMLARSGRIDEAYQFTKGLQSNASSGVWGMLLSVCNYHGELELGKKVAEKLFEM 905
Query: 753 EPENVGYYISLSNMYVALGRWKDAVEIGK 781
EP+NVGYYISL+NMYVA G WKDA ++ +
Sbjct: 906 EPQNVGYYISLANMYVAAGSWKDATDLRQ 934
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297800128|ref|XP_002867948.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297313784|gb|EFH44207.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/812 (51%), Positives = 549/812 (67%), Gaps = 52/812 (6%)
Query: 2 GFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFF 61
GFL L TS+ LLT Y SSL LF E KDV+ WN+MIT +N + + F
Sbjct: 107 GFLQDLATSSKLLTIYGRTGDLVSSLGLFGELKEKDVIVWNSMITCLNQNGRYIAAVGLF 166
Query: 62 GEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121
EM+ +G FDSTTLL+ VSAL+ ++ K+ +VHCL+I+ G+++DSSLCN +N+YAK
Sbjct: 167 VEMIHKGNEFDSTTLLLAVSALSSLHLSKKCPMVHCLAIETGLVSDSSLCNALMNLYAKG 226
Query: 122 GDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAV 181
DL+S+EC F+ M D VSWNTIM+ CL N YP L+YF+ M SG++ADNV+ S +
Sbjct: 227 EDLSSAECVFTHMEHRDIVSWNTIMTKCLANGYPRNSLIYFKSMIGSGQEADNVTFSCVI 286
Query: 182 AASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKD 241
+A +CL EL G+ +H L IK GY +VSV NS+ISMYS+CGDIEAAE F + CKD
Sbjct: 287 SACSCLEELPLGESLHGLVIKSGYSPEAHVSVANSIISMYSKCGDIEAAETVFEELLCKD 346
Query: 242 VVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVH 301
V+SWNAI++G + NG FEEAF +L EMQ + ++PDI+TVV++ S+C D L REGR++H
Sbjct: 347 VISWNAILNGLSANGMFEEAFGILKEMQSVDKIQPDISTVVSITSICGDFCLSREGRAIH 406
Query: 302 GYAIRR-LLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------ 354
GY +RR + L ++NS++D Y K ++AE LF DLVSWNSMIS
Sbjct: 407 GYTVRREMQSRALEVINSVIDMYGKCGLTTQAEFLFKT-TTHRDLVSWNSMISAFAQNGF 465
Query: 355 ------LFKEML--YLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGV 406
LF+E++ Y CS+FS ST+LAIL SC+S +SL FGKS+HCW KL
Sbjct: 466 TQEAKNLFREVVSEYTCSKFSLSTVLAILTSCDSSDSLIFGKSVHCWLQKL--------- 516
Query: 407 NALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQN 466
GDL +AF LL+ I D + WN VI C +GH E+++ F++M+++
Sbjct: 517 ----------GDLTSAFLLLEMIFETRDLTSWNSVIYGCASSGHHLESLRAFQAMSREGK 566
Query: 467 ASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSAS 526
D +TL+ ISA GNL L +G+ LHGLA+KSL LDT++QN LITMYGRC+D +SA
Sbjct: 567 IRHDLITLLGTISASGNLRLVLQGRCLHGLAIKSLRELDTQLQNTLITMYGRCKDTESAV 626
Query: 527 TVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLR 586
VF + NLC+WNC+ISA SQNKA +LFR+L+ EPNEI+ V +LSA TQLG
Sbjct: 627 KVFGLISDPNLCSWNCVISALSQNKAGREVFQLFRNLKLEPNEITFVGLLSASTQLGSTS 686
Query: 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNC---------------KSNAAWSSMISAYG 631
+G Q H H+ GFQ N F+S+AL+DMYS+C KS +AW+S+ISAYG
Sbjct: 687 YGMQAHCHLIRRGFQANPFVSAALVDMYSSCGMLETGMKVFRNSGVKSISAWNSVISAYG 746
Query: 632 YHGKGWEAIELFHEMC--NSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP 689
+HG G +A+ELF EM NSG+ P KS+ ISLLSACSHSG ++EGL+YYN M E++ V+P
Sbjct: 747 FHGMGEKAMELFKEMSSGNSGMEPNKSTFISLLSACSHSGFINEGLRYYNQMEEKFGVKP 806
Query: 690 ETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELL 749
TEH VCIVDMLGR+GKL+EAYEFI + K GVWGA+LSAC++HGDTK+G +VAE+L
Sbjct: 807 VTEHRVCIVDMLGRAGKLKEAYEFIIGIGEPQKAGVWGALLSACNYHGDTKLGTEVAEVL 866
Query: 750 FKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781
F++EP+N YYISL+N YV LG W +AV + K
Sbjct: 867 FEMEPDNASYYISLANTYVGLGGWDEAVRLRK 898
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|223635620|sp|O49680.2|PP324_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19220, mitochondrial; Flags: Precursor | Back alignment and taxonomy information |
|---|
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/811 (50%), Positives = 554/811 (68%), Gaps = 32/811 (3%)
Query: 2 GFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFF 61
G L L TS+ LLT Y SS LF E KDV+ WN+MITA +N + + F
Sbjct: 117 GLLQDLATSSKLLTFYGRTGELVSSSCLFDELKEKDVIVWNSMITALNQNGRYIAAVGLF 176
Query: 62 GEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121
EM+ +G FDSTTLL+ SAL+ ++ ++ ++HCL+I+ G++ DSSLCN +N+YAK
Sbjct: 177 IEMIHKGNEFDSTTLLLAASALSSLHLSRKCSMLHCLAIETGLVGDSSLCNALMNLYAKG 236
Query: 122 GDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAV 181
+L+S+EC F+ M D VSWNTIM+ CL N +P K L YF+ M SG++AD V+ S +
Sbjct: 237 ENLSSAECVFTHMEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQEADTVTFSCVI 296
Query: 182 AASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKD 241
+A + + EL+ G+ +H L IK GY +VSV NS+ISMYS+CGD EAAE F + C+D
Sbjct: 297 SACSSIEELTLGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAAETVFEELVCRD 356
Query: 242 VVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVH 301
V+S NAI++GFA NG FEEAF +L++MQ + ++PDIATVV++ S+C D REGR+VH
Sbjct: 357 VISSNAILNGFAANGMFEEAFGILNQMQSVDKIQPDIATVVSITSICGDLSFSREGRAVH 416
Query: 302 GYAIR-RLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------ 354
GY +R + L ++NS++D Y K ++AELLF DLVSWNSMIS
Sbjct: 417 GYTVRMEMQSRALEVINSVIDMYGKCGLTTQAELLFKT-TTHRDLVSWNSMISAFSQNGF 475
Query: 355 ------LFKEML--YLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGV 406
LFKE++ Y CS+FS ST+LAIL SC+S +SL FGKS+HCW KLGF +N +
Sbjct: 476 THKAKNLFKEVVSEYSCSKFSLSTVLAILTSCDSSDSLIFGKSVHCWLQKLGFGDNMLSA 535
Query: 407 NALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQN 466
N++++MYI C DL +AF L+ +S D + WN VI C +GH E+++ F++M+++
Sbjct: 536 NSVINMYIGCRDLTSAFLRLETMSETRDLTSWNSVISGCASSGHHLESLRAFQAMSREGK 595
Query: 467 ASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSAS 526
D +TL+ ISA GNL L +G+ HGLA+KSL LDT++QN LITMYGRC+DI+SA
Sbjct: 596 IRHDLITLLGTISASGNLGLVLQGRCFHGLAIKSLRELDTQLQNTLITMYGRCKDIESAV 655
Query: 527 TVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLR 586
VF + NLC+WNC+ISA SQNKA +LFR+L+ EPNEI+ V +LSA TQLG
Sbjct: 656 KVFGLISDPNLCSWNCVISALSQNKAGREVFQLFRNLKLEPNEITFVGLLSASTQLGSTS 715
Query: 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNC---------------KSNAAWSSMISAYG 631
+G Q H H+ GFQ N F+S+AL+DMYS+C S +AW+S+ISA+G
Sbjct: 716 YGMQAHCHLIRRGFQANPFVSAALVDMYSSCGMLETGMKVFRNSGVNSISAWNSVISAHG 775
Query: 632 YHGKGWEAIELFHEM-CNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE 690
+HG G +A+ELF E+ NS + P KSS ISLLSACSHSG +DEGL YY M E++ V+P
Sbjct: 776 FHGMGEKAMELFKELSSNSEMEPNKSSFISLLSACSHSGFIDEGLSYYKQMEEKFGVKPV 835
Query: 691 TEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLF 750
TEH V IVDMLGR+GKL+EAYEFI + K GVWGA+LSAC++HGDTK+GK+VAE+LF
Sbjct: 836 TEHRVWIVDMLGRAGKLREAYEFITGIGEPQKAGVWGALLSACNYHGDTKLGKEVAEVLF 895
Query: 751 KLEPENVGYYISLSNMYVALGRWKDAVEIGK 781
++EP+N YYISL+N YV LG W++AV + K
Sbjct: 896 EMEPDNASYYISLANTYVGLGGWEEAVRLRK 926
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15234184|ref|NP_193657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|2828297|emb|CAA16711.1| putative protein [Arabidopsis thaliana] gi|7268717|emb|CAB78924.1| putative protein [Arabidopsis thaliana] gi|332658761|gb|AEE84161.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/811 (49%), Positives = 541/811 (66%), Gaps = 51/811 (6%)
Query: 2 GFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFF 61
G L L TS+ LLT Y SS LF E KDV+ WN+MITA +N + + F
Sbjct: 117 GLLQDLATSSKLLTFYGRTGELVSSSCLFDELKEKDVIVWNSMITALNQNGRYIAAVGLF 176
Query: 62 GEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121
EM+ +G FDSTTLL+ SAL+ ++ ++ ++HCL+I+ G++ DSSLCN +N+YAK
Sbjct: 177 IEMIHKGNEFDSTTLLLAASALSSLHLSRKCSMLHCLAIETGLVGDSSLCNALMNLYAKG 236
Query: 122 GDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAV 181
+L+S+EC F+ M D VSWNTIM+ CL N +P K L YF+ M SG++AD V+ S +
Sbjct: 237 ENLSSAECVFTHMEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQEADTVTFSCVI 296
Query: 182 AASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKD 241
+A + + EL+ G+ +H L IK GY +VSV NS+ISMYS+CGD EAAE F + C+D
Sbjct: 297 SACSSIEELTLGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAAETVFEELVCRD 356
Query: 242 VVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVH 301
V+S NAI++GFA NG FEEAF +L++MQ + ++PDIATVV++ S+C D REGR+VH
Sbjct: 357 VISSNAILNGFAANGMFEEAFGILNQMQSVDKIQPDIATVVSITSICGDLSFSREGRAVH 416
Query: 302 GYAIR-RLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------ 354
GY +R + L ++NS++D Y K ++AELLF DLVSWNSMIS
Sbjct: 417 GYTVRMEMQSRALEVINSVIDMYGKCGLTTQAELLFKT-TTHRDLVSWNSMISAFSQNGF 475
Query: 355 ------LFKEML--YLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGV 406
LFKE++ Y CS+FS ST+LAIL SC+S +SL FGKS+HCW KL
Sbjct: 476 THKAKNLFKEVVSEYSCSKFSLSTVLAILTSCDSSDSLIFGKSVHCWLQKL--------- 526
Query: 407 NALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQN 466
GDL +AF L+ +S D + WN VI C +GH E+++ F++M+++
Sbjct: 527 ----------GDLTSAFLRLETMSETRDLTSWNSVISGCASSGHHLESLRAFQAMSREGK 576
Query: 467 ASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSAS 526
D +TL+ ISA GNL L +G+ HGLA+KSL LDT++QN LITMYGRC+DI+SA
Sbjct: 577 IRHDLITLLGTISASGNLGLVLQGRCFHGLAIKSLRELDTQLQNTLITMYGRCKDIESAV 636
Query: 527 TVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLR 586
VF + NLC+WNC+ISA SQNKA +LFR+L+ EPNEI+ V +LSA TQLG
Sbjct: 637 KVFGLISDPNLCSWNCVISALSQNKAGREVFQLFRNLKLEPNEITFVGLLSASTQLGSTS 696
Query: 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNC---------------KSNAAWSSMISAYG 631
+G Q H H+ GFQ N F+S+AL+DMYS+C S +AW+S+ISA+G
Sbjct: 697 YGMQAHCHLIRRGFQANPFVSAALVDMYSSCGMLETGMKVFRNSGVNSISAWNSVISAHG 756
Query: 632 YHGKGWEAIELFHEM-CNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE 690
+HG G +A+ELF E+ NS + P KSS ISLLSACSHSG +DEGL YY M E++ V+P
Sbjct: 757 FHGMGEKAMELFKELSSNSEMEPNKSSFISLLSACSHSGFIDEGLSYYKQMEEKFGVKPV 816
Query: 691 TEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLF 750
TEH V IVDMLGR+GKL+EAYEFI + K GVWGA+LSAC++HGDTK+GK+VAE+LF
Sbjct: 817 TEHRVWIVDMLGRAGKLREAYEFITGIGEPQKAGVWGALLSACNYHGDTKLGKEVAEVLF 876
Query: 751 KLEPENVGYYISLSNMYVALGRWKDAVEIGK 781
++EP+N YYISL+N YV LG W++AV + K
Sbjct: 877 EMEPDNASYYISLANTYVGLGGWEEAVRLRK 907
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125529041|gb|EAY77155.1| hypothetical protein OsI_05121 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/803 (46%), Positives = 517/803 (64%), Gaps = 35/803 (4%)
Query: 8 PTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEE 67
P TS++TAYS V S+L +F E D++ WNA I+A N + F MV+
Sbjct: 99 PVRTSVITAYSRVRDVCSALQVFDEAAAPDLILWNAAISALTLNCRYGDAVVLFRWMVDV 158
Query: 68 GIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSS 127
FDST+++I++S ++ L+ G H +++K + D SL N ++MYAKCGD SS
Sbjct: 159 LGVFDSTSMVIMLSGASRARSLEHGIAFHGMALKRRLDTDLSLWNTLMDMYAKCGDFYSS 218
Query: 128 ECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACL 187
E F M DT SWN+++SG L N E YF+EM S QAD VSLS ++A + L
Sbjct: 219 EVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQADEVSLSCVLSACSHL 278
Query: 188 GEL-SYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWN 246
+L S+G+ +H+ IKLGYED+ SV NSLI+ Y + G EAAE F + K++V+WN
Sbjct: 279 KDLFSFGESVHSSVIKLGYEDTTS-SVENSLITFYYELGFPEAAEEVFLSTSNKNLVTWN 337
Query: 247 AIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIR 306
A+I G N + EA + EM+ +PD+AT+VT+IS C D LL EG+ VHGY I+
Sbjct: 338 AMIKGLVENDRVNEAMCMFQEMR--SKNQPDVATLVTIISACGDRGLLPEGKEVHGYIIK 395
Query: 307 RLLGYDLLMM-NSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG----------- 354
+ Y+ + NSL+D Y K N S A +LF + PM DL+SWN+MISG
Sbjct: 396 KGHIYEECSVGNSLLDLYMKCNDPSTARILFRTM-PMRDLISWNTMISGYSRNDSLGEEA 454
Query: 355 --LFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHM 412
+FK +L + ST++A++PSC P+ L FGKS+H + LK GF N+L+HM
Sbjct: 455 KAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHM 514
Query: 413 YINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSV 472
YI CGD +AAFSLL+ I+ SD WN IV C QNG + +A++ F+ M +PDS+
Sbjct: 515 YICCGDSLAAFSLLESITPMSDIISWNTAIVGCVQNGLYGDALEAFQFMHSTLTLNPDSI 574
Query: 473 TLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESC 532
TLV+V+S CGNL+L GKS+H +ALK L+ + RV+NAL+TMY R D +SA +F S
Sbjct: 575 TLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYFRFGDTESAELIFSSL 634
Query: 533 YNCNLCTWNCMISAFSQNKAEVRALELFRHLE-FEPNEISIVSILSACTQLGVLRHGKQI 591
NLC+WNCMIS F+QN +RAL+ ++ +E FEPNEISIV I+ ACTQLG LR GK I
Sbjct: 635 VGRNLCSWNCMISGFAQNNEGLRALQFYKKMEYFEPNEISIVGIICACTQLGDLRQGKNI 694
Query: 592 HGHVFHLGFQENSFISSALLDMYSNC---------------KSNAAWSSMISAYGYHGKG 636
HGHV G Q N FIS++L+DMYS C KS A W+SMISA+G+HG G
Sbjct: 695 HGHVVRFGLQTNVFISASLVDMYSKCGRLDISIRVFESSAEKSIACWNSMISAFGFHGLG 754
Query: 637 WEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVC 696
++IE+F +M NSG++ T+S+ I+LLSACSHSGL DEGL+YY+ M+E + + P EHHVC
Sbjct: 755 LKSIEIFWKMNNSGVKATRSTFIALLSACSHSGLTDEGLKYYHLMIEHFGIIPTPEHHVC 814
Query: 697 IVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756
+VDMLGR+G+LQEA++F+++LP + GVWGA+LSACS + KM + VA+ L LEPEN
Sbjct: 815 VVDMLGRAGRLQEAHKFVESLPSKQAHGVWGALLSACSKKSELKMCESVAKHLLCLEPEN 874
Query: 757 VGYYISLSNMYVALGRWKDAVEI 779
GYY+++SN+Y W AV++
Sbjct: 875 SGYYVTMSNLYAYQDMWSGAVQV 897
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20160775|dbj|BAB89716.1| PPR-repeat protein-like [Oryza sativa Japonica Group] gi|125573261|gb|EAZ14776.1| hypothetical protein OsJ_04704 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/803 (46%), Positives = 515/803 (64%), Gaps = 35/803 (4%)
Query: 8 PTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEE 67
P TS++TAYS V S+L +F E D++ WNA I+A N + F MV+
Sbjct: 99 PVRTSVITAYSRVRDVCSALQVFDEAAAPDLILWNAAISALTLNCRYGDAVVLFRWMVDV 158
Query: 68 GIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSS 127
DST+++I++S ++ L+ G H +++K + D SL N ++MYAKCGD SS
Sbjct: 159 LGVIDSTSMVIMLSGASRARSLEHGIAFHGMALKRCLDTDLSLWNTLMDMYAKCGDFYSS 218
Query: 128 ECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACL 187
E F M DT SWN+++SG L N E YF+EM S QAD VSLS ++A + L
Sbjct: 219 EVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQADEVSLSCVLSACSHL 278
Query: 188 GEL-SYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWN 246
+L S+G+ +H+ IKLGYED+ SV NSLI+ Y + G EAAE F + K++V+WN
Sbjct: 279 KDLFSFGESVHSSVIKLGYEDTTS-SVANSLITFYYELGFPEAAEEVFLSTSNKNLVTWN 337
Query: 247 AIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIR 306
A+I G N + EA + EM+ +PD+AT+VT+IS C D LL EG+ VHGY I+
Sbjct: 338 AMIKGLVENDRVNEAMCMFQEMR--SKNQPDVATLVTIISACGDHGLLPEGKEVHGYIIK 395
Query: 307 RLLGYDLLMM-NSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG----------- 354
+ Y+ + NSL+D Y K N S A +LF + PM DL+SWN+MISG
Sbjct: 396 KGHIYEECSVGNSLLDLYMKCNDPSTARILFRTM-PMRDLISWNTMISGYSRNDSLGEEA 454
Query: 355 --LFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHM 412
+FK +L + ST++A++PSC P+ L FGKS+H + LK GF N+L+HM
Sbjct: 455 KAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHM 514
Query: 413 YINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSV 472
YI CGD +AAFSLL+ I+ SD WN IV C QNG + +A++ F+ M +PDS+
Sbjct: 515 YICCGDSLAAFSLLESITPISDIISWNTAIVGCVQNGLYGDALEAFQFMHSTLTLNPDSI 574
Query: 473 TLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESC 532
TLV+V+S CGNL+L GKS+H +ALK L+ + RV+NAL+TMY R D +SA +F S
Sbjct: 575 TLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYFRFGDTESAELIFSSL 634
Query: 533 YNCNLCTWNCMISAFSQNKAEVRALELFRHLE-FEPNEISIVSILSACTQLGVLRHGKQI 591
NLC+WNCMIS F+QN +RA + ++ +E FEPNEISIV I+ ACTQLG LR GK I
Sbjct: 635 VGRNLCSWNCMISGFAQNNEGLRAFQFYKKMEDFEPNEISIVGIICACTQLGDLRQGKNI 694
Query: 592 HGHVFHLGFQENSFISSALLDMYSNC---------------KSNAAWSSMISAYGYHGKG 636
HGHV G Q N FIS++L+DMYS C KS A W+SMISA+G+HG G
Sbjct: 695 HGHVVRFGLQTNVFISASLVDMYSKCGRLDISIRVFESSAEKSIACWNSMISAFGFHGLG 754
Query: 637 WEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVC 696
++IE+F +M NSG++ T+S+ I+LLSACSHSGL DEGL+YY+ M+E + + P EHHVC
Sbjct: 755 LKSIEIFWKMNNSGVKATRSTFIALLSACSHSGLTDEGLKYYHLMIEHFGIIPTPEHHVC 814
Query: 697 IVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756
+VDMLGR+G+LQEA++F+++LP + GVWGA+LSACS + KM + VA+ L LEPEN
Sbjct: 815 VVDMLGRAGRLQEAHKFVESLPSKQAHGVWGALLSACSKKSELKMCESVAKHLLCLEPEN 874
Query: 757 VGYYISLSNMYVALGRWKDAVEI 779
GYY+++SN+Y W AV++
Sbjct: 875 SGYYVTMSNLYAYQDMWSGAVQV 897
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413951361|gb|AFW84010.1| hypothetical protein ZEAMMB73_045792 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/783 (45%), Positives = 504/783 (64%), Gaps = 36/783 (4%)
Query: 30 FYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCL 89
F E DV+ WNA + A + F M E FDSTT+++++S ++ L
Sbjct: 119 FREAVAPDVILWNAAVGALTTSCRYDDAAALFRRMARELGEFDSTTVVVMLSGASRAGNL 178
Query: 90 KQGRVVHCLSIKAGMIADS-SLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSG 148
++G +H ++ K+ + A N V+MYAKCG+ S+E F M C DT SWN+++SG
Sbjct: 179 RRGMELHGMAAKSCLGAHCLGAWNALVDMYAKCGEFRSAEVVFHSMPCRDTTSWNSVISG 238
Query: 149 CLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGEL-SYGKVIHALGIKLGYED 207
+ N E YFREM S Q D VSLSS ++A + L +L S+G+ +H+ +KLGYED
Sbjct: 239 SIFNGLAEVSACYFREMSCSIFQPDEVSLSSVLSACSRLDDLFSFGESVHSCAVKLGYED 298
Query: 208 SPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHE 267
+ SV NSL++ YS+ G EAA++ F +++VSWNA+I G N + EA +L +
Sbjct: 299 TASCSVANSLVTFYSEFGMPEAAKKVFASNLNRNLVSWNAMIKGLVQNERVTEALAVLRQ 358
Query: 268 MQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRR-LLGYDLLMMNSLMDFYSKS 326
M+L +PD+AT+VT++S CAD LL EG ++HGY IR+ LL + M NSL+D Y K
Sbjct: 359 MRLEN--QPDVATLVTIVSGCADQGLLSEGETLHGYVIRKGLLREEPSMGNSLLDLYLKC 416
Query: 327 NSLSKAELLFNAIAPMNDLVSWNSMISG-------------LFKEMLYLCSQFSFSTLLA 373
+ S A LLF + P DL+SWN+MISG +FK +L S S +T+LA
Sbjct: 417 DEPSNAGLLFMTM-PRRDLISWNTMISGYSRYGPLREEAQLMFKGLLSEGSSCSLATMLA 475
Query: 374 ILPSCNSPESLEFGKSIHCWQLKLGFSNNTI-GVNALMHMYINCGDLVAAFSLLQRISHN 432
++PSC+ PE L FGK++H + LK GF+++ + VNAL+HMY++CGD +AAFSL++RI
Sbjct: 476 VIPSCSIPEELSFGKALHSFSLKCGFTSSGVSAVNALIHMYMSCGDPLAAFSLIERIIPV 535
Query: 433 SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKS 492
SD WN VIV C QN ++A++ F+ M +PDS+T+V+V+SACG+L L GKS
Sbjct: 536 SDIISWNTVIVGCLQNELHKDALEIFRFMYCSLAINPDSITIVSVLSACGDLNLLALGKS 595
Query: 493 LHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKA 552
+H + LK L + RV+N+L+TMY R D +SA VF S + NLC+WNCMIS F+QN
Sbjct: 596 IHCMILKHLFASNLRVKNSLLTMYFRFGDTRSAELVFYSMGDTNLCSWNCMISGFAQNNK 655
Query: 553 EVRALELFRHLE-FEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALL 611
RAL+ ++ +E FEPNEIS+V I+ ACTQLG R GK IHGHVF N FIS++L+
Sbjct: 656 GWRALQFYQKMEDFEPNEISVVGIICACTQLGGYRQGKSIHGHVFRSVLHNNVFISASLV 715
Query: 612 DMYSNC---------------KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS 656
DMY C KS A W+S+ISA+G+HG G ++I+LF +M +SG++ TKS
Sbjct: 716 DMYCKCGRLDIAVRVFEASAEKSIAGWNSLISAFGFHGHGMKSIDLFWKMHDSGMKATKS 775
Query: 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKN 716
+ I+LLSACSHSGLVDEG +YY M E++ + P EHHVCIVDMLGR+G+LQEA++F+++
Sbjct: 776 TFIALLSACSHSGLVDEGWKYYCLMSEKFGITPAPEHHVCIVDMLGRAGRLQEAHKFVES 835
Query: 717 LPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDA 776
LP Q G+WGA+L+ACS + KMG+ +A+ L LEP N GYY++ +N+Y W
Sbjct: 836 LPSQQTHGIWGALLNACSSRSELKMGESIAKHLLHLEPGNSGYYVTAANLYAYKDMWSGV 895
Query: 777 VEI 779
++
Sbjct: 896 AQV 898
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 781 | ||||||
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.731 | 0.609 | 0.293 | 3.6e-113 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.677 | 0.545 | 0.285 | 1.4e-99 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.679 | 0.602 | 0.287 | 9e-98 | |
| TAIR|locus:2134842 | 729 | AT4G04370 [Arabidopsis thalian | 0.539 | 0.577 | 0.312 | 7.6e-92 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.597 | 0.524 | 0.290 | 3.6e-90 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.731 | 0.666 | 0.264 | 3e-52 | |
| TAIR|locus:2019130 | 895 | OTP87 "organelle transcript pr | 0.887 | 0.774 | 0.279 | 3.6e-61 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.728 | 0.534 | 0.265 | 3.3e-58 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.709 | 0.556 | 0.267 | 1.6e-48 | |
| TAIR|locus:2063771 | 689 | AT2G03380 [Arabidopsis thalian | 0.677 | 0.767 | 0.280 | 8.9e-54 |
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 662 (238.1 bits), Expect = 3.6e-113, Sum P(2) = 3.6e-113
Identities = 177/604 (29%), Positives = 304/604 (50%)
Query: 36 KDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCL-KQGRV 94
++ V+WN M++ V + G+ FF +M + GI+ S + +V+A + + ++G
Sbjct: 21 RNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQ 80
Query: 95 VHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNY 154
VH K+G+++D + +++Y G ++ S F M + VSW ++M G
Sbjct: 81 VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGE 140
Query: 155 PEKCLLYFREMGWSGEQADNXXXXXXXXXXXCLGELSYGKVIHALGIKLGYEDSPYVSVT 214
PE+ + ++ M G + L + S G+ I +K G E ++V
Sbjct: 141 PEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESK--LAVE 198
Query: 215 NSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSV 274
NSLISM G+++ A F M+ +D +SWN+I +A NG EE+F + M+
Sbjct: 199 NSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD- 257
Query: 275 EPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYD--LLMMNSLMDFYSKSNSLSKA 332
E + TV TL+S+ + GR +HG ++ +G+D + + N+L+ Y+ + +A
Sbjct: 258 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVK--MGFDSVVCVCNTLLRMYAGAGRSVEA 315
Query: 333 ELLFNAIAPMNDLVSWNSMISGLFKE------MLYLCSQFS------FSTLLAILPSCNS 380
L+F + P DL+SWNS+++ + + LCS S + T + L +C +
Sbjct: 316 NLVFKQM-PTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFT 374
Query: 381 PESLEFGKSIHCWQLKLG-FSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWN 439
P+ E G+ +H + G F N IG NAL+ MY G++ + +L ++ D WN
Sbjct: 375 PDFFEKGRILHGLVVVSGLFYNQIIG-NALVSMYGKIGEMSESRRVLLQMPRR-DVVAWN 432
Query: 440 IVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISAC---GNLELAFEGKSLHGL 496
+I ++ +A+ F++M + + S + +T+V+V+SAC G +L GK LH
Sbjct: 433 ALIGGYAEDEDPDKALAAFQTM-RVEGVSSNYITVVSVLSACLLPG--DLLERGKPLHAY 489
Query: 497 ALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRA 556
+ + D V+N+LITMY +C D+ S+ +F N N+ TWN M++A + +
Sbjct: 490 IVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEV 549
Query: 557 LEL---FRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDM 613
L+L R ++ S LSA +L VL G+Q+HG LGF+ +SFI +A DM
Sbjct: 550 LKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADM 609
Query: 614 YSNC 617
YS C
Sbjct: 610 YSKC 613
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
Identities = 161/564 (28%), Positives = 282/564 (50%)
Query: 78 IIVSALTQMNCLKQGRVVHCL-SIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHC 136
+++ A + ++ GR +H L S + D LC + MYA CG + S F +
Sbjct: 89 LLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRS 148
Query: 137 ADTVSWNTIMSGCLHNNYPEKCLLYFREM-GWSGEQADNXXXXXXXXXXXCLGELSYGKV 195
+ WN ++S N ++ L F EM + D+ + ++ G
Sbjct: 149 KNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLA 208
Query: 196 IHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALN 255
+H L +K G + +V N+L+S Y G + A + F M +++VSWN++I F+ N
Sbjct: 209 VHGLVVKTGLVEDVFVG--NALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDN 266
Query: 256 GKFEEAFDLLHEMQLMR---SVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYD 312
G EE+F LL EM + PD+AT+VT++ +CA + G+ VHG+A++ L +
Sbjct: 267 GFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKE 326
Query: 313 LLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------------LFKEML 360
L++ N+LMD YSK ++ A+++F N +VSWN+M+ G + ++ML
Sbjct: 327 LVLNNALMDMYSKCGCITNAQMIFKMNNNKN-VVSWNTMVGGFSAEGDTHGTFDVLRQML 385
Query: 361 YLCSQFSFS--TLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGD 418
T+L +P C L K +HC+ LK F N + NA + Y CG
Sbjct: 386 AGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGS 445
Query: 419 LVAAFSLLQRISHN--SDT-SCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLV 475
L S QR+ H S T + WN +I Q+ + ++ M + PDS T+
Sbjct: 446 L----SYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQM-KISGLLPDSFTVC 500
Query: 476 NVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNC 535
+++SAC L+ GK +HG +++ + D V +++++Y C ++ + +F++ +
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 560
Query: 536 NLCTWNCMISAFSQNKAEVRALELFRHLEFEPNE---ISIVSILSACTQLGVLRHGKQIH 592
+L +WN +I+ + QN RAL +FR + + IS++ + AC+ L LR G++ H
Sbjct: 561 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAH 620
Query: 593 GHVF-HLGFQENSFISSALLDMYS 615
+ HL ++++FI+ +L+DMY+
Sbjct: 621 AYALKHL-LEDDAFIACSLIDMYA 643
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 9.0e-98, Sum P(2) = 9.0e-98
Identities = 160/556 (28%), Positives = 274/556 (49%)
Query: 79 IVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCAD 138
I AL+ + L + R +H L I G+ + ++ Y+ + SS F + A
Sbjct: 10 ISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAK 69
Query: 139 TVS-WNTIMSGCLHNN-YPEKCLLYFREMGWSGEQADNXXXXXXXXXXXCLGELSYGKVI 196
V WN+I+ N +PE L ++ ++ S D L + G ++
Sbjct: 70 NVYLWNSIIRAFSKNGLFPE-ALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLV 128
Query: 197 HALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNG 256
+ + +G+E +V N+L+ MYS+ G + A + F M +D+VSWN++I G++ +G
Sbjct: 129 YEQILDMGFESDLFVG--NALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHG 186
Query: 257 KFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMM 316
+EEA ++ HE++ V PD TV +++ + L++++G+ +HG+A++ + +++
Sbjct: 187 YYEEALEIYHELKNSWIV-PDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVN 245
Query: 317 NSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFK-EM------LYL--CSQFS 367
N L+ Y K + A +F+ + + D VS+N+MI G K EM ++L QF
Sbjct: 246 NGLVAMYLKFRRPTDARRVFDEM-DVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFK 304
Query: 368 --FSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSL 425
T+ ++L +C L K I+ + LK GF + N L+ +Y CGD++ A +
Sbjct: 305 PDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDV 364
Query: 426 LQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNL- 484
+ DT WN +I Q+G EA+K FK M + + D +T + +IS L
Sbjct: 365 FNSMECK-DTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQA-DHITYLMLISVSTRLA 422
Query: 485 ELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMI 544
+L F GK LH +KS + +D V NALI MY +C ++ + +F S + TWN +I
Sbjct: 423 DLKF-GKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVI 481
Query: 545 SA---FSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQ 601
SA F ++ R E P+ + + L C L R GK+IH + G++
Sbjct: 482 SACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYE 541
Query: 602 ENSFISSALLDMYSNC 617
I +AL++MYS C
Sbjct: 542 SELQIGNALIEMYSKC 557
|
|
| TAIR|locus:2134842 AT4G04370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 7.6e-92, Sum P(3) = 7.6e-92
Identities = 140/448 (31%), Positives = 235/448 (52%)
Query: 187 LGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWN 246
L LS+G IH + G+ Y+S +SL+++Y++ G + A + F M +DVV W
Sbjct: 59 LQRLSFGLSIHQQVLVNGFSSDFYIS--SSLVNLYAKFGLLAHARKVFEEMRERDVVHWT 116
Query: 247 AIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIR 306
A+I ++ G EA L++EM+ + ++P VTL+ + + L + + + +H +A+
Sbjct: 117 AMIGCYSRAGIVGEACSLVNEMRF-QGIKPG---PVTLLEMLSGVLEITQLQCLHDFAVI 172
Query: 307 RLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGL-----FKEMLY 361
D+ +MNS+++ Y K + + A+ LF+ + D+VSWN+MISG E+L
Sbjct: 173 YGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQME-QRDMVSWNTMISGYASVGNMSEILK 231
Query: 362 LCSQF-------SFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYI 414
L + T A L + LE G+ +HC +K GF + AL+ MY+
Sbjct: 232 LLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYL 291
Query: 415 NCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTL 474
CG A++ +L+ I N D CW ++I + G ++A+ F M Q + S +
Sbjct: 292 KCGKEEASYRVLETIP-NKDVVCWTVMISGLMRLGRAEKALIVFSEMLQS-GSDLSSEAI 349
Query: 475 VNVISACGNLELAFE-GKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY 533
+V+++C L +F+ G S+HG L+ LDT N+LITMY +C + + +FE
Sbjct: 350 ASVVASCAQLG-SFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIFERMN 408
Query: 534 NCNLCTWNCMISAFSQNKAEVRALELFRHLEFEP----NEISIVSILSACTQLGVLRHGK 589
+L +WN +IS ++QN +AL LF ++F+ + ++VS+L AC+ G L GK
Sbjct: 409 ERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGK 468
Query: 590 QIHGHVFHLGFQENSFISSALLDMYSNC 617
IH V + S + +AL+DMYS C
Sbjct: 469 LIHCIVIRSFIRPCSLVDTALVDMYSKC 496
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 3.6e-90, Sum P(2) = 3.6e-90
Identities = 148/510 (29%), Positives = 255/510 (50%)
Query: 142 WNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNXXXXXXXXXXXCLGELSYGKVIHALGI 201
W ++ + +N + +L + +M G + DN L ++ GK IHA
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 202 KLGYE-DSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEE 260
K GY DS V+V N+L+++Y +CGD A + F ++ ++ VSWN++I K+E
Sbjct: 125 KFGYGVDS--VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182
Query: 261 AFDLLHEMQLMRSVEPDIATVVTLISLCADSLL---LREGRSVHGYAIRRLLG-YDLLMM 316
A + M L +VEP T+V++++ C++ + L G+ VH Y +R+ G + ++
Sbjct: 183 ALEAFRCM-LDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRK--GELNSFII 239
Query: 317 NSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGL------------FKEMLYLCS 364
N+L+ Y K L+ +++L + DLV+WN+++S L +EM+
Sbjct: 240 NTLVAMYGKLGKLASSKVLLGSFGG-RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGV 298
Query: 365 QFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGF--SNNTIGVNALMHMYINCGDLVAA 422
+ T+ ++LP+C+ E L GK +H + LK G N+ +G +AL+ MY NC +++
Sbjct: 299 EPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVG-SALVDMYCNCKQVLSG 357
Query: 423 FSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACG 482
+ + + WN +I +QN H +EA+ F M + +S T+ V+ AC
Sbjct: 358 RRVFDGM-FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 416
Query: 483 NLELAFEGK-SLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWN 541
AF K ++HG +K + D VQN L+ MY R I A +F + +L TWN
Sbjct: 417 RSG-AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWN 475
Query: 542 CMISA--FSQNKAE-VRALELFRHLE-----------FEPNEISIVSILSACTQLGVLRH 587
MI+ FS++ + + L ++LE +PN I++++IL +C L L
Sbjct: 476 TMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAK 535
Query: 588 GKQIHGHVFHLGFQENSFISSALLDMYSNC 617
GK+IH + + + SAL+DMY+ C
Sbjct: 536 GKEIHAYAIKNNLATDVAVGSALVDMYAKC 565
|
|
| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 3.0e-52, P = 3.0e-52
Identities = 159/601 (26%), Positives = 278/601 (46%)
Query: 9 TSTSLLTAYSNVSYFESSLALFY--ETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVE 66
T +L Y+ F +FY + + WN++I++ V N + L F+ +M+
Sbjct: 72 TDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLC 131
Query: 67 EGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNS 126
G+ D +T +V A + K + GM + + + + Y + G ++
Sbjct: 132 FGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDV 191
Query: 127 SECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNXXXXXXXXXXXC 186
F + D V WN +++G + + F M +Q C
Sbjct: 192 PSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRM--DQISPNAVTFDCVLSVC 249
Query: 187 LGEL--SYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVS 244
+L G +H L + G + S+ NSL+SMYS+CG + A + F M+ D V+
Sbjct: 250 ASKLLIDLGVQLHGLVVVSGVDFEG--SIKNSLLSMYSKCGRFDDASKLFRMMSRADTVT 307
Query: 245 WNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYA 304
WN +I G+ +G EE+ +EM + V PD T +L+ + L + +H Y
Sbjct: 308 WNCMISGYVQSGLMEESLTFFYEM-ISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYI 366
Query: 305 IRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCS 364
+R + D+ + ++L+D Y K +S A+ +F+ + D+V + +MISG LY+ S
Sbjct: 367 MRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSV-DVVVFTAMISGYLHNGLYIDS 425
Query: 365 QFSFS------------TLLAILPSCNSPESLEFGKSIHCWQLKLGFSNN-TIGVNALMH 411
F TL++ILP +L+ G+ +H + +K GF N IG A++
Sbjct: 426 LEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGC-AVID 484
Query: 412 MYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS 471
MY CG + A+ + +R+S D WN +I C Q+ + AI F+ M D
Sbjct: 485 MYAKCGRMNLAYEIFERLSKR-DIVSWNSMITRCAQSDNPSAAIDIFRQMGVS-GICYDC 542
Query: 472 VTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFES 531
V++ +SAC NL GK++HG +K + D ++ LI MY +C ++K+A VF++
Sbjct: 543 VSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKT 602
Query: 532 CYNCNLCTWNCMISAFSQNKAEVRALELFRHLE----FEPNEISIVSILSACTQLGVLRH 587
N+ +WN +I+A + +L LF + P++I+ + I+S+C +G +
Sbjct: 603 MKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDE 662
Query: 588 G 588
G
Sbjct: 663 G 663
|
|
| TAIR|locus:2019130 OTP87 "organelle transcript processing 87" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 3.6e-61, P = 3.6e-61
Identities = 210/751 (27%), Positives = 347/751 (46%)
Query: 2 GFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFF 61
G+ + ++L+ +S FE + +F ++ + +V WN +I + N+ F
Sbjct: 180 GYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLF 239
Query: 62 GEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121
EM + DS T +++A + L+ G+VV IK G D +C V++YAKC
Sbjct: 240 HEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGA-EDVFVCTAIVDLYAKC 298
Query: 122 GDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNXXXXXXX 181
G + + FS + VSW ++SG +N L F+EM SG + +N
Sbjct: 299 GHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVI 358
Query: 182 XXXXCLGELSYGKVIHALGIKLG-YEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTC- 239
+ +HA K G Y DS SV +LISMYS+ GDI+ +E+ F +
Sbjct: 359 SACGRPSMVCEASQVHAWVFKSGFYLDS---SVAAALISMYSKSGDIDLSEQVFEDLDDI 415
Query: 240 --KDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREG 297
+++V N +I F+ + K +A L M L + D +V +L+S+ D L L G
Sbjct: 416 QRQNIV--NVMITSFSQSKKPGKAIRLFTRM-LQEGLRTDEFSVCSLLSVL-DCLNL--G 469
Query: 298 RSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG--- 354
+ VHGY ++ L DL + +SL YSK SL ++ LF I P D W SMISG
Sbjct: 470 KQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGI-PFKDNACWASMISGFNE 528
Query: 355 ---------LFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIG 405
LF EML + STL A+L C+S SL GK IH + L+ G
Sbjct: 529 YGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDL 588
Query: 406 VNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQ 465
+AL++MY CG L A + R+ SC ++ I +Q+G Q+ F+ M
Sbjct: 589 GSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSL-ISGYSQHGLIQDGFLLFRDMVMS- 646
Query: 466 NASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSA 525
+ DS + +++ A + + G +H K + + V ++L+TMY + I
Sbjct: 647 GFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDC 706
Query: 526 STVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLE---FEPNEISIVSILSACTQL 582
F +L W +I++++Q+ AL+++ ++ F+P++++ V +LSAC+
Sbjct: 707 CKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACS-- 764
Query: 583 GVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIEL 642
HG + FHL NS + Y N + M+ A G G+ EA E
Sbjct: 765 ----HGGLVEESYFHL----NSMVKD-----YGIEPENRHYVCMVDALGRSGRLREA-ES 810
Query: 643 FHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDML 701
F + N I+P +LL+AC G V+ G +E + P + ++ + ++L
Sbjct: 811 F--INNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIE---LEPSDAGAYISLSNIL 865
Query: 702 GRSGK---LQEAYEFIKNLPIQPKPGVWGAM 729
G+ ++E + +K +Q +PG W ++
Sbjct: 866 AEVGEWDEVEETRKLMKGTGVQKEPG-WSSV 895
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 3.3e-58, P = 3.3e-58
Identities = 157/592 (26%), Positives = 281/592 (47%)
Query: 13 LLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFD 72
L+ YS + + + +F KD +W AMI+ +N C + F +M GI
Sbjct: 228 LIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPT 287
Query: 73 STTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFS 132
++SA ++ L+ G +H L +K G +D+ +CN V++Y G+L S+E FS
Sbjct: 288 PYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFS 347
Query: 133 GMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNXXXXXXXXXXXCLGELSY 192
M D V++NT+++G Y EK + F+ M G + D+ G L
Sbjct: 348 NMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFR 407
Query: 193 GKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGF 252
G+ +HA KLG+ + + +L+++Y++C DIE A F ++VV WN ++ +
Sbjct: 408 GQQLHAYTTKLGFASNN--KIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 465
Query: 253 ALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYD 312
L +F + +MQ+ + P+ T +++ C L G +H I+ +
Sbjct: 466 GLLDDLRNSFRIFRQMQI-EEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLN 524
Query: 313 LLMMNSLMDFYSKSNSLSKA-ELLFNAIAPMNDLVSWNSMISGL------------FKEM 359
+ + L+D Y+K L A ++L D+VSW +MI+G F++M
Sbjct: 525 AYVCSVLIDMYAKLGKLDTAWDILIRFAG--KDVVSWTTMIAGYTQYNFDDKALTTFRQM 582
Query: 360 LYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDL 419
L + L + +C ++L+ G+ IH GFS++ NAL+ +Y CG +
Sbjct: 583 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI 642
Query: 420 VAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVIS 479
++ ++ + D WN ++ Q+G+ +EA++ F M ++ ++ T + +
Sbjct: 643 EESYLAFEQ-TEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE-GIDNNNFTFGSAVK 700
Query: 480 ACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCT 539
A +GK +H + K+ +T V NALI+MY +C I A F N +
Sbjct: 701 AASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS 760
Query: 540 WNCMISAFSQNKAEVRALELFR---HLEFEPNEISIVSILSACTQLGVLRHG 588
WN +I+A+S++ AL+ F H PN +++V +LSAC+ +G++ G
Sbjct: 761 WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 812
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 1.6e-48, P = 1.6e-48
Identities = 158/591 (26%), Positives = 281/591 (47%)
Query: 26 SLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIR---FDSTTLLIIVSA 82
+L F + K+ V+WN++I+ + F M +G R + +L+ +
Sbjct: 159 ALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACS 218
Query: 83 LTQ--MNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTV 140
LT+ + L+Q + C K+G++ D + + V+ +AK G L+ + F+ M + V
Sbjct: 219 LTEPDVRLLEQ---IMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAV 275
Query: 141 SWNTIMSGCLHNNYPEKCLLYFREMGWSGEQA-DNXXXXXXXXXXXCLGE---LSYGKVI 196
+ N +M G + + E+ F +M + + ++ L E L G+ +
Sbjct: 276 TLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREV 335
Query: 197 HALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNG 256
H I G D V + N L++MY++CG I A R F+ MT KD VSWN++I G NG
Sbjct: 336 HGHVITTGLVDF-MVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNG 394
Query: 257 KFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDL--L 314
F EA + M+ + P T+++ +S CA + G+ +HG +++ LG DL
Sbjct: 395 CFIEAVERYKSMR-RHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLK--LGIDLNVS 451
Query: 315 MMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKE--------MLYLCSQ- 365
+ N+LM Y+++ L++ +F+++ P +D VSWNS+I L + + +L +Q
Sbjct: 452 VSNALMTLYAETGYLNECRKIFSSM-PEHDQVSWNSIIGALARSERSLPEAVVCFLNAQR 510
Query: 366 ----FSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVA 421
+ T ++L + +S E GK IH LK ++ NAL+ Y CG++
Sbjct: 511 AGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDG 570
Query: 422 AFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISAC 481
+ R++ D WN +I N +A+ M Q DS V+SA
Sbjct: 571 CEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRL-DSFMYATVLSAF 629
Query: 482 GNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWN 541
++ G +H ++++ + D V +AL+ MY +C + A F + N +WN
Sbjct: 630 ASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWN 689
Query: 542 CMISAFSQNKAEVRALELFRHLEFE----PNEISIVSILSACTQLGVLRHG 588
MIS ++++ AL+LF ++ + P+ ++ V +LSAC+ G+L G
Sbjct: 690 SMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEG 740
|
|
| TAIR|locus:2063771 AT2G03380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 157/560 (28%), Positives = 267/560 (47%)
Query: 73 STTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFS 132
S+ +++S T ++ L+Q H + G++ D S+ V++Y G + F
Sbjct: 44 SSPCFLLLSKCTNIDSLRQS---HGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFD 100
Query: 133 GMHCADTVSWNTIMSG-CLHNNYPEKCLLYFREMGWSGEQADNXXXXXXXXXXXCLGELS 191
+ D W ++ CL+ E LY M G + D+ L +L
Sbjct: 101 QIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMK-HGFRYDDIVFSKALKACTELQDLD 159
Query: 192 YGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDG 251
GK IH +K+ D+ V L+ MY++CG+I++A + F +T ++VV W ++I G
Sbjct: 160 NGKKIHCQLVKVPSFDNV---VLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAG 216
Query: 252 FALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGY 311
+ N EE L + M+ +V + T TLI C L +G+ HG ++ +
Sbjct: 217 YVKNDLCEEGLVLFNRMR-ENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIEL 275
Query: 312 DLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------------LFKEM 359
++ SL+D Y K +S A +FN + + DLV W +MI G LF++M
Sbjct: 276 SSCLVTSLLDMYVKCGDISNARRVFNEHSHV-DLVMWTAMIVGYTHNGSVNEALSLFQKM 334
Query: 360 LYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDL 419
+ + + T+ ++L C E+LE G+S+H +K+G + + NAL+HMY C
Sbjct: 335 KGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVA-NALVHMYAKCYQN 393
Query: 420 VAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVIS 479
A + + S D WN +I +QNG EA+ F M + + +P+ VT+ ++ S
Sbjct: 394 RDAKYVFEMESEK-DIVAWNSIISGFSQNGSIHEALFLFHRMNSE-SVTPNGVTVASLFS 451
Query: 480 ACGNLELAFEGKSLHGLALKS--LMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNL 537
AC +L G SLH ++K L V AL+ Y +C D +SA +F++ N
Sbjct: 452 ACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNT 511
Query: 538 CTWNCMISAFSQNKAEVRALELFRHL---EFEPNEISIVSILSACTQLGVLRHGKQIHGH 594
TW+ MI + + + +LELF + + +PNE + SILSAC G++ GK+
Sbjct: 512 ITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSS 571
Query: 595 VFH-LGFQENSFISSALLDM 613
++ F ++ + ++DM
Sbjct: 572 MYKDYNFTPSTKHYTCMVDM 591
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O49680 | PP324_ARATH | No assigned EC number | 0.5067 | 0.9974 | 0.8191 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 781 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-132 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-72 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-67 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-66 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-63 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-54 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-44 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-37 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-36 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-34 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-22 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 412 bits (1061), Expect = e-132
Identities = 212/611 (34%), Positives = 332/611 (54%), Gaps = 42/611 (6%)
Query: 199 LGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKF 258
LG++LG N+++SM+ + G++ A F M +D+ SWN ++ G+A G F
Sbjct: 119 LGVRLG----------NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYF 168
Query: 259 EEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNS 318
+EA L H M L V PD+ T ++ C L GR VH + +R D+ ++N+
Sbjct: 169 DEALCLYHRM-LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227
Query: 319 LMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------------LFKEMLYLCSQF 366
L+ Y K + A L+F+ + P D +SWN+MISG LF M L
Sbjct: 228 LITMYVKCGDVVSARLVFDRM-PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286
Query: 367 SFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLL 426
T+ +++ +C G+ +H + +K GF+ + N+L+ MY++ G A +
Sbjct: 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346
Query: 427 QRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLEL 486
R+ D W +I +NG +A++T+ M +Q N SPD +T+ +V+SAC L
Sbjct: 347 SRME-TKDAVSWTAMISGYEKNGLPDKALETYALM-EQDNVSPDEITIASVLSACACLGD 404
Query: 487 AFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISA 546
G LH LA + + V NALI MY +C+ I A VF + ++ +W +I+
Sbjct: 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464
Query: 547 FSQNKAEVRALELFRH--LEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENS 604
N AL FR L +PN +++++ LSAC ++G L GK+IH HV G +
Sbjct: 465 LRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524
Query: 605 FISSALLDMYSNC--------------KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSG 650
F+ +ALLD+Y C K +W+ +++ Y HGKG A+ELF+ M SG
Sbjct: 525 FLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584
Query: 651 IRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEA 710
+ P + + ISLL ACS SG+V +GL+Y+++M E+Y + P +H+ C+VD+LGR+GKL EA
Sbjct: 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644
Query: 711 YEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770
Y FI +PI P P VWGA+L+AC H ++G+ A+ +F+L+P +VGYYI L N+Y
Sbjct: 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704
Query: 771 GRWKDAVEIGK 781
G+W + + K
Sbjct: 705 GKWDEVARVRK 715
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 4e-72
Identities = 124/429 (28%), Positives = 225/429 (52%), Gaps = 20/429 (4%)
Query: 369 STLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQR 428
ST A++ +C + +S+ K+++ GF + +N ++ M++ CG L+ A L
Sbjct: 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183
Query: 429 ISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAF 488
+ + S W +I G+++EA F+ M + + + T V ++ A L A
Sbjct: 184 MPERNLAS-WGTIIGGLVDAGNYREAFALFREMWEDGSDAE-PRTFVVMLRASAGLGSAR 241
Query: 489 EGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFS 548
G+ LH LK+ + DT V ALI MY +C DI+ A VF+ WN M++ ++
Sbjct: 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA 301
Query: 549 QNKAEVRALELF---RHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSF 605
+ AL L+ R ++ + ++ ++L +L H KQ H + GF +
Sbjct: 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361
Query: 606 ISSALLDMYSNC---------------KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSG 650
++AL+D+YS K+ +W+++I+ YG HG+G +A+E+F M G
Sbjct: 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 651 IRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEA 710
+ P + +++LSAC +SGL ++G + + +M E + ++P H+ C++++LGR G L EA
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 711 YEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770
Y I+ P +P +W A+L+AC H + ++G+ AE L+ + PE + Y+ L N+Y +
Sbjct: 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541
Query: 771 GRWKDAVEI 779
GR +A ++
Sbjct: 542 GRQAEAAKV 550
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 3e-67
Identities = 161/571 (28%), Positives = 272/571 (47%), Gaps = 41/571 (7%)
Query: 110 LCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSG 169
L N ++M+ + G+L + F M D SWN ++ G Y ++ L + M W+G
Sbjct: 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182
Query: 170 EQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEA 229
+ D + + + +L+ G+ +HA ++ G+E V V N+LI+MY +CGD+ +
Sbjct: 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD--VDVVNALITMYVKCGDVVS 240
Query: 230 AERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCA 289
A F M +D +SWNA+I G+ NG+ E +L M SV+PD+ T+ ++IS C
Sbjct: 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACE 299
Query: 290 DSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWN 349
R GR +HGY ++ D+ + NSL+ Y S +AE +F+ + D VSW
Sbjct: 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWT 358
Query: 350 SMISGLFK--------EMLYLCSQFSFS----TLLAILPSCNSPESLEFGKSIHCWQLKL 397
+MISG K E L Q + S T+ ++L +C L+ G +H +
Sbjct: 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418
Query: 398 GFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKT 457
G + + NAL+ MY C + A + I D W +I N EA+
Sbjct: 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIF 477
Query: 458 FKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYG 517
F+ M P+SVTL+ +SAC + GK +H L++ +G D + NAL+ +Y
Sbjct: 478 FRQM--LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535
Query: 518 RCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL---EFEPNEISIVS 574
RC + A F S ++ +WN +++ + + A+ELF + P+E++ +S
Sbjct: 536 RCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594
Query: 575 ILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHG 634
+L AC++ G++ G + FH ++ + YS + ++ ++ G G
Sbjct: 595 LLCACSRSGMVTQGLEY----FH-----------SMEEKYSITPNLKHYACVVDLLGRAG 639
Query: 635 KGWEAIELFHEMCNSGIRPTKSSVISLLSAC 665
K EA ++M I P + +LL+AC
Sbjct: 640 KLTEAYNFINKM---PITPDPAVWGALLNAC 667
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 2e-66
Identities = 144/475 (30%), Positives = 235/475 (49%), Gaps = 22/475 (4%)
Query: 29 LFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNC 88
+F + +D+ +WN ++ + L + M+ G+R D T ++ +
Sbjct: 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202
Query: 89 LKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSG 148
L +GR VH ++ G D + N + MY KCGD+ S+ F M D +SWN ++SG
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 149 CLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDS 208
N + L F M D ++++S ++A LG+ G+ +H +K G+
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 209 PYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEM 268
VSV NSLI MY G AE+ F M KD VSW A+I G+ NG ++A + M
Sbjct: 323 --VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 269 QLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIR-RLLGYDLLMMNSLMDFYSKSN 327
+ +V PD T+ +++S CA L G +H A R L+ Y +++ N+L++ YSK
Sbjct: 381 EQ-DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY-VVVANALIEMYSKCK 438
Query: 328 SLSKAELLFNAIAPMNDLVSWNSMISGL------------FKEMLYLCSQFSFSTLLAIL 375
+ KA +F+ I P D++SW S+I+GL F++ML L + + TL+A L
Sbjct: 439 CIDKALEVFHNI-PEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAAL 496
Query: 376 PSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDT 435
+C +L GK IH L+ G + NAL+ +Y+ CG + A++ Q SH D
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN--QFNSHEKDV 554
Query: 436 SCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEG 490
WNI++ +G A++ F M + +PD VT ++++ AC + +G
Sbjct: 555 VSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQG 608
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 5e-63
Identities = 132/460 (28%), Positives = 219/460 (47%), Gaps = 25/460 (5%)
Query: 2 GFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFF 61
GF + +L+T Y S+ +F +D ++WNAMI+ EN + GL F
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276
Query: 62 GEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121
M E + D T+ ++SA + + GR +H +K G D S+CN + MY
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 122 GDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAV 181
G +E FS M D VSW ++SG N P+K L + M D ++++S +
Sbjct: 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396
Query: 182 AASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKD 241
+A ACLG+L G +H L + G YV V N+LI MYS+C I+ A F + KD
Sbjct: 397 SACACLGDLDVGVKLHELAERKGL--ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454
Query: 242 VVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVH 301
V+SW +II G LN + EA +M L +++P+ T++ +S CA L G+ +H
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIH 512
Query: 302 GYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------- 354
+ +R +G+D + N+L+D Y + ++ A FN+ D+VSWN +++G
Sbjct: 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE--KDVVSWNILLTGYVAHGKG 570
Query: 355 -----LFKEMLYLCSQFSFSTLLAILPSCNSP----ESLEFGKSIHCWQLKLGFSNNTIG 405
LF M+ T +++L +C+ + LE+ H + K + N
Sbjct: 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY---FHSMEEKYSITPNLKH 627
Query: 406 VNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVAC 445
++ + G L A++ + ++ D + W ++ AC
Sbjct: 628 YACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 2e-54
Identities = 143/531 (26%), Positives = 244/531 (45%), Gaps = 48/531 (9%)
Query: 246 NAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAI 305
N+ + +G+ E+A LL MQ +R V D V L LC + EG V A+
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL 113
Query: 306 RRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG----------- 354
+ + N+++ + + L A +F P DL SWN ++ G
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVF-GKMPERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 355 -LFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMY 413
L+ ML+ + T +L +C L G+ +H ++ GF + VNAL+ MY
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232
Query: 414 INCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVT 473
+ CGD+V+A + R+ D WN +I +NG E ++ F +M ++ + PD +T
Sbjct: 233 VKCGDVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMT 290
Query: 474 LVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY 533
+ +VISAC L G+ +HG +K+ +D V N+LI MY A VF
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 534 NCNLCTWNCMISAFSQNKAEVRALELFRHLEFE---PNEISIVSILSACTQLGVLRHGKQ 590
+ +W MIS + +N +ALE + +E + P+EI+I S+LSAC LG L G +
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 591 IHGHVFHLGFQENSFISSALLDMYSNC---------------KSNAAWSSMISAYGYHGK 635
+H G +++AL++MYS C K +W+S+I+ + +
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR 470
Query: 636 GWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEE----YDVRPET 691
+EA+ F +M + ++P ++I+ LSAC+ G + G + + ++L P
Sbjct: 471 CFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529
Query: 692 EHHVCIVDMLGRSGKLQEAY-EFIKNLPIQPKPGVWGAMLSACSHHGDTKM 741
++D+ R G++ A+ +F + + W +L+ HG M
Sbjct: 530 -----LLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSM 572
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (431), Expect = 3e-44
Identities = 116/417 (27%), Positives = 189/417 (45%), Gaps = 34/417 (8%)
Query: 58 LHFFGEMVEEGIRFD--STTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFV 115
L F E++E G F ++T +V A + ++ + V+ +G D + N +
Sbjct: 107 LELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165
Query: 116 NMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNV 175
M+ KCG L + F M + SW TI+ G + + FREM G A+
Sbjct: 166 LMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225
Query: 176 SLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFW 235
+ + ASA LG G+ +H +K G +VS +LI MYS+CGDIE A F
Sbjct: 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC--ALIDMYSKCGDIEDARCVFD 283
Query: 236 GMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLR 295
GM K V+WN+++ G+AL+G EEA L +EM+ V D T +I + + LL
Sbjct: 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLE 342
Query: 296 EGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG- 354
+ H IR D++ +L+D YSK + A +F+ + P +L+SWN++I+G
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM-PRKNLISWNALIAGY 401
Query: 355 -----------LFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNT 403
+F+ M+ + T LA+L +C E G I + N+
Sbjct: 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI----FQSMSENHR 457
Query: 404 IGVNALMHMYINC--------GDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQ 452
I A M+ C G L A+++++R + W ++ AC + + +
Sbjct: 458 IKPRA---MHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE 511
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 3e-37
Identities = 93/361 (25%), Positives = 177/361 (49%), Gaps = 18/361 (4%)
Query: 1 RGFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHF 60
GF + SL+ Y ++ + + +F KD V+W AMI+ +N L
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376
Query: 61 FGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAK 120
+ M ++ + D T+ ++SA + L G +H L+ + G+I+ + N + MY+K
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436
Query: 121 CGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSA 180
C ++ + F + D +SW +I++G NN + L++FR+M + + ++V+L +A
Sbjct: 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAA 495
Query: 181 VAASACLGELSYGKVIHALGIK--LGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMT 238
++A A +G L GK IHA ++ +G++ + N+L+ +Y +CG + A F
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTGIGFDG----FLPNALLDLYVRCGRMNYAWNQF-NSH 550
Query: 239 CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREG- 297
KDVVSWN ++ G+ +GK A +L + M V PD T ++L+ C+ S ++ +G
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQGL 609
Query: 298 ----RSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMIS 353
Y+I +L ++D ++ L++A N + D W ++++
Sbjct: 610 EYFHSMEEKYSITP----NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665
Query: 354 G 354
Sbjct: 666 A 666
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-36
Identities = 78/272 (28%), Positives = 141/272 (51%), Gaps = 3/272 (1%)
Query: 29 LFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNC 88
LF E +++ +W +I V+ F EM E+G + T ++++ A +
Sbjct: 180 LFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239
Query: 89 LKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSG 148
+ G+ +HC +K G++ D+ + ++MY+KCGD+ + C F GM TV+WN++++G
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299
Query: 149 CLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDS 208
+ Y E+ L + EM SG D + S + + L L + K HA I+ G+
Sbjct: 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-L 358
Query: 209 PYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEM 268
V+ T +L+ +YS+ G +E A F M K+++SWNA+I G+ +G+ +A ++ M
Sbjct: 359 DIVANT-ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417
Query: 269 QLMRSVEPDIATVVTLISLCADSLLLREGRSV 300
+ V P+ T + ++S C S L +G +
Sbjct: 418 -IAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 3e-34
Identities = 125/531 (23%), Positives = 223/531 (41%), Gaps = 52/531 (9%)
Query: 249 IDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRL 308
I+ G+ EA +L ++ +T L+ C +R ++V+ +
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 309 LGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG------------LF 356
D MMN ++ + K L A LF+ + P +L SW ++I G LF
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEM-PERNLASWGTIIGGLVDAGNYREAFALF 212
Query: 357 KEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINC 416
+EM S T + +L + S G+ +HC LK G +T AL+ MY C
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 417 GDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVN 476
GD+ A + + + T WN ++ +G+ +EA+ + M + S D T
Sbjct: 273 GDIEDARCVFDGMPEKT-TVAWNSMLAGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSI 330
Query: 477 VISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCN 536
+I L L K H +++ LD AL+ +Y + ++ A VF+ N
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390
Query: 537 LCTWNCMISAFSQNKAEVRALELFRHLEFE---PNEISIVSILSACTQLGVLRHGKQIHG 593
L +WN +I+ + + +A+E+F + E PN ++ +++LSAC G+ G +I
Sbjct: 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI-- 448
Query: 594 HVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP 653
F + + A M+ C MI G G EA + + +P
Sbjct: 449 --FQSMSENHRIKPRA---MHYAC--------MIELLGREGLLDEAYAMIRR---APFKP 492
Query: 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEE-YDVRPET-EHHVCIVDMLGRSGKLQEAY 711
T + +LL+AC + + L+ E+ Y + PE ++V ++++ SG+ EA
Sbjct: 493 TVNMWAALLTACR----IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548
Query: 712 EFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFK--LEPENVGYY 760
+ ++ L + G+ +M AC+ ++ KQ L P++ Y
Sbjct: 549 KVVETL---KRKGL--SMHPACTW---IEVKKQDHSFFSGDRLHPQSREIY 591
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 8e-22
Identities = 97/407 (23%), Positives = 169/407 (41%), Gaps = 63/407 (15%)
Query: 430 SHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFE 489
S +S T N + A +G ++A+K +SM Q+ D V + C E
Sbjct: 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFRLCEWKRAVEE 104
Query: 490 GKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQ 549
G + AL S L R+ NA+++M+ R ++ A VF +L +WN ++ +++
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK 164
Query: 550 NKAEVRALELFRHLEF---EPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFI 606
AL L+ + + P+ + +L C + L G+++H HV GF+ + +
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224
Query: 607 SSALLDMYSNC---------------KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGI 651
+AL+ MY C + +W++MIS Y +G+ E +ELF M +
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 652 RPTKSSVISLLSACS-----------HSGLVDEG----LQYYNNMLEEYD---------- 686
P ++ S++SAC H +V G + N++++ Y
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
Query: 687 --VRPETEHHVCIVDML------GRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGD 738
R ET+ V M+ G K E Y ++ + P ++LSAC+ GD
Sbjct: 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404
Query: 739 TKMGKQVAELLFKLEPENVGY--YI----SLSNMYVALGRWKDAVEI 779
+G ++ EL E G Y+ +L MY A+E+
Sbjct: 405 LDVGVKLHEL-----AERKGLISYVVVANALIEMYSKCKCIDKALEV 446
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 9e-11
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 240 KDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLIS-LC 288
DVV++N +IDG+ GK EEA L +EM+ R ++P++ T LI LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMK-KRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-09
Identities = 42/187 (22%), Positives = 79/187 (42%)
Query: 10 STSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGI 69
S +L+ YS E + +F K V WN+M+ + L + EM + G+
Sbjct: 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321
Query: 70 RFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSEC 129
D T I++ +++ L+ + H I+ G D V++Y+K G + +
Sbjct: 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
Query: 130 TFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGE 189
F M + +SWN +++G ++ K + F M G ++V+ + ++A G
Sbjct: 382 VFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 190 LSYGKVI 196
G I
Sbjct: 442 SEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 35/144 (24%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 613 MYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVD 672
+ ++CK ++++IS GK E+FHEM N+G+ + +L+ C+ +G V
Sbjct: 468 LKADCK---LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524
Query: 673 EGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-----PIQPKPGVWG 727
+ Y M + +V+P+ ++ G+SG + A++ + + PI P G
Sbjct: 525 KAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG 583
Query: 728 AMLSACSHHGDTKMGKQVAELLFK 751
A++ AC++ G K+V +++ +
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHE 607
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 625 SMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEE 684
+++ A G+ A E++ + I+ T +++CS G D L Y++M ++
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643
Query: 685 YDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQP-KPG--VWGAMLSACSHHGDTKM 741
V+P+ +VD+ G +G L +A+E +++ Q K G + +++ ACS+ + K
Sbjct: 644 -GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 742 GKQVAELL--FKLEP 754
++ E + KL P
Sbjct: 703 ALELYEDIKSIKLRP 717
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 241 DVVSWNAIIDGFALNGKFEEAFDLLHEMQ 269
DVV++N +IDG G+ +EA +LL EM+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 9e-06
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 36 KDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSAL 83
DVVT+N +I + V L F EM + GI+ + T I++ L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 243 VSWNAIIDGFALNGKFEEAFDLLHEMQ 269
V++N++I G+ GK EEA +L EM+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 243 VSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDI 278
V++N +IDG G+ EEA +L EM+ R +EPD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMK-ERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 4e-05
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH 667
++++I Y GK EA++LF+EM GI+P + L+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGI 651
++S+IS Y GK EA+ELF EM G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 6e-05
Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 33/197 (16%)
Query: 404 IGVNALMHMYINCGDLVAAFSLLQRISHNSDT----SCWNIVIVACTQNGHFQEAIKTFK 459
I V ALM N G + A + Q I H + + I + +C+Q G + A+ +
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQMI-HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638
Query: 460 SMTQQQNASPDSV---TLVNVISACGNLELAFE--------GKSLHGLALKSLMGLDTRV 508
M ++ PD V LV+V G+L+ AFE G L ++ SLMG +
Sbjct: 639 DMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
Query: 509 QN---ALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELF---RH 562
+N AL +Y + IK TV T N +I+A + +ALE+ +
Sbjct: 698 KNWKKAL-ELYEDIKSIKLRPTV---------STMNALITALCEGNQLPKALEVLSEMKR 747
Query: 563 LEFEPNEISIVSILSAC 579
L PN I+ +L A
Sbjct: 748 LGLCPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (105), Expect = 6e-05
Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 4/175 (2%)
Query: 609 ALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHS 668
L++ A ++ GK EA+EL + P + + L A
Sbjct: 84 KALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL 143
Query: 669 GLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKN---LPIQPKPG 724
G +E L+ Y LE E E + + +L G+ +EA E ++ L
Sbjct: 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE 203
Query: 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779
+ G + + E +L+P+N +L+ + + LGR+++A+E
Sbjct: 204 ALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEA 258
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 434 DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGN 483
D +N +I + G +EA+K F M +++ P+ T +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 57/256 (22%), Positives = 108/256 (42%), Gaps = 41/256 (16%)
Query: 516 YG--RCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFE-----PN 568
YG R +++K VF N +ISA Q+ A RA ++ ++ E P+
Sbjct: 530 YGIMRSKNVKPDRVVF-----------NALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578
Query: 569 EISIVSILSACTQLGVLRHGKQIHG--HVFHL-GFQE------NSFISSALLD----MYS 615
I++ +++ AC G + K+++ H +++ G E NS D +Y
Sbjct: 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638
Query: 616 NCKSNAA------WSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG 669
+ K +S+++ G+ G +A E+ + GI+ S SL+ ACS++
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
Query: 670 LVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEF---IKNLPIQPKPGVW 726
+ L+ Y + ++ +RP ++ L +L +A E +K L + P +
Sbjct: 699 NWKKALELYED-IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757
Query: 727 GAMLSACSHHGDTKMG 742
+L A D +G
Sbjct: 758 SILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 39 VTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDS 73
VT+N +I + V L F EM E GI D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 39 VTWNAMITACVENRCVVMGLHFFGEMVEEGI 69
VT+N++I+ + + L F EM E+G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 781 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.8 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.75 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.61 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.57 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.47 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.43 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.42 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.42 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.39 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.37 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.36 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.33 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.27 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.27 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.26 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.24 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.2 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.19 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.19 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.17 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.14 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.12 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.08 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.08 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.06 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.04 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.03 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.03 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.03 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.03 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.02 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.01 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.01 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.0 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.98 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.96 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.95 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.92 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.89 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.87 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.81 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.78 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.75 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.75 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.73 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.69 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.67 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.61 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.59 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.54 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.5 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.42 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.41 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.41 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.39 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.39 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.38 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.38 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.36 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.36 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.36 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.34 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.33 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.28 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.27 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.26 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.25 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.24 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.2 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.19 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.18 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.15 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.1 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.08 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.05 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.98 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.96 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.95 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.94 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.92 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.91 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.9 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.84 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.82 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.8 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.76 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.71 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.71 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.68 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.66 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.64 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.63 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.62 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.61 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.59 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.58 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.56 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.55 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.52 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.51 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.49 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.47 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.47 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.46 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.42 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.41 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.39 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.37 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.37 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.37 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.37 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.33 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.29 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.28 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.27 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.24 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.23 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.21 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.21 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.2 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.17 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.14 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.13 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.13 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.08 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.0 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.96 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.94 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.93 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.91 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.9 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.85 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.76 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.71 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.64 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.62 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.58 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.56 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.55 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.54 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.42 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.42 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.36 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.26 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.25 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.25 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.24 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.2 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.17 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.08 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.05 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.03 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.03 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.02 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.0 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.94 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.93 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.92 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.91 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.9 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.88 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.82 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.72 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.63 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.6 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.55 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.4 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.33 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.21 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.2 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.15 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.15 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.14 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.1 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.81 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.42 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.42 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.42 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.41 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.32 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.26 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.19 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.96 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.93 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.87 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 93.74 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.63 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.58 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.56 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.49 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.34 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.3 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.29 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.26 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.16 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.04 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.03 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.59 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.58 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.35 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.08 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.95 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.75 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.54 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.4 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.17 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.17 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.11 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.09 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.94 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.74 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.2 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.8 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.75 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.7 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.2 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.95 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 88.71 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.55 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.14 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.84 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.65 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.53 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.5 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 87.29 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.17 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.81 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.71 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.69 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 86.35 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.2 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.11 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.09 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.96 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.87 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.13 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.13 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 84.89 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 84.54 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 83.83 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.72 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 83.7 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.07 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.99 | |
| PF06957 | 422 | COPI_C: Coatomer (COPI) alpha subunit C-terminus; | 82.65 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.41 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.2 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 82.18 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.06 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.8 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 81.45 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.18 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.16 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 81.01 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 80.94 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.83 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.6 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 80.32 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-93 Score=801.63 Aligned_cols=652 Identities=33% Similarity=0.638 Sum_probs=633.5
Q ss_pred CCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhH
Q 035828 35 NKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVF 114 (781)
Q Consensus 35 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 114 (781)
.++..++|.++.+|++.|++++|+.+|+.|.+.|++|+..+|..++.+|.+.+..+.+.+++..+.+.+..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHH
Q 035828 115 VNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGK 194 (781)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 194 (781)
|.+|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 035828 195 VIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSV 274 (781)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 274 (781)
+++..+.+.|+.++ ..++|+||.+|+++|+++.|.++|++|+.||..+||++|.+|++.|++++|+++|++|.+.| +
T Consensus 208 ~~~~~~~~~g~~~~--~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~ 284 (857)
T PLN03077 208 EVHAHVVRFGFELD--VDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-V 284 (857)
T ss_pred HHHHHHHHcCCCcc--cchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-C
Confidence 99999999999876 99999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred CCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHH
Q 035828 275 EPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG 354 (781)
Q Consensus 275 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~ 354 (781)
.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+||+|+.+|++.|++++|.++|++|.
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------------- 350 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-------------- 350 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--------------
Confidence 999999999999999999999999999999999999999999999998888888888888887774
Q ss_pred HHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC
Q 035828 355 LFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSD 434 (781)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 434 (781)
.||
T Consensus 351 -----------------------------------------------------------------------------~~d 353 (857)
T PLN03077 351 -----------------------------------------------------------------------------TKD 353 (857)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 468
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 035828 435 TSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALIT 514 (781)
Q Consensus 435 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 514 (781)
..+|+++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|++
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 8899999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc--CCCCCHhHHHHHHHHhcccCchHHHHHHH
Q 035828 515 MYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL--EFEPNEISIVSILSACTQLGVLRHGKQIH 592 (781)
Q Consensus 515 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 592 (781)
+|+++|++++|.++|++|.++|+++|+.+|.+|++.|+.++|+.+|++| ++.||..||+.++.+|++.|+++.+.+++
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 9999999999999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHhhhcC--------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 035828 593 GHVFHLGFQENSFISSALLDMYSNC--------------KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSV 658 (781)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 658 (781)
..+.+.|+.++..++++|+++|+++ +|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 9999999999999999999999998 78899999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 035828 659 ISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGD 738 (781)
Q Consensus 659 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 738 (781)
+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|+.+|+..+|++++.+|..+|+
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999977799999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 739 TKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 739 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
.+.|+...+++++++|+++..|..|+++|...|+|++|.++++
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999998863
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-84 Score=734.09 Aligned_cols=597 Identities=27% Similarity=0.447 Sum_probs=572.7
Q ss_pred CCCCCCccchhHHHHHhhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHH
Q 035828 2 GFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVS 81 (781)
Q Consensus 2 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 81 (781)
|+.|+..++|+|+.+|.+.|+++.|+++|++|+.||+.+||.+|.+|++.|++++|+.+|++|...|+.||..||+.+++
T Consensus 116 ~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 116 HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHH
Q 035828 82 ALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLY 161 (781)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 161 (781)
+|+..+++..+.+++..|.+.|+.|++.++++||.+|++.|++++|.++|++|++||..+||+||.+|++.|++++|+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCC
Q 035828 162 FREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKD 241 (781)
Q Consensus 162 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 241 (781)
|++|.+.|+.||..||+.++.+|+..|+.+.+.+++..+.+.|+.++ ..+||+||.+|++.|++++|.++|++|..||
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d--~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 353 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD--VSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc--hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Confidence 99999999999999999999999999999999999999999999876 9999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHH
Q 035828 242 VVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMD 321 (781)
Q Consensus 242 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 321 (781)
..+||.+|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|++
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 9999999999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCC
Q 035828 322 FYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSN 401 (781)
Q Consensus 322 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 401 (781)
+|++.|++++|.++|++|.+
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~------------------------------------------------------------ 452 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPE------------------------------------------------------------ 452 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCC------------------------------------------------------------
Confidence 98888888888888887743
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHh
Q 035828 402 NTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISAC 481 (781)
Q Consensus 402 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 481 (781)
+|..+|+++|.+|++.|+.++|+.+|++|.. + +.||..||..++.+|
T Consensus 453 -------------------------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 453 -------------------------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLIAALSAC 499 (857)
T ss_pred -------------------------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHHHHHHHH
Confidence 6888999999999999999999999999975 4 999999999999999
Q ss_pred cCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHh
Q 035828 482 GNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 482 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
++.|+.+.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|+++||++|.+|+++|+.++|+++|+
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred hc---CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHH-HhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChH
Q 035828 562 HL---EFEPNEISIVSILSACTQLGVLRHGKQIHGHVF-HLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGW 637 (781)
Q Consensus 562 ~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 637 (781)
+| |+.||..||+.++.+|++.|.+++|.++|+.|. +.|+.|+.. +|+.++++|++.|+++
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~----------------~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK----------------HYACVVDLLGRAGKLT 642 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH----------------HHHHHHHHHHhCCCHH
Confidence 99 699999999999999999999999999999998 789999887 5777777788999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHh
Q 035828 638 EAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKN 716 (781)
Q Consensus 638 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (781)
+|.+++++|. ++||..+|++|+.+|...|+.+.+....+++.+ +.|+ ...|..|.+.|.+.|+|++|.++.+.
T Consensus 643 eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~---l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 643 EAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE---LDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---hCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 9999999995 899999999999999999999999999988874 5776 67888999999999999999999888
Q ss_pred C
Q 035828 717 L 717 (781)
Q Consensus 717 ~ 717 (781)
|
T Consensus 717 M 717 (857)
T PLN03077 717 M 717 (857)
T ss_pred H
Confidence 8
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-68 Score=582.71 Aligned_cols=532 Identities=17% Similarity=0.155 Sum_probs=487.0
Q ss_pred CCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcC-CCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHH
Q 035828 69 IRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGM-IADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMS 147 (781)
Q Consensus 69 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 147 (781)
..++...|..++..+++.|++++|.++|++|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|..||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 356788899999999999999999999999999985 5677888899999999999999999999999999999999999
Q ss_pred HHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCCh
Q 035828 148 GCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDI 227 (781)
Q Consensus 148 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 227 (781)
+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|..+++.|.+.|+.++ ..+|+.+|.+|++.|++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd--vvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN--VHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCcCH
Confidence 9999999999999999999999999999999999999999999999999999999998766 99999999999999999
Q ss_pred hHHHHHhccCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHH--cCCCCCCHHHHHHHHHHHhcccchhhhhhHH
Q 035828 228 EAAERAFWGMT----CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQL--MRSVEPDIATVVTLISLCADSLLLREGRSVH 301 (781)
Q Consensus 228 ~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 301 (781)
++|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.. .+ +.||..||+++|.+|++.|++++|.++|
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999996 68999999999999999999999999999986 44 9999999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCC
Q 035828 302 GYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSP 381 (781)
Q Consensus 302 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 381 (781)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|..++.+|++.
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~--------------------~Gv~PD~~TynsLI~a~~k~ 662 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK--------------------KGVKPDEVFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------------cCCCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999977 89999999999999999999
Q ss_pred cchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcC---CCCcccHHHHHHHHHhCCChHHHHHHH
Q 035828 382 ESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISH---NSDTSCWNIVIVACTQNGHFQEAIKTF 458 (781)
Q Consensus 382 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~ 458 (781)
|+++.|.+++..|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.. .||..+|+++|.+|++.|++++|.++|
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999953 589999999999999999999999999
Q ss_pred HHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhh------hc
Q 035828 459 KSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFE------SC 532 (781)
Q Consensus 459 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~~ 532 (781)
++|.+.| +.||..||+.++.+|++.|+++.|.+++.+|.+.|+.||..+|++++..+. +.+++|.++.+ .+
T Consensus 743 ~eM~~~G-i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 743 SEMKRLG-LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhcc
Confidence 9999998 999999999999999999999999999999999999999999999997643 23444444433 22
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHhhc---CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHH
Q 035828 533 YNCNLCTWNCMISAFSQNKAEVRALELFRHL---EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSA 609 (781)
Q Consensus 533 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 609 (781)
...+...| .++|+.+|++| |+.||..||+.++.++.+.+..+.+..+++.|...+..|+..
T Consensus 820 ~~~~~n~w------------~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~---- 883 (1060)
T PLN03218 820 RPQIENKW------------TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS---- 883 (1060)
T ss_pred ccccccch------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh----
Confidence 22222233 35699999999 799999999999988888889998888888887777777766
Q ss_pred HHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 035828 610 LLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS 656 (781)
Q Consensus 610 l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 656 (781)
+|+++|+++++ ..++|..++++|...|+.|+..
T Consensus 884 ------------~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 884 ------------NLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ------------hhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence 56666666632 2368999999999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-67 Score=574.37 Aligned_cols=527 Identities=16% Similarity=0.159 Sum_probs=464.1
Q ss_pred CCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHH
Q 035828 171 QADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIID 250 (781)
Q Consensus 171 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 250 (781)
.++...|..++..+++.|+++.|..+++.|.+.+..+ |+..+++.++.+|.+.|.+++|.++|+.|..||..+|+.+|.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~-~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD-MDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3444555555666666666666666666666555321 347778888999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 035828 251 GFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLS 330 (781)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 330 (781)
+|++.|+++.|.++|++|.+.| +.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 9999999999999999999988 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHH--hcCCCchhHHHH
Q 035828 331 KAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLK--LGFSNNTIGVNA 408 (781)
Q Consensus 331 ~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~ 408 (781)
+|.++|+.|.. .|+.||..+|+.++.+|++.|+++.|.+++.+|.. .|+.||..+|+.
T Consensus 525 eAl~lf~~M~~--------------------~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 525 KAFGAYGIMRS--------------------KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred HHHHHHHHHHH--------------------cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 99999998876 78999999999999999999999999999999976 689999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCcc
Q 035828 409 LMHMYINCGDLVAAFSLLQRISHN---SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLE 485 (781)
Q Consensus 409 li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 485 (781)
+|.+|++.|++++|.++|+.|... |+..+|+++|.+|++.|++++|.++|++|.+.| +.||..||+.++.+|++.|
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999654 788999999999999999999999999999998 9999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC----CCChhhHHHHHHHHHhCCChhHHHHHHh
Q 035828 486 LAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY----NCNLCTWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
++++|.+++++|.+.|+.|+..+|++||.+|++.|++++|.++|++|. .|++.+|+.+|.+|++.|++++|+++|+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 6899999999999999999999999999
Q ss_pred hc---CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhc----C----CChhhHHHHHHHH
Q 035828 562 HL---EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSN----C----KSNAAWSSMISAY 630 (781)
Q Consensus 562 ~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----~~~~~~~~li~~~ 630 (781)
+| |+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|++++..+.+ + .....|+. ....
T Consensus 744 eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~-g~~~ 822 (1060)
T PLN03218 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDS-GRPQ 822 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc-cccc
Confidence 99 69999999999999999999999999999999999999999999999866321 1 01111110 0111
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 710 (781)
...+..+.|+.+|++|++.|+.||..||+.++.++++.++.+.+..+++.|... +..|+..+|+.|++++.+. .++|
T Consensus 823 ~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A 899 (1060)
T PLN03218 823 IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRA 899 (1060)
T ss_pred cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHH
Confidence 123456789999999999999999999999998888899999999999888544 6677789999999998432 3689
Q ss_pred HHHHHhC---CCCCCcc
Q 035828 711 YEFIKNL---PIQPKPG 724 (781)
Q Consensus 711 ~~~~~~~---~~~p~~~ 724 (781)
..++++| ++.|+..
T Consensus 900 ~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 900 FSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHcCCCCCcc
Confidence 9999988 6777654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-66 Score=570.17 Aligned_cols=511 Identities=24% Similarity=0.330 Sum_probs=470.0
Q ss_pred CCcchhhHHHHHHHhcCCchhhHHHHHHHHhcC-CCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhH
Q 035828 36 KDVVTWNAMITACVENRCVVMGLHFFGEMVEEG-IRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVF 114 (781)
Q Consensus 36 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 114 (781)
++..+|+.+|.+|.+.|++++|+.+|+.|...+ ..||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 356689999999999999999999999999865 7899999999999999999999999999999999999999999999
Q ss_pred HHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHH
Q 035828 115 VNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGK 194 (781)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 194 (781)
+.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||..++.+|+..|..+.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 035828 195 VIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSV 274 (781)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 274 (781)
+++..+.+.|..++ ..+|++||.+|+++|++++|.++|++|+++|+.+||.+|.+|++.|++++|+++|++|.+.| +
T Consensus 245 ~l~~~~~~~g~~~d--~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~ 321 (697)
T PLN03081 245 QLHCCVLKTGVVGD--TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-V 321 (697)
T ss_pred HHHHHHHHhCCCcc--ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C
Confidence 99999999998877 99999999999999999999999999999999999999999999999999999999999988 9
Q ss_pred CCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHH
Q 035828 275 EPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISG 354 (781)
Q Consensus 275 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~ 354 (781)
.||..||++++.+|++.|+++.|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|.
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-------------- 387 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-------------- 387 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--------------
Confidence 999999999999999999999999999999999999999889888888888888888888887774
Q ss_pred HHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC
Q 035828 355 LFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSD 434 (781)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 434 (781)
+||
T Consensus 388 -----------------------------------------------------------------------------~~d 390 (697)
T PLN03081 388 -----------------------------------------------------------------------------RKN 390 (697)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 468
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHH-hcCCCChHHHHHHH
Q 035828 435 TSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALK-SLMGLDTRVQNALI 513 (781)
Q Consensus 435 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li 513 (781)
..+||++|.+|++.|+.++|+++|++|.+.| +.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 8999999999999999999999999999998 999999999999999999999999999999976 69999999999999
Q ss_pred HHHHhcCChHHHHHHhhhcC-CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHH
Q 035828 514 TMYGRCRDIKSASTVFESCY-NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQ 590 (781)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 590 (781)
++|++.|++++|.+++++|. .|+..+|++++.+|..+|+.+.|...++++ +..|+ ..+|..++..|++.|++++|.+
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999997 789999999999999999999999999999 77785 6799999999999999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHH-------HHHHHHhc----CChHHHHHHHHHHHhCCCCCCHH
Q 035828 591 IHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSS-------MISAYGYH----GKGWEAIELFHEMCNSGIRPTKS 656 (781)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------li~~~~~~----~~~~~A~~~~~~m~~~g~~p~~~ 656 (781)
+++.|.+.|+...+.. +|.. .+.+-..+ .-++...++..+|++.|..||..
T Consensus 550 v~~~m~~~g~~k~~g~---------------s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 550 VVETLKRKGLSMHPAC---------------TWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHcCCccCCCe---------------eEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999998754321 1100 00000001 11345567888899999999853
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-65 Score=563.90 Aligned_cols=468 Identities=27% Similarity=0.472 Sum_probs=441.4
Q ss_pred CCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcC-CCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHH
Q 035828 136 CADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSG-EQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVT 214 (781)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~ 214 (781)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.+++..+.+.|+.++ ..+|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~--~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD--QYMM 161 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc--hHHH
Confidence 4577899999999999999999999999998864 789999999999999999999999999999999998866 9999
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccch
Q 035828 215 NSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLL 294 (781)
Q Consensus 215 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~ 294 (781)
+.|+.+|++.|+++.|.++|++|+.||..+||.+|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|..
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999999999999999999999999999999999999999988 999999999999999999999
Q ss_pred hhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhh
Q 035828 295 REGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAI 374 (781)
Q Consensus 295 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l 374 (781)
+.+.+++..+.+.|+.||..++++|+++|++.|++++|.++|+.|..
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------------------------- 287 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--------------------------------- 287 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---------------------------------
Confidence 99999999999988888888888888888888888888888877743
Q ss_pred hcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHH
Q 035828 375 LPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEA 454 (781)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 454 (781)
+|+.+||++|.+|++.|+.++|
T Consensus 288 ----------------------------------------------------------~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 288 ----------------------------------------------------------KTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred ----------------------------------------------------------CChhHHHHHHHHHHhCCCHHHH
Confidence 6888999999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC
Q 035828 455 IKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN 534 (781)
Q Consensus 455 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 534 (781)
+++|++|.+.| +.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.+
T Consensus 310 ~~lf~~M~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 310 LCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999999998 99999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhh
Q 035828 535 CNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMY 614 (781)
Q Consensus 535 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 614 (781)
+|+.
T Consensus 389 ~d~~---------------------------------------------------------------------------- 392 (697)
T PLN03081 389 KNLI---------------------------------------------------------------------------- 392 (697)
T ss_pred CCee----------------------------------------------------------------------------
Confidence 6544
Q ss_pred hcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchH
Q 035828 615 SNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHH 694 (781)
Q Consensus 615 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 694 (781)
+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|
T Consensus 393 -------t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 393 -------SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred -------eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 4555666677888889999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
+.++++|++.|++++|.+++++++..|+..+|++++.+|..+|+.+.|..+++++.+..|+++..|..|+++|.+.|+|+
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcC
Q 035828 775 DAVEIGK 781 (781)
Q Consensus 775 ~A~~l~~ 781 (781)
+|.++++
T Consensus 546 ~A~~v~~ 552 (697)
T PLN03081 546 EAAKVVE 552 (697)
T ss_pred HHHHHHH
Confidence 9999863
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=378.30 Aligned_cols=754 Identities=10% Similarity=-0.008 Sum_probs=447.7
Q ss_pred ccchhHHHHHhhcCCchhHHHHhhhhcC----CCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHH
Q 035828 8 PTSTSLLTAYSNVSYFESSLALFYETCN----KDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSAL 83 (781)
Q Consensus 8 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 83 (781)
.....+.+.+...|++++|.+.|..... .....+..+...+...|+++.|...|+++.+.. +.+...+..+...+
T Consensus 91 ~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 169 (899)
T TIGR02917 91 QVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLA 169 (899)
T ss_pred hhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHH
Confidence 4445566667777777777777765431 123445556666666777777777777766553 23445666666666
Q ss_pred hccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCC---CCCeeehHHHHHHHhhCCChhhHHH
Q 035828 84 TQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMH---CADTVSWNTIMSGCLHNNYPEKCLL 160 (781)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~ 160 (781)
...|++++|..+++.+.+.. +++...+..+...+...|++++|...|+... ..+...+..++..+...|++++|..
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 248 (899)
T TIGR02917 170 LAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEK 248 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 67777777777777766553 3445566666666666777777777666553 2244556666666666677777776
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC--
Q 035828 161 YFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMT-- 238 (781)
Q Consensus 161 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-- 238 (781)
.++.+.+.... +...+......+...|+++.|...+....+..... ...+..+...+...|+++.|...|+...
T Consensus 249 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 324 (899)
T TIGR02917 249 HADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEY---LPALLLAGASEYQLGNLEQAYQYLNQILKY 324 (899)
T ss_pred HHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666554321 12222222223344566666666666555544221 1122233334455556666655555543
Q ss_pred -CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHH
Q 035828 239 -CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMN 317 (781)
Q Consensus 239 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 317 (781)
+.+...+..+...+.+.|++++|...++.+.... ..+...+..+...+.+.|++++|.+.++.+.+.... +...+.
T Consensus 325 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 401 (899)
T TIGR02917 325 APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAART 401 (899)
T ss_pred CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 1233444455555555555555555555555432 233444555555555555555555555555543321 334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCC-CCe-eeHHHHHHH------------HHHHHHHhcccCCchhhhhhhcccCCCcc
Q 035828 318 SLMDFYSKSNSLSKAELLFNAIAPM-NDL-VSWNSMISG------------LFKEMLYLCSQFSFSTLLAILPSCNSPES 383 (781)
Q Consensus 318 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~ll~~------------l~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 383 (781)
.+...+...|++++|.+.++.+... ++. .....+... .+..+. ...+.+..++..+...+...|+
T Consensus 402 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 480 (899)
T TIGR02917 402 QLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLE-KKQPDNASLHNLLGAIYLGKGD 480 (899)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHHhCCC
Confidence 4555555555555555555544331 110 111111111 111111 1122334445555555556666
Q ss_pred hhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-C-CcccHHHHHHHHHhCCChHHHHHHHHHH
Q 035828 384 LEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN-S-DTSCWNIVIVACTQNGHFQEAIKTFKSM 461 (781)
Q Consensus 384 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~A~~~~~~m 461 (781)
.+.|.+.+..+.+.. +.+...+..+...+...|++++|.+.++++... | +..++..+...+.+.|+.++|...++++
T Consensus 481 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 481 LAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred HHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666655432 223344455555666666666666666655321 2 3445555556666666666666666666
Q ss_pred HHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChh
Q 035828 462 TQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLC 538 (781)
Q Consensus 462 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~ 538 (781)
.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+..+|.+.|++++|...|+.+. +.+..
T Consensus 560 ~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 636 (899)
T TIGR02917 560 AELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL 636 (899)
T ss_pred HHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 5542 2333444455555666666666666666555432 3345555666666666666666666665543 22334
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhc
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSN 616 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 616 (781)
.+..+...+...|++++|+..|+++ ...| +..++..+...+...|+++.|..+++.+.+.+.. +...+..+...+..
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHH
Confidence 5555556666666666666666665 4334 3445555555556666666666666655554322 22222222222222
Q ss_pred C-----------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHH
Q 035828 617 C-----------------KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYN 679 (781)
Q Consensus 617 ~-----------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 679 (781)
. |+..++..++..+...|++++|.+.++++.+. .+.+...+..+...|...|++++|.+.|+
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 1 44456777888899999999999999999875 34467788888889999999999999999
Q ss_pred HhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 680 NMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 680 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
++.+. .| ++..+..++..+...|+ .+|+++++++ ...| +...+..+...+...|++++|...++++++.+|.+
T Consensus 795 ~~~~~---~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 795 TVVKK---APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred HHHHh---CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99865 44 46788999999999999 8899999877 4444 45567788888999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCChhhHHhhcC
Q 035828 757 VGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 757 ~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
+.++..++.+|.+.|++++|+++++
T Consensus 871 ~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 871 AAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999998863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=370.22 Aligned_cols=748 Identities=12% Similarity=0.020 Sum_probs=498.9
Q ss_pred hHHHHHhhcCCchhHHHHhhhh---cCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCC-------------------
Q 035828 12 SLLTAYSNVSYFESSLALFYET---CNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGI------------------- 69 (781)
Q Consensus 12 ~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------------- 69 (781)
.....+.+.|++++|...|++. ...+...+..+...+.+.|+++.|...++++.+.+.
T Consensus 27 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 106 (899)
T TIGR02917 27 EAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKF 106 (899)
T ss_pred HHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCH
Confidence 3444555566666666666552 122344455555566666666666666666555442
Q ss_pred ---------------CCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccC
Q 035828 70 ---------------RFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGM 134 (781)
Q Consensus 70 ---------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 134 (781)
+.....+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|..+++.+
T Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred HHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1222334444444445555555555555555443 223344555555555555555555555544
Q ss_pred C---CCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCch
Q 035828 135 H---CADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYV 211 (781)
Q Consensus 135 ~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~ 211 (781)
. .++...|..+...+...|++++|...|++..+.+ +.+..++..+...+...|+++.|...++.+.+..... .
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~ 261 (899)
T TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNS---P 261 (899)
T ss_pred HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---c
Confidence 2 1233445555555555566666666665554432 2233445555555555566666666655555543221 1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 035828 212 SVTNSLISMYSQCGDIEAAERAFWGMTCK---DVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLC 288 (781)
Q Consensus 212 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~ 288 (781)
.........+...|++++|...|+.+.+. +...+..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~ 339 (899)
T TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQ 339 (899)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHH
Confidence 12222222334456666666666555422 12223344455667777777777777776632 33445566666777
Q ss_pred hcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC-CCC-eeeHHHHHHH------------
Q 035828 289 ADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP-MND-LVSWNSMISG------------ 354 (781)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~ll~~------------ 354 (781)
.+.|+++.|...+..+.+... .+...+..+...+.+.|++++|.+.|+++.. .|+ ...+..+...
T Consensus 340 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 418 (899)
T TIGR02917 340 LRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIA 418 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHH
Confidence 788888888888888776543 3566777888888888888888888887765 222 2222221111
Q ss_pred HHHHHHHhcccCC-chhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-
Q 035828 355 LFKEMLYLCSQFS-FSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN- 432 (781)
Q Consensus 355 l~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~- 432 (781)
.+..... ..|+ ......+...+...|+.+.+..++..+... .+.+..++..+...+...|++++|.+.|+++...
T Consensus 419 ~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 419 DLETAAQ--LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHh--hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 1111111 1121 223334455667788888888888877653 3456678888888899999999999998876432
Q ss_pred C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHH
Q 035828 433 S-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNA 511 (781)
Q Consensus 433 ~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 511 (781)
| +...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|+.++|...+..+...+ +.+...+..
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 572 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALA 572 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHH
Confidence 3 45567778888888999999999999988753 3456677778888888999999999998887664 335667778
Q ss_pred HHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchH
Q 035828 512 LITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLR 586 (781)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~ 586 (781)
+...|.+.|++++|..+++.+. ..+...|..+..++...|++++|+..|+++ ...| +...+..+..++...|+++
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 8889999999999999998876 345678889999999999999999999998 5555 4566777888888899999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcC------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNC------------------KSNAAWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
.|...++.+.+.... +...+..+...+... .+...+..+...+...|++++|++.|+++..
T Consensus 653 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 653 KAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999988775422 234455555554433 3556677788888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCcch
Q 035828 649 SGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-P-IQPKPGV 725 (781)
Q Consensus 649 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~ 725 (781)
. .|+..++..+..++.+.|++++|.+.++++++. .|+ ...+..++..|...|++++|.+.++++ . .++++..
T Consensus 732 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 806 (899)
T TIGR02917 732 R--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV 806 (899)
T ss_pred h--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence 4 455577777888888888999999888888765 444 578888888889999999999998887 3 3445667
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+..+.+.+...|+ .+|+..++++.++.|+++..+..++.+|...|++++|.+++
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888 78999999999999999999999999999999999998875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-25 Score=259.57 Aligned_cols=651 Identities=11% Similarity=0.012 Sum_probs=396.7
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhcc
Q 035828 42 NAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121 (781)
Q Consensus 42 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 121 (781)
-..++.+...++.+.|.+.+.++.... +-+...+..++..+.+.|+.++|.+.+++..+.. |+...+..+...+.
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~-- 106 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTML-- 106 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHH--
Confidence 335567778888888998888887653 3356777778888888889999999888888875 32222111000000
Q ss_pred CChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcc-hHHHHHHHhhccCChhHHHHHHHHH
Q 035828 122 GDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNV-SLSSAVAASACLGELSYGKVIHALG 200 (781)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~ 200 (781)
+..|+....-.+...+...|++++|+..|+.+.+.+ +|+.. ....+.......|+.+.|...++.+
T Consensus 107 ------------~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~l 173 (1157)
T PRK11447 107 ------------LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRL 173 (1157)
T ss_pred ------------hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHH
Confidence 000111111122223334444444444444443321 11111 0101111111234444444444444
Q ss_pred HHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC-----------------------CcccHHHHHHHHHhCCC
Q 035828 201 IKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCK-----------------------DVVSWNAIIDGFALNGK 257 (781)
Q Consensus 201 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------------------~~~~~~~li~~~~~~~~ 257 (781)
.+..+. + ...+..+...+...|+.++|+..++++... ....+...+..+-....
T Consensus 174 l~~~P~-~--~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~ 250 (1157)
T PRK11447 174 NADYPG-N--TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDS 250 (1157)
T ss_pred HHhCCC-C--HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchH
Confidence 444321 1 333444444444455555555554443211 11112222222222223
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 035828 258 FEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFN 337 (781)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 337 (781)
.+.|...+....... ..|+... ...-..+...|++++|...+++..+.... +...+..+..++.+.|++++|...|+
T Consensus 251 ~~~A~~~L~~~~~~~-~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 251 VAAARSQLAEQQKQL-ADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHHhc-cCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555554432 2333221 12234455778888888888888876433 56777788888888888888888888
Q ss_pred hhCC-CCCee---eHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHH
Q 035828 338 AIAP-MNDLV---SWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMY 413 (781)
Q Consensus 338 ~~~~-~~~~~---~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 413 (781)
+..+ .|+.. .|..++.. .........-..+
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~----------------------------------------------~~~~~~~~~g~~~ 361 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKV----------------------------------------------NRYWLLIQQGDAA 361 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHh----------------------------------------------hhHHHHHHHHHHH
Confidence 7654 11100 01110000 0000011223456
Q ss_pred HhcCCHHHHHHHHHhhcCC-C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCccchHHH
Q 035828 414 INCGDLVAAFSLLQRISHN-S-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPD-SVTLVNVISACGNLELAFEG 490 (781)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a 490 (781)
.+.|++++|...|++.... | +...+..+...+...|++++|++.|++..+. .|+ ...+..+...+. .++.++|
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---~p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---DPGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH-hcCHHHH
Confidence 6788888888888876432 3 4455667778888888888888888888774 344 334444444443 4566777
Q ss_pred HHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCChHHHHHHhhhcCC---CChhhHHHHHHHHHhCCChhHHHHH
Q 035828 491 KSLHGLALKSLM--------GLDTRVQNALITMYGRCRDIKSASTVFESCYN---CNLCTWNCMISAFSQNKAEVRALEL 559 (781)
Q Consensus 491 ~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 559 (781)
..+++.+....- ......+..+...+...|++++|.+.+++... .+...+..+...|.+.|++++|...
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777665432110 01122345566778889999999999987762 2445677788889999999999999
Q ss_pred Hhhc-CCCCCH-hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChH
Q 035828 560 FRHL-EFEPNE-ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGW 637 (781)
Q Consensus 560 ~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ 637 (781)
++++ ...|+. ..+..+...+...++.++|...++.+......++......-+. ...+..+...+...|+.+
T Consensus 518 l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~-------~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ-------SDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh-------hhHHHHHHHHHHHCCCHH
Confidence 9998 556643 3333344445678889999988887654333222211110000 012345567788999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHh
Q 035828 638 EAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKN 716 (781)
Q Consensus 638 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (781)
+|+++++. .+++...+..+...+...|+.++|++.|+++++. .|+ ...+..++..|...|++++|++.++.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999882 3445667788888999999999999999999865 666 68889999999999999999999998
Q ss_pred C-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCChhhHHhhcC
Q 035828 717 L-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG------YYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 717 ~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
+ ...|+ ...+..+..++...|++++|.+.++++.+..|+++. .+..++.++.++|++++|++.++
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7 34554 446677888888999999999999999998876553 56678999999999999998864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-23 Score=242.28 Aligned_cols=626 Identities=10% Similarity=0.011 Sum_probs=347.5
Q ss_pred hHHHHHhhcCCchhHHHHhhhhc---CCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhH------------
Q 035828 12 SLLTAYSNVSYFESSLALFYETC---NKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTL------------ 76 (781)
Q Consensus 12 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~------------ 76 (781)
..++.....++.+.|.+.++++. ..|+..+..++..+.+.|+.++|...++++.+.. |+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 34556677899999999999853 3367788889999999999999999999999875 333222
Q ss_pred -----HHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHH-HhhccCChhhHHHHhccCCC--C-CeeehHHHHH
Q 035828 77 -----LIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVN-MYAKCGDLNSSECTFSGMHC--A-DTVSWNTIMS 147 (781)
Q Consensus 77 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~ 147 (781)
..+...+...|++++|.+.++.+.+.. +|+...-..+.. .....|+.++|.+.|+++.. | +...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 233446778899999999999998764 333321111222 22345899999999998853 3 4556778888
Q ss_pred HHhhCCChhhHHHHHHHHhhcCCCCCcchHHHH--------------------HHHhhccCChhHHHHHHHHHHHhcCCC
Q 035828 148 GCLHNNYPEKCLLYFREMGWSGEQADNVSLSSA--------------------VAASACLGELSYGKVIHALGIKLGYED 207 (781)
Q Consensus 148 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l--------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~ 207 (781)
.+...|+.++|+..++++.+.... +...-... +..+-.......+...+....... .
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~--~ 266 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL--A 266 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc--c
Confidence 899999999999999998653210 00000000 111111111122222222221111 1
Q ss_pred CCchhHHHHHHHHHHhcCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHH-
Q 035828 208 SPYVSVTNSLISMYSQCGDIEAAERAFWGMT---CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVT- 283 (781)
Q Consensus 208 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~- 283 (781)
+|... ....-..+...|++++|+..|++.. +.+...+..+...+.+.|++++|...|++..+...-.+....+..
T Consensus 267 dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 11111 1122334445566666666665543 124455555666666666666666666665552211111111111
Q ss_pred -----------HHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHH
Q 035828 284 -----------LISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMI 352 (781)
Q Consensus 284 -----------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll 352 (781)
.-..+.+.|++++|...++++.+.... +...+..+...+...|++++|++.|++...
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~----------- 413 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALR----------- 413 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------
Confidence 112233455555555555555544321 333444445555555555555555554433
Q ss_pred HHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC
Q 035828 353 SGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN 432 (781)
Q Consensus 353 ~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 432 (781)
.. +.+...+..+...|. .++.++|...++.+...
T Consensus 414 --------------------------------------------~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~ 447 (1157)
T PRK11447 414 --------------------------------------------MD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSAS 447 (1157)
T ss_pred --------------------------------------------hC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHH
Confidence 11 111222333333332 33455555555544211
Q ss_pred -C----------CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh-hhHHHHHHHhcCccchHHHHHHHHHHHHh
Q 035828 433 -S----------DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS-VTLVNVISACGNLELAFEGKSLHGLALKS 500 (781)
Q Consensus 433 -~----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 500 (781)
+ ....+..+...+...|++++|++.|++..+. .|+. ..+..+...+.+.|++++|...++.+.+.
T Consensus 448 ~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 448 QRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0 0112334455566666777777777766663 2432 33344445555666666666666655543
Q ss_pred cCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhc
Q 035828 501 LMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACT 580 (781)
Q Consensus 501 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 580 (781)
.. .+...+..+...+...|+.++|...++.+..... +.-+.. +...+ ....+..+...+.
T Consensus 525 ~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~---~~~~~~------------l~~~l----~~~~~l~~a~~l~ 584 (1157)
T PRK11447 525 KP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQW---NSNIQE------------LAQRL----QSDQVLETANRLR 584 (1157)
T ss_pred CC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhc---ChhHHH------------HHHHH----hhhHHHHHHHHHH
Confidence 21 1222233333334455555666555555442110 000000 00000 0001123344556
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH
Q 035828 581 QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVI 659 (781)
Q Consensus 581 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~ 659 (781)
..|+.++|..+++. .|+ +...+..+...+.+.|++++|++.|++..+. .| +...+.
T Consensus 585 ~~G~~~eA~~~l~~------~p~---------------~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~ 641 (1157)
T PRK11447 585 DSGKEAEAEALLRQ------QPP---------------STRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARL 641 (1157)
T ss_pred HCCCHHHHHHHHHh------CCC---------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 66777777776651 121 1124555667778888888888888888873 44 456777
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-------cchHHHHH
Q 035828 660 SLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-------PGVWGAML 730 (781)
Q Consensus 660 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------~~~~~~l~ 730 (781)
.+...+...|+.++|.+.++.+.+ ..|+ ...+..+..++...|++++|.++++++ ...|+ ...+..+.
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a 718 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAA 718 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHH
Confidence 888888888888888888887753 3555 456667778888888888888888876 22221 13455566
Q ss_pred HHHHhcCCcHHHHHHHHHHhc
Q 035828 731 SACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~ 751 (781)
..+...|++++|+..|+++..
T Consensus 719 ~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 719 RFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 777788888888888888874
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-23 Score=229.10 Aligned_cols=647 Identities=10% Similarity=-0.017 Sum_probs=413.0
Q ss_pred cCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHH
Q 035828 51 NRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECT 130 (781)
Q Consensus 51 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 130 (781)
.|++++|+..|+...+.. |-+..++..+...+...|+.++|...+++..+.. |+...|..++..+ ++.++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHH
Confidence 377777777777777654 2235666777777777777777777777776653 3333333333222 677777777
Q ss_pred hccCC--CC-CeeehHHHHHH--------HhhCCChhhHHHHHHHHhhcCCCCCcchHHHH-HHHhhccCChhHHHHHHH
Q 035828 131 FSGMH--CA-DTVSWNTIMSG--------CLHNNYPEKCLLYFREMGWSGEQADNVSLSSA-VAASACLGELSYGKVIHA 198 (781)
Q Consensus 131 ~~~~~--~~-~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~ 198 (781)
++++. .| +...+..+... |.+. ++|.+.++ .......|++.+.... .+.+...++++.+..++.
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 77763 23 23333333333 3333 44444444 3333333444444444 677777777777777777
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHh-cCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC
Q 035828 199 LGIKLGYEDSPYVSVTNSLISMYSQ-CGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPD 277 (781)
Q Consensus 199 ~~~~~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd 277 (781)
.+.+.+... ......|-.+|.. .++ +.+..+++...+.+...+..+...+.+.|+.++|.++++++.....-.|+
T Consensus 207 ~L~k~~pl~---~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 207 EARQQNTLS---AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHhcCCCC---HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 777776432 3345555556666 366 88888877544567888889999999999999999999998774423466
Q ss_pred HHHHHHHHHHHhcccchh-hhhhHHHHHHHhcCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHH
Q 035828 278 IATVVTLISLCADSLLLR-EGRSVHGYAIRRLLGYD-LLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGL 355 (781)
Q Consensus 278 ~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l 355 (781)
..++..++. +.+... .+..-+.. ...++ ....-.++..+.+.++++.+.++.. ...
T Consensus 283 ~~~~~~~l~---r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------- 340 (987)
T PRK09782 283 EKSWLYLLS---KYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLP-------------- 340 (987)
T ss_pred cHHHHHHHH---hccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCC--------------
Confidence 655554443 333322 11111111 01111 1122334778888899987776643 211
Q ss_pred HHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-CCC
Q 035828 356 FKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISH-NSD 434 (781)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~ 434 (781)
.......-..+....+...++...+..|.+. ..-+....-.+-....+.|+.++|..+++..-+ +++
T Consensus 341 -----------~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~ 408 (987)
T PRK09782 341 -----------ANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD 408 (987)
T ss_pred -----------cchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc
Confidence 1111100011111223334444444444332 122333444444456678888888888887654 222
Q ss_pred ----cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHh-cC-CC--Ch
Q 035828 435 ----TSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKS-LM-GL--DT 506 (781)
Q Consensus 435 ----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~--~~ 506 (781)
....+-++..|.+.+......+...-. .+++..+- |.-.|+...+.......... +. ++ +.
T Consensus 409 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~ 477 (987)
T PRK09782 409 ARLSQTLMARLASLLESHPYLATPAKVAILS-----KPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDA 477 (987)
T ss_pred cccCHHHHHHHHHHHHhCCcccchHHHHHhc-----cccccchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCH
Confidence 223446667777776633332222111 11122111 11123333333333333221 12 23 56
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHH--HHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccC
Q 035828 507 RVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCM--ISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLG 583 (781)
Q Consensus 507 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~ 583 (781)
..+..+..++.. ++.++|...+.......+..++.+ ...+...|++++|...|+++ ...|+...+..+..++...|
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~G 556 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCC
Confidence 677777777776 888899997776553223344444 34446899999999999998 45566666667777888899
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035828 584 VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLS 663 (781)
Q Consensus 584 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 663 (781)
+.+.|...++...+.. |+... .+..+...+...|++++|+..+++..+ ..|+...+..+..
T Consensus 557 d~~eA~~~l~qAL~l~--P~~~~---------------l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~ 617 (987)
T PRK09782 557 NGAARDRWLQQAEQRG--LGDNA---------------LYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARAT 617 (987)
T ss_pred CHHHHHHHHHHHHhcC--CccHH---------------HHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 9999999999988765 32210 222233344566999999999999998 6788889999999
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTK 740 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 740 (781)
++.+.|+.++|...+++.++. .|+ ...+..+..++...|++++|++.+++. ...| +...+..+..++...|+++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999854 777 578889999999999999999999987 5556 4567899999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 741 MGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+|+..+++++++.|++..+....+++..++.+++.|.+-
T Consensus 695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998774
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-21 Score=211.83 Aligned_cols=493 Identities=11% Similarity=0.028 Sum_probs=304.0
Q ss_pred HHhcCChhHHHHHhccCCCC--CcccHHHH-HHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-ccchhh
Q 035828 221 YSQCGDIEAAERAFWGMTCK--DVVSWNAI-IDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCAD-SLLLRE 296 (781)
Q Consensus 221 ~~~~g~~~~a~~~~~~~~~~--~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~-~~~~~~ 296 (781)
|.+.+....+++ .+...| +..+.... .+.|.+.|++++|++++.++.+.+ ..+..-...+-..+.. .++ +.
T Consensus 160 y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 160 LAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HH
Confidence 666666666666 233333 34434444 888999999999999999999964 2233334555555655 355 66
Q ss_pred hhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC----CCCeeeHHHHHHHHHHHHHHhcccCCchhhh
Q 035828 297 GRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP----MNDLVSWNSMISGLFKEMLYLCSQFSFSTLL 372 (781)
Q Consensus 297 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 372 (781)
+..+++. .++-+......+...|.+.|+.++|..+++++.. .++..+|--.+.
T Consensus 235 a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~------------------- 291 (987)
T PRK09782 235 LLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS------------------- 291 (987)
T ss_pred HHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH-------------------
Confidence 6666432 3446788889999999999999999999998876 122222222211
Q ss_pred hhhcccCCCcchhhhHHHHHHHHHhcCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCCh
Q 035828 373 AILPSCNSPESLEFGKSIHCWQLKLGFSNNT-IGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHF 451 (781)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 451 (781)
........ +..-+.. ...++. ...-.++..+.+.++++.+.++.. . .|.....-.-..+....+..
T Consensus 292 ----r~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 292 ----KYSANPVQ--ALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-T--LPANEMLEERYAVSVATRNK 358 (987)
T ss_pred ----hccCchhh--hccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-C--CCcchHHHHHHhhccccCch
Confidence 11111000 0000000 000000 011112444555555555544422 1 11111110001111122444
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcCC---hHHH-
Q 035828 452 QEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKS--LMGLDTRVQNALITMYGRCRD---IKSA- 525 (781)
Q Consensus 452 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~---~~~A- 525 (781)
.++...++.|.+.. +-+.....-+--...+.|+.++|.+++...... .-.++.....-|+..|.+.+. ..++
T Consensus 359 ~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 359 AEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 44444444444431 112222222222233445555555555554431 112233333444455544443 1112
Q ss_pred ------------------------HHHhhhcC---CC--ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHH
Q 035828 526 ------------------------STVFESCY---NC--NLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSI 575 (781)
Q Consensus 526 ------------------------~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~l 575 (781)
...+.... .. +...|..+..++.. ++.++|+..+.+. ...|+......+
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~l 515 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAV 515 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHH
Confidence 11122221 12 45577777777766 8999999988887 677886654455
Q ss_pred HHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 035828 576 LSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK 655 (781)
Q Consensus 576 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 655 (781)
..++...|++++|...++.+... .|+.. .+..+...+...|+.++|...+++..+. .|+.
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~----------------a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~ 575 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--DMSNE----------------DLLAAANTAQAAGNGAARDRWLQQAEQR--GLGD 575 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCcH----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcc
Confidence 55667899999999999987543 22222 3555667788899999999999999885 3544
Q ss_pred H-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHH
Q 035828 656 S-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSA 732 (781)
Q Consensus 656 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 732 (781)
. .+..+...+...|++++|...+++.++. .|+...|..+..++.+.|++++|+..+++. ...|+ ...+..+..+
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3 3334444555679999999999999854 788888999999999999999999999987 55665 4567888888
Q ss_pred HHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 733 CSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+...|++++|+..+++++++.|+++.++.+++.+|...|++++|++.+
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999998765
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-20 Score=177.44 Aligned_cols=242 Identities=17% Similarity=0.238 Sum_probs=174.4
Q ss_pred HHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCH-hHHHHHHHHhcccCchH
Q 035828 512 LITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNE-ISIVSILSACTQLGVLR 586 (781)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~ 586 (781)
|-..|...+.++.|...+.+.. ....+.+..+...|-.+|..+-|+..|++. ++.|+. ..|+.|..++-..|++.
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH
Confidence 3333444444444444444322 112234444444555555555666655555 555542 35666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHh
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-SSVISLLSAC 665 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~ 665 (781)
+|...+......... ...+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|
T Consensus 338 ea~~cYnkaL~l~p~-----------------hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 338 EAVDCYNKALRLCPN-----------------HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIY 398 (966)
T ss_pred HHHHHHHHHHHhCCc-----------------cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHH
Confidence 666666555543221 122567788889999999999999999887 77765 4788899999
Q ss_pred cccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHH
Q 035828 666 SHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMG 742 (781)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 742 (781)
-..|++++|+..+++.+ .++|+ ...|+.+...|-..|+.+.|++.+.++ .+.|. ....+.|...+...|+..+|
T Consensus 399 kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred HhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHH
Confidence 99999999999999987 67998 589999999999999999999988876 66675 44678888888899999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 743 KQVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 743 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
++-|++++++.|+.|.++.+|...+.--.+|.+
T Consensus 476 I~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 476 IQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999999999999999887665555544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=169.93 Aligned_cols=353 Identities=16% Similarity=0.182 Sum_probs=300.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 035828 402 NTIGVNALMHMYINCGDLVAAFSLLQRISHN-S-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVIS 479 (781)
Q Consensus 402 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 479 (781)
-..+|+.+.+.+-..|++++|+.+++.+... | .+..|..+..++...|+.+.|...|.+..+ +.|+.....+-+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchh
Confidence 4578888999999999999999999987443 4 567899999999999999999999999988 6688776655444
Q ss_pred Hh-cCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCCh---hhHHHHHHHHHhCCChhH
Q 035828 480 AC-GNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNL---CTWNCMISAFSQNKAEVR 555 (781)
Q Consensus 480 ~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 555 (781)
.+ ...|+.++|...+.+.+..... -...|+.|.-.+-..|+...|+.-|++...-|+ ..|-.|...|...+.+++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 43 4478889999888877765321 245577788888899999999999998874443 588888999999999999
Q ss_pred HHHHHhhc-CCCCCH-hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhc
Q 035828 556 ALELFRHL-EFEPNE-ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYH 633 (781)
Q Consensus 556 A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~ 633 (781)
|+..|.+. ...|+. +.+..+...|...|.++.|..-+++.++... +.. .+|+.|..++-..
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P--~F~---------------~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP--NFP---------------DAYNNLANALKDK 333 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC--Cch---------------HHHhHHHHHHHhc
Confidence 99999998 788864 5666666678889999999999998887543 322 2799999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHH
Q 035828 634 GKGWEAIELFHEMCNSGIRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAY 711 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 711 (781)
|+..+|.+.|.+... +.|+. .+.+.|...+...|.+++|..+|...+ .+.|. ....+.|...|-++|++++|+
T Consensus 334 G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred cchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHH
Confidence 999999999999988 66654 488999999999999999999999886 56888 588999999999999999999
Q ss_pred HHHHhC-CCCCCc-chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 712 EFIKNL-PIQPKP-GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 712 ~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.-++++ .++|+. ..++.+...+...|+.+.|.+.+++++..+|--..++.+|+.+|...|+..+|++-+
T Consensus 409 ~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 409 MCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 999887 788874 489999999999999999999999999999999999999999999999999998754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-16 Score=164.74 Aligned_cols=660 Identities=12% Similarity=0.059 Sum_probs=378.0
Q ss_pred cchhhHHHHHHHhcCCchhhHHHHHHHHhcC----CCCChh---hHHHHHHHHhccC-----------cccchhHHHHHH
Q 035828 38 VVTWNAMITACVENRCVVMGLHFFGEMVEEG----IRFDST---TLLIIVSALTQMN-----------CLKQGRVVHCLS 99 (781)
Q Consensus 38 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~---~~~~ll~~~~~~~-----------~~~~a~~~~~~~ 99 (781)
..+|..+...|.+.|..++.+.+++.-.... -.++.. .++.+...+...+ -...|..+|...
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 4568888888899999888888887755111 011111 2222222222221 122233333333
Q ss_pred HHhcCCCCc-chhhhHHHHhhccCChhhHHHHhccCCCCCee-ehHHHHHHH--hhCCChhhHHHHHHHHhhc--CCCCC
Q 035828 100 IKAGMIADS-SLCNVFVNMYAKCGDLNSSECTFSGMHCADTV-SWNTIMSGC--LHNNYPEKCLLYFREMGWS--GEQAD 173 (781)
Q Consensus 100 ~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~--~~~g~~~~a~~~~~~m~~~--g~~p~ 173 (781)
-+.....++ .++...........+++.|...|..+.+.+.. ....|..++ ...+++-.|+.+|+..... ..+||
T Consensus 121 ~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD 200 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD 200 (1018)
T ss_pred HHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC
Confidence 332222222 22222222222222357888888777533222 223344443 3467899999999985443 44555
Q ss_pred cchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhc---CChhHHHHHhccCC---CCCcccHHH
Q 035828 174 NVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQC---GDIEAAERAFWGMT---CKDVVSWNA 247 (781)
Q Consensus 174 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~---~~~~~~~~~ 247 (781)
+.. .+-.++...++.+.|...|....+..+. + +.++-.|-..-... ..+..+..++...- ..++...+.
T Consensus 201 ~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~-~--v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~ 275 (1018)
T KOG2002|consen 201 VRI--GIGHCFWKLGMSEKALLAFERALQLDPT-C--VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNH 275 (1018)
T ss_pred ccc--hhhhHHHhccchhhHHHHHHHHHhcChh-h--HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHH
Confidence 432 2224456778888888888887776531 1 33333332222222 33445555554442 457888999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 035828 248 IIDGFALNGKFEEAFDLLHEMQLMRSVE-PDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKS 326 (781)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~m~~~~~~~-pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 326 (781)
|...|.-.|++..++++...+....... .-...|-.+-+++-..|++++|...|-+..+....-....+--|...|.+.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 9999999999999999998887643111 123457778888889999999999988777654333234445678889999
Q ss_pred CCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCc-hhhhhhhcccCCCc----chhhhHHHHHHHHHhcCCC
Q 035828 327 NSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSF-STLLAILPSCNSPE----SLEFGKSIHCWQLKLGFSN 401 (781)
Q Consensus 327 ~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~-~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~ 401 (781)
|+++.+...|+.+.. ..|+. .++..+=..+...+ ..+.|..++....+.- ..
T Consensus 356 ~dle~s~~~fEkv~k----------------------~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~ 412 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLK----------------------QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PV 412 (1018)
T ss_pred chHHHHHHHHHHHHH----------------------hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cc
Confidence 999999999988755 22222 22222222222222 2233333332222211 22
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHH-------HhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCCh
Q 035828 402 NTIGVNALMHMYINCGDLVAAFSLL-------QRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQ---QNASPDS 471 (781)
Q Consensus 402 ~~~~~~~li~~~~~~~~~~~a~~~~-------~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~~p~~ 471 (781)
|...|-.+-..+-.. +...++..| ..-...+.+...|.+...+...|++.+|...|+..... . ..+|.
T Consensus 413 d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~-~n~de 490 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV-ANKDE 490 (1018)
T ss_pred cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh-cCccc
Confidence 333443333333332 222223333 32223356666777777777777777777777776554 1 22232
Q ss_pred h------hHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHH
Q 035828 472 V------TLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNC 542 (781)
Q Consensus 472 ~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 542 (781)
. +--.+.......++.+.|.+.+..+.+.... -+..|--+..+....+...+|...+.... ..++..|+.
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 1 1122333334455666666666666554211 11111111111112244455555555443 233445555
Q ss_pred HHHHHHhCCChhHHHHHHhhc----CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCC
Q 035828 543 MISAFSQNKAEVRALELFRHL----EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCK 618 (781)
Q Consensus 543 l~~~~~~~~~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 618 (781)
+...+.....+..|..-|..+ ...+|..+..+|-..|.. .+....-
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~------------~l~~~~r------------------ 619 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ------------ALHNPSR------------------ 619 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH------------Hhccccc------------------
Confidence 555555555555555544444 122343333333222111 0000000
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIV 698 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 698 (781)
+.-...+..++|+++|.+.+.. -+-|.+.-+.+...++..|++++|..+|.++.+.. .-...+|.+++
T Consensus 620 ---------n~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNla 687 (1018)
T KOG2002|consen 620 ---------NPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLA 687 (1018)
T ss_pred ---------ChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHH
Confidence 0013456788999999998874 23366777777778888999999999999998762 22356788999
Q ss_pred HHhhhcCChHHHHHHHHhC----CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 699 DMLGRSGKLQEAYEFIKNL----PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
.+|..+|+|..|+++++.. ....++.+...|.+++...|.+.+|++++..+..+.|.++...++++-...+.
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 9999999999999999876 23456778899999999999999999999999999999999999888876554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-17 Score=166.18 Aligned_cols=634 Identities=10% Similarity=-0.025 Sum_probs=315.6
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCC
Q 035828 58 LHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCA 137 (781)
Q Consensus 58 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 137 (781)
..++-.+...|+.|+..||..+|..||..|+.+.|- +|.-|.-...+.+..+++.++.+..+.++.+.+. .|
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 356667777788888888888888888888887777 7777777777777777788887777777776555 56
Q ss_pred CeeehHHHHHHHhhCCChhhHHHHHHH-HhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHH
Q 035828 138 DTVSWNTIMSGCLHNNYPEKCLLYFRE-MGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNS 216 (781)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 216 (781)
...+|..|..+|...||+.. ++.-++ |. .++..+...|.-.....++... ...+.. ...-..
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~--~c~p~~--lpda~n 144 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPERWFLMKI--HCCPHS--LPDAEN 144 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhc--ccCccc--chhHHH
Confidence 77778888888888877665 222222 21 1111122222211111111110 000000 011111
Q ss_pred HHHHHHhcCChhHHHHHhccCC----------------------------------CCCcccHHHHHHHHHhCCChhHHH
Q 035828 217 LISMYSQCGDIEAAERAFWGMT----------------------------------CKDVVSWNAIIDGFALNGKFEEAF 262 (781)
Q Consensus 217 ll~~~~~~g~~~~a~~~~~~~~----------------------------------~~~~~~~~~li~~~~~~~~~~~a~ 262 (781)
++......|-++.+++++..+| .++..+|.+++.+-..+|+.+.|.
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 2222223333344444443333 245555555555555555555555
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCC
Q 035828 263 DLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPM 342 (781)
Q Consensus 263 ~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 342 (781)
.++.+|++.| +..+..-|..++-+ .++...++.++..|.+.|+.|+..|+...+-.+..+|....+..
T Consensus 225 ~ll~emke~g-fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e-------- 292 (1088)
T KOG4318|consen 225 NLLYEMKEKG-FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE-------- 292 (1088)
T ss_pred HHHHHHHHcC-CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------
Confidence 5555555555 55555544444433 44555555555555555555555555544444443332111111
Q ss_pred CCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCC----cchh--hh---HHHHHHHHHhcCCCchhHHHHHHHHH
Q 035828 343 NDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSP----ESLE--FG---KSIHCWQLKLGFSNNTIGVNALMHMY 413 (781)
Q Consensus 343 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~--~a---~~~~~~~~~~g~~~~~~~~~~li~~~ 413 (781)
|.+.+...-..+..+.++. .+++ .. ...+....=.|+.....+|...+. .
T Consensus 293 --------------------~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l 351 (1088)
T KOG4318|consen 293 --------------------GSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-L 351 (1088)
T ss_pred --------------------ccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-H
Confidence 1111111001111111110 0000 00 000111111244443433333322 2
Q ss_pred HhcCCHHHHHHHHHhhcCCC-------CcccHHHHHHHHHhCCChHHHHHHHH--HHHHcCCCCCChhhHHHHHHHhcCc
Q 035828 414 INCGDLVAAFSLLQRISHNS-------DTSCWNIVIVACTQNGHFQEAIKTFK--SMTQQQNASPDSVTLVNVISACGNL 484 (781)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~--~m~~~~~~~p~~~~~~~ll~~~~~~ 484 (781)
..+|+-++...+...+ ..| ++..|..++.-|.+.-+..-...++. +..+. ..+....-.+.....+.
T Consensus 352 ~hQgk~e~veqlvg~l-~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~---~l~se~tp~vsell~~l 427 (1088)
T KOG4318|consen 352 RHQGKGEEVEQLVGQL-LNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL---NLNSEDTPRVSELLENL 427 (1088)
T ss_pred HHcCCCchHHHHHhhh-cCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---hhchhhhHHHHHHHHHh
Confidence 3356666666666655 222 23345444444443222111111111 11110 00000000011110000
Q ss_pred cchHHHHHHHHHHHH----hcC-------CCChHHHHHHHHHHHhcCChHHHHHHhhhcCCC-ChhhHHHHHHHHHhCCC
Q 035828 485 ELAFEGKSLHGLALK----SLM-------GLDTRVQNALITMYGRCRDIKSASTVFESCYNC-NLCTWNCMISAFSQNKA 552 (781)
Q Consensus 485 ~~~~~a~~~~~~~~~----~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 552 (781)
+...+.+-+..+.. +.+ .+-...-+.++..+++.-+..+++..-+..... =.-.|..||+-++.+++
T Consensus 428 -rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdk 506 (1088)
T KOG4318|consen 428 -RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDK 506 (1088)
T ss_pred -CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHH
Confidence 11111111111100 000 112233345555555555555555333322210 01367888888888888
Q ss_pred hhHHHHHHhhc----C-CCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCC-CCCchHHHHHHHhhhcCCChhhHHHH
Q 035828 553 EVRALELFRHL----E-FEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGF-QENSFISSALLDMYSNCKSNAAWSSM 626 (781)
Q Consensus 553 ~~~A~~~~~~~----~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l 626 (781)
.+.|+.+..+. . ..-|..-+..+.+...+.+....+..++.++.+.-. .|+..+ ++--+
T Consensus 507 le~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~---------------~~f~~ 571 (1088)
T KOG4318|consen 507 LEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAI---------------ILFPL 571 (1088)
T ss_pred HHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHH---------------HHHHH
Confidence 88888888887 1 455666777788888888888888888888776222 222111 33445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHH-------
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIV------- 698 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~------- 698 (781)
.++.+..|+.+...++.+-+...|+.-+ ..++....+.++...|.+..+...+.+.+.|. ...+-.++
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~ 647 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDS 647 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhcccc
Confidence 5566777887777777777777665442 34455666777777777777776665544443 12222222
Q ss_pred -----------HHhhhcCChHHHHHHHHhCC---------------CCC---------CcchHHHHHHHHHhcCCcHHHH
Q 035828 699 -----------DMLGRSGKLQEAYEFIKNLP---------------IQP---------KPGVWGAMLSACSHHGDTKMGK 743 (781)
Q Consensus 699 -----------~~~~~~g~~~~A~~~~~~~~---------------~~p---------~~~~~~~l~~~~~~~g~~~~A~ 743 (781)
..|.+.|++.+|.++.+.-+ +.| +......++..+.+.|+.+.|.
T Consensus 648 ~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~ 727 (1088)
T KOG4318|consen 648 PQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERAS 727 (1088)
T ss_pred HHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHH
Confidence 23677888888887766542 111 1122345666778888888888
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 744 QVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 744 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
.+|.++. -.+++....+|+.++.+.....+
T Consensus 728 glwnK~Q--V~k~~~~l~~LAsIlr~~n~evd 757 (1088)
T KOG4318|consen 728 GLWNKDQ--VSKSPMKLFHLASILRRMNEEVD 757 (1088)
T ss_pred hHHhhCc--CCcchHHHHHHHHHHHhhchhcc
Confidence 8888875 33456677788888877665443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-17 Score=176.41 Aligned_cols=91 Identities=13% Similarity=-0.043 Sum_probs=73.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHH
Q 035828 245 WNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYS 324 (781)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 324 (781)
+......+.+.|++++|+..|++... +.|+...|..+..++.+.|+++.|...++...+.... +...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 45566778888999999999998877 6788888888888888899999999998888876432 5667778888899
Q ss_pred hcCCHHHHHHHHHhh
Q 035828 325 KSNSLSKAELLFNAI 339 (781)
Q Consensus 325 ~~~~~~~a~~~~~~~ 339 (781)
..|++++|..-|...
T Consensus 206 ~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 206 GLGKYADALLDLTAS 220 (615)
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999998877654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-15 Score=141.92 Aligned_cols=343 Identities=12% Similarity=0.077 Sum_probs=237.0
Q ss_pred eeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHH---HHhcCCCCCchhHHH
Q 035828 139 TVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALG---IKLGYEDSPYVSVTN 215 (781)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~p~~~~~~ 215 (781)
+.+=|.|++. ...|....+.-+|+.|+..|++.+...-..+++..+-.+.-+....-+++. .+.|-.. ..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S---~~sW- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS---TSSW- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc---cccc-
Confidence 3455666553 557889999999999999999998887777776654333322222222222 2222221 1222
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchh
Q 035828 216 SLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLR 295 (781)
Q Consensus 216 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~ 295 (781)
+.|++.+ ++-+...++..+|..+|.++|+--..+.|.+++++-.... .+.+..+||.+|.+-+- .
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~----~ 255 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSY----S 255 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHh----h
Confidence 3455443 4455555678899999999999999999999999999877 89999999999987542 2
Q ss_pred hhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhh
Q 035828 296 EGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAIL 375 (781)
Q Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll 375 (781)
...+++.+|.....+||..|+|+++++..+.|+++.|...+-++. .+|..-|+.|.-.+|..++
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil----------------~EmKeiGVePsLsSyh~ii 319 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQIL----------------GEMKEIGVEPSLSSYHLII 319 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHH----------------HHHHHhCCCcchhhHHHHH
Confidence 338899999999999999999999999999999998887665542 3666688888888888888
Q ss_pred cccCCCcchhh-hHHHHHHHHH----hcCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-------CC---cc
Q 035828 376 PSCNSPESLEF-GKSIHCWQLK----LGFSN----NTIGVNALMHMYINCGDLVAAFSLLQRISHN-------SD---TS 436 (781)
Q Consensus 376 ~~~~~~~~~~~-a~~~~~~~~~----~g~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~---~~ 436 (781)
..+++.++..+ +..+..++.. ..++| +..-|...|..|.+..+.+-|.++..-+... |+ ..
T Consensus 320 k~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~f 399 (625)
T KOG4422|consen 320 KNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNF 399 (625)
T ss_pred HHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHH
Confidence 88777777644 3333333332 22333 3344556666677777777777776555332 11 12
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 035828 437 CWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMY 516 (781)
Q Consensus 437 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 516 (781)
-|..+....|+....+.-...|+.|.-.- +-|+..+..-++++....+.++-..++|.+++..|.........-++..+
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~-y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSA-YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccce-ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 35556667777777777788888887766 77777777778887777778888888887777776554444443333333
Q ss_pred Hh
Q 035828 517 GR 518 (781)
Q Consensus 517 ~~ 518 (781)
++
T Consensus 479 ~~ 480 (625)
T KOG4422|consen 479 AR 480 (625)
T ss_pred hc
Confidence 33
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.5e-17 Score=174.25 Aligned_cols=326 Identities=12% Similarity=0.063 Sum_probs=211.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCC-C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh-hhHHHHHHHhc
Q 035828 406 VNALMHMYINCGDLVAAFSLLQRISHN-S-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS-VTLVNVISACG 482 (781)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~ 482 (781)
...++..+.+.|++++|..+++..... | +...+..+..+....|++++|+..|+++... .|+. ..+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV---NVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHH
Confidence 344556667778888888777766332 3 3444555556666778888888888887774 3443 34555556677
Q ss_pred CccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC--CC-ChhhHHHHHHHHHhCCChhHHHHH
Q 035828 483 NLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY--NC-NLCTWNCMISAFSQNKAEVRALEL 559 (781)
Q Consensus 483 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~ 559 (781)
..|+++.|...++.+.... +.+...+..+...+...|+.++|...++.+. .| +...+..+ ..+...|++++|+..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 7778888888777776652 2245566677777777888888877776553 22 22233222 336677788888877
Q ss_pred Hhhc-CCC--CCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCCh
Q 035828 560 FRHL-EFE--PNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKG 636 (781)
Q Consensus 560 ~~~~-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 636 (781)
++++ ... ++...+..+..++...|++++|...++...+... + +...+..+...+...|++
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p--~---------------~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL--D---------------GAALRRSLGLAYYQSGRS 262 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--C---------------CHHHHHHHHHHHHHcCCc
Confidence 7776 322 2333344445566777778888777777766432 2 122566677777777777
Q ss_pred HH----HHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHH
Q 035828 637 WE----AIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 637 ~~----A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 710 (781)
++ |+..|++..+ ..|+ ...+..+...+...|++++|...+++.++. .|+ ...+..+..+|.+.|++++|
T Consensus 263 ~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 263 REAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred hhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 75 6777777776 4453 446777777777778888888887777643 555 35666677777778888888
Q ss_pred HHHHHhC-CCCCCcchH-HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 711 YEFIKNL-PIQPKPGVW-GAMLSACSHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 711 ~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
++.++++ ...|+...+ ..+..++...|++++|...++++.+..|++..
T Consensus 338 ~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 338 SDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 7777766 345554333 33455566778888888888888777777543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-17 Score=170.84 Aligned_cols=294 Identities=14% Similarity=0.095 Sum_probs=195.4
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCC---hHHHHHHHHHHHhc
Q 035828 251 GFALNGKFEEAFDLLHEMQLMRSVEPD-IATVVTLISLCADSLLLREGRSVHGYAIRRLLGYD---LLMMNSLMDFYSKS 326 (781)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 326 (781)
.+...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..+++.+.+.+..++ ...+..+...|.+.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV---DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556666666666666653 233 33555555566666666666666666655432211 23456666677777
Q ss_pred CCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHH
Q 035828 327 NSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGV 406 (781)
Q Consensus 327 ~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 406 (781)
|++++|..+|+++.+ .-..+..++
T Consensus 121 g~~~~A~~~~~~~l~--------------------------------------------------------~~~~~~~~~ 144 (389)
T PRK11788 121 GLLDRAEELFLQLVD--------------------------------------------------------EGDFAEGAL 144 (389)
T ss_pred CCHHHHHHHHHHHHc--------------------------------------------------------CCcchHHHH
Confidence 777777777776644 012234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCC-CCc------ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 035828 407 NALMHMYINCGDLVAAFSLLQRISHN-SDT------SCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVIS 479 (781)
Q Consensus 407 ~~li~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 479 (781)
..++..+.+.|++++|.+.++.+... |+. ..+..+...+.+.|++++|...|+++.+.. +.+...+..+..
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~ 222 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGD 222 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHH
Confidence 66666666666666666666665332 211 124455566677777888888887777642 122345555666
Q ss_pred HhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC--CCChhhHHHHHHHHHhCCChhHHH
Q 035828 480 ACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY--NCNLCTWNCMISAFSQNKAEVRAL 557 (781)
Q Consensus 480 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 557 (781)
.+.+.|++++|..+++++...+.......++.++.+|.+.|++++|...++++. .|+...+..++..+.+.|++++|.
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHH
Confidence 777778888888887777765433334566778888888888888888888765 345555677888888999999999
Q ss_pred HHHhhc-CCCCCHhHHHHHHHHhcc---cCchHHHHHHHHHHHHhCCCCCch
Q 035828 558 ELFRHL-EFEPNEISIVSILSACTQ---LGVLRHGKQIHGHVFHLGFQENSF 605 (781)
Q Consensus 558 ~~~~~~-~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 605 (781)
.+++++ ...|+..++..++..+.. .|+.+++..+++.+.+.++.|++.
T Consensus 303 ~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 303 ALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 999888 778999888888877654 558889999999999888877776
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-17 Score=169.57 Aligned_cols=287 Identities=13% Similarity=0.080 Sum_probs=210.4
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcC
Q 035828 444 ACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLD---TRVQNALITMYGRCR 520 (781)
Q Consensus 444 ~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 520 (781)
.+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|..+++.+...+..++ ...+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3455667777777777776642 12334556666666777777777777776665432221 245677778888888
Q ss_pred ChHHHHHHhhhcCC---CChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCH------hHHHHHHHHhcccCchHHHHH
Q 035828 521 DIKSASTVFESCYN---CNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNE------ISIVSILSACTQLGVLRHGKQ 590 (781)
Q Consensus 521 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~------~~~~~ll~~~~~~~~~~~a~~ 590 (781)
++++|..+|+++.. .+..+++.++..+...|++++|++.++++ ...|+. ..+..+...+...|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 88888888887764 34567888888888888888888888888 333321 134455666778899999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCc
Q 035828 591 IHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGL 670 (781)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 670 (781)
.++++.+.. |+. ..++..+...+...|++++|+++++++.+.+......++..++.++...|+
T Consensus 202 ~~~~al~~~--p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 202 LLKKALAAD--PQC---------------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhHC--cCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 998887754 221 125677788889999999999999999874322224567888899999999
Q ss_pred HHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHh---cCCcHHHHHHH
Q 035828 671 VDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSH---HGDTKMGKQVA 746 (781)
Q Consensus 671 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 746 (781)
+++|.+.++++.+. .|+...+..++..+.+.|++++|.++++++ ...|+...+..++..+.. .|+.+++..++
T Consensus 265 ~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 265 EAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred HHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 99999999998754 677777788999999999999999999876 567888888888777664 56888999988
Q ss_pred HHHhcc
Q 035828 747 ELLFKL 752 (781)
Q Consensus 747 ~~~~~~ 752 (781)
+++.+.
T Consensus 342 ~~~~~~ 347 (389)
T PRK11788 342 RDLVGE 347 (389)
T ss_pred HHHHHH
Confidence 888864
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-14 Score=150.13 Aligned_cols=548 Identities=14% Similarity=0.069 Sum_probs=328.7
Q ss_pred chhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhc--CCCCcchhhhHHHHhhccCChhhHHHHh
Q 035828 54 VVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAG--MIADSSLCNVFVNMYAKCGDLNSSECTF 131 (781)
Q Consensus 54 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 131 (781)
.+.|...|....+.. +++.-.+-.=.......+++..|..+|....... ..||+.+ .+-.++.+.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 478888888888764 3444333333333346789999999999976654 3455433 3346677999999999999
Q ss_pred ccCCCCCeeehHHHHHHH---hhC---CChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035828 132 SGMHCADTVSWNTIMSGC---LHN---NYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGY 205 (781)
Q Consensus 132 ~~~~~~~~~~~~~li~~~---~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 205 (781)
....+-|+..-++++... ... ..+..++.++...-..+ .-++...+.|-..+-..|++..+..+...++....
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 988776665555555432 122 23445555555443322 23455666777777788888888888777776653
Q ss_pred CCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--CC--cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH-H
Q 035828 206 EDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTC--KD--VVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIA-T 280 (781)
Q Consensus 206 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~-t 280 (781)
....-...|--+-.+|...|+++.|...|.+..+ +| +..+--+...+.+.|+.+.+...|+...+ ..||.. |
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---~~p~~~et 378 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK---QLPNNYET 378 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH---hCcchHHH
Confidence 2221144566677888888888888888866552 22 33455567778888888888888888877 455554 4
Q ss_pred HHHHHHHHhccc----chhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHH
Q 035828 281 VVTLISLCADSL----LLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLF 356 (781)
Q Consensus 281 ~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~ 356 (781)
..++-..+...+ ..+.|..++....+.- +.|...|-.+-..+. .++...++.+|....
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~---------------- 440 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNAL---------------- 440 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHH----------------
Confidence 444333344332 3344444444444433 224445544444443 334444455554432
Q ss_pred HHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC----
Q 035828 357 KEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN---- 432 (781)
Q Consensus 357 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 432 (781)
+.+...+..+.+...|.+-..+...|++..|...|+.....
T Consensus 441 -----------------------------------d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 441 -----------------------------------DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred -----------------------------------HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 23344555677788888888888888888888888765332
Q ss_pred --CCcc------cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHH-HHHHhcCccchHHHHHHHHHHHHhcCC
Q 035828 433 --SDTS------CWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVN-VISACGNLELAFEGKSLHGLALKSLMG 503 (781)
Q Consensus 433 --~~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~ 503 (781)
++.. +--.+...+-..++++.|.+.|..+.+.. |+.+.-.. +.......+...+|...++...... .
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~ 561 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-S 561 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-c
Confidence 2221 12223444555678889999999988853 66554333 3323344567777877777776543 2
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHhhhcC-----CCChhhHHHHHHHHH------------hCCChhHHHHHHhhc-CC
Q 035828 504 LDTRVQNALITMYGRCRDIKSASTVFESCY-----NCNLCTWNCMISAFS------------QNKAEVRALELFRHL-EF 565 (781)
Q Consensus 504 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~-~~ 565 (781)
.++..++-+-..+.+..++..|.+-|+.+. .+|..+.-+|.+.|. ..+..++|+++|.+. ..
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc
Confidence 244455545557777777777777444332 223332223333221 233456677777766 54
Q ss_pred CC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 035828 566 EP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFH 644 (781)
Q Consensus 566 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 644 (781)
.| |...-+.+--.++..|++..|..+|..+.+.... ...+|-.+.++|...|++..|+++|+
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-----------------~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-----------------FEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-----------------CCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 55 4455555555566667777777777666665441 11146666777777777777777776
Q ss_pred HHHhCC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 035828 645 EMCNSG-IRPTKSSVISLLSACSHSGLVDEGLQYYNNML 682 (781)
Q Consensus 645 ~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 682 (781)
...+.- -..+......|.+++...|++.+|.+.+....
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 655432 23344566666667766677777666666654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-15 Score=140.55 Aligned_cols=422 Identities=16% Similarity=0.149 Sum_probs=289.0
Q ss_pred cchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHH---HhcCCCCcchhhhH
Q 035828 38 VVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSI---KAGMIADSSLCNVF 114 (781)
Q Consensus 38 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l 114 (781)
+.+=|.|+.. ...|...++--+|+.|.+.|++.+...-..|++..+-.+.-+--..-+++.. ..| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455666654 4567899999999999999999888887777776665554333333344443 333 2333332
Q ss_pred HHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHH
Q 035828 115 VNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGK 194 (781)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 194 (781)
+.|++.+ ++-+.......+|..||.++|+.-..+.|.+++++-.+...+.+..+|+.+|.+.+-.. .+
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cH
Confidence 3455443 44444445667999999999999999999999999999999999999999998876443 38
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHH----HhccCC----CCCcccHHHHHHHHHhCCChhH-HHHHH
Q 035828 195 VIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAER----AFWGMT----CKDVVSWNAIIDGFALNGKFEE-AFDLL 265 (781)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~----~~~~~~----~~~~~~~~~li~~~~~~~~~~~-a~~~~ 265 (781)
.++.+|+.....|+ ..++|+++.+..+.|+++.|.+ ++.+|+ +|...+|..+|..+++.++..+ +..+.
T Consensus 259 ~Lv~EMisqkm~Pn--l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 259 KLVAEMISQKMTPN--LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred HHHHHHHHhhcCCc--hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 89999999988866 9999999999999998877654 445554 6888999999999999888755 44444
Q ss_pred HHHHH----cC--CCCC-CHHHHHHHHHHHhcccchhhhhhHHHHHHHhc----CCCC---hHHHHHHHHHHHhcCCHHH
Q 035828 266 HEMQL----MR--SVEP-DIATVVTLISLCADSLLLREGRSVHGYAIRRL----LGYD---LLMMNSLMDFYSKSNSLSK 331 (781)
Q Consensus 266 ~~m~~----~~--~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~ 331 (781)
.+++. +. .+.| |...|..-+..|.+..+.+.|.++...+.... +.|+ ...|..+....+.....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 11 0223 45567888888989999999998887776432 2333 3345667777888888888
Q ss_pred HHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHH
Q 035828 332 AELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMH 411 (781)
Q Consensus 332 a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 411 (781)
....|+.|.. +-.-|+..+...++++....+.++...+++..+...|...+...-.-++.
T Consensus 417 ~~~~Y~~lVP--------------------~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~ 476 (625)
T KOG4422|consen 417 TLKWYEDLVP--------------------SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM 476 (625)
T ss_pred HHHHHHHhcc--------------------ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 8888888877 66778899999999999999999999999999999987777666666666
Q ss_pred HHHhcC-CH--------HH-----HHHHHHhhcC--------CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 035828 412 MYINCG-DL--------VA-----AFSLLQRISH--------NSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASP 469 (781)
Q Consensus 412 ~~~~~~-~~--------~~-----a~~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p 469 (781)
.+++.. +. .. |..+++..+. +-.....+.+.-.+.+.|+.++|.++|..+.++++-.|
T Consensus 477 ~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 477 LLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred HHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 666544 11 11 1112221111 11333455555556666666666666666655554444
Q ss_pred ChhhHH---HHHHHhcCccchHHHHHHHHHHH
Q 035828 470 DSVTLV---NVISACGNLELAFEGKSLHGLAL 498 (781)
Q Consensus 470 ~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~ 498 (781)
-....+ -+++.....++...|...++.+.
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444443 23333344444444444444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-15 Score=167.03 Aligned_cols=151 Identities=16% Similarity=0.136 Sum_probs=75.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcC----------CCCC--
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRPT-----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYD----------VRPE-- 690 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~-- 690 (781)
..|...|++++|+..|+++.+. .|. ......+..++...|++++|.+.++++.+... -.|+
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 3445555566666555555432 111 12333444455555556666655555543210 0011
Q ss_pred -cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 035828 691 -TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMY 767 (781)
Q Consensus 691 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 767 (781)
...+..++..+...|++++|++.++++ ...| +...+..++..+...|++++|++.++++.+++|+++..+..++..+
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 112334445555556666666555554 2222 3334455555555556666666666666666666666555666666
Q ss_pred HhcCChhhHHhhc
Q 035828 768 VALGRWKDAVEIG 780 (781)
Q Consensus 768 ~~~g~~~~A~~l~ 780 (781)
...|++++|.+++
T Consensus 438 l~~~~~~~A~~~~ 450 (765)
T PRK10049 438 LDLQEWRQMDVLT 450 (765)
T ss_pred HHhCCHHHHHHHH
Confidence 6666666655543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-14 Score=158.37 Aligned_cols=182 Identities=11% Similarity=0.030 Sum_probs=114.5
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 035828 252 FALNGKFEEAFDLLHEMQLMRSVEPDIA-TVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLS 330 (781)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 330 (781)
..+.|+++.|++.|++..+ ..|+.. ....++..+...|+.++|...++..... -.........+...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESK---AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHh---hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 4577777888888887776 445542 2126666666667777777777776611 1112233333355677778888
Q ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHH
Q 035828 331 KAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALM 410 (781)
Q Consensus 331 ~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 410 (781)
+|.++|+++.+ .-+-+...+..++
T Consensus 120 ~Aiely~kaL~--------------------------------------------------------~dP~n~~~l~gLa 143 (822)
T PRK14574 120 QALALWQSSLK--------------------------------------------------------KDPTNPDLISGMI 143 (822)
T ss_pred HHHHHHHHHHh--------------------------------------------------------hCCCCHHHHHHHH
Confidence 88888887755 1112234445566
Q ss_pred HHHHhcCCHHHHHHHHHhhcCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCccchH
Q 035828 411 HMYINCGDLVAAFSLLQRISHN-SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPD-SVTLVNVISACGNLELAF 488 (781)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~ 488 (781)
..+...++.++|++.++++... |+...+..++..+...++..+|++.++++.+.. |+ ...+..++.++.+.|-..
T Consensus 144 ~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 144 MTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcH
Confidence 6777788888888888877443 554455444444444566666999999998853 54 455566777777777777
Q ss_pred HHHHHHHH
Q 035828 489 EGKSLHGL 496 (781)
Q Consensus 489 ~a~~~~~~ 496 (781)
.|.++...
T Consensus 221 ~a~~l~~~ 228 (822)
T PRK14574 221 PALRLAKE 228 (822)
T ss_pred HHHHHHHh
Confidence 77766554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-15 Score=160.99 Aligned_cols=349 Identities=11% Similarity=-0.005 Sum_probs=168.4
Q ss_pred hcCChhHHHHHhccCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhh
Q 035828 223 QCGDIEAAERAFWGMTCK------DVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLRE 296 (781)
Q Consensus 223 ~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~ 296 (781)
+..+++.---.|...++. +......++..+.+.|++++|+.+++...... .-+......+..+....|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHH
Confidence 444555444444444321 22334445666667777777777777776632 1122233333344445666666
Q ss_pred hhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhc
Q 035828 297 GRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILP 376 (781)
Q Consensus 297 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~ 376 (781)
|...++.+.+..+. +...+..+...+...|++++|...+++...
T Consensus 95 A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~----------------------------------- 138 (656)
T PRK15174 95 VLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWL----------------------------------- 138 (656)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------------
Confidence 66666666554322 344455555555556666666655555433
Q ss_pred ccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHH
Q 035828 377 SCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIK 456 (781)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 456 (781)
+.|+ +...+..+...+...|++++|..
T Consensus 139 ----------------------l~P~-------------------------------~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 139 ----------------------AFSG-------------------------------NSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred ----------------------hCCC-------------------------------cHHHHHHHHHHHHHCCChHHHHH
Confidence 1111 23334444444445555555555
Q ss_pred HHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---
Q 035828 457 TFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY--- 533 (781)
Q Consensus 457 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 533 (781)
.++.+.... |+.......+..+...|++++|...++.+.+....++......+...+.+.|++++|...++...
T Consensus 166 ~~~~~~~~~---P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 166 LARTQAQEV---PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHHHhC---CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 554444322 22111111111233444444444444444333211222222333444555566666655555443
Q ss_pred CCChhhHHHHHHHHHhCCChhH----HHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHH
Q 035828 534 NCNLCTWNCMISAFSQNKAEVR----ALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFIS 607 (781)
Q Consensus 534 ~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 607 (781)
..+...+..+...+...|++++ |+..|++. ...|+ ...+..+...+...|++++|...++...+.. |+.
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~--- 317 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDL--- 317 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC---
Confidence 1223445555556666666554 56666666 45554 2344444445555555555555555544432 211
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 608 SALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSS-VISLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 608 ~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
...+..+...+...|++++|++.++++.+ ..|+... +..+..++...|+.++|...|++.++.
T Consensus 318 ------------~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 318 ------------PYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11344555666666666666666666655 2343322 222344555566666666666666543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-14 Score=144.66 Aligned_cols=677 Identities=12% Similarity=0.017 Sum_probs=353.2
Q ss_pred CCCCCCCccchhHHHHHhhcCCchhHHHHhhhhcCC----CcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhH
Q 035828 1 RGFLAHLPTSTSLLTAYSNVSYFESSLALFYETCNK----DVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTL 76 (781)
Q Consensus 1 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 76 (781)
.|+.|+-.||..+|..|+..|+.+.|- +|.-|..+ +...++.++.+-.+.++.+.+. .|.+.||
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 489999999999999999999999998 88766543 3345677777766777766664 5677778
Q ss_pred HHHHHHHhccCcccchhHHHHHHHHh-------cC-----------------CCCcchhhhHHHHhhccCChhhHHHHhc
Q 035828 77 LIIVSALTQMNCLKQGRVVHCLSIKA-------GM-----------------IADSSLCNVFVNMYAKCGDLNSSECTFS 132 (781)
Q Consensus 77 ~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~-----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~ 132 (781)
..|+.+|.++||+.....+-+.|... |+ -||. ...+....-.|-++-+.+++.
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHHHHHHHh
Confidence 88888887777766533333323221 11 0111 011111111122222222221
Q ss_pred cC---------------------------------C-CCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHH
Q 035828 133 GM---------------------------------H-CADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLS 178 (781)
Q Consensus 133 ~~---------------------------------~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 178 (781)
.+ . .++..+|.+++..-..+|+.+.|..++.+|++.|++.+.+-|.
T Consensus 164 ~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred hCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 11 1 3677888888888888899999999999999999988888777
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCCh
Q 035828 179 SAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKF 258 (781)
Q Consensus 179 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 258 (781)
.++-+ .++...+..+...|...|+.++ ..++..-+..+..+|....+... .+....+++-+.+-+-.|
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~--seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg-- 311 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPG--SETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRG-- 311 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCC--cchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcc--
Confidence 77766 7777888888888888888766 77877766666665553322221 112222222222222222
Q ss_pred hHHHHHH------------HHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCC---CChHHHHHHHHHH
Q 035828 259 EEAFDLL------------HEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLG---YDLLMMNSLMDFY 323 (781)
Q Consensus 259 ~~a~~~~------------~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~ 323 (781)
..|.+.+ .+-.-.| +......|.. ..-....|.-+.++++...+..-... .++..+..++.-|
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg-~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy 389 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLG-TDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY 389 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhc-cccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH
Confidence 1111111 1111112 2222222221 11122244455555555444422111 1223333333333
Q ss_pred Hhc----------------------CCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhc------ccCCchhhhhhh
Q 035828 324 SKS----------------------NSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLC------SQFSFSTLLAIL 375 (781)
Q Consensus 324 ~~~----------------------~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~------~~~~~~~~~~ll 375 (781)
.+. .+..+..++........+ ...+..-...++.+.- ..+-...-..++
T Consensus 390 Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~---lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 390 FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSF---LRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchH---HHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 322 112222222222111000 0000000000100000 001111223344
Q ss_pred cccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-----CCcccHHHHHHHHHhCCC
Q 035828 376 PSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN-----SDTSCWNIVIVACTQNGH 450 (781)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~li~~~~~~~~ 450 (781)
-.|++..+..++...-+.....-+. ..|..||+.++...+++.|..+.+++... -|..-+..+.+.+.+.+.
T Consensus 467 l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 4444444444444332222222111 56888999999999999999999988332 244557888899999999
Q ss_pred hHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHh
Q 035828 451 FQEAIKTFKSMTQQQNASPD-SVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVF 529 (781)
Q Consensus 451 ~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 529 (781)
...+..++.++.+.-...|+ ..++--++......|+.+...++++.+...|+.-+ ..++....+.++...|.+++
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~ 619 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAP 619 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcc
Confidence 99999999999886423343 34556677888889999999999999998887653 44555566778888888877
Q ss_pred hhcCC---CCh---hhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHH---HHHhCC
Q 035828 530 ESCYN---CNL---CTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGH---VFHLGF 600 (781)
Q Consensus 530 ~~~~~---~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~ 600 (781)
+.... +.+ ..|..++.. -...+++.+..+ ..-+..|.+.|++..+..+.+. ..+.+-
T Consensus 620 e~~~qkyk~~P~~~e~lcrlv~k-e~td~~qk~mDl-------------s~~iq~f~k~g~~~~a~di~etpG~r~r~~R 685 (1088)
T KOG4318|consen 620 EPEEQKYKPYPKDLEGLCRLVYK-ETTDSPQKTMDL-------------SIPIQKFEKLGSCVDAGDITETPGVRCRNGR 685 (1088)
T ss_pred hHHHHHhcCChHHHHHHHHHHHh-hccccHHHHHhh-------------cchhHHHHhcccccchhhccccCcccccCCC
Confidence 65541 111 111111110 000111111110 0001113333333333333221 000000
Q ss_pred CCC-----chHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC---cHH
Q 035828 601 QEN-----SFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG---LVD 672 (781)
Q Consensus 601 ~~~-----~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~---~~~ 672 (781)
..+ ......++... .+......++..|.+.|+++.|..+|.+++ +.|+..+...|...+.+.. |+.
T Consensus 686 Dr~~de~e~~~lEll~elt---~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvP 759 (1088)
T KOG4318|consen 686 DRDTDEGEIVPLELLLELT---HELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVP 759 (1088)
T ss_pred ccccccCccccHHHHHHHH---hHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccch
Confidence 000 00000000000 011123336777888899999999999888 7888887777777776533 445
Q ss_pred HHHHHHHHhHHHcCCCCCcchH-HHHHHHhhhcCChH-HHHHHHHhCC--CCC-CcchHHHHHHHHHhcC
Q 035828 673 EGLQYYNNMLEEYDVRPETEHH-VCIVDMLGRSGKLQ-EAYEFIKNLP--IQP-KPGVWGAMLSACSHHG 737 (781)
Q Consensus 673 ~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~-~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~g 737 (781)
++....++..+.....|....+ .--+. +..+++.. -|.+.+.+.. .+| +...+..+++.+.+..
T Consensus 760 e~q~e~ekas~~~~~f~ttt~~~~~~a~-~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 760 EIQAETEKASELRTLFPTTTCYYEGYAF-FATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred hHHHHHHHHHhcccccccchHhhhhhHH-HHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 5555555543332222332222 22222 23334444 5667776652 222 4455666666655443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-14 Score=156.99 Aligned_cols=91 Identities=9% Similarity=-0.054 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhc
Q 035828 214 TNSLISMYSQCGDIEAAERAFWGMT--CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPD-IATVVTLISLCAD 290 (781)
Q Consensus 214 ~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~ 290 (781)
+...-..+.+.|+++.|++.|++.. .|+...|..+..+|.+.|++++|++.++...+ +.|+ ...+..+-.++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~---l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALE---LDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHH
Confidence 3445566777888888888887764 45667788888888888888888888888877 4454 4467777778888
Q ss_pred ccchhhhhhHHHHHHHh
Q 035828 291 SLLLREGRSVHGYAIRR 307 (781)
Q Consensus 291 ~~~~~~a~~~~~~~~~~ 307 (781)
.|++++|..-+..+...
T Consensus 207 lg~~~eA~~~~~~~~~~ 223 (615)
T TIGR00990 207 LGKYADALLDLTASCII 223 (615)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888777655544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-12 Score=135.23 Aligned_cols=619 Identities=12% Similarity=0.110 Sum_probs=347.4
Q ss_pred ccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhcc---CCCCCeeehHHHHHHHhhCCChhhHHHH
Q 035828 85 QMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSG---MHCADTVSWNTIMSGCLHNNYPEKCLLY 161 (781)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~ 161 (781)
-.|+.++|..++.+.+++. +.....|.+|-..|-..|+.+++...+-. +...|...|-.+-.-..+.|++.+|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3477777777777777664 45566677777777777777766665432 2233555666666666666777777777
Q ss_pred HHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHH----HHHHHHHhcCChhHHHHHhccC
Q 035828 162 FREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTN----SLISMYSQCGDIEAAERAFWGM 237 (781)
Q Consensus 162 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~----~ll~~~~~~g~~~~a~~~~~~~ 237 (781)
|.+..+.. +++...+.-=...|-+.|+...|..-+..+....++.+ ..-.- .+++.+...++-+.|.+.++..
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d--~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD--IERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 76665532 12222222233445566666666666666655543222 22222 2344455556667777666655
Q ss_pred CC-----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHH--------------------------HHHHH
Q 035828 238 TC-----KDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATV--------------------------VTLIS 286 (781)
Q Consensus 238 ~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~--------------------------~~ll~ 286 (781)
.. -+...++.++..+.+...++.+......+.... .++|..-+ ..+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~-~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRE-SEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc-cCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 42 244557777777778888888777777666522 22222211 11222
Q ss_pred HHhcccchhhhhhHHHHHHHhcC--CCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcc
Q 035828 287 LCADSLLLREGRSVHGYAIRRLL--GYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCS 364 (781)
Q Consensus 287 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 364 (781)
++.+.+..+....+...+.+.+. .-+...|.-+..+|.+.|++.+|.++|..+..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~----------------------- 442 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN----------------------- 442 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-----------------------
Confidence 23344444444445555555542 23455566666666666777776666666644
Q ss_pred cCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-CC-CcccHHHHH
Q 035828 365 QFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISH-NS-DTSCWNIVI 442 (781)
Q Consensus 365 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li 442 (781)
...--+..+|-.+..+|...|..++|...|+.... .| +...--.|.
T Consensus 443 --------------------------------~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La 490 (895)
T KOG2076|consen 443 --------------------------------REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA 490 (895)
T ss_pred --------------------------------CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence 22333455666666777777777777777766532 24 333444555
Q ss_pred HHHHhCCChHHHHHHHHHHHHcC-------CCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhc--------------
Q 035828 443 VACTQNGHFQEAIKTFKSMTQQQ-------NASPDSVTLVNVISACGNLELAFEGKSLHGLALKSL-------------- 501 (781)
Q Consensus 443 ~~~~~~~~~~~A~~~~~~m~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------- 501 (781)
..+-+.|+.++|++.++.+..-+ ...|+.....-....+.+.|+.++-..+...|+...
T Consensus 491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r 570 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKR 570 (895)
T ss_pred HHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 66677777777777777653111 133333333344444555666555444433333211
Q ss_pred --------CCCChHHHHHHHHHHHhcCChHHHHHHhhhc--------CCCChh----hHHHHHHHHHhCCChhHHHHHHh
Q 035828 502 --------MGLDTRVQNALITMYGRCRDIKSASTVFESC--------YNCNLC----TWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 502 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
.+........++.+-.+.++......-...- ..-.+. .+.-++.++++.+++++|+.+..
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~ 650 (895)
T KOG2076|consen 571 RRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVF 650 (895)
T ss_pred HHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1112222233334444443332222221111 011111 33456778899999999999988
Q ss_pred hc-C----CCCCHh--HHH-HHHHHhcccCchHHHHHHHHHHHHh-CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh
Q 035828 562 HL-E----FEPNEI--SIV-SILSACTQLGVLRHGKQIHGHVFHL-GFQENSFISSALLDMYSNCKSNAAWSSMISAYGY 632 (781)
Q Consensus 562 ~~-~----~~p~~~--~~~-~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 632 (781)
.+ + ..++.. .+. ..+.++...+++..|...++.|+.. ++..++. -...||...+...+
T Consensus 651 ~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~-------------q~~l~n~~~s~~~~ 717 (895)
T KOG2076|consen 651 TALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY-------------QLNLWNLDFSYFSK 717 (895)
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH-------------HHHHHHHHHHHHHH
Confidence 87 2 233321 333 3455667889999999999888664 3332222 12256655555555
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHH--HHhcccCcHHHHHHHHHHhHHHcCCCCCcchHH-HHHHHhhh------
Q 035828 633 HGKGWEAIELFHEMCNSGIRPTKSSVISLL--SACSHSGLVDEGLQYYNNMLEEYDVRPETEHHV-CIVDMLGR------ 703 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~------ 703 (781)
.++-.--.+++..... ..|+......++ .-+...+.+.-|++.+-.+... .|+...++ .++.++..
T Consensus 718 ~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~---~pd~Pl~nl~lglafih~a~qr~ 792 (895)
T KOG2076|consen 718 YGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ---NPDSPLINLCLGLAFIHLALQRR 792 (895)
T ss_pred HHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHHHHHHH
Confidence 5554444444444433 233332222222 2334567888899988777644 67643333 23222221
Q ss_pred ----cCChHHHHHHHHhC---C-CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc------------hHHHH
Q 035828 704 ----SGKLQEAYEFIKNL---P-IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG------------YYISL 763 (781)
Q Consensus 704 ----~g~~~~A~~~~~~~---~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------~~~~l 763 (781)
.-..-+.+.++.+. . ....-.+.-.++++|...|=.-.|+.+|+++++..|.+.. +.++|
T Consensus 793 v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL 872 (895)
T KOG2076|consen 793 VSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNL 872 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhh
Confidence 11233445555444 2 1123456778999999999999999999999999865332 46789
Q ss_pred HHHHHhcCChhhHHhhcC
Q 035828 764 SNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 764 ~~~~~~~g~~~~A~~l~~ 781 (781)
..+|...|+...|.+|++
T Consensus 873 ~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 873 HLIYKKSGNMQLARQILE 890 (895)
T ss_pred hhhhccCCcHHHHHHHHH
Confidence 999999999999999863
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-14 Score=160.11 Aligned_cols=363 Identities=12% Similarity=0.035 Sum_probs=261.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-CC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHH
Q 035828 400 SNNTIGVNALMHMYINCGDLVAAFSLLQRISH-NS-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNV 477 (781)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l 477 (781)
..+.....-.+......|+.++|.+++.+... .| +...+..+...+...|++++|..+|++..+.. +.+......+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 34555666677778888999999999988754 33 34458888888999999999999999988742 2334445566
Q ss_pred HHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC---CChhhHHHHHHHHHhCCChh
Q 035828 478 ISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN---CNLCTWNCMISAFSQNKAEV 554 (781)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 554 (781)
...+...|+.++|...++.+.+.. +.+.. +..+..++...|+.++|...++++.. .+...+..+..++...+..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 677888999999999999888763 33445 77788888999999999999988763 34456666777888889999
Q ss_pred HHHHHHhhcCCCCCHh------HHHHHHHHh-----cccCch---HHHHHHHHHHHHh-CCCCCchHHHHHHHhhhcCCC
Q 035828 555 RALELFRHLEFEPNEI------SIVSILSAC-----TQLGVL---RHGKQIHGHVFHL-GFQENSFISSALLDMYSNCKS 619 (781)
Q Consensus 555 ~A~~~~~~~~~~p~~~------~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 619 (781)
+|++.+++....|+.. ....++... ...+++ +.|.+.++.+.+. ...|+... .+..
T Consensus 168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~--~~~~------- 238 (765)
T PRK10049 168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA--DYQR------- 238 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch--HHHH-------
Confidence 9999998873355421 111222222 122234 6677788877754 33333211 0000
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-----cch
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIR-PTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-----TEH 693 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~ 693 (781)
.+...+..+...|++++|+..|+++.+.+-. |+. ....+..++...|++++|...|+++.+. .|. ...
T Consensus 239 --a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~---~p~~~~~~~~~ 312 (765)
T PRK10049 239 --ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH---PETIADLSDEE 312 (765)
T ss_pred --HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc---CCCCCCCChHH
Confidence 1111123445779999999999999987532 433 2222567889999999999999998754 332 245
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-CCC-------------Cc---chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNLP-IQP-------------KP---GVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------------~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
...+..++.+.|++++|.++++++. ..| +. ..+..+...+...|++++|+..++++.+..|++
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6667778899999999999998872 333 21 134456667888999999999999999999999
Q ss_pred CchHHHHHHHHHhcCChhhHHhhcC
Q 035828 757 VGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 757 ~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
+..+..++.++...|+.++|+++++
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999999998763
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-11 Score=121.76 Aligned_cols=449 Identities=10% Similarity=0.021 Sum_probs=220.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHH----HHhcCCCChHHHHHHHHHHHh
Q 035828 250 DGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYA----IRRLLGYDLLMMNSLMDFYSK 325 (781)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~ 325 (781)
-++++..-++.|..+++..++. ++-|...+.+-...--..|+.+.+.+++++- ...|+..+..-|-.=...+-.
T Consensus 414 lAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 3445555566666666666653 4445555555444445566666666655443 344666666666555555556
Q ss_pred cCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhH
Q 035828 326 SNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIG 405 (781)
Q Consensus 326 ~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 405 (781)
.|..-.+..+...... -|+... --..+
T Consensus 492 agsv~TcQAIi~avig--------------------igvEee---------------------------------d~~~t 518 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIG--------------------IGVEEE---------------------------------DRKST 518 (913)
T ss_pred cCChhhHHHHHHHHHh--------------------hccccc---------------------------------hhHhH
Confidence 6666555555555433 011000 00112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcC-CC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcC
Q 035828 406 VNALMHMYINCGDLVAAFSLLQRISH-NS-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGN 483 (781)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 483 (781)
+..--..|.+.+.++-|..+|....+ -| +...|...+..--..|..+....+|++.... ++-....+.......-.
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWK 596 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHh
Confidence 22222233333333333333333211 12 2333444444444445555555555555443 22222223233333344
Q ss_pred ccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC--CChhhHHHHHHHHHhCCChhHHHHHHh
Q 035828 484 LELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN--CNLCTWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
.|++..|..++..+.+.... +..+|.+-+.......+++.|+.+|.+... +....|.--+....-.++.++|+++++
T Consensus 597 agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 45555555555555444322 445555555555555555555555554442 222344433444444555555555555
Q ss_pred hc-CCCCCHhH-HHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCC-hhhHHHHHHHHHhcCChHH
Q 035828 562 HL-EFEPNEIS-IVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKS-NAAWSSMISAYGYHGKGWE 638 (781)
Q Consensus 562 ~~-~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~li~~~~~~~~~~~ 638 (781)
+. ...|+-.- |..+-..+...++++.|...|..=. ..||+ +..|-.+...-.+.|..-.
T Consensus 676 e~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~------------------k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 676 EALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT------------------KKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc------------------ccCCCCchHHHHHHHHHHHhcchhh
Confidence 54 44454332 2222223334444444444332111 11111 1134445555555566666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 639 AIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 639 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
|..++++.+-++ +-+...|...|+.-.+.|+.+.|..++.+.+++ -|+ ...|..-|.+..+.++-.++++.+++.
T Consensus 738 AR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe---cp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 738 ARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE---CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred HHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 666666665432 224456666666666666666666666666654 333 455666666666666655556656555
Q ss_pred CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 718 PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 718 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
. -|+.+.-++...+....++++|..+++++++.+|+...++..+-.-+.+.|.-++-.+++
T Consensus 814 e--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 814 E--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred c--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 3 233344444445555566666666666666666666666666666666666555544443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-13 Score=150.63 Aligned_cols=383 Identities=11% Similarity=0.028 Sum_probs=232.9
Q ss_pred CCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-CcccHHHH--HHHHHhCCChHHHH
Q 035828 379 NSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNS-DTSCWNIV--IVACTQNGHFQEAI 455 (781)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~l--i~~~~~~~~~~~A~ 455 (781)
.+.|+.+.|...+....+..-.-...++ .++..+...|+.++|...+++.. .| +...+..+ ...+...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4679999999999888765433222344 88888889999999999999985 54 33334444 55788889999999
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC-
Q 035828 456 KTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN- 534 (781)
Q Consensus 456 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 534 (781)
++|+++.+.. +-+...+..+...+...++.++|...+..+.... |+...+..++..+...++..+|++.++++.+
T Consensus 123 ely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 123 ALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999864 2223455566777889999999999999887663 4455555555555556677679999998873
Q ss_pred -C-ChhhHHHHHHHHHhCCChhHHHHHHhhc-C-CCCCHhH------HHHHHHHh-----cccCchHH---HHHHHHHHH
Q 035828 535 -C-NLCTWNCMISAFSQNKAEVRALELFRHL-E-FEPNEIS------IVSILSAC-----TQLGVLRH---GKQIHGHVF 596 (781)
Q Consensus 535 -~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~p~~~~------~~~ll~~~-----~~~~~~~~---a~~~~~~~~ 596 (781)
| +...+..++.++.+.|-...|+++..+- + ..|...- ....+..- ....++.. |..-++.+.
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 3 4567788889999999999999998877 3 4443321 11122111 11223333 333344433
Q ss_pred H-hCCCCCc-hH-HHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHH
Q 035828 597 H-LGFQENS-FI-SSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDE 673 (781)
Q Consensus 597 ~-~~~~~~~-~~-~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 673 (781)
. .+..|.. .. ..+.++ .+.++...+++.++++.|+.|+..|.+....+-..+..+|...+++++
T Consensus 279 ~~~~~~p~~~~~~~~~~~D-------------rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 279 TRWGKDPEAQADYQRARID-------------RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred hhccCCCccchHHHHHHHH-------------HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 3 2222321 11 122222 233455566666666666666665544333455566666666666666
Q ss_pred HHHHHHHhHHHcC----CCCCcchHHHHHHHhhhcCChHHHHHHHHhCC-CCC-------------Ccc---hHHHHHHH
Q 035828 674 GLQYYNNMLEEYD----VRPETEHHVCIVDMLGRSGKLQEAYEFIKNLP-IQP-------------KPG---VWGAMLSA 732 (781)
Q Consensus 674 a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------------~~~---~~~~l~~~ 732 (781)
|..+++.+....+ ..++......|.-+|..++++++|..+++++. ..| ++. ....++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 6666666544311 01112223455666666666666666665552 112 111 11223444
Q ss_pred HHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 733 CSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+...|++.+|++.++++....|.|+.....++.++..+|+..+|.+++
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~ 473 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQEL 473 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 455666666666666666666666666666666666666666666554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-12 Score=131.25 Aligned_cols=597 Identities=12% Similarity=0.062 Sum_probs=322.2
Q ss_pred ccCChhhHHHHhccCCC---CCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCC-CcchHHHHHHHhhccCChhHHHH
Q 035828 120 KCGDLNSSECTFSGMHC---ADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQA-DNVSLSSAVAASACLGELSYGKV 195 (781)
Q Consensus 120 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~ 195 (781)
..|++++|.+++.++.+ .+...|-+|...|-..|+.+++...+-.. ....| |..-|..+-......|+++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 33888888888887753 35567888888888888888887665433 22223 33455555556666677777777
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCc----ccHHH----HHHHHHhCCChhHHHHHHHH
Q 035828 196 IHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDV----VSWNA----IIDGFALNGKFEEAFDLLHE 267 (781)
Q Consensus 196 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~----li~~~~~~~~~~~a~~~~~~ 267 (781)
.+..+++..+.. ...+---+..|-+.|+...|.+-|.++-+.+. .-... .++.+...++.+.|++.++.
T Consensus 229 cy~rAI~~~p~n---~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 229 CYSRAIQANPSN---WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHhcCCcc---hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777665432 22222334455566666666665555532211 11111 23334444555555555555
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeee
Q 035828 268 MQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVS 347 (781)
Q Consensus 268 m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 347 (781)
....++-..+...++++...+.+...++.+......+.....++|..-+.+- - .+ ..-+......+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~-~~-----~~~~~~~~~~~---- 371 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----E-RR-----REEPNALCEVG---- 371 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----h-hc-----cccccccccCC----
Confidence 5443223333344444444444444444444444443332222222111000 0 00 00000000000
Q ss_pred HHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCC--CchhHHHHHHHHHHhcCCHHHHHHH
Q 035828 348 WNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFS--NNTIGVNALMHMYINCGDLVAAFSL 425 (781)
Q Consensus 348 ~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~ 425 (781)
.++.++... ..+.-.+......+....+.+.+.+.... -+...|.-+.++|.+.|++.+|..+
T Consensus 372 --------------~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 372 --------------KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred --------------CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 112222222 12233344556666666677777777644 4567888899999999999999999
Q ss_pred HHhhcCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHH-HHHHHhcCccchHHHHHHHHHHH---
Q 035828 426 LQRISHNS---DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLV-NVISACGNLELAFEGKSLHGLAL--- 498 (781)
Q Consensus 426 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~--- 498 (781)
|..+...+ +...|--+..+|...|.+++|++.|+..... .|+..--. .|-..+.+.|+.++|.+.+..+.
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 99986654 5667888999999999999999999999884 46543322 33344667788888887777743
Q ss_pred -----HhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcC--CCCCHhH
Q 035828 499 -----KSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLE--FEPNEIS 571 (781)
Q Consensus 499 -----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~p~~~~ 571 (781)
..+..|...+.......+...|+.++-...-..|..+.. ....+ +- +-.++... ...+ ..-...+
T Consensus 514 ~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~--~~~~~--f~---~~~k~r~~-~~~~~~~~~~~~~ 585 (895)
T KOG2076|consen 514 GRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFL--KKRYI--FP---RNKKKRRR-AIAGTTSKRYSEL 585 (895)
T ss_pred ccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HHHHh--cc---hHHHHHHH-hhccccccccchh
Confidence 334455566655666667777776663333222211100 00000 00 00000000 0000 1122223
Q ss_pred HHHHHHHhcccCchHHHHHHHHHH-HHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 035828 572 IVSILSACTQLGVLRHGKQIHGHV-FHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSG 650 (781)
Q Consensus 572 ~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 650 (781)
...+..+-.+.++......-...- ...+......+..... ..+.-+|..+++.+++++|+.+...+....
T Consensus 586 ~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf---------el~~e~i~~L~k~~r~qeAl~vv~~a~~~~ 656 (895)
T KOG2076|consen 586 LKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF---------ELFRELILSLAKLQRVQEALSVVFTALEAY 656 (895)
T ss_pred HHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH---------HHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 333333333333322221111100 0000000000000000 124556778899999999999999888754
Q ss_pred C--CCCH---HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC---cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 035828 651 I--RPTK---SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE---TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP 721 (781)
Q Consensus 651 ~--~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 721 (781)
. .++. ..-...+.++...+++..|...++.|+..++...+ ...|+...+.+.+.++-.-=..++..+ ..+|
T Consensus 657 ~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~ 736 (895)
T KOG2076|consen 657 IFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNK 736 (895)
T ss_pred hhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 2 2222 12233445667889999999999999877554433 344554445555555433333444433 3344
Q ss_pred CcchHHHHH--HHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 722 KPGVWGAML--SACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 722 ~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
+....-.++ .-...++.+.-|.+.+-+++...|++|-+...+|.++.+.
T Consensus 737 ~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 737 DDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred cCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 332222222 2245688999999999999999999999988888877643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-09 Score=108.30 Aligned_cols=470 Identities=12% Similarity=0.055 Sum_probs=246.8
Q ss_pred HHHHhhccCChhhHHHHhccCC---CCCeeehHHHHHHHhhCCChhhHHHHHHH----HhhcCCCCCcchHHHHHHHhhc
Q 035828 114 FVNMYAKCGDLNSSECTFSGMH---CADTVSWNTIMSGCLHNNYPEKCLLYFRE----MGWSGEQADNVSLSSAVAASAC 186 (781)
Q Consensus 114 li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~g~~p~~~t~~~ll~~~~~ 186 (781)
|.-+|++..-++.|..+++... ..+...|-+-...--.+|+.+...+++.+ +...|+..+...|..=...|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 3344555555666666666553 23555565544444556666666666544 4455666666666555555554
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHH
Q 035828 187 LGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLH 266 (781)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 266 (781)
.|..-..+.+....+..|.+... --.||+.-...|.+.+.++-|..+|.
T Consensus 492 agsv~TcQAIi~avigigvEeed-------------------------------~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEED-------------------------------RKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred cCChhhHHHHHHHHHhhccccch-------------------------------hHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 44433333333333333332221 22356666666667777777777776
Q ss_pred HHHHcCCCCCC-HHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCe
Q 035828 267 EMQLMRSVEPD-IATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDL 345 (781)
Q Consensus 267 ~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 345 (781)
...+ +.|. ...+......--..|..+....++...+..-.+ ....|-....-+-..||+..|+.++....+
T Consensus 541 ~alq---vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~---- 612 (913)
T KOG0495|consen 541 HALQ---VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFE---- 612 (913)
T ss_pred HHHh---hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHH----
Confidence 6666 3333 334444444445566667777777766665332 334444555566667888888877776544
Q ss_pred eeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 035828 346 VSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSL 425 (781)
Q Consensus 346 ~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 425 (781)
-...+...+-.-+.....+.+++.|..+
T Consensus 613 ----------------------------------------------------~~pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 613 ----------------------------------------------------ANPNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred ----------------------------------------------------hCCCcHHHHHHHHHHhhccccHHHHHHH
Confidence 0111223333444444555555666665
Q ss_pred HHhhcCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhH-HHHHHHhcCccchHHHHHHHHHHHHhcCC
Q 035828 426 LQRISHN-SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTL-VNVISACGNLELAFEGKSLHGLALKSLMG 503 (781)
Q Consensus 426 ~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 503 (781)
|.+.... |+...|.--+...--.++.++|++++++..+. -|+..-+ ..+-+.+.+.++.+.|...|..=.+. ++
T Consensus 641 lakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 641 LAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 5554332 45555555555555556677777777666663 3443322 22222223333333333322211100 11
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccC
Q 035828 504 LDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLG 583 (781)
Q Consensus 504 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~ 583 (781)
-.+..|-.|.+.--+.|.+-.|+.+++...- -+|+
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarl------------------------------kNPk--------------- 751 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARL------------------------------KNPK--------------- 751 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHh------------------------------cCCC---------------
Confidence 1223333333333333333333333333221 1221
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035828 584 VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLS 663 (781)
Q Consensus 584 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 663 (781)
+...|-..|..-.+.|..+.|..+..+.++. ++.+...|..-|.
T Consensus 752 -----------------------------------~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 752 -----------------------------------NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIW 795 (913)
T ss_pred -----------------------------------cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHH
Confidence 2234555666666666666666666655543 4444556666665
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKM 741 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 741 (781)
...+.++-......+++. .-|+.....+...|....++++|.++|.+. +..|+ ..+|.-+......+|.-++
T Consensus 796 le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 796 LEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred hccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHH
Confidence 555555544444444332 334445566666777777777777777665 44443 3466666666667777777
Q ss_pred HHHHHHHHhccCCCCCchHHHHHH
Q 035828 742 GKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 742 A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
-.+++.+...-.|.....|.....
T Consensus 870 ~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 870 QKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHhccCCCCCcHHHHHhh
Confidence 777777777777776666655443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-12 Score=121.20 Aligned_cols=201 Identities=15% Similarity=0.217 Sum_probs=147.7
Q ss_pred hCCChhHHHHHHhhcCCCCCHhHHHHHHH---HhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHH
Q 035828 549 QNKAEVRALELFRHLEFEPNEISIVSILS---ACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSS 625 (781)
Q Consensus 549 ~~~~~~~A~~~~~~~~~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 625 (781)
.+|++++|.+.|++. +.-|.....+|.. .+...|++++|...|-.+..- -. .++...-.
T Consensus 502 ~ngd~dka~~~ykea-l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i--l~---------------nn~evl~q 563 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEA-LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI--LL---------------NNAEVLVQ 563 (840)
T ss_pred ecCcHHHHHHHHHHH-HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH--HH---------------hhHHHHHH
Confidence 356666666666665 1122222122211 234456666666665443220 00 12224455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHHhhhc
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRS 704 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 704 (781)
+.+.|....+..+|++++.+.... ++.|+..+..|...|-+.|+-..|.++.-+- +..-| +..+..+|...|...
T Consensus 564 ianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhh
Confidence 667788889999999999877662 3446778888999999999999999988765 34555 478999999999999
Q ss_pred CChHHHHHHHHhC-CCCCCcchHHHHHHHHHh-cCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 035828 705 GKLQEAYEFIKNL-PIQPKPGVWGAMLSACSH-HGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG 771 (781)
Q Consensus 705 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 771 (781)
.-+++|+..|+++ -++|+..-|..++..|.+ .|++.+|..+|+...+..|++...+..|..+....|
T Consensus 640 qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 640 QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 9999999999988 589999999999999865 899999999999999999999999999888876666
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-15 Score=144.99 Aligned_cols=249 Identities=18% Similarity=0.206 Sum_probs=115.3
Q ss_pred HHHHHHHhcCChHHHHHHhhh-cC----CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccC
Q 035828 511 ALITMYGRCRDIKSASTVFES-CY----NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLG 583 (781)
Q Consensus 511 ~li~~~~~~g~~~~A~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 583 (781)
.+...+.+.|++++|+++++. +. ..++..|..+.......++++.|...++++ ...| +...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 345566677777777777743 22 223445555666666677788888888777 3333 23344445554 5777
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 035828 584 VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSG-IRPTKSSVISLL 662 (781)
Q Consensus 584 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~ 662 (781)
+++.|..++....+..-.| ..+..++..+...++++++.++++...... .+++...|..+.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~------------------~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a 153 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDP------------------RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA 153 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred ccccccccccccccccccc------------------chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 8888887776654433222 245667777889999999999999987533 345777888888
Q ss_pred HHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCc
Q 035828 663 SACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLP--IQPKPGVWGAMLSACSHHGDT 739 (781)
Q Consensus 663 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 739 (781)
..+.+.|+.++|.+.+++.++. .|+ ......++..+...|+.+++.++++... .++++..+..+..++...|++
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence 9999999999999999999876 776 6788899999999999999888887762 355677889999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 740 KMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
++|..+++++.+..|+|+.....++.++...|+.++|.++++
T Consensus 231 ~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 231 EEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999998863
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-11 Score=118.51 Aligned_cols=211 Identities=16% Similarity=0.161 Sum_probs=165.5
Q ss_pred HHhCCChhHHHHHHhhc-CCCCCHhH-HHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHH
Q 035828 547 FSQNKAEVRALELFRHL-EFEPNEIS-IVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWS 624 (781)
Q Consensus 547 ~~~~~~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 624 (781)
+.-.|+.-.|.+.|+.. ...|.... |.-+-..+....+.+.....|++..+.+..-.. +|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d-----------------vYy 398 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD-----------------VYY 398 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc-----------------hhH
Confidence 34467788888888887 55665444 777777888888899999999888876554222 333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhh
Q 035828 625 SMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLG 702 (781)
Q Consensus 625 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 702 (781)
--...+.-.+++++|..=|++.++ +.|+ ...|-.+.-+..+.+++++++..|++..++ -|+ +..|+.....+.
T Consensus 399 HRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---FP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 399 HRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---FPNCPEVYNLFAEILT 473 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHh
Confidence 334444556889999999999988 6774 457888888888999999999999999876 454 688999999999
Q ss_pred hcCChHHHHHHHHhC-CCCCC---------cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 703 RSGKLQEAYEFIKNL-PIQPK---------PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~-~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
.++++++|.+.++.+ .+.|+ +.+-..++. ++-.+|...|+++++++.+++|....++..|+....++|+
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 999999999999976 44444 222222222 2235999999999999999999999999999999999999
Q ss_pred hhhHHhhc
Q 035828 773 WKDAVEIG 780 (781)
Q Consensus 773 ~~~A~~l~ 780 (781)
.++|++++
T Consensus 553 i~eAielF 560 (606)
T KOG0547|consen 553 IDEAIELF 560 (606)
T ss_pred HHHHHHHH
Confidence 99999986
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-12 Score=118.94 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=159.4
Q ss_pred CCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcC--CCCcccHHHHHHHHHhCCChHHHHHH
Q 035828 380 SPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISH--NSDTSCWNIVIVACTQNGHFQEAIKT 457 (781)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~ 457 (781)
..|++++|.+.+.+.+...-.-....||+=+ .+-..|++++|++.|-.+.. ..+....-.+...|-...+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4678888888888887665544445555433 35678999999999987622 24666677778888889999999999
Q ss_pred HHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC--CC
Q 035828 458 FKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY--NC 535 (781)
Q Consensus 458 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~ 535 (781)
+-+.... ++.|...+..|...|-+.|+...|.+.+-+--+ -++.+..+..-|..-|....-+++|+..|++.. +|
T Consensus 581 ~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 9887664 566778888899999999999999888754432 356678888888888999999999999999765 89
Q ss_pred ChhhHHHHHHHH-HhCCChhHHHHHHhhc-C-CCCCHhHHHHHHHHhcccCc
Q 035828 536 NLCTWNCMISAF-SQNKAEVRALELFRHL-E-FEPNEISIVSILSACTQLGV 584 (781)
Q Consensus 536 ~~~~~~~l~~~~-~~~~~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~ 584 (781)
+.+-|..++..| .+.|++.+|+++|+++ . ..-|...+..|++.|...|.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999988765 5689999999999999 3 66688888999999888774
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-12 Score=127.05 Aligned_cols=245 Identities=13% Similarity=0.091 Sum_probs=121.3
Q ss_pred HHHHhcCccchHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChh
Q 035828 477 VISACGNLELAFEGKSLHGLALKSLM--GLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEV 554 (781)
Q Consensus 477 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 554 (781)
+-.+|-..+++++++.+|+.+.+... --+..+|++.+..+-+.=.+.---+-+-++....+.+|.++.++|..+++.+
T Consensus 359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~ 438 (638)
T KOG1126|consen 359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHD 438 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHH
Confidence 33444445555555555554443210 1144455555443332111111111111222334568888888888888888
Q ss_pred HHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh
Q 035828 555 RALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGY 632 (781)
Q Consensus 555 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 632 (781)
.|+..|++. .+.| ...+|+.+-.-+...
T Consensus 439 ~Aik~f~RAiQldp~faYayTLlGhE~~~~-------------------------------------------------- 468 (638)
T KOG1126|consen 439 TAIKCFKRAIQLDPRFAYAYTLLGHESIAT-------------------------------------------------- 468 (638)
T ss_pred HHHHHHHHhhccCCccchhhhhcCChhhhh--------------------------------------------------
Confidence 888888887 6777 344554443333333
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHH
Q 035828 633 HGKGWEAIELFHEMCNSGIRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 710 (781)
..+|.|...|..... +.|.. ..|..|...|.+.++++.|.-.|++++ .+.|. ......+...+.+.|+.|+|
T Consensus 469 -ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 469 -EEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred -HHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHH
Confidence 444555555544432 33322 134444445555555555555555543 34444 23444445555555555555
Q ss_pred HHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHH
Q 035828 711 YEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 711 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
+++++++ ...| ++..--..+..+...+++++|.+.+|++.++-|++...+.++|.+|.+.|+.+.|+
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 5555554 2333 22223333334444555555555555555555555555555555555555555554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-07 Score=98.53 Aligned_cols=594 Identities=12% Similarity=0.101 Sum_probs=360.3
Q ss_pred hhhHHHHhhccCChhhHHHHhccCCC--C-----CeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHH
Q 035828 111 CNVFVNMYAKCGDLNSSECTFSGMHC--A-----DTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAA 183 (781)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 183 (781)
+..+...|.+.|-..+|++.+..+.. + +...-. -+..|...-.++.+++.++.|...++.-|-.+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pE-wLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPE-WLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45666777788888888887776642 1 111111 123455556788889999999888888887776666666
Q ss_pred hhccCChhHHHHHHHHHHHh-----------cCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC-------------
Q 035828 184 SACLGELSYGKVIHALGIKL-----------GYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTC------------- 239 (781)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~-----------~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------------- 239 (781)
|...=-.+...++|+..... ++..+ +.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seD--pevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSED--PEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccC--chHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 65554455555666654422 23344 55666788999999999999999876530
Q ss_pred ------C-----CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCC----------CCCCHHHHH-------------HHH
Q 035828 240 ------K-----DVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRS----------VEPDIATVV-------------TLI 285 (781)
Q Consensus 240 ------~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------~~pd~~t~~-------------~ll 285 (781)
| |...|..=+-.|.-.++..+-+++|-+-...+. +.-+..... -+.
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHH
Confidence 1 222222222223333333333333322111100 111111111 122
Q ss_pred HHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH-H--------HHHhhCCCCCee----eH----
Q 035828 286 SLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAE-L--------LFNAIAPMNDLV----SW---- 348 (781)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~--------~~~~~~~~~~~~----~~---- 348 (781)
.-+.+.+++..-..+++.....|.+ |..++|+|...|...++-.+-. + +..+..+++|+. .|
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 3334555666666777777777876 8899999999888765543321 0 011111111111 00
Q ss_pred --HHHHHH-----HHHHHHHhc-ccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCC--CchhHHHHHHHHHHhcCC
Q 035828 349 --NSMISG-----LFKEMLYLC-SQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFS--NNTIGVNALMHMYINCGD 418 (781)
Q Consensus 349 --~~ll~~-----l~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~~~ 418 (781)
..+|.. +++...+.- .+.|...+..++.- .-..-+++.+.....+++ .|+...+.-+.++...+-
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 011110 222111111 12333344444321 111123444555555543 356667777888888888
Q ss_pred HHHHHHHHHhhcCCCCccc-----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHH
Q 035828 419 LVAAFSLLQRISHNSDTSC-----WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSL 493 (781)
Q Consensus 419 ~~~a~~~~~~~~~~~~~~~-----~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (781)
..+-.++++.+.-.+++.+ -|.|+-...+. +..+..+..+++..- -.|+. ...+...+-+++|..+
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdny--Da~~i------a~iai~~~LyEEAF~i 1070 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNY--DAPDI------AEIAIENQLYEEAFAI 1070 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccC--CchhH------HHHHhhhhHHHHHHHH
Confidence 9999999998876665443 34444444443 455666666666443 23442 2334556677888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHH
Q 035828 494 HGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIV 573 (781)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~ 573 (781)
|+.. ..+....+.|+. .-+.++.|.+.-+++.+|. .|+.+..+-.+.|...+|++-|-+. -|...|.
T Consensus 1071 fkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyika---dDps~y~ 1137 (1666)
T KOG0985|consen 1071 FKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIKA---DDPSNYL 1137 (1666)
T ss_pred HHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHhc---CCcHHHH
Confidence 8754 334444555554 4567888988888887765 7999999999999999999988654 2556789
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035828 574 SILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 574 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
-++..+.+.|.+++-.+++.+..+..-.|.+. +.+|-+|++.++..+-.+++ .-|
T Consensus 1138 eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id------------------~eLi~AyAkt~rl~elE~fi-------~gp 1192 (1666)
T KOG0985|consen 1138 EVIDVASRTGKYEDLVKYLLMARKKVREPYID------------------SELIFAYAKTNRLTELEEFI-------AGP 1192 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhhcCccch------------------HHHHHHHHHhchHHHHHHHh-------cCC
Confidence 99999999999999999999999888888764 45777778878776654432 456
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC----------------
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL---------------- 717 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------- 717 (781)
|......+..-|...|.++.|.-+|... ..|..|...+..-|++.-|.+--+++
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhch
Confidence 7777777777777777777776666543 23566666666666666665554443
Q ss_pred ---------C--CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 718 ---------P--IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 718 ---------~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
| +--.+.-...++.-|...|-+++.+.+++..+.+.--+...+..|+-+|.+-
T Consensus 1263 ~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1263 EEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 1 1112334556666677778888888888888888877788888888887754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-10 Score=110.23 Aligned_cols=152 Identities=17% Similarity=0.219 Sum_probs=122.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
+|+-|.+-|...++...|++-+....+ +.| |...|-.|.++|...+.+.-|+-+|++.. ..+|+ +..|..|.+
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~ 440 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGE 440 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHH
Confidence 677788888888889999999988887 555 67788889999988888899999998886 45775 688899999
Q ss_pred HhhhcCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhc-------cCCCCCchHHHHHHHHHhc
Q 035828 700 MLGRSGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFK-------LEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~ 770 (781)
+|.+-++.++|++-++.. .-+.+...+..+...+.+.++.++|.+.+++-++ ..|+...+..-|+.-+.+.
T Consensus 441 CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~ 520 (559)
T KOG1155|consen 441 CYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKM 520 (559)
T ss_pred HHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhh
Confidence 999999999999888876 2233456788888888888999999999888887 3455556666688888888
Q ss_pred CChhhHHh
Q 035828 771 GRWKDAVE 778 (781)
Q Consensus 771 g~~~~A~~ 778 (781)
+++++|-.
T Consensus 521 ~~~~~As~ 528 (559)
T KOG1155|consen 521 KDFDEASY 528 (559)
T ss_pred cchHHHHH
Confidence 99988854
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-11 Score=121.16 Aligned_cols=249 Identities=11% Similarity=0.056 Sum_probs=148.4
Q ss_pred HhcCChHHHHHHhhhcCCC--ChhhHH--HHHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHH
Q 035828 517 GRCRDIKSASTVFESCYNC--NLCTWN--CMISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQ 590 (781)
Q Consensus 517 ~~~g~~~~A~~~~~~~~~~--~~~~~~--~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 590 (781)
.+.|+.+.|...+.++.+. +..... .....+...|+++.|+..+++. +..|+ ...+..+...+.+.|+++.|.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455555555555544421 111111 1134455566666666666666 45553 3344555556666677777777
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCc
Q 035828 591 IHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGL 670 (781)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 670 (781)
++..+.+.+..++... ..+.. .+|..++.......+.+...++++...+. .+.+......+..++...|+
T Consensus 209 ~l~~l~k~~~~~~~~~-~~l~~--------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 209 ILPSMAKAHVGDEEHR-AMLEQ--------QAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHHHHHHcCCCCHHHH-HHHHH--------HHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCC
Confidence 7766666554432211 10000 02333333334445556666666666442 34466677778888888888
Q ss_pred HHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc-hHHHHHHHHHhcCCcHHHHHHHHH
Q 035828 671 VDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG-VWGAMLSACSHHGDTKMGKQVAEL 748 (781)
Q Consensus 671 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 748 (781)
.++|.+.+++..+. .|+.... ++......++.+++++.+++. +..|+.. ....+.+.|...|++++|.+.+++
T Consensus 279 ~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 279 HDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888877643 4444221 233334557888888887766 4455444 566777778888888888888888
Q ss_pred HhccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 749 LFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 749 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
+.+..|++. .+..|+.++.+.|+.++|.++++
T Consensus 354 al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 354 ALKQRPDAY-DYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Confidence 888887754 46678888888888888877653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.1e-13 Score=129.35 Aligned_cols=223 Identities=16% Similarity=0.200 Sum_probs=104.7
Q ss_pred HHHHHHHHhcCChHHHHHHhhhcCCCC---hhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCch
Q 035828 510 NALITMYGRCRDIKSASTVFESCYNCN---LCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVL 585 (781)
Q Consensus 510 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~ 585 (781)
..+.......++.+.|...++.+...+ +..+..++.. ...+++++|.+++.+. ...++...+...+..+...+++
T Consensus 48 ~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 48 RLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred cccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHH
Confidence 333344444555555555555554222 2334444444 4666666666666555 3345555566666667777777
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 035828 586 RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSA 664 (781)
Q Consensus 586 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 664 (781)
+.+..+++.+....-.++ +...|..+...+.+.|+.++|++.+++..+ ..|+ ......++..
T Consensus 127 ~~~~~~l~~~~~~~~~~~---------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 127 DEAEELLEKLEELPAAPD---------------SARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWL 189 (280)
T ss_dssp HHHHHHHHHHHH-T---T----------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHH
Confidence 777777777664222111 233677788888999999999999999998 5775 6678889999
Q ss_pred hcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHH
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMG 742 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 742 (781)
+...|+.+++.++++...+. .+.++..+..+..+|...|++++|+.++++. ...| |+.....+..++...|+.++|
T Consensus 190 li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred HHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999988766 2445678889999999999999999999987 3344 677788999999999999999
Q ss_pred HHHHHHHhcc
Q 035828 743 KQVAELLFKL 752 (781)
Q Consensus 743 ~~~~~~~~~~ 752 (781)
.++.+++++.
T Consensus 268 ~~~~~~~~~~ 277 (280)
T PF13429_consen 268 LRLRRQALRL 277 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999887754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.5e-11 Score=120.88 Aligned_cols=254 Identities=9% Similarity=-0.039 Sum_probs=133.9
Q ss_pred hcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC---CChhhHHHHHHHHHhCCChhHHH
Q 035828 481 CGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN---CNLCTWNCMISAFSQNKAEVRAL 557 (781)
Q Consensus 481 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 557 (781)
....|+.+.+...+....+..-.+...........+...|+++.|...++.+.+ .+...+..+...+...|++++|.
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 344444445444444443322111112222234445555666666655555542 23344555555566666666666
Q ss_pred HHHhhc-CC-CCCHhHHHHH-HHHh---cccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHH
Q 035828 558 ELFRHL-EF-EPNEISIVSI-LSAC---TQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYG 631 (781)
Q Consensus 558 ~~~~~~-~~-~p~~~~~~~l-l~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~ 631 (781)
+++.+. +. .++...+..+ ..+. ...+..+.+...+..+.+....... .++..+..+...+.
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~-------------~~~~l~~~~a~~l~ 274 (409)
T TIGR00540 208 DIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRR-------------HNIALKIALAEHLI 274 (409)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHh-------------CCHHHHHHHHHHHH
Confidence 666555 21 1222222110 0100 1111112222233333322211000 12335666777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-c--chHHHHHHHhhhcC
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSS---VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-T--EHHVCIVDMLGRSG 705 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g 705 (781)
..|++++|.+++++..+. .||... ...........++.+.+.+.+++..+. .|+ + ....++.+.+.+.|
T Consensus 275 ~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHG 349 (409)
T ss_pred HCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcc
Confidence 888888888888888773 344331 111112223346777777777777655 444 2 45667788888888
Q ss_pred ChHHHHHHHHh---CCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 706 KLQEAYEFIKN---LPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 706 ~~~~A~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
++++|.+.|+. ....|+...+.++...+.+.|+.++|.+++++....
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888873 246777777778888788888888888888876543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-08 Score=95.56 Aligned_cols=384 Identities=14% Similarity=0.091 Sum_probs=198.0
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC--CCCcccHHHHHHHHHhCCChhHHHH
Q 035828 186 CLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMT--CKDVVSWNAIIDGFALNGKFEEAFD 263 (781)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~ 263 (781)
+...+..|+.+++..+..-+..+ ..|-..+.+=-..|++..|.++|++-. +|+..+|++.|+.-.+-+.++.|..
T Consensus 119 knk~vNhARNv~dRAvt~lPRVd---qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTILPRVD---QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred hhhhHhHHHHHHHHHHHhcchHH---HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 33444444444444444332222 223333333345688888888887754 7888888888888888888888888
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHh-cC-CCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 035828 264 LLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRR-LL-GYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 264 ~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (781)
+|++..- +.|+..+|..-.+.-.+.|.+..+..+++..++. |- ..+...+.+....=.++..++.|.-+|+-..+
T Consensus 196 IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 196 IYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876 6788888888877777888888888888877754 21 11223333333333445556666665544332
Q ss_pred CCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCCHH
Q 035828 342 MNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSN-NTIGVNALMHMYINCGDLV 420 (781)
Q Consensus 342 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~ 420 (781)
.--+. ....|..+..---+-|+..
T Consensus 273 -------------------------------------------------------~~pk~raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 273 -------------------------------------------------------HIPKGRAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred -------------------------------------------------------hcCcccHHHHHHHHHHHHHHhcchh
Confidence 10000 0122222222222223322
Q ss_pred HHHHHH--------Hhh-cCCC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChh-------hHHHHHHHh--
Q 035828 421 AAFSLL--------QRI-SHNS-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSV-------TLVNVISAC-- 481 (781)
Q Consensus 421 ~a~~~~--------~~~-~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-------~~~~ll~~~-- 481 (781)
...+.. +.+ ..+| |-.+|--.+..--..|+.+...++|++.... ++|-.. .|.-+=-+|
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalye 375 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYE 375 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHH
Confidence 222211 111 1223 5556666677777778888888888887765 555321 111111111
Q ss_pred -cCccchHHHHHHHHHHHHhcCCCChHHHHHHH----HHHHhcCChHHHHHHhhhcC--CCChhhHHHHHHHHHhCCChh
Q 035828 482 -GNLELAFEGKSLHGLALKSLMGLDTRVQNALI----TMYGRCRDIKSASTVFESCY--NCNLCTWNCMISAFSQNKAEV 554 (781)
Q Consensus 482 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 554 (781)
....+++.+.++++..++ -++-...++.-+- ..-.+..++..|.+++.... -|....+...|..-.+.++++
T Consensus 376 Ele~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHH
Confidence 234455555555555554 1222222322221 22234455555555554433 223334444444444555555
Q ss_pred HHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh
Q 035828 555 RALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGY 632 (781)
Q Consensus 555 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 632 (781)
.+..+|++. +..| +..++.-....=...|+.+.|..+|+..+......-+ ...|-+.|+.-..
T Consensus 455 RcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp---------------ellwkaYIdFEi~ 519 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP---------------ELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH---------------HHHHHHhhhhhhh
Confidence 555555555 4444 3334444333334455555555555555443221111 1145555555555
Q ss_pred cCChHHHHHHHHHHHh
Q 035828 633 HGKGWEAIELFHEMCN 648 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~ 648 (781)
.|.++.|..+++++++
T Consensus 520 ~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 520 EGEFEKARALYERLLD 535 (677)
T ss_pred cchHHHHHHHHHHHHH
Confidence 5555555555555554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-10 Score=118.83 Aligned_cols=283 Identities=11% Similarity=0.013 Sum_probs=161.9
Q ss_pred cCCHHHHHHHHHhhcCCC-Cccc-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHH--HHHHhcCccchHHHH
Q 035828 416 CGDLVAAFSLLQRISHNS-DTSC-WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVN--VISACGNLELAFEGK 491 (781)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~-~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~--ll~~~~~~~~~~~a~ 491 (781)
.|+++.|.+.+....... ++.. |-....+..+.|+++.|...|.++.+ ..|+...... ....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666666665542222 1222 22223333566667777777766655 3344432221 123344555555555
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCH--
Q 035828 492 SLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNE-- 569 (781)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~-- 569 (781)
..++.+.+.. +-++.....+...|.+.|++++|.+++..+..... ..|+.
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~---------------------------~~~~~~~ 225 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV---------------------------GDEEHRA 225 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC---------------------------CCHHHHH
Confidence 5555554443 22344445555555555555555555544442211 11110
Q ss_pred ----hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 035828 570 ----ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHE 645 (781)
Q Consensus 570 ----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 645 (781)
.+|..++.......+.+...++++.+.+.- +. ++.....+...+...|+.++|.+++++
T Consensus 226 ~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~----------------~~~~~~~~A~~l~~~g~~~~A~~~L~~ 288 (398)
T PRK10747 226 MLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RH----------------QVALQVAMAEHLIECDDHDTAQQIILD 288 (398)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 011122222222223333333333332211 11 122455667777888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCc
Q 035828 646 MCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKP 723 (781)
Q Consensus 646 m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 723 (781)
..+ ..||.... ++.+....++.+++.+..+...+. .|+ +..+..+.+.+.+.|++++|.+.|++. ...|+.
T Consensus 289 ~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 289 GLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 877 34444222 233444568888888888888765 565 456778888889999999999888876 677888
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 724 GVWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
..+..+...+.+.|+.++|.+.+++...+.
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888888888888999999999998887654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-10 Score=118.93 Aligned_cols=279 Identities=10% Similarity=-0.007 Sum_probs=192.9
Q ss_pred ccchHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHhcCChHHHHHHhhhcCC--CCh--hhHHHHHHHHHhCCChhHHHH
Q 035828 484 LELAFEGKSLHGLALKSLMGLDTRV-QNALITMYGRCRDIKSASTVFESCYN--CNL--CTWNCMISAFSQNKAEVRALE 558 (781)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~A~~ 558 (781)
.|+++.|.+.+....+. .|++.. +-....++.+.|+.+.|.+.+++..+ |+. ...-.....+...|+++.|+.
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444333 233222 23445677888999999999988642 332 233335777889999999999
Q ss_pred HHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCCh
Q 035828 559 LFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKG 636 (781)
Q Consensus 559 ~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 636 (781)
.++++ ...|+ ...+..+...+...|+++.|.+.+..+.+.+..+.......-.. .+..+ ...+..
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~---------a~~~~----l~~~~~ 241 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK---------AEIGL----LDEAMA 241 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH---------HHHHH----HHHHHH
Confidence 99999 67774 45677888899999999999999999999876543321111000 11111 222333
Q ss_pred HHHHHHHHHHHhCC---CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcch---HHHHHHHhhhcCChHHH
Q 035828 637 WEAIELFHEMCNSG---IRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEH---HVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 637 ~~A~~~~~~m~~~g---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A 710 (781)
+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+.+++.++. .|+... .....-.....++.+++
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHH
Confidence 33344555555431 1237778888999999999999999999999865 565431 11122222445788888
Q ss_pred HHHHHhC-CCCCCc---chHHHHHHHHHhcCCcHHHHHHHH--HHhccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 711 YEFIKNL-PIQPKP---GVWGAMLSACSHHGDTKMGKQVAE--LLFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 711 ~~~~~~~-~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
.+.+++. +..|+. ....++.+.+.+.|++++|.+.++ .+.+..|++.. +.+|+.++.+.|+.++|.++|+
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence 8888776 455654 466799999999999999999999 57677776554 6699999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-09 Score=98.96 Aligned_cols=319 Identities=13% Similarity=0.094 Sum_probs=191.4
Q ss_pred HHHHhcCCHHHHHHHHHhhcC-CCCcccHHHHH-HHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcC--ccc
Q 035828 411 HMYINCGDLVAAFSLLQRISH-NSDTSCWNIVI-VACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGN--LEL 486 (781)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li-~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~--~~~ 486 (781)
......-.+++|.++++++.. .|.....|..+ -+|.+..-++-+.++++--.+. .||+.. ..=+.+|.. .=.
T Consensus 159 svhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdSti-A~NLkacn~fRl~n 234 (557)
T KOG3785|consen 159 SVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTI-AKNLKACNLFRLIN 234 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHH-HHHHHHHHHhhhhc
Confidence 333444568899999998744 36666666544 5677888888888888887774 366433 222333322 111
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc-----CChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHh
Q 035828 487 AFEGKSLHGLALKSLMGLDTRVQNALITMYGRC-----RDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
-..|.+-...+.+.+-+. -..+.-.++. ..-+.|++++-.+...-+.+--.++-.|.+.+++.+|..+..
T Consensus 235 gr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred cchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh
Confidence 122222222232222111 1112222221 233456665544332222233345566889999999999999
Q ss_pred hc-CCCCCHhHHHHHHHHhc-----ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC
Q 035828 562 HL-EFEPNEISIVSILSACT-----QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK 635 (781)
Q Consensus 562 ~~-~~~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 635 (781)
++ ...|-......+..+.. ......-|.+.|+..-..+..-|... --.++...+--..+
T Consensus 310 dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIp---------------GRQsmAs~fFL~~q 374 (557)
T KOG3785|consen 310 DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIP---------------GRQSMASYFFLSFQ 374 (557)
T ss_pred hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccccc---------------chHHHHHHHHHHHH
Confidence 98 47776666665555432 22345667788887766665554432 23445555556677
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHH
Q 035828 636 GWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIK 715 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 715 (781)
+++++-.+.....-=...|.+.|| +..+.+..|++.+|.++|-.+... .++-+......|.++|.+.|+.+-|.+++-
T Consensus 375 FddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 375 FDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 888887777777643334444444 667888888888888888776422 222223344567788888888888888887
Q ss_pred hCCCCCCcch-HHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 716 NLPIQPKPGV-WGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 716 ~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
++.-+.+..+ ...+.+.|.+.+++=-|.+.++.+..++|.
T Consensus 453 k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 453 KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 7753333333 444556688888888888888888877765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=123.63 Aligned_cols=157 Identities=16% Similarity=0.191 Sum_probs=138.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVC 696 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 696 (781)
.+.+|.++.++|.-+++++.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+ ++.|. -..|.-
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~rhYnAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPRHYNAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCchhhHHHHh
Confidence 344899999999999999999999999988 777 66799999888999999999999999886 55665 356667
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
+.-.|.+.++++.|.-.|+++ .+.| +.+....+...+.+.|+.++|+++++++..++|.++-.-+..+.++...++++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 888999999999999999988 6677 45567777888889999999999999999999999999999999999999999
Q ss_pred hHHhhc
Q 035828 775 DAVEIG 780 (781)
Q Consensus 775 ~A~~l~ 780 (781)
+|++.+
T Consensus 575 eal~~L 580 (638)
T KOG1126|consen 575 EALQEL 580 (638)
T ss_pred HHHHHH
Confidence 999875
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-09 Score=102.09 Aligned_cols=378 Identities=13% Similarity=0.089 Sum_probs=242.8
Q ss_pred CCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-CCc-ccHHHHHHHHHhCCChHHHHHH
Q 035828 380 SPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN-SDT-SCWNIVIVACTQNGHFQEAIKT 457 (781)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~li~~~~~~~~~~~A~~~ 457 (781)
.++++..|.++|+..+... ..+...+-..+.+-.++..+..|..++++...- |.+ ..|--.+..--..|+...|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4556666777777666544 445555666666666677777777777765322 321 2333344444455677777777
Q ss_pred HHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC---
Q 035828 458 FKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN--- 534 (781)
Q Consensus 458 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 534 (781)
|++-.+ ..|+...+.+.++.-.+...++.|..+++...-. .|+...|--..+.--+.|....|..+++...+
T Consensus 164 ferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 164 FERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 777665 5577777777777766677777777777666543 36666666666666667777777777665441
Q ss_pred C---ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCH---hHHHHHHHHhcccCchHHHHHHH---HHHH-HhCCCCC
Q 035828 535 C---NLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNE---ISIVSILSACTQLGVLRHGKQIH---GHVF-HLGFQEN 603 (781)
Q Consensus 535 ~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~---~~~~-~~~~~~~ 603 (781)
. +...+.++..--.+++.++.|.-+|.-. +.-|.. ..|.....-=-+-|+........ ..+. +..+..+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 1 1123333333334455566666666554 323322 22222222222223332222111 1110 0111111
Q ss_pred chHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHh---cccCcHHH
Q 035828 604 SFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS-------SVISLLSAC---SHSGLVDE 673 (781)
Q Consensus 604 ~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~l~~~~---~~~~~~~~ 673 (781)
+. |-.+|--.++.....|+.+...++|++...+ ++|-.. .|.-+=.+| ....|.+.
T Consensus 319 p~-------------nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 319 PY-------------NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred CC-------------CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 11 2336777778888889999999999999975 666321 232222233 34689999
Q ss_pred HHHHHHHhHHHcCCCCCc-chHH----HHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHH
Q 035828 674 GLQYYNNMLEEYDVRPET-EHHV----CIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAE 747 (781)
Q Consensus 674 a~~~~~~~~~~~~~~p~~-~~~~----~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 747 (781)
+.++++..++ +.|.. .++. ..+....++.++..|.+++..+ |.-|...++...+..-.+.++++....+|+
T Consensus 385 tr~vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999874 57763 4444 3444456889999999999876 889999999999999999999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 748 LLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 748 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.++-+|++-.++...+.+-...|+++.|+.|+
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999999999999999999999875
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-09 Score=100.78 Aligned_cols=324 Identities=10% Similarity=0.067 Sum_probs=211.3
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHH--
Q 035828 398 GFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLV-- 475 (781)
Q Consensus 398 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~-- 475 (781)
+...|...+-..-..+.+.|....|.+.|..... .-+..|.+-+....-..+.+.+ ...... ...|...+.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~-~~P~~W~AWleL~~lit~~e~~----~~l~~~--l~~~~h~M~~~ 231 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVN-RYPWFWSAWLELSELITDIEIL----SILVVG--LPSDMHWMKKF 231 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHh-cCCcchHHHHHHHHhhchHHHH----HHHHhc--CcccchHHHHH
Confidence 4444444444444455667788888887776622 2233344433322222222222 222211 222222111
Q ss_pred HHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhH
Q 035828 476 NVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVR 555 (781)
Q Consensus 476 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 555 (781)
.+..++....+.+++..-...+...|++.+...-+....+.-...+++.|..+|+++...|+.-.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl--------------- 296 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL--------------- 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc---------------
Confidence 13334445556666666666667777766666655555556666777777777777765443200
Q ss_pred HHHHHhhcCCCCCHhHHHHHHHHhcccCch-HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcC
Q 035828 556 ALELFRHLEFEPNEISIVSILSACTQLGVL-RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHG 634 (781)
Q Consensus 556 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 634 (781)
-|..+|+.++-.-.....+ -.|..+ ..-..++|. |..++.+-|.-.+
T Consensus 297 -----------~dmdlySN~LYv~~~~skLs~LA~~v---~~idKyR~E------------------TCCiIaNYYSlr~ 344 (559)
T KOG1155|consen 297 -----------DDMDLYSNVLYVKNDKSKLSYLAQNV---SNIDKYRPE------------------TCCIIANYYSLRS 344 (559)
T ss_pred -----------hhHHHHhHHHHHHhhhHHHHHHHHHH---HHhccCCcc------------------ceeeehhHHHHHH
Confidence 0222333322221110000 001111 111223332 5566777788899
Q ss_pred ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHH
Q 035828 635 KGWEAIELFHEMCNSGIRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYE 712 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 712 (781)
++++|...|++..+ +.|.. ..|+.+.+-|...++...|.+.++.++ .+.|. -..|..|.++|.-.+...=|+-
T Consensus 345 eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 345 EHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred hHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHHhhhhHHHHHhcchHHHHH
Confidence 99999999999998 56654 478888888999999999999999987 45674 6899999999999999999999
Q ss_pred HHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 713 FIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 713 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.|+++ .++| |...|.+|+..|.+.++.++|+.-+.++...+.-+..++..|+.+|.+.++..+|.+.+
T Consensus 420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 420 YFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99988 5666 67789999999999999999999999999999888999999999999999999998754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-09 Score=102.98 Aligned_cols=253 Identities=10% Similarity=0.091 Sum_probs=149.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHhhhcCCCCh---hhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHh
Q 035828 505 DTRVQNALITMYGRCRDIKSASTVFESCYNCNL---CTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSAC 579 (781)
Q Consensus 505 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 579 (781)
+..+.....+-+-..+++.+..++++.+.+.++ ..+..-|.++...|+..+-..+=.++ ...| ...+|-++--.|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 444444445555556666666666666554333 23444455566666666555555555 4444 344555555555
Q ss_pred cccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 035828 580 TQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVI 659 (781)
Q Consensus 580 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 659 (781)
.-.|..++|++.|.+....+..-.+ .|-.....++-.+..++|+..+...-+. ++-...-+.
T Consensus 323 l~i~k~seARry~SKat~lD~~fgp-----------------aWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~L 384 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGP-----------------AWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSL 384 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccH-----------------HHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHH
Confidence 5556677777776665443332222 4666777777777777777766655442 111111223
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCC-----CCC----CcchHHHH
Q 035828 660 SLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLP-----IQP----KPGVWGAM 729 (781)
Q Consensus 660 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p----~~~~~~~l 729 (781)
-+.--|.+.++.+.|.++|.+.. ++-|+ +..+..+.-.....+.+.+|..+|+... +.+ -.++++.+
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL 461 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL 461 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence 33345666677777777777665 44554 4556666666666777777777766541 111 12346666
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
+.++++.+.+++|+..+++++.+.|.++.++..+|.+|...|+++.|++
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 7777777777777777777777777777777777777777777777765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-09 Score=103.73 Aligned_cols=214 Identities=11% Similarity=0.058 Sum_probs=130.5
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCChhh-HHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChH
Q 035828 445 CTQNGHFQEAIKTFKSMTQQQNASPDSVT-LVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIK 523 (781)
Q Consensus 445 ~~~~~~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 523 (781)
+.-.|+.-.|.+-|+..+... |.... |-.+-..|...++.++....|+...+.+.. ++.+|..=..++.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLD---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcC---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 344677778888888877754 32222 555555566666666666666666654432 4444444444455555666
Q ss_pred HHHHHhhhcCCC---ChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCC
Q 035828 524 SASTVFESCYNC---NLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGF 600 (781)
Q Consensus 524 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 600 (781)
+|..-|++...- ++..|-.+-.+.-+.+++++++..|++. ++.=.
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~--------------------------------kkkFP 459 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA--------------------------------KKKFP 459 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHhCC
Confidence 666666655422 2334444444444555555555555554 33211
Q ss_pred CCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------HHHHHHHHHHhcccCcH
Q 035828 601 QENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT---------KSSVISLLSACSHSGLV 671 (781)
Q Consensus 601 ~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---------~~~~~~l~~~~~~~~~~ 671 (781)
. .+..|+-....+...+++++|.+.|+...+ +.|+ ......++-.-. .+++
T Consensus 460 ~-----------------~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~ 519 (606)
T KOG0547|consen 460 N-----------------CPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQW-KEDI 519 (606)
T ss_pred C-----------------CchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhhch-hhhH
Confidence 1 112455566667777888888888887766 4443 112222221212 3789
Q ss_pred HHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 672 DEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 672 ~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
..|.+++.+.. .++|.. ..|..|...-.+.|+.++|+++|++.
T Consensus 520 ~~a~~Ll~KA~---e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 520 NQAENLLRKAI---ELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHH---ccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999886 568874 78999999999999999999999875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-09 Score=99.40 Aligned_cols=251 Identities=12% Similarity=0.019 Sum_probs=161.3
Q ss_pred HHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhH
Q 035828 479 SACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVR 555 (781)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 555 (781)
.+....|+.+.+..++.++.+.--.++....-+..+.....|+.+.|..-++... ..++.......++|.+.|++.+
T Consensus 126 ~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 126 EAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 3334444444444444444443333344444444444455555555544444322 3344455555555555555555
Q ss_pred HHHHHhhc---C-CCC------CHhHHHHHHHHhcccCchHHHHHHHHHHHH-hCCCCCchHHHHHHHhhhcCCChhhHH
Q 035828 556 ALELFRHL---E-FEP------NEISIVSILSACTQLGVLRHGKQIHGHVFH-LGFQENSFISSALLDMYSNCKSNAAWS 624 (781)
Q Consensus 556 A~~~~~~~---~-~~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ 624 (781)
.+.++.++ + ..+ ...++..++.-+...+..+.-...|+...+ ..-.|. .-.
T Consensus 206 ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~------------------l~~ 267 (400)
T COG3071 206 LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPE------------------LVV 267 (400)
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChh------------------HHH
Confidence 55555555 2 111 123556666666555555555555655433 222222 234
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc
Q 035828 625 SMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS 704 (781)
Q Consensus 625 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 704 (781)
+++.-+...|+.++|.++..+..+++..|.- .. .-.+.+-++.+.=.+..++..+.++..| ..+.+|...|.+.
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~ 341 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKN 341 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHh
Confidence 4556677889999999999999888877772 22 2366778888888888888877755555 7788999999999
Q ss_pred CChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 705 GKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 705 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
+.|.+|.+.|+.. +..|+...|..+..++.+.|+++.|.+..++.+...
T Consensus 342 ~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 342 KLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999976 789999999999999999999999999999988543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-06 Score=88.79 Aligned_cols=129 Identities=16% Similarity=0.102 Sum_probs=79.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH---------------HcCCCCC-
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLE---------------EYDVRPE- 690 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------~~~~~p~- 690 (781)
...+...|..+.|.+++--.- .-...|.++++...|.+|.++-++..- ..| +.+
T Consensus 1220 ~~al~~~~~~e~aael~l~f~---------~~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lkneg-kl~e 1289 (1636)
T KOG3616|consen 1220 GGALDEAGCHEAAAELLLLFD---------LSKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEG-KLDE 1289 (1636)
T ss_pred chhhhcccccHHHHHHHHHhh---------hHHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccC-cccc
Confidence 334445555666655543221 122346677777777777776665421 101 111
Q ss_pred --cchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHH-HHhcCCcHHHHHHHHHHhcc-CCCCCchHHHHHH
Q 035828 691 --TEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSA-CSHHGDTKMGKQVAELLFKL-EPENVGYYISLSN 765 (781)
Q Consensus 691 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~ 765 (781)
..-.-.-++.+..+++|++|++.-++-..+|-..-|-++..+ +.+.|+...|..++++--.- +|.+..+|-.+..
T Consensus 1290 li~vdviaaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~e 1368 (1636)
T KOG3616|consen 1290 LIDVDVIAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFE 1368 (1636)
T ss_pred ccchhHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHH
Confidence 011224567889999999999988877777765555555444 45789999999999886543 4777777766543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-08 Score=99.93 Aligned_cols=273 Identities=13% Similarity=0.041 Sum_probs=155.8
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHH
Q 035828 434 DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALI 513 (781)
Q Consensus 434 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 513 (781)
++.....-..-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+.+.- +-...+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 44445555666777888889999998888874 3444444445556666666655555545554432 22455566665
Q ss_pred HHHHhcCChHHHHHHhhhcCCCCh---hhHHHHHHHHHhCCChhHHHHHHhhc-----C-CCCCHhHHHHHHHHhcccCc
Q 035828 514 TMYGRCRDIKSASTVFESCYNCNL---CTWNCMISAFSQNKAEVRALELFRHL-----E-FEPNEISIVSILSACTQLGV 584 (781)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~-----~-~~p~~~~~~~ll~~~~~~~~ 584 (781)
--|.-.|+..+|++.|.+...-|. ..|-.+..+|+-.|..+.|+..+... | ..|.- .
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L----Y---------- 385 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL----Y---------- 385 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH----H----------
Confidence 556666777777777776654333 46777777777777777777766555 2 22211 1
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 035828 585 LRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLS 663 (781)
Q Consensus 585 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~ 663 (781)
+.--|.+.+...-|.++|.+... +.| |+..++-+.-
T Consensus 386 -----------------------------------------lgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgv 422 (611)
T KOG1173|consen 386 -----------------------------------------LGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGV 422 (611)
T ss_pred -----------------------------------------HHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhh
Confidence 11223445555556666555554 334 3344444444
Q ss_pred HhcccCcHHHHHHHHHHhHHHcC-C---CC-CcchHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCcchHHHHHHHHHhc
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYD-V---RP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL-P-IQPKPGVWGAMLSACSHH 736 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~-~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~ 736 (781)
.....+.+.+|..+|+..+.... + ++ ...+++.|..+|-+.+++++|+..+++. . .+.+..++.+++-.+...
T Consensus 423 vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ll 502 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLL 502 (611)
T ss_pred eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 44445566666666665542200 0 01 1234556666666666666666666654 2 233445555555555666
Q ss_pred CCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 737 GDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
|+.+.|...+.+++.+.|++..+-..|+.+
T Consensus 503 gnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 503 GNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred cChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 666666666666666666665555555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-09 Score=110.82 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=115.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC--C--
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCN-----SGIR-PTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP--E-- 690 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~-- 690 (781)
+++.|...|.+.|++++|...+++..+ .|.. |.. .-++.+...|...+++++|..++++..+.+...| +
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 455555556666666666555554432 1222 222 2466666778888999999999998877654222 2
Q ss_pred --cchHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhcc----CC
Q 035828 691 --TEHHVCIVDMLGRSGKLQEAYEFIKNL---------PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKL----EP 754 (781)
Q Consensus 691 --~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p 754 (781)
..++..|...|...|++++|.++++++ +..+. ...++.+...|...++++.|.+++++...+ .|
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 368999999999999999999998876 12333 457888999999999999999999888764 34
Q ss_pred CC---CchHHHHHHHHHhcCChhhHHhhc
Q 035828 755 EN---VGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 755 ~~---~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++ ...|.+|+.+|.+.||+++|.++.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44 456889999999999999999874
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-08 Score=92.81 Aligned_cols=144 Identities=10% Similarity=0.093 Sum_probs=113.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHhc-ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLL-SACS-HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIV 698 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 698 (781)
.|.-|+.+|...|++.+|.-+-...... +..+..+...+. ..|. ...--++|.+++++-+ .+.|+ ......+.
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIA 445 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHH
Confidence 5777888888888888888776655542 333455555442 3332 2334589999999876 56888 46778888
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 699 DMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
..+...|++++++.++++. ...||....+.+.+.+...+.+.+|...|..+++++|++..+...|-.+--.
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 9999999999999999986 6889999999999999999999999999999999999999888777665443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-06 Score=84.96 Aligned_cols=546 Identities=14% Similarity=0.096 Sum_probs=280.6
Q ss_pred cchhhhHHHHhhccCChhhHHHHhccCC-----CCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHH
Q 035828 108 SSLCNVFVNMYAKCGDLNSSECTFSGMH-----CADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVA 182 (781)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 182 (781)
+..|-..+..+.+.|++......|+... ......|...+.-.-..+-++-++.++++..+ .++..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHH
Confidence 5667777888888899998888887652 23566788888888888999999999998865 33334566677
Q ss_pred HhhccCChhHHHHHHHHHHHhcC----CCCCchhHHHHHHHHHHhcCCh---hHHHHHhccCCCC--C--cccHHHHHHH
Q 035828 183 ASACLGELSYGKVIHALGIKLGY----EDSPYVSVTNSLISMYSQCGDI---EAAERAFWGMTCK--D--VVSWNAIIDG 251 (781)
Q Consensus 183 ~~~~~~~~~~a~~~~~~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~--~--~~~~~~li~~ 251 (781)
.++..+++++|.+.+...+.... ....+...|.-+.+..++.-+. -....+++.+..+ | -..|.+|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 77788888887777766653321 1111255566655555554322 2233344444322 2 2457777788
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHH-HhcCCCChHHHHHHHHHHHhcCCHH
Q 035828 252 FALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAI-RRLLGYDLLMMNSLMDFYSKSNSLS 330 (781)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~ 330 (781)
|.+.|.+++|.++|++-... .....-|+.+.++|+.-.....+..+ +... +.+-+-+ .-+++
T Consensus 258 YIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed-------------~~dl~ 320 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEED-------------DVDLE 320 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhh-------------hhhHH
Confidence 88888888888888776652 34444555555555432211111111 0000 0010001 11222
Q ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcc-cCCCcchhhhHHHHHHHHHhcCCC------ch
Q 035828 331 KAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPS-CNSPESLEFGKSIHCWQLKLGFSN------NT 403 (781)
Q Consensus 331 ~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~------~~ 403 (781)
-...-|+.+...++...-+.+++ -|.......++. -...++..+-...+.++.+. +.| -.
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLR------------Qn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLR------------QNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPG 387 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHh------------cCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChh
Confidence 23333333333111111111111 111111111111 12234455555556555542 122 23
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcCCC--Cc----ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-------
Q 035828 404 IGVNALMHMYINCGDLVAAFSLLQRISHNS--DT----SCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPD------- 470 (781)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~------- 470 (781)
..|..+.+.|-..|+++.|..+|++...-| .+ .+|-.-...-.++.+++.|+++.++...-. ..|.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP-~~~~~~~yd~~ 466 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP-TNPELEYYDNS 466 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC-CchhhhhhcCC
Confidence 457778888899999999999999884432 11 235555555667788899998888775421 1111
Q ss_pred ----------hhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC----CCC
Q 035828 471 ----------SVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY----NCN 536 (781)
Q Consensus 471 ----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~ 536 (781)
...|...++.-...|-++..+.+++.+++..+- ++.+.-.....+-...-++++.+++++-. .|+
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 112333334444455666666666666665543 22222222223334445566666666443 334
Q ss_pred h-hhHHHHHHHHHh---CCChhHHHHHHhhc--CCCCCHhHHHHHHHHh--cccCchHHHHHHHHHHHHhCCCCCchHHH
Q 035828 537 L-CTWNCMISAFSQ---NKAEVRALELFRHL--EFEPNEISIVSILSAC--TQLGVLRHGKQIHGHVFHLGFQENSFISS 608 (781)
Q Consensus 537 ~-~~~~~l~~~~~~---~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 608 (781)
+ ..|+.-+.-+.+ ...++.|..+|++. +..|...-+..|+-+- .+.|-...|..++++.... +.+...
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~--- 621 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQR--- 621 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHH---
Confidence 3 245554443332 23466666666666 3555443333333221 2335555566666553322 221111
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH---HhcccCcHHHHHHHHHHhHHHc
Q 035828 609 ALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLS---ACSHSGLVDEGLQYYNNMLEEY 685 (781)
Q Consensus 609 ~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~ 685 (781)
...||+.|.--+..=-......+|++..+ .-||...-...++ .-++.|..+.|..++..--+-
T Consensus 622 -----------l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~- 687 (835)
T KOG2047|consen 622 -----------LDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI- 687 (835)
T ss_pred -----------HHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-
Confidence 01355555444443344444555555555 2444443333322 223456666666666554332
Q ss_pred CCCCC--cchHHHHHHHhhhcCChH
Q 035828 686 DVRPE--TEHHVCIVDMLGRSGKLQ 708 (781)
Q Consensus 686 ~~~p~--~~~~~~l~~~~~~~g~~~ 708 (781)
.+|. ...|.+.=..-.+.|+-+
T Consensus 688 -~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 688 -CDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred -CCCcCChHHHHHHHHHHHhcCCHH
Confidence 2332 345555555556666633
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.2e-07 Score=89.74 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=98.4
Q ss_pred HhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHH
Q 035828 414 INCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSL 493 (781)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (781)
...|+++.|..-|-+. ...--.+.+-....++.+|+.+++.+.++. ....-|..+.+.|+..|+++.|.++
T Consensus 717 ~~~~q~daainhfiea------~~~~kaieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~l 787 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEA------NCLIKAIEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEEL 787 (1636)
T ss_pred HHHHhHHHHHHHHHHh------hhHHHHHHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHH
Confidence 3445555555544433 111223455566778888888888877643 4445667777888888888888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCC--hhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhH
Q 035828 494 HGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCN--LCTWNCMISAFSQNKAEVRALELFRHLEFEPNEIS 571 (781)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~ 571 (781)
|.+. ..++..|.+|.+.|+|++|.++-+++-.|. ++.|-+-..-+-.+|++.+|.++|-.+| .|+.
T Consensus 788 f~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~-- 855 (1636)
T KOG3616|consen 788 FTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK-- 855 (1636)
T ss_pred HHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH--
Confidence 7543 234567788888888888888887776443 3456555566777888888877775552 3332
Q ss_pred HHHHHHHhcccCchHHHHHHHH
Q 035828 572 IVSILSACTQLGVLRHGKQIHG 593 (781)
Q Consensus 572 ~~~ll~~~~~~~~~~~a~~~~~ 593 (781)
.|..|-+.|..+...++.+
T Consensus 856 ---aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 856 ---AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred ---HHHHHHhhCcchHHHHHHH
Confidence 2344555555555555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-08 Score=95.84 Aligned_cols=276 Identities=12% Similarity=0.098 Sum_probs=199.0
Q ss_pred cCCHHHHHHHHHhhcCCCCccc--HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHH
Q 035828 416 CGDLVAAFSLLQRISHNSDTSC--WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSL 493 (781)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (781)
.|++..|+++..+-....+..+ |-.-+.+--..|+.+.+-.++.+..+.. -.++...+....+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5777777777766533333333 3334455566777777777777776642 234444445555556777777777777
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCCh-----------hhHHHHHHHHHhCCChhHHHHHHhh
Q 035828 494 HGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNL-----------CTWNCMISAFSQNKAEVRALELFRH 562 (781)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~ 562 (781)
.+.+.+.+.. .+.+.....++|.+.|++.....++..+.+.+. .+|+.+++-....+..+.-...|++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777666543 455666777888888888888888877775433 3777777777666666666667777
Q ss_pred c--CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHH
Q 035828 563 L--EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAI 640 (781)
Q Consensus 563 ~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 640 (781)
. ..+-+.....+++.-+..+|+.++|.++..+..+.+..|+... .-...+-++.+.-+
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~--------------------~~~~l~~~d~~~l~ 314 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR--------------------LIPRLRPGDPEPLI 314 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH--------------------HHhhcCCCCchHHH
Confidence 7 3555666667788888999999999999999999888877321 11235667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 641 ELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 641 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
+..+...+. .+-++..+.+|.+-|.+.+.|.+|.+.|+..+ ...|+..+|..+.++|.+.|+..+|.+..++.
T Consensus 315 k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 315 KAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 777776653 33344788889999999999999999999876 55999999999999999999999999988765
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=82.62 Aligned_cols=50 Identities=40% Similarity=0.622 Sum_probs=44.5
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 035828 240 KDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCAD 290 (781)
Q Consensus 240 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 290 (781)
||+.+||++|.+|++.|++++|+++|++|.+.| +.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcC
Confidence 678889999999999999999999999999888 99999999999988874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.3e-07 Score=93.19 Aligned_cols=374 Identities=15% Similarity=0.138 Sum_probs=210.4
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh-hhH
Q 035828 398 GFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN--SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS-VTL 474 (781)
Q Consensus 398 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~ 474 (781)
.+.-+..+|..|.-++...|+++.+.+.|++...- .....|..+...+...|....|+.+++.-.... -.|+. ..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~-~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS-EQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc-cCCCcchHH
Confidence 34456667777777777777777777777766332 244557777777777777777777777655533 12332 223
Q ss_pred HHHHHHh-cCccchHHHHHHHHHHHHh--cC--CCChHHHHHHHHHHHhc-----------CChHHHHHHhhhcCCC---
Q 035828 475 VNVISAC-GNLELAFEGKSLHGLALKS--LM--GLDTRVQNALITMYGRC-----------RDIKSASTVFESCYNC--- 535 (781)
Q Consensus 475 ~~ll~~~-~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~--- 535 (781)
...-+.| .+.+.++++..+-.++++. +. ...+..+..+--+|... ....++...+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2222333 3445556665555555441 11 11222232222223211 1123445555555322
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHhhc-CC--CCCHhHHHHHHHHhcccCchHHHHHHHHHHHH-hCCCCCc-------
Q 035828 536 NLCTWNCMISAFSQNKAEVRALELFRHL-EF--EPNEISIVSILSACTQLGVLRHGKQIHGHVFH-LGFQENS------- 604 (781)
Q Consensus 536 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~------- 604 (781)
|+.+---+.--|+..++.+.|++..++. .+ .-+...+..|.-.+...+++.+|..+.+.... .|.....
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 2211111222355566677777776666 33 33445555555566666667777666655332 2221000
Q ss_pred -----------hHHHHHHHhhhcC---------------------------CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 035828 605 -----------FISSALLDMYSNC---------------------------KSNAAWSSMISAYGYHGKGWEAIELFHEM 646 (781)
Q Consensus 605 -----------~~~~~l~~~~~~~---------------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m 646 (781)
.+...++..+-.. ....++..+..... -+...+..-.. |
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccccc-c
Confidence 0000111111100 00001111111110 00000000000 1
Q ss_pred HhCCCCCCH--------HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 647 CNSGIRPTK--------SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 647 ~~~g~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
...-+.|.. ..|......+.+.++.++|...+.+.. ++.|- ...|......+...|.+++|.+.|...
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 111122221 134455567778889999998888875 44554 578888889999999999999988766
Q ss_pred -CCCCC-cchHHHHHHHHHhcCCcHHHHH--HHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 718 -PIQPK-PGVWGAMLSACSHHGDTKMGKQ--VAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 718 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
.+.|+ +.+..++...+...|+...|.. ++..+.+++|.++.+|+.||.++.++|+.++|.+
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 56775 5578888888999999999999 9999999999999999999999999999999865
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.8e-10 Score=106.43 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=102.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 700 (781)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+. ...| ....+..+...
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-cccccchHHHHHHHHH
Confidence 34455555666677777777777666532 223445566666666777777777777776643 1122 23456666777
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 701 LGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
+.+.|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.++...|+.++|.+
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 77777777777777665 3333 344566677777777778888777777777777777777777777777777777766
Q ss_pred h
Q 035828 779 I 779 (781)
Q Consensus 779 l 779 (781)
+
T Consensus 225 ~ 225 (234)
T TIGR02521 225 Y 225 (234)
T ss_pred H
Confidence 5
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-11 Score=81.92 Aligned_cols=50 Identities=30% Similarity=0.449 Sum_probs=46.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc
Q 035828 618 KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH 667 (781)
Q Consensus 618 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 667 (781)
||+.+||++|.+|++.|++++|.++|++|++.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56779999999999999999999999999999999999999999999975
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-06 Score=82.79 Aligned_cols=530 Identities=13% Similarity=0.113 Sum_probs=287.8
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 035828 211 VSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCAD 290 (781)
Q Consensus 211 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 290 (781)
...|-.+=++ ++.++..++.|+ ..|-..+..+..+|++......|+.....-.+.--...+...+.....
T Consensus 81 ~~~~~~vn~c------~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~ 150 (835)
T KOG2047|consen 81 DPAYESVNNC------FERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVES 150 (835)
T ss_pred ChHHHHHHHH------HHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHh
Confidence 4455544433 345566666665 356666677777888888888887776643344445566777777777
Q ss_pred ccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchh
Q 035828 291 SLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFST 370 (781)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~ 370 (781)
.+-++.+.++++.-.+- ++..-+-.|..++..+++++|.+.+..+.... .... ...+.+...
T Consensus 151 ~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d-~f~s-------------k~gkSn~ql 212 (835)
T KOG2047|consen 151 HGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQD-EFVS-------------KKGKSNHQL 212 (835)
T ss_pred CCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCch-hhhh-------------hcccchhhH
Confidence 77777777777776654 33445667777888888888888887776511 0000 000111111
Q ss_pred hhhhhcccCCCcchhhhHHHHHHHHHhcC--CCc--hhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-CCcccHHHHHHHH
Q 035828 371 LLAILPSCNSPESLEFGKSIHCWQLKLGF--SNN--TIGVNALMHMYINCGDLVAAFSLLQRISHN-SDTSCWNIVIVAC 445 (781)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~li~~~ 445 (781)
+..+....++..+.-.... .+.+.+.|+ -+| ...+++|.+.|.+.|.++.|.++|++.... -.+.-|..+..+|
T Consensus 213 w~elcdlis~~p~~~~sln-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Y 291 (835)
T KOG2047|consen 213 WLELCDLISQNPDKVQSLN-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAY 291 (835)
T ss_pred HHHHHHHHHhCcchhcccC-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHH
Confidence 1111111111111111111 112222233 233 356889999999999999999999876444 3444455444444
Q ss_pred HhC----------------C------ChHHHHHHHHHHHHcCCCCCCh----------hhHHHHHHHhcCccchHHHHHH
Q 035828 446 TQN----------------G------HFQEAIKTFKSMTQQQNASPDS----------VTLVNVISACGNLELAFEGKSL 493 (781)
Q Consensus 446 ~~~----------------~------~~~~A~~~~~~m~~~~~~~p~~----------~~~~~ll~~~~~~~~~~~a~~~ 493 (781)
+.- + +.+-.+..|+.+...++.-.|. .++..-+ -...|+..+....
T Consensus 292 a~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~t 369 (835)
T KOG2047|consen 292 AQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINT 369 (835)
T ss_pred HHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHH
Confidence 321 1 1233344445444433221111 1121111 1234556666666
Q ss_pred HHHHHHhc-----CCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCCh-------hhHHHHHHHHHhCCChhHHHHHHh
Q 035828 494 HGLALKSL-----MGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNL-------CTWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 494 ~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
+.++++.- +..-...|..+.+.|-..|+++.|+.+|+....-+- .+|..-...-.++.+++.|+++.+
T Consensus 370 yteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 370 YTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 77665421 122345678889999999999999999998764332 356666666678899999999998
Q ss_pred hcC---CCCC-----------------HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHH--HHH--------
Q 035828 562 HLE---FEPN-----------------EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISS--ALL-------- 611 (781)
Q Consensus 562 ~~~---~~p~-----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~-------- 611 (781)
+.- -.|. ...+...++.-...|-++....+++.+++..+.....+-| .++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHH
Confidence 871 1111 1123334444455678888899999988876654333222 111
Q ss_pred --HhhhcC------CChh-hHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcccCcHHHHHHH
Q 035828 612 --DMYSNC------KSNA-AWSSMISAYGY---HGKGWEAIELFHEMCNSGIRPTKSSVISLLSA--CSHSGLVDEGLQY 677 (781)
Q Consensus 612 --~~~~~~------~~~~-~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~~~~~~a~~~ 677 (781)
.+|-+. |++. .|+..+.-+.+ ..+.+.|..+|++..+ |++|...-+-.|+.+ -.+.|-...|+.+
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 222222 2222 34444443332 2345666667766666 555544322222222 1234566666666
Q ss_pred HHHhHHHcCCCCC--cchHHHHHHHhhh-------cCChHHHHHHHHhCCCCCCcc---hHHHHHHHHHhcCCcHHHHHH
Q 035828 678 YNNMLEEYDVRPE--TEHHVCIVDMLGR-------SGKLQEAYEFIKNLPIQPKPG---VWGAMLSACSHHGDTKMGKQV 745 (781)
Q Consensus 678 ~~~~~~~~~~~p~--~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~ 745 (781)
+++... ++++. ...|+..|.--.. .+=+++|++.+ |+.. ..-.+...-.+.|..+.|..+
T Consensus 609 yerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L------p~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 609 YERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL------PDSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC------ChHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 666532 34443 2444444432111 11233333332 3322 233334444567778888888
Q ss_pred HHHHhccCCC--CCchHHHHHHHHHhcCChhhHHhhc
Q 035828 746 AELLFKLEPE--NVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 746 ~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|.-..+..|+ ++..|...-.--.+.||-+.-.+++
T Consensus 681 ya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 681 YAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7777777643 4555666666677777765555544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-08 Score=95.18 Aligned_cols=342 Identities=13% Similarity=0.134 Sum_probs=194.3
Q ss_pred HhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHH
Q 035828 414 INCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSL 493 (781)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (781)
.+.+..|+|...++.. .+-+..+...-.+.+.+.|++++|+.+|+.+.+.+--.-+...-..++.+-.. ...
T Consensus 90 Yrlnk~Dealk~~~~~-~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGL-DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV 161 (652)
T ss_pred HHcccHHHHHHHHhcc-cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH
Confidence 3678888888888844 33344455556677788889999999999887764111111112222221100 001
Q ss_pred HHHHHHhcCCCChHHHHHHH---HHHHhcCChHHHHHHhhhc--------CCCC-----h-----hhHHHHHHHHHhCCC
Q 035828 494 HGLALKSLMGLDTRVQNALI---TMYGRCRDIKSASTVFESC--------YNCN-----L-----CTWNCMISAFSQNKA 552 (781)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~--------~~~~-----~-----~~~~~l~~~~~~~~~ 552 (781)
..+......| ..+|..+. -.+...|++.+|+++++.. ...| + ..--.+.-.+...|+
T Consensus 162 -~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 -QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred -HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1122222222 22343333 3455678899998888765 2111 1 122344556778899
Q ss_pred hhHHHHHHhhc-C-CCCCHhHHHHHHH---HhcccCchHH--HHHH-----------HHHHHHhCCCCCchHHHHHHHhh
Q 035828 553 EVRALELFRHL-E-FEPNEISIVSILS---ACTQLGVLRH--GKQI-----------HGHVFHLGFQENSFISSALLDMY 614 (781)
Q Consensus 553 ~~~A~~~~~~~-~-~~p~~~~~~~ll~---~~~~~~~~~~--a~~~-----------~~~~~~~~~~~~~~~~~~l~~~~ 614 (781)
.++|.++|... . ..+|......... +...-.++-. +... +..+..........--+.++.+|
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888 3 4455433222222 1211111111 1111 11111111111222223445554
Q ss_pred hcC--------------CChhhHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhcccCcHHHHHH
Q 035828 615 SNC--------------KSNAAWSSMISAY--GYHGKGWEAIELFHEMCNSGIRPT--KSSVISLLSACSHSGLVDEGLQ 676 (781)
Q Consensus 615 ~~~--------------~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~ 676 (781)
.+- -....+.+++... ++...+.+|.+++...-+. .|. .......+......|+++.|.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 443 1122333333332 2233577788888877664 343 3455555666778999999999
Q ss_pred HHH--------HhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-----CCCCCcc----hHHHHHHHHHhcCCc
Q 035828 677 YYN--------NMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-----PIQPKPG----VWGAMLSACSHHGDT 739 (781)
Q Consensus 677 ~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~~~~g~~ 739 (781)
++. .+.+. .-.+.+...+...+.+.++-+-|..++.++ ...+... .+...+..-.+.|+-
T Consensus 398 il~~~~~~~~ss~~~~---~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEA---KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhhhh---ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 999 44322 223456677888888888888888777665 1233323 334444444568999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 740 KMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
++|...++++++.+|++......+..+|..-
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-08 Score=92.38 Aligned_cols=261 Identities=13% Similarity=0.112 Sum_probs=121.3
Q ss_pred CCHHHHHHHHHhhcCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChh--hHHHHHHHhcCccchHHHH
Q 035828 417 GDLVAAFSLLQRISHNSDTSC---WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSV--TLVNVISACGNLELAFEGK 491 (781)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~ 491 (781)
++.++|.++|-+| .+.|+.+ --+|-+.|.+.|..+.|+++-+.+.++....-+.. ..-.|-.-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~-l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEM-LQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHH-HhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4455555555555 2222222 23344555555666666666555554320100000 1111222244455555555
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCCh--------hhHHHHHHHHHhCCChhHHHHHHhhc
Q 035828 492 SLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNL--------CTWNCMISAFSQNKAEVRALELFRHL 563 (781)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~ 563 (781)
.+|..+.+.+. .-......|+..|-...+|++|+++-+++..-+. ..|..+...+....+.+.|.+++.+.
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 55555554331 1233445566677777777777766665442222 23444555555566667777777666
Q ss_pred -CCCCCHhHHHHHH-HHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHH
Q 035828 564 -EFEPNEISIVSIL-SACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIE 641 (781)
Q Consensus 564 -~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 641 (781)
...|+.+--+.++ ......|+++.|.+.++.+.+.+..--.. +...|..+|...|+.++.+.
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e----------------vl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE----------------VLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH----------------HHHHHHHHHHHhCCHHHHHH
Confidence 5555444333332 23344555555555555555544332222 23334444555566666555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHH
Q 035828 642 LFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDM 700 (781)
Q Consensus 642 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 700 (781)
++.++.+.. +....-..+..--....-.+.|..++.+-+++ +|+...+..|++.
T Consensus 271 fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~ 324 (389)
T COG2956 271 FLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHh
Confidence 555555532 22222222222222222234444444443333 5555555555544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-07 Score=92.18 Aligned_cols=443 Identities=13% Similarity=0.085 Sum_probs=263.2
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHH
Q 035828 254 LNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAE 333 (781)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 333 (781)
..+++...++..+.+.+.. .--..|....--.+...|+.++|....+.-.+..+. +.+.|..+--.+....++++|.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHH
Confidence 5667777777777777632 222234433333456678888888877776665443 4566666666666778888888
Q ss_pred HHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHH
Q 035828 334 LLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMY 413 (781)
Q Consensus 334 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 413 (781)
+.|..... +. +-|...+..+--.-
T Consensus 96 Kcy~nAl~----------------------~~----------------------------------~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 96 KCYRNALK----------------------IE----------------------------------KDNLQILRDLSLLQ 119 (700)
T ss_pred HHHHHHHh----------------------cC----------------------------------CCcHHHHHHHHHHH
Confidence 88887654 11 11223333333333
Q ss_pred HhcCCHHHHHHHHHhh-cCCC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHH------HhcCcc
Q 035828 414 INCGDLVAAFSLLQRI-SHNS-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVIS------ACGNLE 485 (781)
Q Consensus 414 ~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~------~~~~~~ 485 (781)
++.++++........+ +..| ....|..+..++.-.|+...|..++++..+..+..|+...|.-... .....|
T Consensus 120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g 199 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG 199 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 4444444444333332 2234 3456888888888899999999999998877534566665543322 234566
Q ss_pred chHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCC--ChhhHH-HHHHHHHhCCChhHHH-HHHh
Q 035828 486 LAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNC--NLCTWN-CMISAFSQNKAEVRAL-ELFR 561 (781)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~-~l~~~~~~~~~~~~A~-~~~~ 561 (781)
..+.|.+.+......-+ -....-..-...+.+.+++++|..++..+..+ |-..|. .+..++.+-.+..+++ .+|.
T Consensus 200 ~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~ 278 (700)
T KOG1156|consen 200 SLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYA 278 (700)
T ss_pred cHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66666666554433211 11122233455677889999999999888744 334444 3444444444444555 6676
Q ss_pred hc-CCCCCHhHHHHH-HHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHH
Q 035828 562 HL-EFEPNEISIVSI-LSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEA 639 (781)
Q Consensus 562 ~~-~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A 639 (781)
.. +..|.......+ ++......-.+....++..+.+.|+++-.. .+...|-.-.+.+-.
T Consensus 279 ~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~-------------------dl~SLyk~p~k~~~l 339 (700)
T KOG1156|consen 279 ILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK-------------------DLRSLYKDPEKVAFL 339 (700)
T ss_pred HHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh-------------------hhHHHHhchhHhHHH
Confidence 66 233322111111 111222223344556667777777765332 233333221111111
Q ss_pred HHHHHHH----HhCC----------CCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhh
Q 035828 640 IELFHEM----CNSG----------IRPTKS--SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLG 702 (781)
Q Consensus 640 ~~~~~~m----~~~g----------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 702 (781)
.++.-.+ ...| -+|... ++..++..+-+.|+++.|..+++..+ +-.|+ +..|..-.+.+.
T Consensus 340 e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~k 416 (700)
T KOG1156|consen 340 EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFK 416 (700)
T ss_pred HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHH
Confidence 1111111 1111 134443 56667788889999999999999987 45888 578888899999
Q ss_pred hcCChHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC-------chHHHH--HHHHHhcC
Q 035828 703 RSGKLQEAYEFIKNLP--IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV-------GYYISL--SNMYVALG 771 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l--~~~~~~~g 771 (781)
..|++++|..++++.. -.||...-...+.-..++.+.++|..++.+..+.+.+-. -.|+.+ |.+|.++|
T Consensus 417 H~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~ 496 (700)
T KOG1156|consen 417 HAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQN 496 (700)
T ss_pred hcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHH
Confidence 9999999999999883 345544444666667789999999999988776654211 123332 45788999
Q ss_pred ChhhHHh
Q 035828 772 RWKDAVE 778 (781)
Q Consensus 772 ~~~~A~~ 778 (781)
++-+|++
T Consensus 497 k~g~ALK 503 (700)
T KOG1156|consen 497 KLGLALK 503 (700)
T ss_pred HHHHHHH
Confidence 9987764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-08 Score=91.56 Aligned_cols=281 Identities=10% Similarity=0.092 Sum_probs=174.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCChHH
Q 035828 448 NGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLD---TRVQNALITMYGRCRDIKS 524 (781)
Q Consensus 448 ~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 524 (781)
+++.++|..+|-+|.+.. +-+..+-.+|-+.+.+.|.+|.|..++..+.++.--+. ......|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 678999999999998842 22233444556667888999999999988876532221 2233455666778888888
Q ss_pred HHHHhhhcCCCCh---hhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHh------HHHHHHHHhcccCchHHHHHHHHH
Q 035828 525 ASTVFESCYNCNL---CTWNCMISAFSQNKAEVRALELFRHL-EFEPNEI------SIVSILSACTQLGVLRHGKQIHGH 594 (781)
Q Consensus 525 A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~ 594 (781)
|..+|..+.+.+. .....|+..|-...++++|++.-+++ ...|... -|.-|........+++.|...+++
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888887775433 46677788888888888888887776 3333222 233344444455667777777766
Q ss_pred HHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHH
Q 035828 595 VFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEG 674 (781)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 674 (781)
..+.+.+- +.+=-.+.+.....|+++.|.+.|+...+.+..--+.+...|..+|...|+.+++
T Consensus 206 Alqa~~~c-----------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 206 ALQADKKC-----------------VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHhhCccc-----------------eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 66554432 1223344455667777777777777777754333344667777777777777777
Q ss_pred HHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHH-HhCCCCCCcchHHHHHHHHHh---cCCcHHHHHHHHHHh
Q 035828 675 LQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFI-KNLPIQPKPGVWGAMLSACSH---HGDTKMGKQVAELLF 750 (781)
Q Consensus 675 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 750 (781)
...+..+.+. .+....-..+.+......=.+.|...+ +.+.-+|+...+..+++.... .|........+..+.
T Consensus 269 ~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 269 LNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 7777776543 455554555555444444445555544 344667777777777665433 223344444444444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-09 Score=93.58 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=136.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
+...+.-+|...|+...|..-+++.++ ..|+. .+|..+...|.+.|+.+.|.+.|++.+ .+.|+ ..+.++...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 345566789999999999999999998 56754 589999999999999999999999987 45887 589999999
Q ss_pred HhhhcCChHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 700 MLGRSGKLQEAYEFIKNLPIQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
.+|..|++++|...|+++-..|. ..+|..++....+.|+.+.|...+++.++++|+.+.....++......|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998854553 45788888888899999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 035828 776 AVEIG 780 (781)
Q Consensus 776 A~~l~ 780 (781)
|...+
T Consensus 192 Ar~~~ 196 (250)
T COG3063 192 ARLYL 196 (250)
T ss_pred HHHHH
Confidence 87643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-06 Score=86.86 Aligned_cols=270 Identities=9% Similarity=-0.045 Sum_probs=158.0
Q ss_pred HHhhhhcCCCcchhhHHHH--HHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhc--
Q 035828 28 ALFYETCNKDVVTWNAMIT--ACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAG-- 103 (781)
Q Consensus 28 ~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 103 (781)
+-|-....=|..|-.+|++ -|...|+.+.|.+-.+..+ +...|..+.+-|.+.++++-|.-.+-.|....
T Consensus 716 rdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 716 RDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred HHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 3333334446667777775 4667888888877766543 45678888888888888888887777775321
Q ss_pred ------CCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchH
Q 035828 104 ------MIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSL 177 (781)
Q Consensus 104 ------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 177 (781)
.+.+...-....-.-...|.+++|+.++..-++ |..|=..|-..|.+++|+++-+.--+- .-..||
T Consensus 790 RAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Ty 861 (1416)
T KOG3617|consen 790 RALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTY 861 (1416)
T ss_pred HHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhH
Confidence 111112212222223356777777777765543 344445556677777777776543221 123455
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCC
Q 035828 178 SSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGK 257 (781)
Q Consensus 178 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 257 (781)
..-..-+...+|++.|...++..-... ..++..|. .++.......+.+.. ...|.--...+-..|+
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~ha------fev~rmL~------e~p~~~e~Yv~~~~d--~~L~~WWgqYlES~Ge 927 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHA------FEVFRMLK------EYPKQIEQYVRRKRD--ESLYSWWGQYLESVGE 927 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChH------HHHHHHHH------hChHHHHHHHHhccc--hHHHHHHHHHHhcccc
Confidence 555555555666666666555321111 11111111 122222333333332 2334334444456788
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 035828 258 FEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFN 337 (781)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 337 (781)
.+.|+.+|...+. |-.+++..|-.|..++|.++-++- -|....-.|.+.|-..|++.+|..+|-
T Consensus 928 mdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 928 MDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8888888877655 345666677788888888776552 255566678888888899999988887
Q ss_pred hhCC
Q 035828 338 AIAP 341 (781)
Q Consensus 338 ~~~~ 341 (781)
+...
T Consensus 992 rAqa 995 (1416)
T KOG3617|consen 992 RAQA 995 (1416)
T ss_pred HHHH
Confidence 6644
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.7e-06 Score=76.05 Aligned_cols=190 Identities=13% Similarity=0.069 Sum_probs=96.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCC-CCcccHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCCCCChhh-HHHHHH
Q 035828 409 LMHMYINCGDLVAAFSLLQRISHN-SDTSCWNIVIVACTQNGH-------FQEAIKTFKSMTQQQNASPDSVT-LVNVIS 479 (781)
Q Consensus 409 li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~ 479 (781)
|+-.|.+.+++++|..+.+++.+. |-......++ ++..|+ ..-|...|+-.-+++ ..-|... -.++..
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa-~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESA-LECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccc-cccccccchHHHHH
Confidence 444577888888888888877332 2222222222 222222 334444444443333 3222211 112222
Q ss_pred HhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCC---hhhHH-HHHHHHHhCCChhH
Q 035828 480 ACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCN---LCTWN-CMISAFSQNKAEVR 555 (781)
Q Consensus 480 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~l~~~~~~~~~~~~ 555 (781)
.+--..+++++...++.+...-..-|...+| +..+++..|...+|.++|-.+..++ -.+|. .+.++|.+.+.++.
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 3333345566666666555554444444443 5666677777777777776665443 23443 34456667777777
Q ss_pred HHHHHhhcCCCCCHhHHHHH-HHHhcccCchHHHHHHHHHHHHhCCCC
Q 035828 556 ALELFRHLEFEPNEISIVSI-LSACTQLGVLRHGKQIHGHVFHLGFQE 602 (781)
Q Consensus 556 A~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~ 602 (781)
|-+++-+++-..+..++.-+ ..-|.+++.+--|.+.|+++...+..|
T Consensus 447 AW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 447 AWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 76666555333333333333 234556666555555565555544433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-08 Score=96.86 Aligned_cols=196 Identities=15% Similarity=0.177 Sum_probs=129.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhc
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSN 616 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 616 (781)
.+..+...+...|++++|.+.+++. ...|+ ...+..+...+...|+++.|...++...+.....
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------------- 98 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-------------- 98 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------------
Confidence 3444445555555555555555555 33343 3444455555666666666666666665543221
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchH
Q 035828 617 CKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHH 694 (781)
Q Consensus 617 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 694 (781)
...+..+...+...|++++|.+.+++..+....| ....+..+...+...|++++|...+++..+. .|+ ...+
T Consensus 99 ---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~ 172 (234)
T TIGR02521 99 ---GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESL 172 (234)
T ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHH
Confidence 1145556667778888888888888887643222 3346666777788888999999999888754 454 4677
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCC
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 754 (781)
..+...+...|++++|.+.+++. ...| +...+...+..+...|+.+.|..+.+.+.+..|
T Consensus 173 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 173 LELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 78888888899999998888876 2223 444556666777788899999888888766544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-09 Score=96.81 Aligned_cols=242 Identities=12% Similarity=0.084 Sum_probs=169.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHhhhcC--CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHH-HHHHhc
Q 035828 505 DTRVQNALITMYGRCRDIKSASTVFESCY--NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVS-ILSACT 580 (781)
Q Consensus 505 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~-ll~~~~ 580 (781)
|..--+.+.++|.+.|.+.+|.+.|+... .+.+.+|-.+-+.|.+-++++.|+.++.+- +..|-.+||.. ..+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 33444678889999999999999888665 456678888899999999999999999888 77887777654 344556
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 035828 581 QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVIS 660 (781)
Q Consensus 581 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 660 (781)
..++.++|.++++...+.... ++.+...+..+|--.++.+-|+..|.++.+.|+. +...|+.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-----------------nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~N 363 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-----------------NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCN 363 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-----------------cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhh
Confidence 667777788887777664321 1223333445556667788888888888877754 4456777
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHH 736 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 736 (781)
+.-+|.-.+++|-++..|++.+.. --.|+ ..+|.++.......|++.-|.+-|+-+ ...| ....++.+.-...+.
T Consensus 364 igLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 364 IGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred HHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 776777777888888888777654 33454 366777777777777777777777654 2233 345667666666677
Q ss_pred CCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 737 GDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
|+.++|..++..+....|+..+..++++.
T Consensus 443 G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 443 GDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred CchHHHHHHHHHhhhhCccccccccceeE
Confidence 78888888887777777776665555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-09 Score=95.91 Aligned_cols=220 Identities=11% Similarity=0.055 Sum_probs=182.0
Q ss_pred HHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCC
Q 035828 541 NCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKS 619 (781)
Q Consensus 541 ~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 619 (781)
+.+.++|.+.|.+.+|...|+.. ...|-..||..|-.+|.+..+.+.|..++.+-.+. .|..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT------------- 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVT------------- 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhh-------------
Confidence 56889999999999999999988 78888899999999999999999999998876552 232222
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVD 699 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 699 (781)
...-+.+.+...++.++|.++|+...+. ...+......+...|.-.++++-|+.++.++++- |+ -++..|.++.-
T Consensus 292 --~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigL 366 (478)
T KOG1129|consen 292 --YLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGL 366 (478)
T ss_pred --hhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHH
Confidence 3444667778889999999999999874 1234445555556677788999999999999876 43 35678999999
Q ss_pred HhhhcCChHHHHHHHHhCC---CCC--CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 700 MLGRSGKLQEAYEFIKNLP---IQP--KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
+|.-.+++|-++.-|+++. -.| ...+|-.+.......||+..|.+-++-++..+|++..++++|+-+-.+.|+.+
T Consensus 367 CC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 367 CCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchH
Confidence 9999999999988877661 223 34579899888899999999999999999999999999999999999999999
Q ss_pred hHHhhc
Q 035828 775 DAVEIG 780 (781)
Q Consensus 775 ~A~~l~ 780 (781)
+|+.++
T Consensus 447 ~Arsll 452 (478)
T KOG1129|consen 447 GARSLL 452 (478)
T ss_pred HHHHHH
Confidence 999876
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-05 Score=81.52 Aligned_cols=229 Identities=12% Similarity=0.128 Sum_probs=140.6
Q ss_pred HHhhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhc-CC--------CCChhhHHHHHHHHhcc
Q 035828 16 AYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEE-GI--------RFDSTTLLIIVSALTQM 86 (781)
Q Consensus 16 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~--------~~~~~~~~~ll~~~~~~ 86 (781)
.|.--|+.+.|.+-.+-+. +-..|..|.+.|.+.++.+-|.-.+..|... |. .|+ .+=..+.-.....
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 3556678888777655443 3457999999999999999998888887642 11 122 2222222233467
Q ss_pred CcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCC-eeehHHHHHHHhhCCChhhHHHHHHHH
Q 035828 87 NCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCAD-TVSWNTIMSGCLHNNYPEKCLLYFREM 165 (781)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 165 (781)
|.+++|..++.+-++. ..|=..|...|.+++|.++-+.-.+-. ..||..-..-+-..++++.|++.|++-
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 8888898888887764 345566778899999999876543322 235666666666778888888888754
Q ss_pred hhcC-------------------CCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCC
Q 035828 166 GWSG-------------------EQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGD 226 (781)
Q Consensus 166 ~~~g-------------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 226 (781)
.... -.-|...|...-+-+...|+.+.|..++.. ..-|-+++...|-.|+
T Consensus 885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~-----------A~D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS-----------AKDYFSMVRIKCIQGK 953 (1416)
T ss_pred CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH-----------hhhhhhheeeEeeccC
Confidence 2211 011223333344444455555555555543 2234445555555666
Q ss_pred hhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 035828 227 IEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQ 269 (781)
Q Consensus 227 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (781)
.++|-++-++- .|..+.-.+.+.|-..|++.+|...|.+.+
T Consensus 954 ~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 954 TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66666655443 244555566677777777777777776654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=108.79 Aligned_cols=202 Identities=14% Similarity=0.099 Sum_probs=148.0
Q ss_pred hhHHHHHHhhc-CCCCCHh-HHHHHHHHhc---------ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChh
Q 035828 553 EVRALELFRHL-EFEPNEI-SIVSILSACT---------QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNA 621 (781)
Q Consensus 553 ~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 621 (781)
.++|+.+|++. ...|+.. .+..+..++. ..+++++|...+++..+.+.. +..
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-----------------~~~ 339 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-----------------NPQ 339 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-----------------CHH
Confidence 45677777777 6666543 2322222221 334578888888887765432 333
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~ 699 (781)
+|..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|...+++.++ ..|+. ..+..++.
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~ 414 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLW 414 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHH
Confidence 677777788889999999999999988 4565 45778888889999999999999999874 46763 33444555
Q ss_pred HhhhcCChHHHHHHHHhCC--CCCCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhH
Q 035828 700 MLGRSGKLQEAYEFIKNLP--IQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDA 776 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~--~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 776 (781)
.+...|++++|++.++++. .+|+.. .+..+...+...|+.++|...++++....|++......++..|...|+ +|
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a 492 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RA 492 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HH
Confidence 6777899999999988762 245444 456677777789999999999999988889888888899999888884 55
Q ss_pred Hh
Q 035828 777 VE 778 (781)
Q Consensus 777 ~~ 778 (781)
..
T Consensus 493 ~~ 494 (553)
T PRK12370 493 LP 494 (553)
T ss_pred HH
Confidence 54
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-06 Score=87.40 Aligned_cols=122 Identities=12% Similarity=0.112 Sum_probs=82.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 035828 438 WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPD-SVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMY 516 (781)
Q Consensus 438 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 516 (781)
+.-+...|-..|++++|++..++.++. .|+ ...|..-.+.+-+.|++.+|...++........ |..+-+-.+..+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~ 272 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHH
Confidence 344566777888888888888888774 355 344555566677788888888887777765543 666666677777
Q ss_pred HhcCChHHHHHHhhhcCCCCh----------hhHH--HHHHHHHhCCChhHHHHHHhhc
Q 035828 517 GRCRDIKSASTVFESCYNCNL----------CTWN--CMISAFSQNKAEVRALELFRHL 563 (781)
Q Consensus 517 ~~~g~~~~A~~~~~~~~~~~~----------~~~~--~l~~~~~~~~~~~~A~~~~~~~ 563 (781)
.++|++++|.+++......+. ..|- ....+|.+.|++..|+..|..+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 788888888887776654431 1332 2345677777777777666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.8e-06 Score=84.70 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=110.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.|......+.+.++.++|...+.+... +.| ....|......+...|++++|.+.|...+ -+.|+ +....++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 477777888899999999988888876 444 45567777777888999999999999886 56888 689999999
Q ss_pred HhhhcCChHHHHH--HHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 700 MLGRSGKLQEAYE--FIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 700 ~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
++.+.|+..-|.+ ++.++ +..| +...|..+...+.+.||.+.|..-|..+.++.+.+|-
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998777776 77776 6666 5668999999999999999999999999999877664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.6e-05 Score=79.66 Aligned_cols=681 Identities=12% Similarity=0.101 Sum_probs=337.3
Q ss_pred CcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHH-----HHHhc--CCCCc-
Q 035828 37 DVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCL-----SIKAG--MIADS- 108 (781)
Q Consensus 37 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~--~~~~~- 108 (781)
+..|-+.+=..=...|.+.--+.+|..+...| +.|..-=.-+.+.-..+|+.+-....+.+ -.+.| ++|..
T Consensus 393 t~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~ 471 (1666)
T KOG0985|consen 393 TPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDT 471 (1666)
T ss_pred CHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCc
Confidence 44455555555556677777778888887777 44443322334443444443333332221 11222 11211
Q ss_pred ----------chhhhHHHHhhccCChhhHHHHhccCC-CCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchH
Q 035828 109 ----------SLCNVFVNMYAKCGDLNSSECTFSGMH-CADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSL 177 (781)
Q Consensus 109 ----------~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 177 (781)
.+-+..+.+|+..|+++++.-...+.. .|| |-.+++...+ -+++.+.++...|.+..- ....+
T Consensus 472 ~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~di 545 (1666)
T KOG0985|consen 472 TLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADI 545 (1666)
T ss_pred hHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC--CcccH
Confidence 122334555555555555554444332 233 5556666655 567888888777766432 12222
Q ss_pred HHHHHHhhccCChhHHHHHHHHH---------------HHhcCCCCCc------------hhHHHHHHHHHHhcCChhHH
Q 035828 178 SSAVAASACLGELSYGKVIHALG---------------IKLGYEDSPY------------VSVTNSLISMYSQCGDIEAA 230 (781)
Q Consensus 178 ~~ll~~~~~~~~~~~a~~~~~~~---------------~~~~~~~~p~------------~~~~~~ll~~~~~~g~~~~a 230 (781)
..+...+...+....+..++-.. .+......|+ ..-+..+...|.+.|-...|
T Consensus 546 e~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qra 625 (1666)
T KOG0985|consen 546 EQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRA 625 (1666)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHH
Confidence 33333222222222222111111 1111111110 22234455666677777777
Q ss_pred HHHhccCC--CCCcccHH----HHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHH
Q 035828 231 ERAFWGMT--CKDVVSWN----AIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYA 304 (781)
Q Consensus 231 ~~~~~~~~--~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~ 304 (781)
++.+..+. .+.+..-+ --+..|...-.++.+++.++.|.... ++-+..+...+..-|+..--.+...++|+..
T Consensus 626 LehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~N-irqNlQi~VQvatky~eqlg~~~li~lFE~f 704 (1666)
T KOG0985|consen 626 LEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSAN-IRQNLQIVVQVATKYHEQLGAQALIELFESF 704 (1666)
T ss_pred HHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhCHHHHHHHHHhh
Confidence 77776664 11111111 11233444556778888888887766 7777666555555554443344444444444
Q ss_pred HHh-----------cCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHH-HHHHHHHHHHHHhcccCCchhhh
Q 035828 305 IRR-----------LLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWN-SMISGLFKEMLYLCSQFSFSTLL 372 (781)
Q Consensus 305 ~~~-----------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~~~~~~~~ 372 (781)
+.. ++.-|+.+.-..|.+-++.|++.+++++.++-.- |+ .-.+.++++-.. +| -.
T Consensus 705 ks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~------YdpErvKNfLkeAkL----~D---ql 771 (1666)
T KOG0985|consen 705 KSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNC------YDPERVKNFLKEAKL----TD---QL 771 (1666)
T ss_pred ccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcccc------CCHHHHHHHHHhccc----cc---cC
Confidence 321 2344555556677888888888888777643211 11 001111111100 00 11
Q ss_pred hhhcccCCCcchhhh-HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHH-------------HHHHhhcC-CCCccc
Q 035828 373 AILPSCNSPESLEFG-KSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAF-------------SLLQRISH-NSDTSC 437 (781)
Q Consensus 373 ~ll~~~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~-------------~~~~~~~~-~~~~~~ 437 (781)
.++..|.+-+-+... .-++. .+ .-..|..|.+.-++...- ++.+.+.. -.....
T Consensus 772 PLiiVCDRf~fVhdlvlYLyr----nn-------~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~ 840 (1666)
T KOG0985|consen 772 PLIIVCDRFDFVHDLVLYLYR----NN-------LQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP 840 (1666)
T ss_pred ceEEEecccccHHHHHHHHHH----hh-------HHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC
Confidence 223333322211110 00000 00 001112222111111110 11111000 012222
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHH-HHH---HHHH------HHHhcC-----
Q 035828 438 WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFE-GKS---LHGL------ALKSLM----- 502 (781)
Q Consensus 438 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~---~~~~------~~~~~~----- 502 (781)
-+-|+.-.-+.++..--+.+++...+.| ..|..|++.+...|...++-.+ ..+ .++. ..++..
T Consensus 841 ~deLv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~v 918 (1666)
T KOG0985|consen 841 VDELVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACV 918 (1666)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEE
Confidence 3444555556667777777777777776 4677888888888766554322 211 1111 111110
Q ss_pred --------------CCChHHHHHHHHHHHhcCChHHHHHHhhh-----------c-----C-CCChhhHHHHHHHHHhCC
Q 035828 503 --------------GLDTRVQNALITMYGRCRDIKSASTVFES-----------C-----Y-NCNLCTWNCMISAFSQNK 551 (781)
Q Consensus 503 --------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----------~-----~-~~~~~~~~~l~~~~~~~~ 551 (781)
-.....|....+-+.+..+.+--.+++.+ . + ..|+..-+..++++...+
T Consensus 919 aYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtad 998 (1666)
T KOG0985|consen 919 AYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTAD 998 (1666)
T ss_pred eecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcC
Confidence 00112222233333333443333333311 0 0 123345556677788888
Q ss_pred ChhHHHHHHhhcCCCCCHh-----HHHHHHHHhccc---------------------------CchHHHHHHHHHHHHhC
Q 035828 552 AEVRALELFRHLEFEPNEI-----SIVSILSACTQL---------------------------GVLRHGKQIHGHVFHLG 599 (781)
Q Consensus 552 ~~~~A~~~~~~~~~~p~~~-----~~~~ll~~~~~~---------------------------~~~~~a~~~~~~~~~~~ 599 (781)
-+.+-+++++++-+.|+.. --+.|+-...+. +-+++|..+|+..-
T Consensus 999 Lp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~--- 1075 (1666)
T KOG0985|consen 999 LPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD--- 1075 (1666)
T ss_pred CcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc---
Confidence 8888888888882222221 222232222222 12333333333221
Q ss_pred CCCCchHHHHHHHhh----------hcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC
Q 035828 600 FQENSFISSALLDMY----------SNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG 669 (781)
Q Consensus 600 ~~~~~~~~~~l~~~~----------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 669 (781)
.+....+.|++-- .+|..+..|+.+..+-...|...+|++-|-+.- |+..|..++..+.+.|
T Consensus 1076 --~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1076 --MNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTG 1147 (1666)
T ss_pred --ccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcC
Confidence 1111112222211 223567789999999999999998887765432 5678999999999999
Q ss_pred cHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHH
Q 035828 670 LVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELL 749 (781)
Q Consensus 670 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (781)
.+++-..++....+. .-.|. +-+.|+-+|++.+++.+-.+++ .-|+..-...+.+-|...|.++.|+-+|...
T Consensus 1148 ~~edLv~yL~MaRkk-~~E~~--id~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1148 KYEDLVKYLLMARKK-VREPY--IDSELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred cHHHHHHHHHHHHHh-hcCcc--chHHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 999999999877655 33444 4457889999999988877766 3477777778888888888888887777653
Q ss_pred hccCCCCCchHHHHHHHHHhcCChhhHH
Q 035828 750 FKLEPENVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 750 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
.-|..|+..+...|++..|.
T Consensus 1221 --------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1221 --------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred --------hhHHHHHHHHHHHHHHHHHH
Confidence 23444555555555554443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-08 Score=97.08 Aligned_cols=182 Identities=15% Similarity=0.117 Sum_probs=118.6
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035828 574 SILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 574 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
.+-..+...|+.+.|...|+...+... + +..+|+.+...+...|++++|++.|++..+ +.|
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l~P--~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P 129 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALALRP--D---------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDP 129 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCC--C---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCC
Confidence 333344555556666555555554322 2 223678888888899999999999999887 566
Q ss_pred C-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC--CCCCCcchHHHHH
Q 035828 654 T-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL--PIQPKPGVWGAML 730 (781)
Q Consensus 654 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 730 (781)
+ ..++..+..++...|++++|.+.+++..+. .|+..............+++++|++.+.+. ..+|+...+ .
T Consensus 130 ~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~-- 203 (296)
T PRK11189 130 TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-N-- 203 (296)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-H--
Confidence 4 457777888888889999999999988754 665432222223345667899999888654 233333222 2
Q ss_pred HHHHhcCCcHHHHHHHHHHh-------ccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 731 SACSHHGDTKMGKQVAELLF-------KLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
......|+...+ +.++.+. ++.|+.+.+|+.||.+|.+.|++++|+..++
T Consensus 204 ~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 204 IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 223345655443 2333333 4456677889999999999999999988653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.3e-06 Score=78.35 Aligned_cols=273 Identities=12% Similarity=0.005 Sum_probs=182.7
Q ss_pred cchHHHHHHHHHHH-HhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHH---HHHHHHHhCCChhHHHHHH
Q 035828 485 ELAFEGKSLHGLAL-KSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWN---CMISAFSQNKAEVRALELF 560 (781)
Q Consensus 485 ~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~A~~~~ 560 (781)
++...+...+-.+. ..-++-+......+.+++...|+.++|.-.|+.....|+.+.. ...-.+.+.|+.+....+.
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~ 289 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM 289 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence 33334444444443 3445667888888888999999999999999877644443222 2222345677777776666
Q ss_pred hhc-C-CCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHH
Q 035828 561 RHL-E-FEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWE 638 (781)
Q Consensus 561 ~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 638 (781)
..+ . .+-....|..-....-...+++.|..+-++.++.+... +..|-.-...+...++.++
T Consensus 290 ~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~-----------------~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 290 DYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN-----------------HEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc-----------------chHHHhccHHHHhccchHH
Confidence 665 2 21222222222223344567777777777666544321 1123333455678899999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHH-HHh-hhcCChHHHHHHHH
Q 035828 639 AIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIV-DML-GRSGKLQEAYEFIK 715 (781)
Q Consensus 639 A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~~~~ 715 (781)
|.=-|...+. +.| +-.+|..|+.+|...|++.+|.-.-....+. +.-+..++..+. ..+ ....--++|.++++
T Consensus 353 A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 353 AVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9988988876 565 5679999999999999999999888877654 233345555442 222 22334578999998
Q ss_pred hC-CCCCCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 716 NL-PIQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 716 ~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+. ++.|+-. ....+...|...|.++.++.++++.+...|+ ..-+..||+.+.+.+.+.+|.+-
T Consensus 429 k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 429 KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred hhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHH
Confidence 76 7788744 5566677788899999999999999988887 45788999999999999888764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.9e-08 Score=83.27 Aligned_cols=198 Identities=13% Similarity=0.136 Sum_probs=142.7
Q ss_pred HHHHHHhCCChhHHHHHHhhc-CCCCCH-hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCCh
Q 035828 543 MISAFSQNKAEVRALELFRHL-EFEPNE-ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSN 620 (781)
Q Consensus 543 l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 620 (781)
+.-.|...|++..|..-+++. ...|+. .++..+...|.+.|..+.|.+-|+...+......
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G----------------- 103 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG----------------- 103 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc-----------------
Confidence 344455555555555555555 444432 3444444455555555555555555554333222
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIV 698 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 698 (781)
...|..--.+|..|++++|...|++....-.-|. ..+|..+.-+..+.|+.+.|.+.|++.++. .|+ +.....+.
T Consensus 104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a 180 (250)
T COG3063 104 DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELA 180 (250)
T ss_pred chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHH
Confidence 2456666678999999999999999987543333 358988988888999999999999998754 777 57888999
Q ss_pred HHhhhcCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchH
Q 035828 699 DMLGRSGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
+...+.|++-.|...++.. +..++..++.-.++.....||.+.+-++=..+.++.|.++..-
T Consensus 181 ~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 181 RLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999999998877 3457777777777777889999999999999999999877543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-08 Score=106.63 Aligned_cols=201 Identities=14% Similarity=0.016 Sum_probs=94.6
Q ss_pred hhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHH
Q 035828 553 EVRALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAY 630 (781)
Q Consensus 553 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~ 630 (781)
.++|...+++. ...|+ ...+..+-..+...|++++|...++...+.+.. +...|..+...+
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-----------------~~~a~~~lg~~l 382 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-----------------SADIKYYYGWNL 382 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHH
Confidence 44555555554 44442 233333333444555555555555555544321 111344455555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQ 708 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 708 (781)
...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++++.+. ..|+ +..+..+..+|...|+++
T Consensus 383 ~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 383 FMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHH
Confidence 666666666666666665 344322 2222333344456666666666665433 1233 334555566666666666
Q ss_pred HHHHHHHhC-CCCCCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhH
Q 035828 709 EAYEFIKNL-PIQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDA 776 (781)
Q Consensus 709 ~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 776 (781)
+|...+.++ ...|+.. ..+.+...+...| +.|...++++.+..-..+.....+..+|.-.|+-+.|
T Consensus 459 eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (553)
T PRK12370 459 LARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAE 526 (553)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHH
Confidence 666666554 2333322 2333333334444 3555555555543322222222244444444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-07 Score=96.95 Aligned_cols=128 Identities=11% Similarity=0.092 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhHHHc-----CCCCC
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNS---GIRPTK----SSVISLLSACSHSGLVDEGLQYYNNMLEEY-----DVRPE 690 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~ 690 (781)
++.++..+...+++++|..+++...+. -..++. .+++.|...+...|++++|.+++++++... +..+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 444555566677777777666655431 122222 478888888888888888888888876652 12333
Q ss_pred -cchHHHHHHHhhhcCChHHHHHHHHhC-------C-CCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 691 -TEHHVCIVDMLGRSGKLQEAYEFIKNL-------P-IQPK-PGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 691 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
...++.|...|.+.+++.+|.++|.+. + ..|+ ..+|..|...|...|+++.|+++.+.+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 357778888888888888888877665 1 2333 3468888888888999999998888877
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7e-06 Score=81.90 Aligned_cols=178 Identities=11% Similarity=0.101 Sum_probs=115.6
Q ss_pred CChHHHHHHhhhcCCCCh-hhHHHHHHHH--HhCCChhHHHHHHhhc-CCCCCH--hHHHHHHHHhcccCchHHHHHHHH
Q 035828 520 RDIKSASTVFESCYNCNL-CTWNCMISAF--SQNKAEVRALELFRHL-EFEPNE--ISIVSILSACTQLGVLRHGKQIHG 593 (781)
Q Consensus 520 g~~~~A~~~~~~~~~~~~-~~~~~l~~~~--~~~~~~~~A~~~~~~~-~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~ 593 (781)
+..+.+.++....+...+ ..+..++... ++...+.+|.+++... .-.|+. ......+......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 556677777776664332 3444444432 2333577888888887 566655 344445556688999999999998
Q ss_pred --------HHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHH----HHH
Q 035828 594 --------HVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS--GIRPTKS----SVI 659 (781)
Q Consensus 594 --------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~----~~~ 659 (781)
.+.+.+..|.. ...++..+.+.++.+.|..++.+...- .-.+... ++.
T Consensus 401 ~~~~~~~ss~~~~~~~P~~------------------V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGT------------------VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHhhhhhhhhhhhccChhH------------------HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 55555555554 344555566677776677776665431 1112222 333
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCC
Q 035828 660 SLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLP 718 (781)
Q Consensus 660 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (781)
.+...-.+.|+-++|...++++.+- .+++......++.+|++. +.++|..+-+.+.
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 3334445679999999999999864 355678899999999887 6888988877763
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-07 Score=91.35 Aligned_cols=207 Identities=14% Similarity=0.003 Sum_probs=116.9
Q ss_pred HHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCCh
Q 035828 543 MISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSN 620 (781)
Q Consensus 543 l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 620 (781)
+...+...|+.++|...|++. ...|+ ...|+.+-..+...|+++.|...++...+... + +.
T Consensus 70 ~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--~---------------~~ 132 (296)
T PRK11189 70 RGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP--T---------------YN 132 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--C---------------CH
Confidence 333344444444444444444 33332 33444444444555555555555555444322 1 11
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDM 700 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 700 (781)
.+|..+...+...|++++|++.+++..+ ..|+..........+...++.++|...+++.... ..|+...+ .+..
T Consensus 133 ~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~~- 206 (296)
T PRK11189 133 YAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIVE- 206 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHHH-
Confidence 2566677777888999999999998887 4565432222222334567899999999775432 23333222 2322
Q ss_pred hhhcCChHH--HHHHHHhC-CCC----C-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCC-CCCchHHHHHHHHHhcC
Q 035828 701 LGRSGKLQE--AYEFIKNL-PIQ----P-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEP-ENVGYYISLSNMYVALG 771 (781)
Q Consensus 701 ~~~~g~~~~--A~~~~~~~-~~~----p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g 771 (781)
...|++.+ +.+.+.+. ... | ....|..++..+.+.|++++|+..++++.+.+| +.+.....+..+....+
T Consensus 207 -~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 207 -FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred -HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 33454433 33333322 111 1 234688888889999999999999999999996 55555555666555544
Q ss_pred Ch
Q 035828 772 RW 773 (781)
Q Consensus 772 ~~ 773 (781)
+.
T Consensus 286 ~~ 287 (296)
T PRK11189 286 DQ 287 (296)
T ss_pred hh
Confidence 43
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-05 Score=80.97 Aligned_cols=353 Identities=10% Similarity=-0.007 Sum_probs=231.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcC-C-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 035828 402 NTIGVNALMHMYINCGDLVAAFSLLQRISH-N-SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVIS 479 (781)
Q Consensus 402 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 479 (781)
+.+.|..+--.+....++++|.+.|..... . .|...|.-+.-.-++.|+++..........+. .+.....|..+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAV 151 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHH
Confidence 445566665666677889999999987532 2 46777877777777888999888888888774 2333456677777
Q ss_pred HhcCccchHHHHHHHHHHHHhc-CCCChHHHHHHH------HHHHhcCChHHHHHHhhhcCCC--Chh-hHHHHHHHHHh
Q 035828 480 ACGNLELAFEGKSLHGLALKSL-MGLDTRVQNALI------TMYGRCRDIKSASTVFESCYNC--NLC-TWNCMISAFSQ 549 (781)
Q Consensus 480 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~ 549 (781)
+.--.|+...|..+.+...+.. -.|+...+.... ....+.|..++|.+-+..-... |-. .-..-...+.+
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH
Confidence 7788899999999999988765 356666554433 2345678888888877665532 112 22344566889
Q ss_pred CCChhHHHHHHhhc-CCCCCHhHHHHHHHHhc-c-cCchHHHHHHHHHHHHhC---CCCCchHHHHHHHhhhcCCChhhH
Q 035828 550 NKAEVRALELFRHL-EFEPNEISIVSILSACT-Q-LGVLRHGKQIHGHVFHLG---FQENSFISSALLDMYSNCKSNAAW 623 (781)
Q Consensus 550 ~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-~-~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~ 623 (781)
.+++++|..++..+ ...||..-|.-.+..+. + .+..+....+++...+.= ..|.... .
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp----------------l 295 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP----------------L 295 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc----------------H
Confidence 99999999999999 78999888777666554 2 333333335555544421 1111110 0
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHH----HHHHHHHHhHHH---------cCCCC
Q 035828 624 SSMISAYGYHGKG-WEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVD----EGLQYYNNMLEE---------YDVRP 689 (781)
Q Consensus 624 ~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~---------~~~~p 689 (781)
+ ......+ +..-+++..+.+.|+++-...+.+|- -.....+ .+..+...+-.. ..-+|
T Consensus 296 s-----vl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 296 S-----VLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred H-----HhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 0 1111222 33446677778888776444444332 2211111 111111111100 00144
Q ss_pred C--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 690 E--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 690 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
. ..++..++..+-+.|+++.|..+++.+ ...|+.+ .|-.-.+.+.+.|+.+.|..+++++.+++-.|..+...-+.
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAK 447 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAK 447 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 4 256667888899999999999999987 6667644 44455677888999999999999999999888888778888
Q ss_pred HHHhcCChhhHHhhc
Q 035828 766 MYVALGRWKDAVEIG 780 (781)
Q Consensus 766 ~~~~~g~~~~A~~l~ 780 (781)
=..+.++.++|.++.
T Consensus 448 YmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHccccHHHHHHH
Confidence 888899999998764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-06 Score=90.88 Aligned_cols=286 Identities=15% Similarity=0.151 Sum_probs=176.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCChhhH-HHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC
Q 035828 443 VACTQNGHFQEAIKTFKSMTQQQNASPDSVTL-VNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRD 521 (781)
Q Consensus 443 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 521 (781)
..+...|++++|++.+++-.. ..+|...+ ......+.+.|+.++|..++..+++.+.. +..-|..+..+.+-...
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~---~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK---QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh---hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 445677888888888876544 33554433 33444456666666666666666665421 22233333333211110
Q ss_pred hHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCch-HHHHHHHHHHHHhC
Q 035828 522 IKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVL-RHGKQIHGHVFHLG 599 (781)
Q Consensus 522 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~ 599 (781)
......+...++|+++ ...|.......+.-.+.....+ ..+...+..+...|
T Consensus 88 --------------------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg 141 (517)
T PF12569_consen 88 --------------------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG 141 (517)
T ss_pred --------------------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC
Confidence 0112344555666666 3445444333332222222222 34556667777778
Q ss_pred CCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----C----------CCCCH--HHHHHHHH
Q 035828 600 FQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS----G----------IRPTK--SSVISLLS 663 (781)
Q Consensus 600 ~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g----------~~p~~--~~~~~l~~ 663 (781)
+++ +|+.+-..|....+..-..+++...... | -.|.. .++..+..
T Consensus 142 vPs-------------------lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAq 202 (517)
T PF12569_consen 142 VPS-------------------LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQ 202 (517)
T ss_pred Cch-------------------HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHH
Confidence 754 3555555555555555555555554432 1 12333 35566778
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTK 740 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 740 (781)
.|...|++++|++++++.++. .|+ +..|..-++.|-+.|++.+|.+.++.+ ...+. -..-+-.+..+.++|+.+
T Consensus 203 hyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 203 HYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred HHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 888999999999999999854 788 689999999999999999999999988 34554 444455566677899999
Q ss_pred HHHHHHHHHhccCCCCCc-------hH--HHHHHHHHhcCChhhHHhhc
Q 035828 741 MGKQVAELLFKLEPENVG-------YY--ISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~~~~-------~~--~~l~~~~~~~g~~~~A~~l~ 780 (781)
+|.+.+....+.+-+... .| ..-|.+|.++|++..|++-+
T Consensus 280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999988776631111 22 34677899999999998743
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-06 Score=86.25 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHH
Q 035828 634 GKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAY 711 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 711 (781)
...++++...+...- +.|+.. -...-...+.+.|++..|+..|.+++++ .|+ ...|.+-.-+|.+.|.+.+|+
T Consensus 338 k~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL 412 (539)
T KOG0548|consen 338 KEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEAL 412 (539)
T ss_pred HHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHH
Confidence 444555554444433 333321 1222245666778888888888888765 565 578888888888888888887
Q ss_pred HHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 712 EFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 712 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
+=.+.. ...|+ ...|..-..++....++++|.+.|.+.++++|++..+...+...+.++
T Consensus 413 ~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 413 KDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 665554 34443 335555566666778888888888888888888888888888777764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00023 Score=75.81 Aligned_cols=158 Identities=13% Similarity=0.057 Sum_probs=90.7
Q ss_pred chhhhHHHHhhccCChhhHHHHhccCCC---CCeeehHHHHHHHhhCCChhhHHHHHHHHhhcC-CCCCcchHHHHHHHh
Q 035828 109 SLCNVFVNMYAKCGDLNSSECTFSGMHC---ADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSG-EQADNVSLSSAVAAS 184 (781)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~ 184 (781)
..|..|-..|+...|..+|.+.|+..-+ .+...+......|++..+++.|..+.-.--+.. ...-...|...--.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4566777777776677777777775543 355566777777777777777777622221111 000001111111112
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhcCChhHHHHHhccCCCCCcc-cHHHHH--HHHHhCCChhH
Q 035828 185 ACLGELSYGKVIHALGIKLGYEDSP-YVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVV-SWNAII--DGFALNGKFEE 260 (781)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li--~~~~~~~~~~~ 260 (781)
...++...+..-++...+. +| +...|..+..+|..+|+...|.++|.+...-++. .|...- ...+..|.+.+
T Consensus 573 Lea~n~h~aV~~fQsALR~----dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRT----DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcC----CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 2334444444434333332 33 3678888888999999999999998776533222 233222 23466788888
Q ss_pred HHHHHHHHHH
Q 035828 261 AFDLLHEMQL 270 (781)
Q Consensus 261 a~~~~~~m~~ 270 (781)
+++.+.....
T Consensus 649 ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 ALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHH
Confidence 8888877654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.5e-09 Score=63.12 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=31.2
Q ss_pred CCCCCCCccchhHHHHHhhcCCchhHHHHhhhhc
Q 035828 1 RGFLAHLPTSTSLLTAYSNVSYFESSLALFYETC 34 (781)
Q Consensus 1 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 34 (781)
||+.||..+||+||.+|.+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 7999999999999999999999999999998874
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-07 Score=88.48 Aligned_cols=235 Identities=11% Similarity=0.086 Sum_probs=146.4
Q ss_pred HHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc--C-CCCCHhHHH-HHHHHhcccCchH
Q 035828 511 ALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL--E-FEPNEISIV-SILSACTQLGVLR 586 (781)
Q Consensus 511 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~-~~p~~~~~~-~ll~~~~~~~~~~ 586 (781)
-+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-+++. + ..++..++. .....+...|+++
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 34566666777766665555544555555554444444434556666666554 2 222233332 2223456778888
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACS 666 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 666 (781)
.|.+++..- . +.......+..|.+.++.+.|.+.++.|++ +..| .+...+..++.
T Consensus 120 ~AL~~l~~~------~----------------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv 174 (290)
T PF04733_consen 120 EALKLLHKG------G----------------SLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWV 174 (290)
T ss_dssp HHHCCCTTT------T----------------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHH
T ss_pred HHHHHHHcc------C----------------cccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHH
Confidence 888776532 1 222455567888999999999999999987 4444 44555655554
Q ss_pred c--c--CcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCc-
Q 035828 667 H--S--GLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDT- 739 (781)
Q Consensus 667 ~--~--~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~- 739 (781)
. . +.+.+|..+|+++.+. ..+++.+++.++.+....|++++|.+++.+. ...| ++.++..++-.....|+.
T Consensus 175 ~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 175 NLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred HHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence 3 2 3689999999998654 4567788888999999999999999998875 4444 455666666666777876
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhH
Q 035828 740 KMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDA 776 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 776 (781)
+.+.++..++....|++| .+...-.+...++++
T Consensus 253 ~~~~~~l~qL~~~~p~h~----~~~~~~~~~~~FD~~ 285 (290)
T PF04733_consen 253 EAAERYLSQLKQSNPNHP----LVKDLAEKEAEFDRA 285 (290)
T ss_dssp HHHHHHHHHCHHHTTTSH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHHHH
Confidence 778889999888889877 333333444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-07 Score=92.98 Aligned_cols=209 Identities=15% Similarity=0.271 Sum_probs=152.7
Q ss_pred HHhcCChHHHHHHhhhcCCCC---hhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHHHH
Q 035828 516 YGRCRDIKSASTVFESCYNCN---LCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGKQI 591 (781)
Q Consensus 516 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 591 (781)
+.+.|++.+|.-.|+.....| ...|.-|......+++-..|+..+++. ++.|+.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle-------------------- 354 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE-------------------- 354 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH--------------------
Confidence 456778888888887666443 357888887888888888888877777 77775432
Q ss_pred HHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH---------
Q 035828 592 HGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLL--------- 662 (781)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~--------- 662 (781)
+.-.|...|...|.-.+|+..++...... |.. ..+.
T Consensus 355 ------------------------------aLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y---~~l~~a~~~~~~~ 399 (579)
T KOG1125|consen 355 ------------------------------ALMALAVSYTNEGLQNQALKMLDKWIRNK--PKY---VHLVSAGENEDFE 399 (579)
T ss_pred ------------------------------HHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccc---hhccccCcccccc
Confidence 23334445566666667777777665421 110 0000
Q ss_pred --HHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCC
Q 035828 663 --SACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGD 738 (781)
Q Consensus 663 --~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 738 (781)
..+.....+....++|-++....+..+|+.++..|.-.|.-.|++++|++-|+.+ ..+|+ ...|+.|...+....+
T Consensus 400 ~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~ 479 (579)
T KOG1125|consen 400 NTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR 479 (579)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc
Confidence 1222223344555666666555465677888999999999999999999999977 66774 5589999999999999
Q ss_pred cHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 739 TKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 739 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
.++|+..|.+++++.|.-..+.++||-.|...|-++||.+.
T Consensus 480 s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 480 SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999864
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-07 Score=87.68 Aligned_cols=158 Identities=16% Similarity=0.057 Sum_probs=121.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK----SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHV 695 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~ 695 (781)
..+..+...+...|++++|...|++... ..|+. .++..+..++...|++++|...++++++...-.|.. ..+.
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALES--RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3566677788899999999999999987 34542 366778889999999999999999998763222221 2466
Q ss_pred HHHHHhhhc--------CChHHHHHHHHhC-CCCCCcc-hH-----------------HHHHHHHHhcCCcHHHHHHHHH
Q 035828 696 CIVDMLGRS--------GKLQEAYEFIKNL-PIQPKPG-VW-----------------GAMLSACSHHGDTKMGKQVAEL 748 (781)
Q Consensus 696 ~l~~~~~~~--------g~~~~A~~~~~~~-~~~p~~~-~~-----------------~~l~~~~~~~g~~~~A~~~~~~ 748 (781)
.+..++... |++++|.+.++++ ...|+.. .+ ..+...+.+.|++++|...+++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 666666654 7899999999887 4455432 22 1344556788999999999999
Q ss_pred HhccCCCCC---chHHHHHHHHHhcCChhhHHhhc
Q 035828 749 LFKLEPENV---GYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 749 ~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.+..|+++ ..+..++.+|.+.|++++|.+.+
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999987654 68999999999999999999864
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.9e-05 Score=80.12 Aligned_cols=578 Identities=11% Similarity=-0.012 Sum_probs=296.0
Q ss_pred ehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 035828 141 SWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISM 220 (781)
Q Consensus 141 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~ 220 (781)
.|..|-..|....+...|...|+...+-+ ..+......+...+++..+++.|..+.-..-+...... -..-|..+--.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~-~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA-CKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH-HHhhhhhcccc
Confidence 46677777777777788888888876533 22344577788889999999998887433322221100 01122223345
Q ss_pred HHhcCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH-Hhcccchhh
Q 035828 221 YSQCGDIEAAERAFWGMT---CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISL-CADSLLLRE 296 (781)
Q Consensus 221 ~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~-~~~~~~~~~ 296 (781)
|.+.++...|..-|+... +.|...|..+..+|.+.|++..|+++|.+... +.|+...-...... .+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHhHHHHHHHHHHHHHhhhHHH
Confidence 666788888888887664 34778899999999999999999999998877 77776432222222 457788888
Q ss_pred hhhHHHHHHHhcC------CCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHH-HHHHHHHHHHHhcccCCch
Q 035828 297 GRSVHGYAIRRLL------GYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNS-MISGLFKEMLYLCSQFSFS 369 (781)
Q Consensus 297 a~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-ll~~l~~~~~~~~~~~~~~ 369 (781)
+...+..+...-- .--..++-.+...+.-.|-..++.+.++.-.+ .+.. +++.+
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie-----~f~~~l~h~~-------------- 709 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE-----SFIVSLIHSL-------------- 709 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-----HHHHHHHHhh--------------
Confidence 8888877764311 11112222222222223333344444433222 0000 00000
Q ss_pred hhhhhhcccCCCcchh---hhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCH---H---HHHHHHHh-hcCCCCcccHH
Q 035828 370 TLLAILPSCNSPESLE---FGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDL---V---AAFSLLQR-ISHNSDTSCWN 439 (781)
Q Consensus 370 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~---~---~a~~~~~~-~~~~~~~~~~~ 439 (781)
+...-.+. .+-.+|.+.. .. .|+.....++..-.-+.+.. + -+.+.+-. +..-.+..+|.
T Consensus 710 --------~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~Wy 779 (1238)
T KOG1127|consen 710 --------QSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWY 779 (1238)
T ss_pred --------hhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHH
Confidence 00000000 1111111111 00 12222222222211111111 1 00111100 00002344554
Q ss_pred HHHHHHHh----C----CChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHH
Q 035828 440 IVIVACTQ----N----GHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNA 511 (781)
Q Consensus 440 ~li~~~~~----~----~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 511 (781)
.+...|.+ . .+...|+..++...+. ..+...+-..+......|++.-+...|-.-+... +....+|..
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L---~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~N 855 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSL---CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLN 855 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH---hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheec
Confidence 44443333 1 2234677777777663 3444445555555566666666655554333222 224455666
Q ss_pred HHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-------CCCCCHhHHHHHHHHhcc
Q 035828 512 LITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-------EFEPNEISIVSILSACTQ 581 (781)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~ 581 (781)
+--.+.+..+++.|...|.... +.|.+.|--........|+.-+++.+|..- |-.|+..-+.....-...
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~ 935 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQ 935 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHh
Confidence 6666778889999998888776 334566766555566778888888888763 233443332222223334
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhh-cC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHH
Q 035828 582 LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYS-NC-KSNAAWSSMISAYGYHGKGWEAIELFHEMCNS-GIRPTKSSV 658 (781)
Q Consensus 582 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~ 658 (781)
.|+.+.-..-.+.+.... ..+.-|. +. .+.++|.+.....-+.+.+..|.++..+...- ..+-|...|
T Consensus 936 Ng~~e~~I~t~~ki~sAs---------~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqy 1006 (1238)
T KOG1127|consen 936 NGNIEESINTARKISSAS---------LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQY 1006 (1238)
T ss_pred ccchHHHHHHhhhhhhhH---------HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444333222222221111 0111111 11 23446777777777777777777776665321 023344455
Q ss_pred HHHH----HHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC-cchHHHH
Q 035828 659 ISLL----SACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-P---IQPK-PGVWGAM 729 (781)
Q Consensus 659 ~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~-~~~~~~l 729 (781)
+.+. +-++..|.++.|...+...-. ..+..+...-+. ..-.|+++++.+.|+++ . ...+ +.....+
T Consensus 1007 nvak~~~gRL~lslgefe~A~~a~~~~~~----evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kv 1081 (1238)
T KOG1127|consen 1007 NVAKPDAGRLELSLGEFESAKKASWKEWM----EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKV 1081 (1238)
T ss_pred hhhhhhhhhhhhhhcchhhHhhhhcccch----hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 5432 223334455544433322110 001111111111 12356788888888776 2 1222 2344555
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
+......+..+.|...+-+...+.|.+......|+-++.-.
T Consensus 1082 a~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild 1122 (1238)
T KOG1127|consen 1082 AVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILD 1122 (1238)
T ss_pred HHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHh
Confidence 55556778888888888888888887777777776665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-05 Score=80.29 Aligned_cols=156 Identities=14% Similarity=0.098 Sum_probs=83.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchH----
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGI-RPTK--SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHH---- 694 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~---- 694 (781)
.+..+...+...|++++|+.++++.....- .|+. ..|..+...+...|++++|..++++.... .|.....
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~---~~~~~~~~~~~ 226 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP---SAESDPALDLL 226 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---ccCCChHHHHh
Confidence 344555556666777777777766665321 1222 23445566666677777777777766422 2211111
Q ss_pred H--HHHHHhhhcCChHHHHHH--H-HhC-CCCC-CcchH--HHHHHHHHhcCCcHHHHHHHHHHhccC---------CCC
Q 035828 695 V--CIVDMLGRSGKLQEAYEF--I-KNL-PIQP-KPGVW--GAMLSACSHHGDTKMGKQVAELLFKLE---------PEN 756 (781)
Q Consensus 695 ~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p-~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~---------p~~ 756 (781)
+ .++..+...|..+.+.++ + ... ...| ....+ .+.+.++...|+.+.|...++.+.... +..
T Consensus 227 ~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 306 (355)
T cd05804 227 DAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARD 306 (355)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHh
Confidence 1 222333334432222222 1 111 1001 11112 244555667788888888888776533 123
Q ss_pred CchHHHHHHHHHhcCChhhHHhhc
Q 035828 757 VGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 757 ~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.......+.++.++|++++|++++
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L 330 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELL 330 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHH
Confidence 555677888899999999998865
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-06 Score=81.09 Aligned_cols=253 Identities=12% Similarity=0.071 Sum_probs=137.3
Q ss_pred HHhcCCHHHHHHHHHhhcCCC--CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHH
Q 035828 413 YINCGDLVAAFSLLQRISHNS--DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEG 490 (781)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 490 (781)
+.-.|++..+..-.+.-...+ +......+.+++...|+++.++. ++... -.|.......+...+...++.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~--~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS--SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT--SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC--CChhHHHHHHHHHHHhCccchHHH
Confidence 344566666664444111111 22334455677777777665432 33222 345555554444444443333444
Q ss_pred HHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC
Q 035828 491 KSLHGLALKSLMG-LDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPN 568 (781)
Q Consensus 491 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~ 568 (781)
..-+......... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.| ....|
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD 163 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED 163 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3333333222222 12222222234455667777777776654 33344445556666666666666666666 34444
Q ss_pred HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 569 EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 569 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
..... ...+.+......+++.+|..+|+++.+
T Consensus 164 ~~l~q------------------------------------------------La~awv~l~~g~e~~~~A~y~f~El~~ 195 (290)
T PF04733_consen 164 SILTQ------------------------------------------------LAEAWVNLATGGEKYQDAFYIFEELSD 195 (290)
T ss_dssp HHHHH------------------------------------------------HHHHHHHHHHTTTCCCHHHHHHHHHHC
T ss_pred HHHHH------------------------------------------------HHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 32211 122333334344678889999999766
Q ss_pred CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCCh-HHHHHHHHhCC-CCCCcc
Q 035828 649 SGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKL-QEAYEFIKNLP-IQPKPG 724 (781)
Q Consensus 649 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~-~~A~~~~~~~~-~~p~~~ 724 (781)
. ..++..+.+.+..++...|++++|.+++++.+ ...|. +.+..+++-+....|+. +.+.+.+.+++ ..|+..
T Consensus 196 ~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al---~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 196 K-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL---EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp C-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC---CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred c-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 4 56778888888888888999999999888875 34565 56777788887788877 55667887773 455544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-07 Score=78.27 Aligned_cols=124 Identities=10% Similarity=0.124 Sum_probs=103.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-
Q 035828 640 IELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL- 717 (781)
Q Consensus 640 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 717 (781)
..++++..+ +.|+. +..+..++...|++++|...|+..+. ..|+ ...|..+..++.+.|++++|+..++++
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356666665 55664 55567788889999999999999874 4675 688999999999999999999999987
Q ss_pred CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 718 PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 718 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
...| +...+..+..++...|++++|+..+++++++.|+++.++..++.+....
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4455 6678888999999999999999999999999999999999988876543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.5e-07 Score=80.16 Aligned_cols=139 Identities=12% Similarity=0.193 Sum_probs=94.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcC
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSG 705 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 705 (781)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..++. .|+ ...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCC
Confidence 4556777887776544432221 11 0122355667777777776644 554 577888888888888
Q ss_pred ChHHHHHHHHhC-CCCC-CcchHHHHHHHH-HhcCC--cHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 706 KLQEAYEFIKNL-PIQP-KPGVWGAMLSAC-SHHGD--TKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 706 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++++|...++++ ...| +...+..+..++ ...|+ .++|.++++++.+.+|+++.++.+|+..+.+.|++++|++.|
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888776 4455 444566666654 45566 588888888888888888888888888888888888888765
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-05 Score=77.29 Aligned_cols=219 Identities=13% Similarity=0.126 Sum_probs=154.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHH-HHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhc
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSIL-SACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSN 616 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 616 (781)
-...+.++..+..+++.|++.+... .+. ...+|...+ .++...|.+......-....+.|-... .-|+.+...
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~--- 300 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKA--- 300 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHH---
Confidence 3445677777888899999988888 666 555555444 456777777776666665555443321 122222222
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHH
Q 035828 617 CKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHV 695 (781)
Q Consensus 617 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~ 695 (781)
+..+..+|.+.++++.|+..|++.....-.||. ..+....++++...+... -+.|.. .---
T Consensus 301 ------~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a---~~~pe~A~e~r 362 (539)
T KOG0548|consen 301 ------LARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKA---YINPEKAEEER 362 (539)
T ss_pred ------HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHH---hhChhHHHHHH
Confidence 333556778889999999999997765444442 222334455555555442 345653 2222
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRW 773 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 773 (781)
.-...+.+.|++.+|+..+.++ ...| |...|..-..++.+.|++..|..-.+..++++|+.+..|..-+.++....+|
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 3367788999999999999987 3344 6678888888889999999999999999999999999999999999999999
Q ss_pred hhHHhhc
Q 035828 774 KDAVEIG 780 (781)
Q Consensus 774 ~~A~~l~ 780 (781)
++|.+-+
T Consensus 443 dkAleay 449 (539)
T KOG0548|consen 443 DKALEAY 449 (539)
T ss_pred HHHHHHH
Confidence 9998754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0002 Score=65.27 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=59.6
Q ss_pred hcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHH
Q 035828 415 NCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLH 494 (781)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 494 (781)
..+++..+..++++...+.+..+.+...-...+.|+++.|++-|+...+-+|..|- ..|+..+..| +.++.+.|.+..
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyasALk~i 201 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYASALKHI 201 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHH
Confidence 35666667777777644455555555555566788888888888888887756654 4565555444 557788888888
Q ss_pred HHHHHhcCC
Q 035828 495 GLALKSLMG 503 (781)
Q Consensus 495 ~~~~~~~~~ 503 (781)
.+++.+|++
T Consensus 202 SEIieRG~r 210 (459)
T KOG4340|consen 202 SEIIERGIR 210 (459)
T ss_pred HHHHHhhhh
Confidence 888887765
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0002 Score=66.69 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHH---HHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHH-HHHhcC
Q 035828 408 ALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVI---VACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNV-ISACGN 483 (781)
Q Consensus 408 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l-l~~~~~ 483 (781)
.+-..+...|++.+|+.-|... .+.|+..|.++. ..|...|+..-|+.-+.+.++ .+||...-..- -..+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaA-ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAA-VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhh
Confidence 4555667778888888888776 455566665554 467788888888888888887 56875433221 123567
Q ss_pred ccchHHHHHHHHHHHHhc
Q 035828 484 LELAFEGKSLHGLALKSL 501 (781)
Q Consensus 484 ~~~~~~a~~~~~~~~~~~ 501 (781)
.|.++.|..=|+...+..
T Consensus 119 ~Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHE 136 (504)
T ss_pred cccHHHHHHHHHHHHhcC
Confidence 788888888887777654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00015 Score=84.82 Aligned_cols=356 Identities=12% Similarity=0.036 Sum_probs=203.9
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCCCCc-ccHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCChhhHHHHHHHhcCccch
Q 035828 410 MHMYINCGDLVAAFSLLQRISHNSDT-SCWNIVIVACTQNGHFQEAIKTFKSMTQQQ-NASPDSVTLVNVISACGNLELA 487 (781)
Q Consensus 410 i~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~ 487 (781)
...+...|++.+|..........+.. .............|+++.+...++.+.... ...|.. .......+...+++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l--~~~~a~~~~~~g~~ 425 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRL--VLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcch--HHHHHHHHHHCCCH
Confidence 33455566666665555444211100 011112223445566666666655542111 011221 22223334456677
Q ss_pred HHHHHHHHHHHHhcC------CCC--hHHHHHHHHHHHhcCChHHHHHHhhhcCC----CCh----hhHHHHHHHHHhCC
Q 035828 488 FEGKSLHGLALKSLM------GLD--TRVQNALITMYGRCRDIKSASTVFESCYN----CNL----CTWNCMISAFSQNK 551 (781)
Q Consensus 488 ~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~~ 551 (781)
+++...+......-- .+. ......+...+...|++++|...++.... .+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 777777666543210 111 11112223445578888888887776431 121 24455566677899
Q ss_pred ChhHHHHHHhhc-C----CCC-C--HhHHHHHHHHhcccCchHHHHHHHHHHHHh----CCCCCchHHHHHHHhhhcCCC
Q 035828 552 AEVRALELFRHL-E----FEP-N--EISIVSILSACTQLGVLRHGKQIHGHVFHL----GFQENSFISSALLDMYSNCKS 619 (781)
Q Consensus 552 ~~~~A~~~~~~~-~----~~p-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~ 619 (781)
++++|...+++. . ..+ . ..++..+...+...|+++.|...++...+. +...... .
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~-------------~ 572 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM-------------H 572 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH-------------H
Confidence 999999888877 1 112 1 234445555677889999999988776542 2111110 0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchH-
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNS--GIRPT--KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHH- 694 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~- 694 (781)
...+..+...+...|++++|...+++.... ...+. ...+..+.......|+.++|...+++.............+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 112344555667789999999999887652 11222 2345556667778999999999998885431111111111
Q ss_pred ----HHHHHHhhhcCChHHHHHHHHhCCCC--CCcc----hHHHHHHHHHhcCCcHHHHHHHHHHhccCC------CCCc
Q 035828 695 ----VCIVDMLGRSGKLQEAYEFIKNLPIQ--PKPG----VWGAMLSACSHHGDTKMGKQVAELLFKLEP------ENVG 758 (781)
Q Consensus 695 ----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~ 758 (781)
......+...|+.+.|.+++...... .... .+..+..++...|+.++|...++++..... ....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11224445689999999998776321 1111 134566677889999999999999987631 2334
Q ss_pred hHHHHHHHHHhcCChhhHHhhc
Q 035828 759 YYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++..++.+|.+.|+.++|.+.+
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L 754 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVL 754 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 6778999999999999998764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.1e-06 Score=75.97 Aligned_cols=150 Identities=11% Similarity=0.119 Sum_probs=73.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCC
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGK 706 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 706 (781)
-..+...|+-+....+....... ..-|......++....+.|++.+|...+++... .-++|...|+.+.-+|.+.|+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccC
Confidence 33344444444444444433221 112333333455555555555555555555542 122334555555555555555
Q ss_pred hHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 707 LQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 707 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
.++|..-+.+. .+.| ++..++.+.-.+.-.||++.|..++..+....+.++.+--+|+.+...+|++++|.++
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555544443 2222 3334455555555555555555555555555555555555555555555555555544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.3e-05 Score=68.48 Aligned_cols=304 Identities=10% Similarity=0.013 Sum_probs=198.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHH-H
Q 035828 402 NTIGVNALMHMYINCGDLVAAFSLLQRISHN-S-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNV-I 478 (781)
Q Consensus 402 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l-l 478 (781)
...-+.+.+..+.+..++.+|.+++..-..+ | +....+.+..+|-...++..|-..|+.+-. ..|...-|... .
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~A 85 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQA 85 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH
Confidence 3334556666677888888888888765333 4 556677888888888899999999998876 55776666542 3
Q ss_pred HHhcCccchHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHhcCChHHHHHHhhhcCC-CChhhHHHHHHHHHhCCChhH
Q 035828 479 SACGNLELAFEGKSLHGLALKSLMGLDTRV--QNALITMYGRCRDIKSASTVFESCYN-CNLCTWNCMISAFSQNKAEVR 555 (781)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 555 (781)
.++.+.+.+..|..+...|... +.... ...-....-..+++..+..+++..+. .+..+.+.......+.|+++.
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 4566777888888888777543 11111 11111123457888889999998884 444455555555678999999
Q ss_pred HHHHHhhc----CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHH----HHHHHhhhcC--------CC
Q 035828 556 ALELFRHL----EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFIS----SALLDMYSNC--------KS 619 (781)
Q Consensus 556 A~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~--------~~ 619 (781)
|++-|+.. |.+| ...|+..+. ..+.++.+.|.....+++..|++..+..- .-.++.-... .-
T Consensus 163 AvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999988 4666 345655444 44668999999999999988776322210 0000000000 01
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNS-GIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
+.++|.-...+-+.++++.|.+-+-.|.-. ....|++|...+.-.- ..+++.+...-++=++ ++.|= ..++.++
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL---~~nPfP~ETFANl 316 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLL---QQNPFPPETFANL 316 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHH---hcCCCChHHHHHH
Confidence 123444455567789999999988888643 2455778877664222 2345555555555554 45664 4799999
Q ss_pred HHHhhhcCChHHHHHHHHhC
Q 035828 698 VDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~ 717 (781)
+-.||+..-++-|-+++-+-
T Consensus 317 LllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhC
Confidence 99999999999999987664
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.2e-07 Score=76.42 Aligned_cols=100 Identities=15% Similarity=-0.017 Sum_probs=85.7
Q ss_pred HHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 676 QYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 676 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
.++++.+ ...|+. +..+...+...|++++|.+.++.+ ...| +...+..+..++...|++++|...++++.+++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4555554 335653 556788999999999999999987 4555 56688999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 754 PENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 754 p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|+++.++..+|.++...|++++|++.+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~ 115 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAF 115 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999865
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-07 Score=56.14 Aligned_cols=33 Identities=24% Similarity=0.522 Sum_probs=23.9
Q ss_pred CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 035828 649 SGIRPTKSSVISLLSACSHSGLVDEGLQYYNNM 681 (781)
Q Consensus 649 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 681 (781)
+|+.||..||+.||.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 366777777777777777777777777777766
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00027 Score=72.42 Aligned_cols=188 Identities=7% Similarity=-0.035 Sum_probs=114.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcC-CC-Cccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChh-hHHH---
Q 035828 406 VNALMHMYINCGDLVAAFSLLQRISH-NS-DTSC---WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSV-TLVN--- 476 (781)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~-~~-~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-~~~~--- 476 (781)
|..+...+...|+.+++.+.+..... .+ +... .......+...|++++|...+++..+.. |+.. .+..
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY---PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHhHH
Confidence 33344445555666665544444321 11 2211 2222345667889999999999888753 4433 3221
Q ss_pred HHHHhcCccchHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCC
Q 035828 477 VISACGNLELAFEGKSLHGLALKSLMGLD-TRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKA 552 (781)
Q Consensus 477 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 552 (781)
........+..+.+.+.+.. .....|+ ......+...+...|++++|...++... +.+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 11111223444445544443 1122233 3344455667888999999999998776 3345677788888999999
Q ss_pred hhHHHHHHhhc-CCC---CCH--hHHHHHHHHhcccCchHHHHHHHHHHHHh
Q 035828 553 EVRALELFRHL-EFE---PNE--ISIVSILSACTQLGVLRHGKQIHGHVFHL 598 (781)
Q Consensus 553 ~~~A~~~~~~~-~~~---p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 598 (781)
+++|..++++. ... |+. ..+..+...+...|+.++|..+++.....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999887 433 332 23445677788899999999999887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-05 Score=86.29 Aligned_cols=130 Identities=10% Similarity=0.082 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
+.++-.|.......|++++|..+++...+ +.||.. .+..+...+.+.+++++|+..+++.++. .|+ ...+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~ 160 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLE 160 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHH
Confidence 44555566666666666666666666666 556543 4555556666666666666666666533 555 3555566
Q ss_pred HHHhhhcCChHHHHHHHHhCC-CCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCC
Q 035828 698 VDMLGRSGKLQEAYEFIKNLP-IQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 754 (781)
..++.+.|++++|.++|+++- ..|+ ...+..+...+...|+.++|...|+++++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 666666666666666666652 2332 44555666666666666666666666666653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-05 Score=70.87 Aligned_cols=126 Identities=16% Similarity=0.098 Sum_probs=76.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
|.......+....+.|++.+|+..+.+.... -+||...|+.+.-+|.+.|+.++|..-|.+.++- .|+ +..++++
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L---~~~~p~~~nNl 174 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL---APNEPSIANNL 174 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh---ccCCchhhhhH
Confidence 3334444566666667777777766666653 2445566666666666677777777666666533 443 4556666
Q ss_pred HHHhhhcCChHHHHHHHHhCCC-CC-CcchHHHHHHHHHhcCCcHHHHHHHHH
Q 035828 698 VDMLGRSGKLQEAYEFIKNLPI-QP-KPGVWGAMLSACSHHGDTKMGKQVAEL 748 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (781)
.-.|.-.|+++.|..++.+... .+ +..+-..+..+....|+++.|+.+...
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6666666777777666665532 22 444556666666666676666666554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.1e-05 Score=85.01 Aligned_cols=214 Identities=14% Similarity=0.161 Sum_probs=139.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-C-CCCCH-----hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHH
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-E-FEPNE-----ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALL 611 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 611 (781)
.|-..|......++.++|.+++++. + ++|.. ..|.++++.-..-|.-+...++|+++.+..-.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~---------- 1529 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA---------- 1529 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch----------
Confidence 4444444444445555555554444 2 33321 23334444434444445555555555442211
Q ss_pred HhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-
Q 035828 612 DMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE- 690 (781)
Q Consensus 612 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~- 690 (781)
-..|..|...|.+.+++++|.++++.|.++ +.-....|...+..+.+..+.+.|..++++.++. -|.
T Consensus 1530 --------~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~ 1597 (1710)
T KOG1070|consen 1530 --------YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQ 1597 (1710)
T ss_pred --------HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchh
Confidence 114677777888888889999999988875 4445568888888888888888888888888765 443
Q ss_pred --cchHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccC--CCCCchHHHHH
Q 035828 691 --TEHHVCIVDMLGRSGKLQEAYEFIKNL-P-IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLE--PENVGYYISLS 764 (781)
Q Consensus 691 --~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~ 764 (781)
.......++.-.+.|+.+++..+|+.. . .+-....|+.+++.-.++|+.+.+..+|+++..+. |.....++..=
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 455556667777888888888888766 2 33356688888888889999999999999998776 66666666555
Q ss_pred HHHHhc-CChh
Q 035828 765 NMYVAL-GRWK 774 (781)
Q Consensus 765 ~~~~~~-g~~~ 774 (781)
.-|.++ |+-.
T Consensus 1678 LeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1678 LEYEKSHGDEK 1688 (1710)
T ss_pred HHHHHhcCchh
Confidence 555554 5543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.8e-05 Score=70.67 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=102.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHh-hhcCC--hH
Q 035828 633 HGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDML-GRSGK--LQ 708 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~ 708 (781)
.++.++++..++...+. -+.|...|..+...+...|++++|...+++..+ ..|+ ...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 46778888888887763 244677899999999999999999999999874 4676 57888888864 67777 59
Q ss_pred HHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHH
Q 035828 709 EAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISL 763 (781)
Q Consensus 709 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 763 (781)
+|.+++++. ...| +...+..+...+...|++++|+..|++++++.|++...+-.+
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999987 5555 556788888889999999999999999999998777665444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-05 Score=80.00 Aligned_cols=232 Identities=13% Similarity=0.095 Sum_probs=180.2
Q ss_pred cCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHh
Q 035828 501 LMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSAC 579 (781)
Q Consensus 501 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 579 (781)
+++|-...-..+...+.+.|-...|..+|++.. .|.-.|.+|+..|+..+|..+..+. +-.||..-|..+.+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVL 467 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhc
Confidence 345666666778888999999999999998754 6888899999999999999988887 7788999999999988
Q ss_pred cccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHH
Q 035828 580 TQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSV 658 (781)
Q Consensus 580 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~ 658 (781)
....-++.|.++.+....... ..+.....+.++++++.+.|+.-.+ +.| -..+|
T Consensus 468 ~d~s~yEkawElsn~~sarA~-----------------------r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~w 522 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQ-----------------------RSLALLILSNKDFSEADKHLERSLE--INPLQLGTW 522 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHH-----------------------HhhccccccchhHHHHHHHHHHHhh--cCccchhHH
Confidence 888889999999876543200 0011112346899999999998776 444 44588
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCcchHHHHHHHHHh
Q 035828 659 ISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPGVWGAMLSACSH 735 (781)
Q Consensus 659 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 735 (781)
-.+..+..+.+++..|.+.|.... ...|+ ...|+++..+|.+.|+..+|...++++ +. ..+-.+|...+-...+
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD 599 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh
Confidence 888777788999999999999876 55887 589999999999999999999999887 33 3345578888888889
Q ss_pred cCCcHHHHHHHHHHhccC--CCCCchHHHHHH
Q 035828 736 HGDTKMGKQVAELLFKLE--PENVGYYISLSN 765 (781)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~ 765 (781)
.|..++|++.+.++.+.. -.++.....+..
T Consensus 600 vge~eda~~A~~rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred cccHHHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 999999999999998764 224444443333
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00011 Score=71.90 Aligned_cols=207 Identities=13% Similarity=0.119 Sum_probs=139.0
Q ss_pred HHHHHHHhCCChhHHHHHHhhc-CCCCCHhH-HHHHHHHhcccC-chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCC
Q 035828 542 CMISAFSQNKAEVRALELFRHL-EFEPNEIS-IVSILSACTQLG-VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCK 618 (781)
Q Consensus 542 ~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 618 (781)
.+-..+...++.++|+.++.++ ...|+..| ++.--..+...| +++++...++.+.+...+.-.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq-------------- 107 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ-------------- 107 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH--------------
Confidence 3334455566777788777777 67776543 333323334445 467777777777765443222
Q ss_pred ChhhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchH
Q 035828 619 SNAAWSSMISAYGYHGK--GWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHH 694 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 694 (781)
+|+-.--.+.+.|+ .++++++++++.+ ..| |..+|....-++...|+++++++.++++++. .|+ ...|
T Consensus 108 ---aW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW 179 (320)
T PLN02789 108 ---IWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAW 179 (320)
T ss_pred ---HhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHH
Confidence 34433333444454 3678889988887 455 5668888888888889999999999999865 554 4666
Q ss_pred HHHHHHhhhc---CCh----HHHHHHHHhC-CCCC-CcchHHHHHHHHHhc----CCcHHHHHHHHHHhccCCCCCchHH
Q 035828 695 VCIVDMLGRS---GKL----QEAYEFIKNL-PIQP-KPGVWGAMLSACSHH----GDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 695 ~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
+.....+.+. |.. +++++...++ ...| +...|+.+...+... ++..+|.....++.+.+|+++.++.
T Consensus 180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~ 259 (320)
T PLN02789 180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALS 259 (320)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHH
Confidence 6666555444 222 4566666444 5555 556787777777663 4456799999999998999999999
Q ss_pred HHHHHHHhc
Q 035828 762 SLSNMYVAL 770 (781)
Q Consensus 762 ~l~~~~~~~ 770 (781)
.|+.+|...
T Consensus 260 ~l~d~~~~~ 268 (320)
T PLN02789 260 DLLDLLCEG 268 (320)
T ss_pred HHHHHHHhh
Confidence 999999864
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-05 Score=74.70 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=47.6
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC----CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP----KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
.+...+.+.|++++|+..+++. ...| ....+..++.++.+.|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4667788999999999988876 2233 2357888889999999999999999888777664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.004 Score=62.29 Aligned_cols=153 Identities=11% Similarity=0.048 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhc---CCCC-CHhHHHHHHHHhcccCchHHHHHHHHH-HHHhCCCCCchHHHHHHH
Q 035828 538 CTWNCMISAFSQNKAEVRALELFRHL---EFEP-NEISIVSILSACTQLGVLRHGKQIHGH-VFHLGFQENSFISSALLD 612 (781)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~ 612 (781)
.+|...|+.-.+..-...|..+|.+. +..+ ....+++++..++ .++.+-|.++|+. |.+.|-.|-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~--------- 436 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPE--------- 436 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChH---------
Confidence 35555666655655666666666666 2333 4444555555443 2455556666654 333333221
Q ss_pred hhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHHcC--CC
Q 035828 613 MYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK--SSVISLLSACSHSGLVDEGLQYYNNMLEEYD--VR 688 (781)
Q Consensus 613 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 688 (781)
--...++-+...++-..|..+|++....++.||. ..|..++.--..-|+...+.++-+++...+. ..
T Consensus 437 ---------yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe 507 (656)
T KOG1914|consen 437 ---------YVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQE 507 (656)
T ss_pred ---------HHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhc
Confidence 2244555566677777788888888877666654 4788888777778888888888777766544 33
Q ss_pred CCcchHHHHHHHhhhcCChHH
Q 035828 689 PETEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 689 p~~~~~~~l~~~~~~~g~~~~ 709 (781)
|....-..+++.|.-.+.+.-
T Consensus 508 ~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 508 YEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred CCCChHHHHHHHHhhcccccc
Confidence 333444455555555554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-05 Score=79.90 Aligned_cols=218 Identities=17% Similarity=0.191 Sum_probs=155.3
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHH
Q 035828 398 GFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNV 477 (781)
Q Consensus 398 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l 477 (781)
+.+|--..-..+...+...|-...|..+|+++ ..|.-+|.+|+..|+..+|.++..+-.+ -+||..-|..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHh
Confidence 34455555566778888999999999999987 6788899999999999999999888777 35888888888
Q ss_pred HHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCC---hhhHHHHHHHHHhCCChh
Q 035828 478 ISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCN---LCTWNCMISAFSQNKAEV 554 (781)
Q Consensus 478 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 554 (781)
.+......-+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+-+ ..+|-....+..+.++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 88888877888888887765322 11222222334678888888887554333 347777777777888888
Q ss_pred HHHHHHhhc-CCCCCH-hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh
Q 035828 555 RALELFRHL-EFEPNE-ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGY 632 (781)
Q Consensus 555 ~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 632 (781)
.|.+.|..- ...||. ..|+.+-.++.+.++..+|...+++..+.+..+-. .|...+-...+
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~-----------------iWENymlvsvd 599 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ-----------------IWENYMLVSVD 599 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-----------------eeechhhhhhh
Confidence 888888877 677754 45666666777777777777776666665533322 36666666666
Q ss_pred cCChHHHHHHHHHHHh
Q 035828 633 HGKGWEAIELFHEMCN 648 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~ 648 (781)
.|.+++|++.+.++..
T Consensus 600 vge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLLD 615 (777)
T ss_pred cccHHHHHHHHHHHHH
Confidence 6677777666666654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0003 Score=65.57 Aligned_cols=290 Identities=10% Similarity=0.120 Sum_probs=152.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHH---HHhcCccchHHHHHHHHHHHHhcCCCChHHHH-HHHHHH
Q 035828 441 VIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVI---SACGNLELAFEGKSLHGLALKSLMGLDTRVQN-ALITMY 516 (781)
Q Consensus 441 li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~ 516 (781)
+-..+...|++..|+..|....+- .|+ .|..+. ..|...|+...|..=+....+ .+||-.... .=-..+
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~---dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG---DPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC---Cch--hHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 445667788999999999888663 244 333322 234444444444444443333 234422211 111234
Q ss_pred HhcCChHHHHHHhhhcCCCChh------hHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHH
Q 035828 517 GRCRDIKSASTVFESCYNCNLC------TWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQ 590 (781)
Q Consensus 517 ~~~g~~~~A~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 590 (781)
.+.|.++.|..-|+.+...++. .+..++. .+ ........+..+...|+...|..
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~-------~~-------------e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL-------IQ-------------EHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh-------HH-------------HHHHHHHHHHHHhcCCchhhHHH
Confidence 5666777776666655432210 1111000 00 00111122233344555555555
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCc
Q 035828 591 IHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGL 670 (781)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 670 (781)
....+++-.+ -++..|..-..+|...|+...|+.=+....+.. ..+..++.-+-..+...|+
T Consensus 177 ~i~~llEi~~-----------------Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 177 MITHLLEIQP-----------------WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHHHhcCc-----------------chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhh
Confidence 5555544222 122345555666777777777776666555421 1223344444555666777
Q ss_pred HHHHHHHHHHhHHHcCCCCCc-c---hHHHH---H------HHhhhcCChHHHHHHHHhC-CCCCCc-----chHHHHHH
Q 035828 671 VDEGLQYYNNMLEEYDVRPET-E---HHVCI---V------DMLGRSGKLQEAYEFIKNL-PIQPKP-----GVWGAMLS 731 (781)
Q Consensus 671 ~~~a~~~~~~~~~~~~~~p~~-~---~~~~l---~------~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~ 731 (781)
.+.++...++.+ .+.|+. . .|..| . ....+.++|.++++--++. +..|.. ..+..+..
T Consensus 239 ~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 239 AENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 777777666654 556762 2 22221 1 1234455666666555543 444441 12333444
Q ss_pred HHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 732 ACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
.+...|++.+|++.-.+++..+|+|..++...+.+|.....+++|+.
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44556778888888888888888888888888888777777777765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.6e-06 Score=68.79 Aligned_cols=89 Identities=9% Similarity=-0.027 Sum_probs=76.2
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
.....+...+...|++++|.++|+-+ ...| +...|-.|.-.+...|++++|+..|.++..++|++|.++.++|..|..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 45556777788999999999999876 4555 555788888888889999999999999999999999999999999999
Q ss_pred cCChhhHHhhc
Q 035828 770 LGRWKDAVEIG 780 (781)
Q Consensus 770 ~g~~~~A~~l~ 780 (781)
.|+.++|++-+
T Consensus 116 lG~~~~A~~aF 126 (157)
T PRK15363 116 CDNVCYAIKAL 126 (157)
T ss_pred cCCHHHHHHHH
Confidence 99999998643
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.3e-06 Score=81.12 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=87.5
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACS 734 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 734 (781)
....|+..+...++++.|.++++++.+. .|+ ....+++.+...++-.+|++++.+. ...| +...+...+..|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455566666677888888888887654 354 3445777777777778888887766 3333 4445565666677
Q ss_pred hcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 735 HHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.|+++.|..+++++.+..|++...|..|+.+|.+.|++++|+-.+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8888888888888888888888888888888888888888887543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-05 Score=76.42 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=90.5
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTK 740 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 740 (781)
.....|+.++|+..++.+++. .|+ +.......+.+.+.|+.++|.+.++++ ...|+ ...+-.+.+++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 445568888999999888755 666 455666778888999999999988887 56676 556677888888899999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 741 MGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
+|+..++.....+|++|..|..|+.+|..+|+-.+|..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 99999999988899999999999999888888877764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.4e-06 Score=72.18 Aligned_cols=116 Identities=13% Similarity=0.180 Sum_probs=91.0
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-
Q 035828 641 ELFHEMCNSGIRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL- 717 (781)
Q Consensus 641 ~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 717 (781)
+.+++... ..|+. .....+...+...|++++|.+.++.+... .|+ ...+..+...+...|++++|...+++.
T Consensus 4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665 45543 45666777788899999999999998754 454 678888999999999999999998876
Q ss_pred CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHH
Q 035828 718 PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 718 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
...| +...+..+...+...|+++.|...++++.++.|+++....
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 4444 4567777888888999999999999999999998877443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.5e-05 Score=83.22 Aligned_cols=200 Identities=17% Similarity=0.237 Sum_probs=164.7
Q ss_pred CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHH-hCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHH
Q 035828 564 EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFH-LGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIE 641 (781)
Q Consensus 564 ~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 641 (781)
-..|| ...|...|......++.+.|+++.++.+. -+++-...-. ..|.++++.....|.-+...+
T Consensus 1452 rssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKL-------------NiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1452 RSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKL-------------NIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred hcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHH-------------HHHHHHHhHHHhhCcHHHHHH
Confidence 34564 45677778888899999999999998765 3444333322 257788887778888888999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCC
Q 035828 642 LFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQ 720 (781)
Q Consensus 642 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 720 (781)
+|++..+ +.-....|..|...|.+.+..++|.++++.|.++++ -....|..+++.+.++++-+.|..+++++ ..-
T Consensus 1519 VFeRAcq--ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1519 VFERACQ--YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHH--hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 9999987 333345788999999999999999999999999876 44677999999999999999999999876 333
Q ss_pred C---CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 721 P---KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 721 p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
| .......+++...+.||.+.+..+|+..+.-.|.....|.-++..-.++|+.+.++.|+
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 3 45677888888899999999999999999999999999999999999999999888875
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0022 Score=75.05 Aligned_cols=325 Identities=12% Similarity=-0.026 Sum_probs=179.4
Q ss_pred hcCCHHHHHHHHHhhcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-----CCChh--hHHHHHHHhcCc
Q 035828 415 NCGDLVAAFSLLQRISHN---SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNA-----SPDSV--TLVNVISACGNL 484 (781)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-----~p~~~--~~~~ll~~~~~~ 484 (781)
..|+++.+..++..+... .+..........+...|++++|...+......-.. .|... ....+-..+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 345555555555444111 12222223334445566777776666665432100 01111 111111224456
Q ss_pred cchHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHhcCChHHHHHHhhhcCC-------CCh--hhHHHHHHHHHhCC
Q 035828 485 ELAFEGKSLHGLALKSLMGLDT----RVQNALITMYGRCRDIKSASTVFESCYN-------CNL--CTWNCMISAFSQNK 551 (781)
Q Consensus 485 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~l~~~~~~~~ 551 (781)
|+++.+...++.....-...+. ...+.+...+...|++++|...+++... +.. ..+..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 6777777777665542111111 2234445556677888888777765541 111 23444556677788
Q ss_pred ChhHHHHHHhhc-----CC-C---C-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCC--CCCchHHHHHHHhhhcCCC
Q 035828 552 AEVRALELFRHL-----EF-E---P-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGF--QENSFISSALLDMYSNCKS 619 (781)
Q Consensus 552 ~~~~A~~~~~~~-----~~-~---p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 619 (781)
++++|...+++. .. . | ....+..+...+...|+++.|...+.......- .+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~-------------- 611 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ-------------- 611 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH--------------
Confidence 888888887765 11 1 1 122233344455667999999888877655321 11111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC--CHHH-H-HHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcc-
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSG--IRP--TKSS-V-ISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETE- 692 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p--~~~~-~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~- 692 (781)
...+..+...+...|++++|.+.+++..... ... .... . ...+..+...|+.+.|..++...... . .....
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~ 689 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-E-FANNHF 689 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-C-Cccchh
Confidence 1134456667778899999999888875421 111 1101 0 11123344578999999988775421 1 11111
Q ss_pred ---hHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 693 ---HHVCIVDMLGRSGKLQEAYEFIKNL-------PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 693 ---~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
.+..+..++...|++++|...++++ +..+. ..+...+..++...|+.++|...+++++++...
T Consensus 690 ~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 690 LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 1346777888999999999888766 11111 234555666778899999999999999988744
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.6e-05 Score=77.00 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=91.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.+..|-..|-..|++++|++.|+..+. ++| |...||-|...+....+.++|+..|++.+ .+.|+ +.....|.-
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRYNLGI 506 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeehhhhh
Confidence 455666667788999999999999988 677 55689999999999999999999999987 56998 577778888
Q ss_pred HhhhcCChHHHHHHHHhC-C-----------CCCCcchHHHHHHHHHhcCCcHHHHHH
Q 035828 700 MLGRSGKLQEAYEFIKNL-P-----------IQPKPGVWGAMLSACSHHGDTKMGKQV 745 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~ 745 (781)
.|...|.|+||.+.|-++ . ..++..+|.+|-.++...++.|.+.++
T Consensus 507 S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 999999999998865443 1 111234777777667667777655444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0063 Score=59.56 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=71.3
Q ss_pred HhcccCc-HHHHHHHHHHhHHHcCCCCC-cchHHHHH----HHhhh---cCChHHH---HHHHHhCCCCCCc----chHH
Q 035828 664 ACSHSGL-VDEGLQYYNNMLEEYDVRPE-TEHHVCIV----DMLGR---SGKLQEA---YEFIKNLPIQPKP----GVWG 727 (781)
Q Consensus 664 ~~~~~~~-~~~a~~~~~~~~~~~~~~p~-~~~~~~l~----~~~~~---~g~~~~A---~~~~~~~~~~p~~----~~~~ 727 (781)
-+.+.|. -++|+++++.+++ +.|. ..+-+.+. ..|.. ...+.+- ...+++.+++|-. ...|
T Consensus 388 ~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 3445554 6788888888764 3443 22222211 11111 1112222 2335566777643 3456
Q ss_pred HHHHH--HHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 728 AMLSA--CSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 728 ~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+.++ +..+|++.++...-.=+.+..| +|.+|.++|.....+++++||-+.+
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66665 4578999999888877778888 8999999999999999999998765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00042 Score=62.55 Aligned_cols=125 Identities=13% Similarity=0.099 Sum_probs=79.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc----cCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH----SGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR 703 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 703 (781)
..+.+..+++-|...+++|++ --+..|.+.|..++.+ .+....|.-+|++|-++ .+|++.+.+-.+.+...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~ 219 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQ 219 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHH
Confidence 344566777777777777774 3345567767666654 23567777777777542 56677777777777777
Q ss_pred cCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcC-CcHHHHHHHHHHhccCCCCC
Q 035828 704 SGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHG-DTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 704 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~ 757 (781)
.|++++|..+++++ +...++.+...++-.....| +.+--.+.+.++....|+.+
T Consensus 220 ~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 220 LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 77788777777766 23334445555555445555 33445556666666667655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0007 Score=66.86 Aligned_cols=113 Identities=14% Similarity=0.031 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 700 (781)
.+....+.+.+.++..+|.+.++++.. ..|+ ....-.+..++.+.|++.+|..+++..... .+-++..|..|.++
T Consensus 342 ~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--~p~dp~~w~~LAqa 417 (484)
T COG4783 342 YLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--DPEDPNGWDLLAQA 417 (484)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCCchHHHHHHHH
Confidence 355556667777888888888887777 5665 445556667777778888888887776543 23346777888888
Q ss_pred hhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 701 LGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
|.+.|+..+|....-+ .+.-.|+++.|+..+..+.+..
T Consensus 418 y~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 418 YAELGNRAEALLARAE---------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHhCchHHHHHHHHH---------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 8888877776654433 3556777778877777777665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0005 Score=62.07 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=110.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh---
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR--- 703 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 703 (781)
...|+..+++++|++...... ..+.... =...+.+..+.+-|.+.+++|.+- -+..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhc
Confidence 345788999999999887722 2222222 233456677889999999999632 234567767766643
Q ss_pred -cCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHH
Q 035828 704 -SGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 704 -~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
.+.+.+|.-+|+++ +.+|+..+.+....++...|++++|..+++.++..++++|.++.+++..-...|+-.++.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 45789999999999 478888899999888899999999999999999999999999999999988888876554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.7e-05 Score=67.18 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=52.7
Q ss_pred cCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCC-CCCCc----chHHHHHHHHHhcCCcHH
Q 035828 668 SGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLP-IQPKP----GVWGAMLSACSHHGDTKM 741 (781)
Q Consensus 668 ~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~ 741 (781)
.++...+...++.+.+.++-.|- ......+...+...|++++|...|+... ..|+. ...-.+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44555555555555544211110 1223334455555555555555555541 11221 122334444455556666
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 742 GKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 742 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|...++.. ...+-.+..+..+|.+|.+.|++++|++.|
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 65555442 222334445555666666666666666544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.6e-05 Score=81.86 Aligned_cols=127 Identities=14% Similarity=0.108 Sum_probs=112.4
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCc-chHH
Q 035828 651 IRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKP-GVWG 727 (781)
Q Consensus 651 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~ 727 (781)
+..+...+..|.......|+.++|..+++... ...|+ ......++..+.+.+++++|...+++. ...|+. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 55668889999999999999999999999997 45898 478888999999999999999999887 556654 4567
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 728 AMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+..++.+.|++++|..+|+++...+|+++.++..++.++...|+.++|...+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777888999999999999999999999999999999999999999998764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00011 Score=65.58 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=34.3
Q ss_pred hcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhH
Q 035828 703 RSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDA 776 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 776 (781)
..|++++|+++++.. .-.| |..++..-+......|+...|++-+.+-++..|.|+.+|..|+.+|...|++++|
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHH
Confidence 344455555554443 1122 3333444444444444444555555555555555555555555555555554444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.6e-06 Score=51.28 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=32.7
Q ss_pred eehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCc
Q 035828 140 VSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADN 174 (781)
Q Consensus 140 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 174 (781)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00013 Score=63.01 Aligned_cols=126 Identities=15% Similarity=0.154 Sum_probs=94.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT---KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVC 696 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 696 (781)
.|..++..+ ..++...+.+.++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|. ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344555555 4789999999999998852 222 234444557788899999999999999876 32232 235556
Q ss_pred HHHHhhhcCChHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 697 IVDMLGRSGKLQEAYEFIKNLPI-QPKPGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
|...+...|++++|+..++.... ...+..+......+.+.|++++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88999999999999999988632 2345567778888999999999999999863
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.3e-05 Score=64.28 Aligned_cols=87 Identities=18% Similarity=0.326 Sum_probs=43.0
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
....++..+...|++++|.+.++.+ ...| +...+..+...+.+.|+++.|...++++.+.+|+++..+..++.+|...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3444444455555555555555443 2222 3334444444444555555555555555555555555555555555555
Q ss_pred CChhhHHhh
Q 035828 771 GRWKDAVEI 779 (781)
Q Consensus 771 g~~~~A~~l 779 (781)
|++++|.+.
T Consensus 99 g~~~~A~~~ 107 (135)
T TIGR02552 99 GEPESALKA 107 (135)
T ss_pred CCHHHHHHH
Confidence 555555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.7e-06 Score=50.26 Aligned_cols=33 Identities=36% Similarity=0.621 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT 654 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 654 (781)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.4e-06 Score=49.85 Aligned_cols=33 Identities=24% Similarity=0.514 Sum_probs=31.0
Q ss_pred eehHHHHHHHhhCCChhhHHHHHHHHhhcCCCC
Q 035828 140 VSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQA 172 (781)
Q Consensus 140 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 172 (781)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00058 Score=61.16 Aligned_cols=145 Identities=20% Similarity=0.276 Sum_probs=96.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLL-SACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.|..++-+....|+.+.|...++++... + |.+.-...|- .-+...|++++|.++++.++++ +|+ ..+|..-+-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHH
Confidence 3455555566677777788887777664 2 4433222221 2233467778888888877755 454 456666666
Q ss_pred HhhhcCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 035828 700 MLGRSGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG 771 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 771 (781)
..-..|+--+|++-+.+. .+..|...|..+...|...|++++|.--+++++-..|-++-.+..|+..++-.|
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 666667766777766655 355677777777777778888888888888888888888877777777766554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.025 Score=56.86 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=104.1
Q ss_pred hhHHHHHHhhc----CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCC-CchHHHHHHHhhhcCCChhhHHHHH
Q 035828 553 EVRALELFRHL----EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQE-NSFISSALLDMYSNCKSNAAWSSMI 627 (781)
Q Consensus 553 ~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~li 627 (781)
.+...+.+++. ..+|+ .+|..++....+..-++.|+.+|.+..+.+..+ .+.+++++++-||.
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs----------- 414 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS----------- 414 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-----------
Confidence 45555666666 24454 356777888888888999999999999888777 55655666665543
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcC
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSG 705 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 705 (781)
++..-|.++|+-=... ..-+..-....+.-+.+.++-..|..+|++.+.. ++.|+ ..+|..+++.-..-|
T Consensus 415 ------kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 415 ------KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred ------CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcc
Confidence 6778888888864442 2223333444556667778888899999999887 77776 478999998888899
Q ss_pred ChHHHHHHHHhC
Q 035828 706 KLQEAYEFIKNL 717 (781)
Q Consensus 706 ~~~~A~~~~~~~ 717 (781)
++..+.++-++.
T Consensus 487 dL~si~~lekR~ 498 (656)
T KOG1914|consen 487 DLNSILKLEKRR 498 (656)
T ss_pred cHHHHHHHHHHH
Confidence 999888886654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=48.61 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
.+|+++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 378888888888888888888888888888877
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00026 Score=77.56 Aligned_cols=194 Identities=11% Similarity=0.147 Sum_probs=120.9
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHH-HhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhh
Q 035828 537 LCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILS-ACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMY 614 (781)
Q Consensus 537 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 614 (781)
...|..|+..+...+++++|.++.++. ...|+...+-.+.. .+...++...+..+
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------------- 87 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL----------------------- 87 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------------
Confidence 345666666666666666666666655 45565543332222 22333333333222
Q ss_pred hcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cch
Q 035828 615 SNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEH 693 (781)
Q Consensus 615 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~ 693 (781)
.++.......++..+..+...|.+ ..-+...+..+..+|.+.|+.++|..+++++++- .|+ +.+
T Consensus 88 ----------~~l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D~~n~~a 152 (906)
T PRK14720 88 ----------NLIDSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA---DRDNPEI 152 (906)
T ss_pred ----------hhhhhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CcccHHH
Confidence 122223334455444455555555 2334457777788888888888888888888744 565 678
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHH--------H-
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISL--------S- 764 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--------~- 764 (781)
.+.++..|... ++++|.+++.++ +..+...+++..+..+|+++...+|++...+..+ +
T Consensus 153 LNn~AY~~ae~-dL~KA~~m~~KA------------V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 153 VKKLATSYEEE-DKEKAITYLKKA------------IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHHHh-hHHHHHHHHHHH------------HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc
Confidence 88888888877 888888887664 2225566788888888888888888877764332 2
Q ss_pred -----------HHHHhcCChhhHHhhcC
Q 035828 765 -----------NMYVALGRWKDAVEIGK 781 (781)
Q Consensus 765 -----------~~~~~~g~~~~A~~l~~ 781 (781)
.-|.+.++|+++++++|
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 34666678888888765
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0011 Score=64.90 Aligned_cols=171 Identities=10% Similarity=0.084 Sum_probs=124.8
Q ss_pred HhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCC-CH
Q 035828 578 ACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHG-KGWEAIELFHEMCNSGIRP-TK 655 (781)
Q Consensus 578 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p-~~ 655 (781)
.+...+..++|....+.+++..... ..+|+..-..+...| +++++++.++++.+. .| +.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~-----------------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npkny 106 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGN-----------------YTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNY 106 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchh-----------------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcch
Confidence 3445667788888888877654322 125666556666667 679999999999984 44 33
Q ss_pred HHHHHHHHHhcccCc--HHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHH
Q 035828 656 SSVISLLSACSHSGL--VDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAML 730 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 730 (781)
.+|+.....+.+.|+ .++++.+++++++. .|. ..+|.....++...|++++|++.++++ ...| +...|+...
T Consensus 107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~ 183 (320)
T PLN02789 107 QIWHHRRWLAEKLGPDAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRY 183 (320)
T ss_pred HHhHHHHHHHHHcCchhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHH
Confidence 456655444445554 36789999888754 675 578888889999999999999999987 4344 566777777
Q ss_pred HHHHhc---CCc----HHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 731 SACSHH---GDT----KMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 731 ~~~~~~---g~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
..+.+. |.. +.++....++++.+|++..++..++.+|...
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 666554 223 5788888999999999999999999999883
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=61.21 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=70.4
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAML 730 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 730 (781)
++..+...+...|++++|.+.++.+.+...-.|. ...+..++.++.+.|++++|.+.++++ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455556666777777777777777655211111 245666777788888888888877765 22333 34566677
Q ss_pred HHHHhcCCcHHHHHHHHHHhccCCCCCchHH
Q 035828 731 SACSHHGDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
..+.+.|+.+.|...++++.+..|+++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777888888888888888888888765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0011 Score=72.74 Aligned_cols=146 Identities=10% Similarity=0.097 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML 701 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 701 (781)
++..+..+|.+.|+.++|...|+++.+.. +-|....|.+...+... +.++|.+++.+.+..+=..-...-...+..-+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 34445555666666666666666666632 22444566666666555 66666666666554410000000011111111
Q ss_pred hh--cCChHHHHHHHHhC----CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 702 GR--SGKLQEAYEFIKNL----PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 702 ~~--~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
+. ..+.+.-..+.+++ +..--+.++..+...|...++++++..+++.+++.+|.|..+...++..|..
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 11 11222222222222 2222334455555666677899999999999999999999999999888773
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.2e-06 Score=63.60 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+-.+..++.+.|++++|..++++ .+.+|.++.....+|.+|.+.|++++|++++
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33344444455555555555555 4444444445555555555555555555543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.062 Score=57.67 Aligned_cols=465 Identities=12% Similarity=0.043 Sum_probs=210.6
Q ss_pred ccCcccchhHHHHHHHHhcCCCCcchhhhHHHHh--hccCChhhHHHHhccCC---CCCeeehHHHHHHHhhCCChhhHH
Q 035828 85 QMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMY--AKCGDLNSSECTFSGMH---CADTVSWNTIMSGCLHNNYPEKCL 159 (781)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~ 159 (781)
..+++..|..-...+.+.. |+. .|...+.++ .|.|+.++|..+++... ..|..|...+-..|-..++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 3455666666666665542 322 233334433 36677777777766553 235666666777777777777777
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC
Q 035828 160 LYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTC 239 (781)
Q Consensus 160 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 239 (781)
.+|++.... -|+..-...+..++.+.+++..-.+.--.+.+.-+. + ...+=+++..+... .+.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~--~yyfWsV~Slilqs------------~~~ 160 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-R--AYYFWSVISLILQS------------IFS 160 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-c--cchHHHHHHHHHHh------------ccC
Confidence 777766543 344444555555555555544433333333322111 1 11111122211110 000
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHH-HHHhcCCCChHHHHH
Q 035828 240 KDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGY-AIRRLLGYDLLMMNS 318 (781)
Q Consensus 240 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ 318 (781)
++.... .+ -..-|.+.++.+.+.+|-.-+..-...-+..+...+.+++|..++.. ..+.-..-+...-+.
T Consensus 161 ~~~~~~-~i--------~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~ 231 (932)
T KOG2053|consen 161 ENELLD-PI--------LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENK 231 (932)
T ss_pred Cccccc-ch--------hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHH
Confidence 100000 00 01223444555554442111111222222334456667777777733 333333334455556
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhc
Q 035828 319 LMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLG 398 (781)
Q Consensus 319 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 398 (781)
-+..+...+++.+..++-.++.. ++...|...+...++.+......|-....+. .+.++...+........
T Consensus 232 ~~dllk~l~~w~~l~~l~~~Ll~-k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~-------~~~l~~~~ek~~~~i~~- 302 (932)
T KOG2053|consen 232 KLDLLKLLNRWQELFELSSRLLE-KGNDDYKIYTDSVFKLLELLNKEPAEAAHSL-------SKSLDECIEKAQKNIGS- 302 (932)
T ss_pred HHHHHHHhcChHHHHHHHHHHHH-hCCcchHHHHHHHHHHHHhcccccchhhhhh-------hhhHHHHHHHHHHhhcc-
Confidence 66777777777777777666655 2122266666665555555444433222111 11112222211111111
Q ss_pred CCCchhHHHHHHHHH---HhcCCHHHHHHH-HHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChh--
Q 035828 399 FSNNTIGVNALMHMY---INCGDLVAAFSL-LQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSV-- 472 (781)
Q Consensus 399 ~~~~~~~~~~li~~~---~~~~~~~~a~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-- 472 (781)
-....|-+-+.+. ..-|+.+++... |+.....| .|..=+..|...=..+.-..++....... ++..
T Consensus 303 --~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~---~~~s~~ 374 (932)
T KOG2053|consen 303 --KSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD---DDSSGD 374 (932)
T ss_pred --cccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC---Ccchhh
Confidence 0111222222222 234666665433 33443332 11111222222222222233333332211 1111
Q ss_pred -------hHHHHHH-HhcCcc--chHHHHHHHHHHH---HhcC------CCC---------hHHHHHHHHHHHhcCChH-
Q 035828 473 -------TLVNVIS-ACGNLE--LAFEGKSLHGLAL---KSLM------GLD---------TRVQNALITMYGRCRDIK- 523 (781)
Q Consensus 473 -------~~~~ll~-~~~~~~--~~~~a~~~~~~~~---~~~~------~~~---------~~~~~~li~~~~~~g~~~- 523 (781)
+....+. .+.... +.+....++.++. .+|. -|+ .-+.+.|++.+.+.++..
T Consensus 375 ~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~ 454 (932)
T KOG2053|consen 375 EKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTD 454 (932)
T ss_pred HHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 1111111 111111 1222333332222 1221 122 224467888888888766
Q ss_pred --HHHHHhhhcCCC---ChhhHHHHHHHHHhCCChhHHHHHHhhc---CCCCCHhHHHHHHHHhcccCchHHHHHHHHHH
Q 035828 524 --SASTVFESCYNC---NLCTWNCMISAFSQNKAEVRALELFRHL---EFEPNEISIVSILSACTQLGVLRHGKQIHGHV 595 (781)
Q Consensus 524 --~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 595 (781)
+|+-+++..... |..+--.+|..|+--|-+..|.++|..+ .++-|...|.. ..-+...|++..+...++..
T Consensus 455 l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 455 LFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHH
Confidence 455555555433 3445556788899999999999999998 26666554432 33445556666666665544
Q ss_pred H
Q 035828 596 F 596 (781)
Q Consensus 596 ~ 596 (781)
.
T Consensus 534 l 534 (932)
T KOG2053|consen 534 L 534 (932)
T ss_pred H
Confidence 3
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.7e-05 Score=68.03 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=73.7
Q ss_pred hcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHH
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKM 741 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 741 (781)
+.+.+++.+|+..|.+.+ .+.|. ...|..-..+|.+-|.++.|++-.+.. .+.|. ...|.+|..++...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 445677777777777776 44665 456666677777777777777665554 55554 4467777777777777777
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 742 GKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 742 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
|++.|+++++++|++.....+|.++-.+.+..+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 777777777777777777777777666555443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.4e-05 Score=61.58 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=75.3
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC---CchHHHH
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN---VGYYISL 763 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l 763 (781)
.++..++..+.+.|++++|.+.++++ ...|+ ...+..+...+.+.|+++.|...++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45777888999999999999999887 33443 2356668888999999999999999999998875 5679999
Q ss_pred HHHHHhcCChhhHHhhc
Q 035828 764 SNMYVALGRWKDAVEIG 780 (781)
Q Consensus 764 ~~~~~~~g~~~~A~~l~ 780 (781)
+.+|.+.|++++|++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~ 99 (119)
T TIGR02795 83 GMSLQELGDKEKAKATL 99 (119)
T ss_pred HHHHHHhCChHHHHHHH
Confidence 99999999999998865
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.4e-05 Score=59.34 Aligned_cols=82 Identities=22% Similarity=0.414 Sum_probs=35.6
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
++..+...|++++|++.+++. ...|+ ...+..+...+...|++++|...++++.+..|.++..+..++.++...|+++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 334444444444444444433 22222 1233333444444444444444444444444444444444444444444444
Q ss_pred hHHh
Q 035828 775 DAVE 778 (781)
Q Consensus 775 ~A~~ 778 (781)
+|.+
T Consensus 86 ~a~~ 89 (100)
T cd00189 86 EALE 89 (100)
T ss_pred HHHH
Confidence 4443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.2e-05 Score=55.76 Aligned_cols=59 Identities=20% Similarity=0.310 Sum_probs=27.3
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 698 VDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
...+.+.|++++|++.++++ ...| +...+..+...+...|++++|..+++++.+..|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34444555555555555544 2223 23344444444455555555555555555555544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.024 Score=54.45 Aligned_cols=281 Identities=14% Similarity=0.088 Sum_probs=177.7
Q ss_pred HHHHHHHh--cCccchHHHHHHHHHHHHhcCCCChHHHHHHHHH--HHhcCChHHHHHHhhhcCC-CCh--hhHHHHHHH
Q 035828 474 LVNVISAC--GNLELAFEGKSLHGLALKSLMGLDTRVQNALITM--YGRCRDIKSASTVFESCYN-CNL--CTWNCMISA 546 (781)
Q Consensus 474 ~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~-~~~--~~~~~l~~~ 546 (781)
|..|-.++ ...|+-..|.+.-.+..+. +..|..-.-.|+.+ -.-.|+.+.|.+-|+.|.. |.. .-...|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 44444443 3466777777765544321 22343333334433 2346999999999999873 322 233444444
Q ss_pred HHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCchHHHHHHHHHHHH-hCCCCCchHHHHHHHhhhcCCChhhH
Q 035828 547 FSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGVLRHGKQIHGHVFH-LGFQENSFISSALLDMYSNCKSNAAW 623 (781)
Q Consensus 547 ~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~ 623 (781)
-.+.|..+.|..+-.+. +..|. .......+...+..|+++.|.++++.-.. .-+.++..- ..-
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae--------------R~r 229 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE--------------RSR 229 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH--------------HHH
Confidence 56788888888888888 66665 45677888999999999999999877655 334444321 012
Q ss_pred HHHHHHHH---hcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHH
Q 035828 624 SSMISAYG---YHGKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVD 699 (781)
Q Consensus 624 ~~li~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 699 (781)
..|+.+-+ -..+...|...-.+..+ +.||.. .-..-.+++.+.|+..++-.+++.+-+. .|.+.+....
T Consensus 230 AvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY-- 302 (531)
T COG3898 230 AVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY-- 302 (531)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--
Confidence 22322221 12345555555444444 777765 3444457888899999999999998654 6666544322
Q ss_pred HhhhcCChHHHHHHHHhC----CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CCh
Q 035828 700 MLGRSGKLQEAYEFIKNL----PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL-GRW 773 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~ 773 (781)
.+.+.|+. +++-+++. .++|+ ..+.-.+..+....|++..|..-.+.+.+..|. ..+|.+|+.+-... |+.
T Consensus 303 ~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDq 379 (531)
T COG3898 303 VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQ 379 (531)
T ss_pred HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCch
Confidence 23455543 33333332 24554 446667777788899999999999999888887 45788888888777 888
Q ss_pred hhHHhh
Q 035828 774 KDAVEI 779 (781)
Q Consensus 774 ~~A~~l 779 (781)
.++++.
T Consensus 380 g~vR~w 385 (531)
T COG3898 380 GKVRQW 385 (531)
T ss_pred HHHHHH
Confidence 887653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.1e-05 Score=46.45 Aligned_cols=33 Identities=27% Similarity=0.579 Sum_probs=31.2
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 746 AELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 746 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
++++++++|+++.+|..||.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999974
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0013 Score=65.84 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=81.3
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035828 574 SILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 574 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
+|+..+...++++.|..+++++.+.. |+ ....++..+...++-.+|++++++.... .+-
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~ 232 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE------------------VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQ 232 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCC
Confidence 34444455555666666666665544 22 1233455556667778888888887753 223
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCChHHHHHHHHhCC
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKLQEAYEFIKNLP 718 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (781)
|...+..-...|...++.+.|+++.+++.+ ..|+. .+|..|+.+|.+.|++++|+-.++.++
T Consensus 233 d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 233 DSELLNLQAEFLLSKKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 455555556667788888888888888874 47764 688888888888888888888887774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00033 Score=70.47 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=64.0
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTK 740 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 740 (781)
.+...|++++|++.|+++++. .|+ ...|..+..+|.+.|++++|+..++++ ...| +...+..+..++...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344556666666666666543 444 355666666666677777776666655 3344 3445566666666677777
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 741 MGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
.|+..++++++++|+++.....+..+..+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 77777777777777777666666655433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.2e-05 Score=45.26 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=27.2
Q ss_pred eehHHHHHHHhhCCChhhHHHHHHHHhhcCC
Q 035828 140 VSWNTIMSGCLHNNYPEKCLLYFREMGWSGE 170 (781)
Q Consensus 140 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 170 (781)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.4e-05 Score=56.49 Aligned_cols=59 Identities=24% Similarity=0.381 Sum_probs=50.5
Q ss_pred CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-ChhhHHhhc
Q 035828 722 KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG-RWKDAVEIG 780 (781)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~l~ 780 (781)
++..|..+...+...|++++|+..++++++.+|+++.++..+|.+|...| ++++|++-+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~ 61 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDF 61 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 34567788888888999999999999999999999999999999999998 688888754
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00074 Score=70.98 Aligned_cols=137 Identities=15% Similarity=0.086 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHh--c---CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhccc--------CcHHHHHHHHHHhHHHcC
Q 035828 621 AAWSSMISAYGY--H---GKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHS--------GLVDEGLQYYNNMLEEYD 686 (781)
Q Consensus 621 ~~~~~li~~~~~--~---~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~ 686 (781)
.+|...+.+... . +..+.|+++|++..+ ..|+.. .|..+..++... .++..+.+..++......
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence 355555555433 2 347789999999998 678753 444433332211 123444555544332211
Q ss_pred CCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch
Q 035828 687 VRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 687 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
...++..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.+|..
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 2234567887877777889999999999987 677888889999999999999999999999999999998853
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.5e-05 Score=55.68 Aligned_cols=64 Identities=22% Similarity=0.355 Sum_probs=39.0
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 702 GRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
.+.|++++|++.++++ ...| +...+..++..+.+.|++++|..+++++....|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3566677777766665 2333 44455566666666777777777777777777766655555543
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00025 Score=54.83 Aligned_cols=80 Identities=13% Similarity=0.097 Sum_probs=69.4
Q ss_pred hhHHHHHHHhcCCchhhHHHHHHHHhcCC-CCChhhHHHHHHHHhccC--------cccchhHHHHHHHHhcCCCCcchh
Q 035828 41 WNAMITACVENRCVVMGLHFFGEMVEEGI-RFDSTTLLIIVSALTQMN--------CLKQGRVVHCLSIKAGMIADSSLC 111 (781)
Q Consensus 41 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 111 (781)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. ++...+.+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34567777788999999999999999999 899999999999998664 355678899999999999999999
Q ss_pred hhHHHHhhc
Q 035828 112 NVFVNMYAK 120 (781)
Q Consensus 112 ~~li~~~~~ 120 (781)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.7e-05 Score=57.08 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=36.3
Q ss_pred cCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHH
Q 035828 633 HGKGWEAIELFHEMCNSGI-RPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 710 (781)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..++++ . ...|. ......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3455555555555555221 11233333355555555555555555555 1 12222 23333445555555555555
Q ss_pred HHHHH
Q 035828 711 YEFIK 715 (781)
Q Consensus 711 ~~~~~ 715 (781)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0011 Score=59.19 Aligned_cols=113 Identities=18% Similarity=0.249 Sum_probs=64.9
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSAC 733 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 733 (781)
.+..+...+...|++++|...+++.++...-.++ ...+..++.++.+.|++++|+..++++ ...|+ ...+..+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555555555666666666666666543111111 245556666666666666666666554 33332 33344444445
Q ss_pred HhcCC--------------cHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 734 SHHGD--------------TKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 734 ~~~g~--------------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
...|+ +++|.+.++++.+.+|++ +..++..+...|+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 44444 577888888888888887 5555555555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0001 Score=53.10 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=42.4
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+...+...|++++|...++++++..|+++.++..+|.++.++|++++|++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 54 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556778888888888888888888888888888888888888888888764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.1e-05 Score=43.77 Aligned_cols=30 Identities=43% Similarity=0.633 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGI 651 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 651 (781)
+|+++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888899999998888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00022 Score=71.77 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=74.5
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
-+..+...|++++|++.++++ ...| +...+..+..++.+.|+++.|+..++++++++|+++.+++.+|.+|...|+++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 456677899999999999987 4555 45577888888999999999999999999999999999999999999999999
Q ss_pred hHHhhc
Q 035828 775 DAVEIG 780 (781)
Q Consensus 775 ~A~~l~ 780 (781)
+|++.+
T Consensus 88 eA~~~~ 93 (356)
T PLN03088 88 TAKAAL 93 (356)
T ss_pred HHHHHH
Confidence 999865
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.099 Score=51.32 Aligned_cols=109 Identities=19% Similarity=0.099 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML 701 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 701 (781)
+.+..|.-+...|+...|.++-.+.+ .||..-|-..+.+++..++|++-.++... +-++.-|..++..+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHH
Confidence 34444555555555555555544443 35555555555566555565554443221 12234455555555
Q ss_pred hhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHH
Q 035828 702 GRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAEL 748 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (781)
.+.|+..+|..++.+++ ...-+..|.+.|++.+|.+..-+
T Consensus 248 ~~~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 55565555555555531 13334444555555555554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00024 Score=63.26 Aligned_cols=89 Identities=8% Similarity=-0.104 Sum_probs=68.4
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
...|..++..+...|++++|+..++++ ...|+ ..++..+...+...|++++|...++++.++.|..+..+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 355666777777788888888887766 23332 2367778888888999999999999999999998888888888
Q ss_pred HHH-------hcCChhhHHhh
Q 035828 766 MYV-------ALGRWKDAVEI 779 (781)
Q Consensus 766 ~~~-------~~g~~~~A~~l 779 (781)
+|. +.|++++|+..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHH
Confidence 888 77887766543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0002 Score=66.07 Aligned_cols=84 Identities=23% Similarity=0.302 Sum_probs=74.4
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 698 VDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
..-+.+.++|.+|++.+.++ .+.| |++.|..=..+|.+.|.++.|++-.+.++.++|....+|..||.+|..+|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45567889999999999887 6666 566677778889999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 035828 776 AVEIGK 781 (781)
Q Consensus 776 A~~l~~ 781 (781)
|++-+|
T Consensus 168 A~~ayk 173 (304)
T KOG0553|consen 168 AIEAYK 173 (304)
T ss_pred HHHHHH
Confidence 998653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00084 Score=56.70 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=56.6
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRW 773 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 773 (781)
....-+...|++++|..+|+-+ -..| +...|..|...+...|++++|+..|..+..++++||.+.++.|..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444456777777777777654 2222 3445666666666677777777777777777777777777777777777777
Q ss_pred hhHHhh
Q 035828 774 KDAVEI 779 (781)
Q Consensus 774 ~~A~~l 779 (781)
++|++-
T Consensus 122 ~~A~~~ 127 (165)
T PRK15331 122 AKARQC 127 (165)
T ss_pred HHHHHH
Confidence 777653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00031 Score=62.69 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=71.5
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
...+..+...+...|++++|+..+++. ...|+ ...+..+...+.+.|+++.|...++++.+..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 356788889999999999999999877 33333 3578888888999999999999999999999999999999999
Q ss_pred HHHhcCCh
Q 035828 766 MYVALGRW 773 (781)
Q Consensus 766 ~~~~~g~~ 773 (781)
+|...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 99988873
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.11 Score=50.22 Aligned_cols=241 Identities=13% Similarity=0.170 Sum_probs=144.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCh--hhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHH
Q 035828 447 QNGHFQEAIKTFKSMTQQQNASPDS--VTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKS 524 (781)
Q Consensus 447 ~~~~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 524 (781)
-.|+++.|.+-|+.|... |.. --+..|.-...+.|+.+.|.+.-...-..--. -.....+.+...|..|+|+.
T Consensus 132 ~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred hcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 356666676666666542 221 12222333334556666665555544332211 23455667777777888888
Q ss_pred HHHHhhhcC-----CCChh--hHHHHHHHH---HhCCChhHHHHHHhhc-CCCCCHhH-HHHHHHHhcccCchHHHHHHH
Q 035828 525 ASTVFESCY-----NCNLC--TWNCMISAF---SQNKAEVRALELFRHL-EFEPNEIS-IVSILSACTQLGVLRHGKQIH 592 (781)
Q Consensus 525 A~~~~~~~~-----~~~~~--~~~~l~~~~---~~~~~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~ 592 (781)
|+++++.-. ++++. .-..|+.+- .-..+...|...-.+. .+.||..- ....-.++.+.|++.++-.++
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 887776443 33332 122222221 1123455566555555 57777543 333455778889999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHhcccCc
Q 035828 593 GHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCN-SGIRPT-KSSVISLLSACSHSGL 670 (781)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~g~~p~-~~~~~~l~~~~~~~~~ 670 (781)
+.+.+....|++. .+..+.+.|+ .++.-+++..+ ..++|| ..+...+..+-...|+
T Consensus 287 E~aWK~ePHP~ia--------------------~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e 344 (531)
T COG3898 287 ETAWKAEPHPDIA--------------------LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHhcCCChHHH--------------------HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence 9998888777753 1122334444 44444444432 125664 4466777778888899
Q ss_pred HHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc-CChHHHHHHHHhC
Q 035828 671 VDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS-GKLQEAYEFIKNL 717 (781)
Q Consensus 671 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 717 (781)
+..|..--+... ...|....|..|.+.-... |+-.++..++-+.
T Consensus 345 ~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 345 FSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred hHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 988888777765 4588888888888877544 8999998888766
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=9.8e-05 Score=53.85 Aligned_cols=59 Identities=20% Similarity=0.395 Sum_probs=37.4
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGA 728 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 728 (781)
..|++++|.+.|+++.+. .|+ ...+..++.+|.+.|++++|.++++++ ...|+...+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 456777777777777655 554 456666777777777777777777776 34555443433
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0086 Score=58.40 Aligned_cols=92 Identities=17% Similarity=0.306 Sum_probs=48.5
Q ss_pred Hhccc-CcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCChHHHHHHHHhCC---CC-C----Ccc-hHHHH
Q 035828 664 ACSHS-GLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNLP---IQ-P----KPG-VWGAM 729 (781)
Q Consensus 664 ~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-p----~~~-~~~~l 729 (781)
.|... |++++|.+.|++..+-+...-. ..++..++..+.+.|++++|++++++.. .. | +.. .+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 55555 6777777777766554322222 3455666777777777777777776651 11 1 111 11111
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
+-.+...||...|.+.+++....+|.
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 22334567777777777777777664
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00075 Score=53.32 Aligned_cols=90 Identities=22% Similarity=0.288 Sum_probs=43.1
Q ss_pred HHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCC
Q 035828 662 LSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGD 738 (781)
Q Consensus 662 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 738 (781)
...+...|++++|...++++.+. .|+ ...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 33344445555555555544322 222 234444555555555555555555443 2222 22344455555555566
Q ss_pred cHHHHHHHHHHhccCC
Q 035828 739 TKMGKQVAELLFKLEP 754 (781)
Q Consensus 739 ~~~A~~~~~~~~~~~p 754 (781)
++.|...++++.+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666666555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=53.50 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=54.3
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---cchHH-HHHHHH
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK---PGVWG-AMLSAC 733 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~-~l~~~~ 733 (781)
+..++-..|+.++|+.+|++.+.. |.... ...+..+...|-..|++++|+.++++. ...|+ ..... .+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344555677777777777777665 54443 346666777777777777777777765 22243 22222 223344
Q ss_pred HhcCCcHHHHHHHHHHhc
Q 035828 734 SHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~ 751 (781)
...|+.++|..++-.++.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 566777777777766553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0022 Score=64.45 Aligned_cols=122 Identities=11% Similarity=0.040 Sum_probs=100.4
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-----CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh
Q 035828 397 LGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNS-----DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS 471 (781)
Q Consensus 397 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~ 471 (781)
.+...+......+++......+++++..++.+....| -..|..++|+.|.+.|..+.++.+++.=..-| +-||.
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yG-iF~D~ 138 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYG-IFPDN 138 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcc-cCCCh
Confidence 3455677777788888888888888988888886554 23466799999999999999999999998898 99999
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 035828 472 VTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRC 519 (781)
Q Consensus 472 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 519 (781)
.|++.+|+.+.+.|++..|.++...|..++...+..++.-.+.++.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999988877766766666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0013 Score=61.25 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcC---ChHHHHHHHHhC-CCCCC-cchHH
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSG---KLQEAYEFIKNL-PIQPK-PGVWG 727 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~-~~~~~ 727 (781)
|...|..|..+|...|+.+.|...|.+..+. .|+ +..+..+..++..+. ...++.++|+++ ...|+ +....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4445555555555555555555555555432 332 344444444443222 233444555554 33332 22333
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 728 AMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
-+...+...|++.+|...|+.+++..|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 3334444555555555555555555543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.026 Score=57.76 Aligned_cols=86 Identities=13% Similarity=0.117 Sum_probs=45.6
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCC-CCCCcc-----------
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLP-IQPKPG----------- 724 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~----------- 724 (781)
+...+..-+.+...+..|-++|.+|-+ ..++++.....++|++|..+-++.+ ..|++.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 333333334444455555556555521 2345555566666666666655552 333322
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
-+...-.++-++|+..+|.++++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1222234455778888888888887654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0032 Score=61.03 Aligned_cols=135 Identities=13% Similarity=0.173 Sum_probs=101.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSA-CSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 700 (781)
+|..+++..-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+..++.+ ..+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 68888888999999999999999998643 2233344443333 333577888999999999874 3445778888899
Q ss_pred hhhcCChHHHHHHHHhC-C-CCCC---cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch
Q 035828 701 LGRSGKLQEAYEFIKNL-P-IQPK---PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~-~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
+.+.|+.+.|..+|++. . +.++ ...|..++.--.+.|+.+....+.+++.+..|++...
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999987 3 2332 2489999999999999999999999999998885543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.063 Score=52.38 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-----
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-----TKS-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----- 690 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----- 690 (781)
.+..+...+.+.|++++|+++|++....-... +.. .|...+-++...||.-.|.+.+++.. ...|+
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~---~~~~~F~~s~ 233 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC---SQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG---TTSTTSTTSH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcH
Confidence 35566777888899999999999887643221 121 22333335566789999999988875 33443
Q ss_pred -cchHHHHHHHhhh--cCChHHHHHHHHhC
Q 035828 691 -TEHHVCIVDMLGR--SGKLQEAYEFIKNL 717 (781)
Q Consensus 691 -~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 717 (781)
......|+.++-. ...+++|+.-++.+
T Consensus 234 E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 234 EYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 2355566666633 23455555555555
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0025 Score=49.46 Aligned_cols=80 Identities=13% Similarity=0.008 Sum_probs=67.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHhccc--------chhhhhhHHHHHHHhcCCCChHH
Q 035828 245 WNAIIDGFALNGKFEEAFDLLHEMQLMRSV-EPDIATVVTLISLCADSL--------LLREGRSVHGYAIRRLLGYDLLM 315 (781)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~pd~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 315 (781)
-...|..+...+++.....+|+.+++.| + .|+..+|+.++.+.+++. ..-....+++.|...+++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~-i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNG-ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 3455667777799999999999999998 8 999999999999987543 34457788999999999999999
Q ss_pred HHHHHHHHHh
Q 035828 316 MNSLMDFYSK 325 (781)
Q Consensus 316 ~~~ll~~~~~ 325 (781)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0019 Score=57.06 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=70.5
Q ss_pred CCCCHhHHHHHHHHhc-----ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcC--CChhhHHHHHHHHHhcCChH
Q 035828 565 FEPNEISIVSILSACT-----QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC--KSNAAWSSMISAYGYHGKGW 637 (781)
Q Consensus 565 ~~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~li~~~~~~~~~~ 637 (781)
...+..+|..++..+. +.|.++=....+..|.+.|+..|..+|+.|++.+=+. .....+-++-. -.-.+-+
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~--hyp~Qq~ 120 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM--HYPRQQE 120 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc--cCcHHHH
Confidence 4445556666666553 3466666677778888888888888888888887443 11111111111 1224556
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCc
Q 035828 638 EAIELFHEMCNSGIRPTKSSVISLLSACSHSGL 670 (781)
Q Consensus 638 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 670 (781)
-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 121 c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 121 CAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 689999999999999999999999999977653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0037 Score=62.89 Aligned_cols=103 Identities=13% Similarity=0.086 Sum_probs=57.5
Q ss_pred CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 035828 568 NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMC 647 (781)
Q Consensus 568 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 647 (781)
+...+..++..+....+++.+..++-......-..+.. ..|..++|+.|...|..+++++++..=.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~--------------~~t~ha~vR~~l~~~~~~~~l~~L~n~~ 130 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLL--------------PSTHHALVRQCLELGAEDELLELLKNRL 130 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccccccc--------------CccHHHHHHHHHhcCCHHHHHHHHhChh
Confidence 44555555666666556666665555544431111110 1133456666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 648 NSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 648 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
.-|+-||.+|++.|+..+.+.|++..|.+++..|...
T Consensus 131 ~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 131 QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666665443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00043 Score=51.32 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=46.3
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHH
Q 035828 699 DMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISL 763 (781)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 763 (781)
..|.+.+++++|.+.++.+ ...| ++..+......+...|++++|.+.++++.+..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4567778888888887776 4444 444566667777778888888888888888888777665444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.022 Score=48.66 Aligned_cols=152 Identities=11% Similarity=0.106 Sum_probs=79.6
Q ss_pred HHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHH
Q 035828 595 VFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEG 674 (781)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 674 (781)
..+..+.|+.. +...-+.+...|.+..--.|.+.+...|++.+|...|++...--+--|......+.++....+++-.|
T Consensus 65 a~~q~ldP~R~-~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 65 ALQQKLDPERH-LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHHhcChhHH-HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 33444555543 34444444444555555556666666666666666666665433334555555566666666666666
Q ss_pred HHHHHHhHHHcCCCCC---cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 675 LQYYNNMLEEYDVRPE---TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 675 ~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
...++++.+. .|. +.....+.+.|...|++.+|..-|+.. ..-|+...-.....-+.+.|+.++|..-+..+.
T Consensus 144 ~~tLe~l~e~---~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 144 QQTLEDLMEY---NPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhhc---CCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 6666665433 232 344555566666666666666555544 333443333223333445555555544444433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0036 Score=55.64 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHH
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSA 732 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 732 (781)
..+..+...+...|++++|...+++.+....-.++ ..++..+..++...|++++|++.++++ ...|+ ...+..+...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 35555666666677888888887777644111111 246777777777888888888777765 33333 3344455444
Q ss_pred HH-------hcCCcH-------HHHHHHHHHhccCCCCC
Q 035828 733 CS-------HHGDTK-------MGKQVAELLFKLEPENV 757 (781)
Q Consensus 733 ~~-------~~g~~~-------~A~~~~~~~~~~~p~~~ 757 (781)
+. ..|+++ +|..+++++...+|++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 54 666665 55666666777777543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0012 Score=58.31 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=82.6
Q ss_pred hhHHHHhhhh--cCCCcchhhHHHHHHHh-----cCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccC---------
Q 035828 24 ESSLALFYET--CNKDVVTWNAMITACVE-----NRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMN--------- 87 (781)
Q Consensus 24 ~~a~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--------- 87 (781)
..-.+.|+.. ...|..+|..+|+.|.+ +|..+-....+..|.+-|+.-|..+|+.||..+=+..
T Consensus 31 ~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 31 APHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred cchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 3345667765 66788999999999885 4778888899999999999999999999999886522
Q ss_pred -------cccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCC
Q 035828 88 -------CLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGD 123 (781)
Q Consensus 88 -------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 123 (781)
..+-|.+++++|...|+-||..++..|++.|++.+.
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 245678999999999999999999999999987654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0013 Score=62.37 Aligned_cols=105 Identities=15% Similarity=0.177 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHH
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAM 729 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l 729 (781)
..|...+.-..+.|++++|...|+.+++.+.-.+- +..+..++..|...|++++|...|+.+ ...|+ ...+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 35665555456679999999999999977322221 357889999999999999999999887 22332 3345556
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCCCCchH
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
+..+...|++++|...++++.+..|++..+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 6677789999999999999999999977543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.004 Score=60.11 Aligned_cols=146 Identities=16% Similarity=0.228 Sum_probs=100.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hcccCcHHHHHHHHHHhHHHcCCCCCcchH---HH------
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSA--CSHSGLVDEGLQYYNNMLEEYDVRPETEHH---VC------ 696 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~---~~------ 696 (781)
.++...|++++|...-...++ +.++. .+..++++ +.-.++.+.|...|++.+ ...|+...- ..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilk--ld~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILK--LDATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHh--cccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 445677888888877666654 23321 23333333 334678888998888876 456662211 11
Q ss_pred ----HHHHhhhcCChHHHHHHHHhC-CCCCCcc-----hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 697 ----IVDMLGRSGKLQEAYEFIKNL-PIQPKPG-----VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 697 ----l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
=.....+.|++.+|.+.+.+. .+.|+.. .|.....+..+.|+..+|+.--+.+.+++|.-..++..-+..
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 123456788999999888876 5566433 344444455678999999999999999999988899999999
Q ss_pred HHhcCChhhHHhh
Q 035828 767 YVALGRWKDAVEI 779 (781)
Q Consensus 767 ~~~~g~~~~A~~l 779 (781)
+...++|++|.+=
T Consensus 331 ~l~le~~e~AV~d 343 (486)
T KOG0550|consen 331 HLALEKWEEAVED 343 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0044 Score=65.31 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHhcc--c---CcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhc--------CChHHHHHHHHh
Q 035828 651 IRPTKSSVISLLSACSH--S---GLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRS--------GKLQEAYEFIKN 716 (781)
Q Consensus 651 ~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 716 (781)
...|...|...+++... . ++.+.|..+|++.++. +|+ ...|..+..++... +++.++.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 55677888888887543 2 3477999999999855 888 35666655544332 123344444444
Q ss_pred C-C---CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 717 L-P---IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 717 ~-~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
. . ...++..+..+.-.....|++++|...++++.+++| +...|..+|.+|...|+.++|.+.+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 1 223445666666666678999999999999999999 5789999999999999999998765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.51 Score=51.12 Aligned_cols=224 Identities=9% Similarity=0.014 Sum_probs=120.9
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHH--HhcCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHH
Q 035828 187 LGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMY--SQCGDIEAAERAFWGMT---CKDVVSWNAIIDGFALNGKFEEA 261 (781)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 261 (781)
.+++..|......+.+..+ ...|..++.++ .+.|+.++|..+++... ..|..|...+-..|...++.++|
T Consensus 22 ~~qfkkal~~~~kllkk~P-----n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHP-----NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hHHHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 3444555555554444432 12333444443 45788888887777664 23677777888888888888888
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCC-HHHHHHHHHhhC
Q 035828 262 FDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNS-LSKAELLFNAIA 340 (781)
Q Consensus 262 ~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~ 340 (781)
..+|++... ..|+..-...+..++.+.+++.+-.++--++.+ ..+-+...+-++++.+..... .+.+..
T Consensus 97 ~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~------ 166 (932)
T KOG2053|consen 97 VHLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLD------ 166 (932)
T ss_pred HHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCccccc------
Confidence 888888876 557766677777777777766655544444433 233344555555555433211 000000
Q ss_pred CCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhc-CCCchhHHHHHHHHHHhcCCH
Q 035828 341 PMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLG-FSNNTIGVNALMHMYINCGDL 419 (781)
Q Consensus 341 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~~~~ 419 (781)
.+.- ..|......+.+.+ ..-+..-.-.....+...|++
T Consensus 167 ---------~i~l-------------------------------~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~ 206 (932)
T KOG2053|consen 167 ---------PILL-------------------------------ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKY 206 (932)
T ss_pred ---------chhH-------------------------------HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccH
Confidence 0111 12222333333222 111111111222334556778
Q ss_pred HHHHHHHHh-hcCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 035828 420 VAAFSLLQR-ISHN---SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQ 465 (781)
Q Consensus 420 ~~a~~~~~~-~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 465 (781)
++|++++.. .-.. .+...-+--+..+...+++.+..++-.++...+
T Consensus 207 ~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 207 QEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 888887732 2111 233334455666777788888888888887766
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0056 Score=58.09 Aligned_cols=101 Identities=14% Similarity=0.233 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK----SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVC 696 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 696 (781)
.|...+..+.+.|++++|+..|+.+.+. .|+. ..+..+..++...|++++|...|+.+.+.+...|. ...+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 5666666667789999999999999883 4543 46777888889999999999999999877544444 466667
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCCcc
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQPKPG 724 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 724 (781)
++..+...|++++|.+.+++. ..-|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 788888999999999998876 3445543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00069 Score=43.83 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=38.2
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 724 GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
..+..+...+...|++++|+++++++++.+|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999999998875
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.011 Score=55.71 Aligned_cols=152 Identities=13% Similarity=0.025 Sum_probs=103.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH-H---HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHh
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKS-S---VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDML 701 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~ 701 (781)
...+...|++++|++.|+++... .|+.. . .-.+..++.+.+++++|...+++.++.++-.|+. ..+-.++.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 34456789999999999999984 44332 2 2456678899999999999999999886666654 3333333322
Q ss_pred hhc---------------CCh---HHHHHHHHhC-CCCCCcch-----------HH-------HHHHHHHhcCCcHHHHH
Q 035828 702 GRS---------------GKL---QEAYEFIKNL-PIQPKPGV-----------WG-------AMLSACSHHGDTKMGKQ 744 (781)
Q Consensus 702 ~~~---------------g~~---~~A~~~~~~~-~~~p~~~~-----------~~-------~l~~~~~~~g~~~~A~~ 744 (781)
... .+. .+|++.|++. ..-|++.. -+ .+..-|.+.|++..|..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~ 196 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVN 196 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 111 122 3455555554 22232211 01 12333668899999999
Q ss_pred HHHHHhccCCCC---CchHHHHHHHHHhcCChhhHHhhc
Q 035828 745 VAELLFKLEPEN---VGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 745 ~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
-++.+++.-|+. +.++..++.+|.+.|..++|.+..
T Consensus 197 r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 197 RVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 999999988764 456778889999999999998754
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.06 Score=46.12 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC---Ccch
Q 035828 651 IRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP---KPGV 725 (781)
Q Consensus 651 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~ 725 (781)
.-|+.-.-..|..++...|+..+|...|++... |+-. |......+.++...-++...|...++++ ..+| ++..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567777777889999999999999999999875 4444 5678889999999999999999999887 2233 3345
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
.-.+.+.+...|.+++|+..++.+..-.|+ +..-...+..+.++|+.++|..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 666788899999999999999999988877 6677778888999999888764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.002 Score=47.61 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=25.9
Q ss_pred HHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 733 CSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+...++++.|.++++++++.+|+++..+..+|.+|.+.|++++|.+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 51 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALED 51 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHH
Confidence 44555555555555555555555555555555555555555555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.017 Score=46.98 Aligned_cols=91 Identities=25% Similarity=0.308 Sum_probs=69.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhh
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIRPTK--SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLG 702 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 702 (781)
+..++...|+.++|+.+|++..+.|..... ..+-.+...+...|++++|..++++....+.-.+.. .....+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445567889999999999999998877653 366778888999999999999999998763221112 23333456778
Q ss_pred hcCChHHHHHHHHh
Q 035828 703 RSGKLQEAYEFIKN 716 (781)
Q Consensus 703 ~~g~~~~A~~~~~~ 716 (781)
..|+.++|++++-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 99999999988754
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.62 Score=48.79 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=43.5
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC----CCCCCcchHHHHHHHHHh---cCCcHHHHHHHHHHhccCCCCCchHHHHH
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL----PIQPKPGVWGAMLSACSH---HGDTKMGKQVAELLFKLEPENVGYYISLS 764 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 764 (781)
.++..|.+--...|..+.|+..--.+ .+-|-..+|..+.-+.+. -|--.+|.--++....++...-+-|..|+
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La 1101 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLA 1101 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 34445556667778888887653322 234444555555444333 45666666666665555555555566666
Q ss_pred HHHHhc
Q 035828 765 NMYVAL 770 (781)
Q Consensus 765 ~~~~~~ 770 (781)
--.+..
T Consensus 1102 ~~iFsk 1107 (1189)
T KOG2041|consen 1102 FRIFSK 1107 (1189)
T ss_pred HHHhcc
Confidence 544433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00096 Score=48.70 Aligned_cols=63 Identities=21% Similarity=0.282 Sum_probs=36.8
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC-CcHHHHHHHHHHhccCC
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG-DTKMGKQVAELLFKLEP 754 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 754 (781)
..|..+...+...|++++|+..+++. ...| ++..+..+..++...| ++++|++.++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555556666666666666666554 2333 3445556666666666 56666666666666665
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.52 Score=46.85 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=32.2
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGA 728 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 728 (781)
..|++.++.-.-.-+. .+.|++.+|..++-++....+|++|.+.+.+++ |+..+++.
T Consensus 474 sqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred hcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 3456665554444333 346666666666666666666666666666652 44444433
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0068 Score=51.13 Aligned_cols=94 Identities=5% Similarity=-0.081 Sum_probs=65.5
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSAC 733 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 733 (781)
..-.+..-+...|++++|..+|+-+.. +.|. ...|..|.-++-..|++++|++.+..+ .+.| ++..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 344444555667888888888877753 4665 466677777777888888888887766 3344 455666777777
Q ss_pred HhcCCcHHHHHHHHHHhccC
Q 035828 734 SHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~ 753 (781)
...|+.+.|.+.++.++...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 77888888888888777665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.13 Score=52.93 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=31.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHhcccCcHHHHHHHHHHhHH
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRPTKS-----------SVISLLSACSHSGLVDEGLQYYNNMLE 683 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 683 (781)
......+++++|..+-++..+ +.||.. -|.-.-.+|.++|+..+|..+++++..
T Consensus 781 qlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 334455666666666665544 344432 123333577778888888888887643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.17 Score=47.83 Aligned_cols=172 Identities=11% Similarity=0.051 Sum_probs=105.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCC-CCccc-H---HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcC
Q 035828 409 LMHMYINCGDLVAAFSLLQRISHN-SDTSC-W---NIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGN 483 (781)
Q Consensus 409 li~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~---~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 483 (781)
....+...|++++|.+.|+.+... |+... - -.+..++.+.+++++|...+++..+..+-.|+. -+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhh
Confidence 334456789999999999998554 53322 1 345678899999999999999999876444443 23333333221
Q ss_pred --c---------------cch---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHH
Q 035828 484 --L---------------ELA---FEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCM 543 (781)
Q Consensus 484 --~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 543 (781)
. .+. ..|...+ ..+++-|-.+.-..+|...+..+...=...--.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~---------------~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~i 181 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDF---------------SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSV 181 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHH---------------HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011 1222333 3334444444444445444433321111111234
Q ss_pred HHHHHhCCChhHHHHHHhhc-C----CCCCHhHHHHHHHHhcccCchHHHHHHHHHHH
Q 035828 544 ISAFSQNKAEVRALELFRHL-E----FEPNEISIVSILSACTQLGVLRHGKQIHGHVF 596 (781)
Q Consensus 544 ~~~~~~~~~~~~A~~~~~~~-~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 596 (781)
..-|.+.|.+..|+.-++.+ . .......+..+..++...|..+.|......+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 56688899999999988888 2 33345567778889999999999988876554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.68 Score=45.91 Aligned_cols=136 Identities=12% Similarity=0.067 Sum_probs=105.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHH-HH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSG-IRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHV-CI 697 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l 697 (781)
..+|...++...+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+-=+.. -||...|. -.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3478888888888888999999999999988 6678889998886665 57888999999876544 45654443 45
Q ss_pred HHHhhhcCChHHHHHHHHhC--CCCCC--cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch
Q 035828 698 VDMLGRSGKLQEAYEFIKNL--PIQPK--PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
+..+.+-++-+.|..+|+.. ++..+ ..+|..++.--..-|+...+..+-+++.++.|.....
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~ 538 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLI 538 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHH
Confidence 56667888888999999855 22223 5678889888888999999999999999988875433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.091 Score=52.81 Aligned_cols=186 Identities=11% Similarity=0.140 Sum_probs=108.5
Q ss_pred HhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHH
Q 035828 548 SQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSM 626 (781)
Q Consensus 548 ~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 626 (781)
-+..++..-+++-++. ++.||-.+.-.++ +-.....+.++++++++..+.|-..
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~------------------------ 233 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEAS------------------------ 233 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHh------------------------
Confidence 3444555555555555 6677654433322 2233455778888888776644211
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCC
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGK 706 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 706 (781)
+.+....+..-..++.+......|-..+-..|..++.+.|+.++|.+.+++|.+.+...-...+...|+..|...++
T Consensus 234 ---lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~ 310 (539)
T PF04184_consen 234 ---LGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA 310 (539)
T ss_pred ---hchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC
Confidence 00000001111122223333344445555667778888999999999999998763221224677889999999999
Q ss_pred hHHHHHHHHhCCC--CCCcc--hHHHHHHHHHhcCCc---------------HHHHHHHHHHhccCCCCCchHH
Q 035828 707 LQEAYEFIKNLPI--QPKPG--VWGAMLSACSHHGDT---------------KMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 707 ~~~A~~~~~~~~~--~p~~~--~~~~l~~~~~~~g~~---------------~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
+.++..++.+... -|... .|...+-.....||. ..|.+...++.+.+|.-|....
T Consensus 311 Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 311 YADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 9999999988731 23322 344433333333432 3456788888898888766543
|
The molecular function of this protein is uncertain. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0036 Score=62.29 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=47.4
Q ss_pred CCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc----hHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 688 RPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG----VWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 688 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
.|+ ...+..+..+|.+.|++++|+..+++. .+.|+.. .|..+..+|.+.|+.++|+..+++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 344 467777777788888888888877764 5666643 36777777777788888888888887763
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.021 Score=55.23 Aligned_cols=122 Identities=14% Similarity=0.082 Sum_probs=69.7
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHh---HHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-------C-CCCCcc
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNM---LEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-------P-IQPKPG 724 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~ 724 (781)
.|..|...|.-.|+++.|+..-+.- .+++|-+.. ...+..|..++.-.|+++.|.+.++.. + -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555555566777666554432 223343333 356667777777777777776665532 1 111233
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccC------CCCCchHHHHHHHHHhcCChhhHHh
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLE------PENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
+..++.++|.-..++++|+.+..+=+.+. .....++..|+++|...|..++|+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 45556666666666777776666544331 2345566677777777777776654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.047 Score=50.11 Aligned_cols=153 Identities=17% Similarity=0.135 Sum_probs=99.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhh
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIR-P-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLG 702 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 702 (781)
....+...|++.+|++.|+.+...--. | -....-.++.++.+.|+++.|...+++.++.++-.|.. ..+-.++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344467889999999999999975211 1 12356677889999999999999999999886666653 33333433332
Q ss_pred h-----------cCChHHHHHHHHhC-CCCCCcchH------------------HHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 703 R-----------SGKLQEAYEFIKNL-PIQPKPGVW------------------GAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 703 ~-----------~g~~~~A~~~~~~~-~~~p~~~~~------------------~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
. .+...+|+..|+.+ ..-|++.-. -.++.-+.+.|.+..|...++.+++.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2 22344666666655 112221110 11244467899999999999999999
Q ss_pred CCCCCch---HHHHHHHHHhcCChhhHHh
Q 035828 753 EPENVGY---YISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 753 ~p~~~~~---~~~l~~~~~~~g~~~~A~~ 778 (781)
.|+.+.. ...++.+|.+.|..+.|.+
T Consensus 171 yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9986654 6678888999999887654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.4 Score=46.95 Aligned_cols=136 Identities=6% Similarity=-0.109 Sum_probs=74.0
Q ss_pred hcccCCchhhhhh-----hcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhhcCC-
Q 035828 362 LCSQFSFSTLLAI-----LPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCG---DLVAAFSLLQRISHN- 432 (781)
Q Consensus 362 ~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~- 432 (781)
-|+..+...|..+ +..+...+.+..|.++-.++...-..- ..+|.....-+.+.. +-+-+.++-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 4666666655543 344455566666666655553222122 566666666666653 233344444555321
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CChhhHHHHHHHhcCccchHHHHHHHHHHH
Q 035828 433 SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNAS---PDSVTLVNVISACGNLELAFEGKSLHGLAL 498 (781)
Q Consensus 433 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 498 (781)
....+|..+..--...|+.+-|..+++.=...+.-. .+..-+...+.-+...|+.+....++-.+.
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 355667788877778899998888876432222111 112234445555666666666665554443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0083 Score=58.20 Aligned_cols=123 Identities=10% Similarity=0.084 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh-cCChHHHHHHHHhC--CCCCCcchHHHHHHH
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR-SGKLQEAYEFIKNL--PIQPKPGVWGAMLSA 732 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 732 (781)
.+|-.+++...+.+..+.|..+|++..+. -..+..+|...+..-.+ .++.+.|.++|+.. ....+...|...++-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888999999999999999999632 22245667777776445 56777799999987 355677789999999
Q ss_pred HHhcCCcHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCChhhHHhhc
Q 035828 733 CSHHGDTKMGKQVAELLFKLEPENV---GYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.+.|+.+.|..+++++...-|.+. ..|......-.+.|+++...+|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999877655 57888888888889988887764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.2 Score=48.99 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=79.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------------HHHhcccCcHHHHHHHHHHhHHHcCCCCC-----cch
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSSVISL-------------LSACSHSGLVDEGLQYYNNMLEEYDVRPE-----TEH 693 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~ 693 (781)
..++.+.|+..|++-+. +.|+...-..+ ..-..+.|++..|.+.|.+.+ +++|+ ...
T Consensus 215 y~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~nakl 289 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKL 289 (486)
T ss_pred cccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh---cCCccccchhHHH
Confidence 45677777777777765 45554322211 123446788999999999886 66776 346
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHH--HHhcCCcHHHHHHHHHHhccCCC
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSA--CSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
|........+.|+.++|+.--+.. .+.| ..+.--+.++ +...++++.|++-++++.++..+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 777777888999999998877765 3333 2333334333 33478999999999999887644
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.42 E-value=1.1 Score=44.17 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=61.7
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHH
Q 035828 410 MHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFE 489 (781)
Q Consensus 410 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 489 (781)
|.-+...|+...|.++.++. .-|+..-|-..+.+++..++|++-..+... . -++..|..++.+|.+.|...+
T Consensus 184 i~~li~~~~~k~A~kl~k~F-kv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k---KsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEF-KVPDKRFWWLKIKALAENKDWDELEKFAKS----K---KSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C---CCCCChHHHHHHHHHCCCHHH
Confidence 33345556666666666665 446666677777777777777665544321 1 123666667777777777766
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHH
Q 035828 490 GKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTV 528 (781)
Q Consensus 490 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 528 (781)
|..+...+ + +..-+..|.++|++.+|.+.
T Consensus 256 A~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 256 ASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 66666551 1 13456778888888887665
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.067 Score=50.25 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=76.7
Q ss_pred CCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc---CCcHHHHHHHHHHhccCCCCCchHH
Q 035828 688 RPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHH---GDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 688 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
.|+ ...|..|...|...|+.+.|..-+.+. .+.| ++..+..+..++..+ ....++..+++++++++|.++.+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 665 689999999999999999999988877 4444 455666777666542 3678899999999999999999999
Q ss_pred HHHHHHHhcCChhhHHhhc
Q 035828 762 SLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 762 ~l~~~~~~~g~~~~A~~l~ 780 (781)
.|+..++.+|++.+|...|
T Consensus 232 lLA~~afe~g~~~~A~~~W 250 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAW 250 (287)
T ss_pred HHHHHHHHcccHHHHHHHH
Confidence 9999999999999998766
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.02 Score=52.97 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=81.5
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhC----CCCCC-cchHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL----PIQPK-PGVWGAML 730 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~ 730 (781)
.|+.-+. +.+.|++..|.+.|..-++.+.-.+ .+..+.+|..++...|++++|..+|..+ +..|. +..+--+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5776664 4566889999999999988743332 2578889999999999999999887665 44443 34666777
Q ss_pred HHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 731 SACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
......|+.++|...|+++.+..|+.+.+-..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 77788999999999999999999998776544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.033 Score=51.54 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRP--TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
|+.-+.. .+.|++..|..-|....+..-.- ....+--|..++...|++++|..+|..+.++++-.|. +..+.-|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5554444 35666888888888887742110 1235556777888888888888888888877666665 477778888
Q ss_pred HhhhcCChHHHHHHHHhC
Q 035828 700 MLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~ 717 (781)
...+.|+.++|-..+++.
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 888888888888777766
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.022 Score=45.40 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=54.8
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CC-CC-CcchHHHH---HHHHHhc
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-QP-KPGVWGAM---LSACSHH 736 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p-~~~~~~~l---~~~~~~~ 736 (781)
++...|+.+.|++.|.+.+ .+-|. ...|++-.+++--+|+.++|++=+++. .. -| .-....++ ...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 5566777777777777765 33554 466777777777777777777666654 11 11 11111111 2224556
Q ss_pred CCcHHHHHHHHHHhccCCCCCchH
Q 035828 737 GDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
|+.+.|..-++.+-+++..-....
T Consensus 129 g~dd~AR~DFe~AA~LGS~FAr~Q 152 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFAREQ 152 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHHHHH
Confidence 777777777777776665544333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=2 Score=45.31 Aligned_cols=47 Identities=17% Similarity=0.041 Sum_probs=23.9
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc
Q 035828 658 VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS 704 (781)
Q Consensus 658 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 704 (781)
|..|..--...|.++.|++.--.+.+-..+-|...+|+.|.-+-+..
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ 1070 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAV 1070 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh
Confidence 33333444456677777665544433223445556666665544433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.062 Score=49.34 Aligned_cols=118 Identities=16% Similarity=0.248 Sum_probs=80.1
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC----CCCCCcc-hHHHHHHHHH
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL----PIQPKPG-VWGAMLSACS 734 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~-~~~~l~~~~~ 734 (781)
....+...|++++|.+.|+.+...+...|- ......++.++.+.|++++|+..+++. +..|... .+-.++.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344566789999999999999988555554 467778999999999999999988875 3334322 2222222221
Q ss_pred -----------hcCCcHHHHHHHHHHhccCCCCCch-----------------HHHHHHHHHhcCChhhHHh
Q 035828 735 -----------HHGDTKMGKQVAELLFKLEPENVGY-----------------YISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 735 -----------~~g~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~ 778 (781)
..+...+|...++.+++..|+++.. -..++..|.+.|++..|+.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 1234568999999999999998876 2346777999999988864
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.20 E-value=2 Score=44.80 Aligned_cols=184 Identities=13% Similarity=0.088 Sum_probs=109.6
Q ss_pred CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 035828 568 NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMC 647 (781)
Q Consensus 568 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 647 (781)
+..+|..-+.--.+.|+.+...-+++...-.--.-+ ..|-..+.-....|+.+-|..++..-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-----------------efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-----------------EFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-----------------HHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 345566666666667777777666665432111101 135555666666688888887777666
Q ss_pred hCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCChHHHH---HHHHhC-CCCCC
Q 035828 648 NSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKLQEAY---EFIKNL-PIQPK 722 (781)
Q Consensus 648 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~ 722 (781)
+--++-...+...-..-+-..|+...|..+++.+..+ . |+. ..-.--+....+.|+.+.+. +++... ...-+
T Consensus 359 ~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~ 435 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKEN 435 (577)
T ss_pred hhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccC
Confidence 5433222222222222233468999999999998766 2 663 33334455566788888777 444433 12222
Q ss_pred cchH----HHHHHH-HHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 035828 723 PGVW----GAMLSA-CSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG 771 (781)
Q Consensus 723 ~~~~----~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 771 (781)
.... -.+.+- +...++.+.|..++.++.+..|++-..+..+......++
T Consensus 436 ~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 436 NGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 2222 222222 223688999999999999999998888888887766554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.49 Score=46.98 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=81.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc---------cCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh
Q 035828 633 HGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH---------SGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR 703 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 703 (781)
.|+.++|++++..+....-.++..+|..+.+.|-. ....++|...|.+.. .+.|+...=-+++..+.-
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLML 271 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHH
Confidence 79999999999997766677788888888765532 234778888888764 556764333334444444
Q ss_pred cCChH----HHHHHH---HhC----C---CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 704 SGKLQ----EAYEFI---KNL----P---IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 704 ~g~~~----~A~~~~---~~~----~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
.|... +..++- ..+ + ...+-..+.++..++.-.||+++|.+.++++.++.|+.=.
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 44322 222222 111 1 2233345577888888999999999999999999877433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.063 Score=44.21 Aligned_cols=80 Identities=15% Similarity=0.207 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCN---------------SGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~---------------~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
..++.++|.++++.|+.+....+++..-. ....|+..+..+++.+|+..|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34688899999999999999888876531 124577778888888888888888888888888888
Q ss_pred cCCCCCcchHHHHHH
Q 035828 685 YDVRPETEHHVCIVD 699 (781)
Q Consensus 685 ~~~~p~~~~~~~l~~ 699 (781)
++++.+..+|..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 876666667776664
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0056 Score=45.94 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
++..+...+...|++++|++.++++.
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444445555555555555444
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.042 Score=53.62 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=40.4
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
++.+|.-++.+.+++.+|++.-++. .. ++|+..+-.-..++...|+++.|...++++.++.|+|-.+...|..+-.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3445555555555565555554443 22 2344444455555555566666666666666666665555555554433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.26 Score=44.54 Aligned_cols=24 Identities=4% Similarity=0.142 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhh
Q 035828 508 VQNALITMYGRCRDIKSASTVFES 531 (781)
Q Consensus 508 ~~~~li~~~~~~g~~~~A~~~~~~ 531 (781)
.|.....+|....++++|...+.+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlk 56 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLK 56 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHH
Confidence 344444556666666666655544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.051 Score=45.07 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=37.8
Q ss_pred HHHHhhhcCChHHHHHHHHhC--C--CCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch---HHHHHHHHH
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL--P--IQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY---YISLSNMYV 768 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~--~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~ 768 (781)
-.....+.|+|++|++.|+.+ . ..| ....--.++.++.+.|+++.|...+++.++++|.++.+ ++..|..+.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 333444556666666665555 1 111 11233445555666666666666666666666554442 444444444
Q ss_pred hc
Q 035828 769 AL 770 (781)
Q Consensus 769 ~~ 770 (781)
++
T Consensus 96 ~~ 97 (142)
T PF13512_consen 96 EQ 97 (142)
T ss_pred HH
Confidence 43
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.047 Score=47.11 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...++..+...|+++.|...+++++..+|-+...+..++.+|.+.|+..+|++++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y 119 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVY 119 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4455555666777777777777777777777777777777777777777776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.17 Score=42.14 Aligned_cols=94 Identities=11% Similarity=0.133 Sum_probs=54.5
Q ss_pred cccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC---CcchHHHHHHHH--Hhc--
Q 035828 666 SHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP---KPGVWGAMLSAC--SHH-- 736 (781)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~--~~~-- 736 (781)
.+.|++++|.+.|+.+..++...|- ...-..|+.+|.+.|++++|+..+++. ++.| ++. |-....++ ...
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSYYEQDE 99 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHHHHHhh
Confidence 4456777777777776655444443 345556666777777777776666554 2233 222 22222221 122
Q ss_pred -------------CCcHHHHHHHHHHhccCCCCCchH
Q 035828 737 -------------GDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 737 -------------g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
+....|...++++++..|+++.+-
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 226788888999999999877543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.22 Score=46.70 Aligned_cols=112 Identities=17% Similarity=0.244 Sum_probs=72.4
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHH---HHHHHHhcCCc
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGA---MLSACSHHGDT 739 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 739 (781)
.....|+..+|...|...... .|. ...-..++.+|...|+.+.|..++..++..-....+.. -+..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 455678888888888887755 444 46667788888888888888888888754333333322 12222232222
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 740 KMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
..... +++-...+|+|...-+.|+..|...|+.++|.+.
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~ 258 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEH 258 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22222 2333355788888888888888888888888764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.92 E-value=3 Score=44.57 Aligned_cols=135 Identities=13% Similarity=-0.010 Sum_probs=85.7
Q ss_pred hcCCCCChhhHHHH-----HHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCC---hhhHHHHhccCCC-
Q 035828 66 EEGIRFDSTTLLII-----VSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGD---LNSSECTFSGMHC- 136 (781)
Q Consensus 66 ~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~- 136 (781)
.-|++.+..-|..+ |.-+...+.+..|.++...+-..-..- ..+|.....-+.+..+ -+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 45777766666554 666677788888888888774322222 4566666666665532 2334444444444
Q ss_pred -CCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCC----CCcchHHHHHHHhhccCChhHHHHHHHHHH
Q 035828 137 -ADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQ----ADNVSLSSAVAASACLGELSYGKVIHALGI 201 (781)
Q Consensus 137 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 201 (781)
....+|..+.+.....|+++-|..+++.=...+-. .+..-+...+.-+...||.+....++-.+.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 46678888888888999999999988764443321 233445666777777788777666555444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.017 Score=43.26 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=39.1
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCC----CC-cchHHHHHHHhhhcCChHHHHHHHHh
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVR----PE-TEHHVCIVDMLGRSGKLQEAYEFIKN 716 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (781)
+++.+...+...|++++|+..+++.++..... |+ ..++..+..++...|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56666666667777777777777665432111 22 45677788888888888888887765
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.33 Score=49.01 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=105.2
Q ss_pred HHHHHHHHh-----cCChHHHHHHHHHHHh-CCCCCCHH-HHHHHHHHhc---------ccCcHHHHHHHHHHhHHHcCC
Q 035828 624 SSMISAYGY-----HGKGWEAIELFHEMCN-SGIRPTKS-SVISLLSACS---------HSGLVDEGLQYYNNMLEEYDV 687 (781)
Q Consensus 624 ~~li~~~~~-----~~~~~~A~~~~~~m~~-~g~~p~~~-~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~ 687 (781)
..++.+... ....+.|+.+|.+... +.+.|+.. .|..+..++. ...+..+|.+..++.. .+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---el 333 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DI 333 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hc
Confidence 445555443 2245778889999882 23677643 3333322221 1334566777777665 44
Q ss_pred CCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHH
Q 035828 688 RPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKP-GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLS 764 (781)
Q Consensus 688 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 764 (781)
.|+ +.....+..++.-.++++.|..+|+++ ...|+. ..|....+.+..+|+.+.|.+..+++++++|....+-..--
T Consensus 334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 664 677778888888888899999999988 567764 46777777788899999999999999999999877766555
Q ss_pred HH-HHhcCChhhHHhhc
Q 035828 765 NM-YVALGRWKDAVEIG 780 (781)
Q Consensus 765 ~~-~~~~g~~~~A~~l~ 780 (781)
++ .+-...+++|+.++
T Consensus 414 ~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 414 CVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HHHHHcCCchhhhHHHH
Confidence 55 33344567777664
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.88 E-value=3.4 Score=44.83 Aligned_cols=119 Identities=15% Similarity=0.066 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCccc----HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 035828 214 TNSLISMYSQCGDIEAAERAFWGMTCKDVVS----WNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCA 289 (781)
Q Consensus 214 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~ 289 (781)
...-|..+.+..-++-|..+-+.-.-+ ..+ .......+.+.|++++|...|-+-... +.|.. ++.-+.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~-----Vi~kfL 408 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSE-----VIKKFL 408 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHH-----HHHHhc
Confidence 344566666666677777766544322 222 222334566789999999988776543 45542 445555
Q ss_pred cccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 035828 290 DSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 290 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (781)
.......-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+....
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~ 459 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK 459 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC
Confidence 666667777788888888876 566677899999999999999888877653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.12 Score=47.46 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=73.1
Q ss_pred CCCCHhHHHHHHHHhcc-----cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcC--CChhhHHHHHHHHHhcCChH
Q 035828 565 FEPNEISIVSILSACTQ-----LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC--KSNAAWSSMISAYGYHGKGW 637 (781)
Q Consensus 565 ~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~li~~~~~~~~~~ 637 (781)
-+-|..+|.+.+..+.. .+.++-....++.|.+.|+..|..+|+.|+..+-+. .....+....-.|-+ +-+
T Consensus 63 ~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~--QQ~ 140 (406)
T KOG3941|consen 63 EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQ--QQN 140 (406)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCch--hhh
Confidence 34455566655555432 345566666788899999999999999999888654 222233333333333 334
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCc
Q 035828 638 EAIELFHEMCNSGIRPTKSSVISLLSACSHSGL 670 (781)
Q Consensus 638 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 670 (781)
-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 589999999999999999999999999988764
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=4.2 Score=44.70 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=58.0
Q ss_pred cCChHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHH
Q 035828 633 HGKGWEAIELFHEMCNSG-IRPTK--SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 709 (781)
..+.+.|..++....... +.+.. ..+..+.......+..++|...++..... ..+......-++.-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 344566667776654332 22222 13333333333332245666666554321 2233444455555557777777
Q ss_pred HHHHHHhCC--CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 710 AYEFIKNLP--IQPKPGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 710 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
+...+..|. ......-.--+.+++...|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777762 11111222334455555777777777777763
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.43 Score=43.63 Aligned_cols=136 Identities=10% Similarity=0.046 Sum_probs=97.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-----chHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-----EHHVC 696 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~ 696 (781)
.-+.++..+.-.|.+.-...++.+..+...+-+......|.+.-...||.+.|..+|++..+. .-..+. ....+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 345567777778888888899999988655567777788888888899999999999987665 333332 22333
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-CCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 697 IVDMLGRSGKLQEAYEFIKNLP-IQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
....|.-++++.+|...+++.. ..| ++...|.-.-...-.|+...|++..+.+....|....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 4455677888999988888873 223 3334444443444578999999999999999887443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.8 Score=41.02 Aligned_cols=214 Identities=17% Similarity=0.194 Sum_probs=115.9
Q ss_pred CChHHHHHHhhhcCCCC-----hhhHHHHHHHHHhCCChhHHHHHHhhc-C--CCC-CHhHHHHHHHHhcccCchHHHHH
Q 035828 520 RDIKSASTVFESCYNCN-----LCTWNCMISAFSQNKAEVRALELFRHL-E--FEP-NEISIVSILSACTQLGVLRHGKQ 590 (781)
Q Consensus 520 g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~--~~p-~~~~~~~ll~~~~~~~~~~~a~~ 590 (781)
+....+...+....... ...+......+...+....+...+... . ..+ ....+..........++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444544444433211 345556666677777777777776666 2 233 23344444445555566666666
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHh
Q 035828 591 IHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMIS-AYGYHGKGWEAIELFHEMCNSGIRP----TKSSVISLLSAC 665 (781)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~-~~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~~~ 665 (781)
.+.........+.. ....... .+...|+++.|...+.+... ..| ....+......+
T Consensus 117 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 117 LLEKALALDPDPDL-----------------AEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHcCCCCcch-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHH
Confidence 66665554443311 1222222 56667777777777777644 232 222333333334
Q ss_pred cccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHH
Q 035828 666 SHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKM 741 (781)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 741 (781)
...++.+.+...+....+. .|+ ...+..+...+...+++++|...+... ...|+ ...+......+...|+.+.
T Consensus 178 ~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 178 EALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred HHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHH
Confidence 4566677777777766543 333 455666666666666677776666554 33333 3334444444445556677
Q ss_pred HHHHHHHHhccCCC
Q 035828 742 GKQVAELLFKLEPE 755 (781)
Q Consensus 742 A~~~~~~~~~~~p~ 755 (781)
+...+.+..+..|.
T Consensus 255 ~~~~~~~~~~~~~~ 268 (291)
T COG0457 255 ALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhCcc
Confidence 77777777666665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.094 Score=52.70 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=83.0
Q ss_pred cHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhh---------cCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 035828 670 LVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGR---------SGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG 737 (781)
Q Consensus 670 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 737 (781)
..+.|+.+|.+....-..+|+ ...|..+..++.. .....+|.++.+++ ...| |+.....+..+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 567888899988744356787 4666666655432 22344556666555 4555 5556666666677788
Q ss_pred CcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 738 DTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+.+.|..+++++..++|+.+.++...+++....|+.++|++-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999999999999999999999999999999999864
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.37 Score=38.88 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=78.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 710 (781)
.-.|..++..++..+...+ .+..-+|-+|--...+-+-+-..+.++.+-+-+.+.| -.-.-.++.+|...|...+
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNKLSE- 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---H-
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcchHH-
Confidence 3458888889998888752 2344455555555555566667777776633322221 1234456666666665443
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 711 YEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 711 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..+.-+..+.++|+.++-.+++..+.+.+..+|.....++.+|.+-|+..+|.+++
T Consensus 88 --------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 88 --------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp --------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred --------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 34445666778889999999999888877778888999999999999999888876
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.4 Score=37.68 Aligned_cols=129 Identities=10% Similarity=0.086 Sum_probs=89.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHH-----HHHhhh
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCI-----VDMLGR 703 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~ 703 (781)
++..++.++|+.-|..+.+.|...=++ ............|+...|...|+++-.. .|.+.....+ ...+..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 467789999999999999887653222 2222233456789999999999999654 3433333222 234678
Q ss_pred cCChHHHHHHHHhCCC---CCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 704 SGKLQEAYEFIKNLPI---QPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 704 ~g~~~~A~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
.|-|++....++.+.. +-....-..|.-+..+.|++.+|.+++..+.. +...|.....
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirq 205 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQ 205 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHH
Confidence 9999999888887732 22344557777788899999999999999876 4333333333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.22 E-value=7.3 Score=44.30 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=83.9
Q ss_pred CChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHh----cccCchHHHHHHHHHH
Q 035828 520 RDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSAC----TQLGVLRHGKQIHGHV 595 (781)
Q Consensus 520 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~ 595 (781)
|++++|+.-+.++. ...|.-.++.--++|.+.+|+.++ .|+...+..+..+| .....++.|.-.|+..
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly-----~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY-----KPDSEKQKVIYEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee-----ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 45555555544443 224444555555666666666664 56666555544433 3344455554444332
Q ss_pred HHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHhcccCcHHH
Q 035828 596 FHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSS--VISLLSACSHSGLVDE 673 (781)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~~~~~~ 673 (781)
-+ ....+.+|...|++.+|+.+..+|.. .-|... -..|+.-+...+++-+
T Consensus 966 Gk-------------------------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen 966 GK-------------------------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred cc-------------------------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchh
Confidence 11 22234555666777777777666642 222222 2456666677777777
Q ss_pred HHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 674 GLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 674 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
|-+++.+-... ....+..|++...|++|+.+....
T Consensus 1018 Aa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1018 AAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 77777665432 334555667777788877765544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.78 Score=42.04 Aligned_cols=137 Identities=9% Similarity=0.000 Sum_probs=91.3
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHH--
Q 035828 437 CWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALIT-- 514 (781)
Q Consensus 437 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-- 514 (781)
..+.++..+.-.+.+.-.+..+++.++.. .+-+......+.+.-.+.||.+.|...+++..+..-+.+....+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566666777778888888888888764 455566667777777888888888888887776554445444444432
Q ss_pred ---HHHhcCChHHHHHHhhhcCCC---ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHH
Q 035828 515 ---MYGRCRDIKSASTVFESCYNC---NLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVS 574 (781)
Q Consensus 515 ---~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ 574 (781)
.|.-.+++.+|...++++... +++.-|.-.-++.-.|+..+|++.++.| +..|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhh
Confidence 344566777777778777633 4445554444455567788888888888 56666554443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.58 Score=49.26 Aligned_cols=169 Identities=15% Similarity=0.116 Sum_probs=106.5
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHh-CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh----cCChHHHHHHHHHH
Q 035828 572 IVSILSACTQLGVLRHGKQIHGHVFHL-GFQENSFISSALLDMYSNCKSNAAWSSMISAYGY----HGKGWEAIELFHEM 646 (781)
Q Consensus 572 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m 646 (781)
+..+++...=.||-+.+.+.+....+. ++.... ..|+-. .|...+..++. ....+.|.++++.+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~l---a~L~LL--------~y~~~~~~~~~~~~~~~~~~~a~~lL~~~ 259 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPL---AALVLL--------WYHLVVPSFLGIDGEDVPLEEAEELLEEM 259 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHH---HHHHHH--------HHHHHHHHHcCCcccCCCHHHHHHHHHHH
Confidence 344555555566777777766655442 111111 111111 34444444433 56788899999999
Q ss_pred HhCCCCCCHHHHHHHH-HHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhCC--CCC
Q 035828 647 CNSGIRPTKSSVISLL-SACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNLP--IQP 721 (781)
Q Consensus 647 ~~~g~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p 721 (781)
.+ --|+...|...- +.+...|++++|.+.+++....-..-|. ...+-.+...+.-..+|++|.+.+..+. ..-
T Consensus 260 ~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 260 LK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 98 578877766554 4456689999999999976532111222 3456678888999999999999998883 233
Q ss_pred CcchHHHHHHHHH-hcCCc-------HHHHHHHHHHhccC
Q 035828 722 KPGVWGAMLSACS-HHGDT-------KMGKQVAELLFKLE 753 (781)
Q Consensus 722 ~~~~~~~l~~~~~-~~g~~-------~~A~~~~~~~~~~~ 753 (781)
+..+|.-+..+|. ..|+. ++|.++++++..+.
T Consensus 338 Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 338 SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 3444544444443 47887 88888888877543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.4 Score=37.46 Aligned_cols=128 Identities=9% Similarity=0.061 Sum_probs=91.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML 701 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 701 (781)
....+|..+...+.......+++.+...| ..+...++.++..+++. +.++..+.++. .++.......++.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~-~~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY-DPQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH-CHHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34567777888889999999999999876 36777889999888876 34555555542 22344455688888
Q ss_pred hhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhc-CCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 702 GRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHH-GDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
.+.+.++++.-++.+++. +...+..+... ++.+.|++.+.+ +.++..|..++..+..
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 888999999999988753 33333334444 889999998886 3466677777766553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.24 Score=40.81 Aligned_cols=77 Identities=9% Similarity=0.059 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhh-c-----------------CCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 035828 403 TIGVNALMHMYINCGDLVAAFSLLQRI-S-----------------HNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQ 464 (781)
Q Consensus 403 ~~~~~~li~~~~~~~~~~~a~~~~~~~-~-----------------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 464 (781)
..++..+|.++++.|+++....+++.. . ..|+..+..+++.+|+.++++..|+++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 456667777777777777777776544 0 0134444555555555555555555555555444
Q ss_pred CCCCCChhhHHHHHH
Q 035828 465 QNASPDSVTLVNVIS 479 (781)
Q Consensus 465 ~~~~p~~~~~~~ll~ 479 (781)
-+++.+..++..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 334444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.3 Score=46.83 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=95.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCC--CCC--cch
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCN-SGIRPT---KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDV--RPE--TEH 693 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~-~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~--~~~ 693 (781)
+|-.+.+++.+.-++.+++.+-..-.. .|..|- .....++..++.-.+.++++++.|+...+-..- +|. ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344555555555566666655444333 233331 123344556666667888888888877654222 222 467
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-------CCCC-----CcchHHHHHHHHHhcCCcHHHHHHHHHHhccC--CCCCch
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-------PIQP-----KPGVWGAMLSACSHHGDTKMGKQVAELLFKLE--PENVGY 759 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 759 (781)
+..|...|.+..++++|.-+..++ ++.. ...+.-++.-++...|+...|.+.-+++.++. ..|..+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 888888888888888887665443 2221 12234455666778888888888888888764 333333
Q ss_pred ----HHHHHHHHHhcCChhhHH
Q 035828 760 ----YISLSNMYVALGRWKDAV 777 (781)
Q Consensus 760 ----~~~l~~~~~~~g~~~~A~ 777 (781)
..-++++|...|+.+.|-
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af 266 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAF 266 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHH
Confidence 445788888888877664
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.13 Score=44.31 Aligned_cols=70 Identities=23% Similarity=0.299 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHH----HcCCCCCcch
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLE----EYDVRPETEH 693 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 693 (781)
+...++..+...|++++|+.+++.+.. ..| |...|..++.++...|+..+|.+.|+++.+ ++|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 455566777788999999999998887 445 667888899999999999999888887643 3577787543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=3.4 Score=38.35 Aligned_cols=150 Identities=19% Similarity=0.219 Sum_probs=101.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh----
Q 035828 630 YGYHGKGWEAIELFHEMCNSGI-RP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR---- 703 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 703 (781)
-...|++++|.+.|+.+..... .| ..-+...++.++.+.++++.|+...++..+.++-.|+.. |...+.++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhccC
Confidence 4578999999999999997521 11 344677778899999999999999999998877777752 2222222221
Q ss_pred ---cCChHHHHHHHHhC-------C---CCCCcch-----------H-HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 704 ---SGKLQEAYEFIKNL-------P---IQPKPGV-----------W-GAMLSACSHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 704 ---~g~~~~A~~~~~~~-------~---~~p~~~~-----------~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
..+...+.+.+..+ + ..||+.. . -.+.+-|.+.|.+..|..-++++++.-|+.+.
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~ 202 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA 202 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc
Confidence 22333333333333 2 2233221 1 12344467899999999999999999777555
Q ss_pred h---HHHHHHHHHhcCChhhHHhhc
Q 035828 759 Y---YISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 759 ~---~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+ +..+..+|.+.|-.++|.+..
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHH
Confidence 4 556667899999999998753
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.4 Score=39.21 Aligned_cols=150 Identities=16% Similarity=0.136 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 700 (781)
+||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++.--|++..|.+-+...-+. +|+.. |.+|---
T Consensus 101 vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DP-fR~LWLY 174 (297)
T COG4785 101 VFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDP-FRSLWLY 174 (297)
T ss_pred HHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCCh-HHHHHHH
Confidence 678888888899999999999999987 45532 22222223445578999998877666443 55432 2222222
Q ss_pred h-hhcCChHHHHHHHH-hCCCCCCcchHHHHHHHH-HhcCCcHHHHHHHHHHhccCCCC-------CchHHHHHHHHHhc
Q 035828 701 L-GRSGKLQEAYEFIK-NLPIQPKPGVWGAMLSAC-SHHGDTKMGKQVAELLFKLEPEN-------VGYYISLSNMYVAL 770 (781)
Q Consensus 701 ~-~~~g~~~~A~~~~~-~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 770 (781)
+ .+.-+..+|..-+. +.. .-+...|...+-.+ ..+=..+ .+++++..-..++ ..+|+.|+..|...
T Consensus 175 l~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2 34447778876544 432 22323343332222 2111112 2222222222222 34788999999999
Q ss_pred CChhhHHhhcC
Q 035828 771 GRWKDAVEIGK 781 (781)
Q Consensus 771 g~~~~A~~l~~ 781 (781)
|+.++|..++|
T Consensus 251 G~~~~A~~LfK 261 (297)
T COG4785 251 GDLDEATALFK 261 (297)
T ss_pred ccHHHHHHHHH
Confidence 99999998875
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.6 Score=37.26 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=23.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHhcccCcHHHHHHHHHHhH
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSSVISLL-SACSHSGLVDEGLQYYNNML 682 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~ 682 (781)
..++.+++..+++.+.- ++|.......+- .-+...|+|.+|..+|+++.
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34555555555555554 444443322221 12334455555555555543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.15 Score=46.90 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=78.9
Q ss_pred HHHhhhhc--CCCcchhhHHHHHHHh-----cCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccC------------
Q 035828 27 LALFYETC--NKDVVTWNAMITACVE-----NRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMN------------ 87 (781)
Q Consensus 27 ~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------ 87 (781)
+..|...+ ..|-.+|-+++..|.. .+.++-.-..++.|.+-|+.-|..+|+.||..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 3466678888887765 3567777788999999999999999999998875432
Q ss_pred ----cccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCCh-hhHHHHhccC
Q 035828 88 ----CLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDL-NSSECTFSGM 134 (781)
Q Consensus 88 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~ 134 (781)
.-+-+..++++|...|+-||..+-..|+++|++.+-. .+..++.-.|
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2345678899999999999999999999999877653 2333443333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.34 Score=47.58 Aligned_cols=123 Identities=14% Similarity=0.067 Sum_probs=94.0
Q ss_pred HHHhcCChHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cch
Q 035828 629 AYGYHGKGWEAIELFHEMCNS-----GIRP---------TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEH 693 (781)
Q Consensus 629 ~~~~~~~~~~A~~~~~~m~~~-----g~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~ 693 (781)
.|.+.|++..|..-|++.... +..+ -..++..+..++.+.+++.+|++...+.++ ..|+ ...
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe---~~~~N~KA 293 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE---LDPNNVKA 293 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh---cCCCchhH
Confidence 467889999998888875431 1111 123677788888999999999999999875 3554 677
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHh--cCCcHHHHHHHHHHhccCC
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSH--HGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~p 754 (781)
+..=..++...|+++.|+..|+++ ...|+......-+..|.+ ....+...+.|..|+...+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 888889999999999999999988 688887777666666654 3455666889999998765
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.1 Score=47.09 Aligned_cols=156 Identities=18% Similarity=0.141 Sum_probs=110.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHhcc----cCcHHHHHHHHHHhHHHcCCCCCc
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSG-IRPTK-----SSVISLLSACSH----SGLVDEGLQYYNNMLEEYDVRPET 691 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~ 691 (781)
.+..+++..+=.|+.+.+++++.+..+.+ +.-.. ..|...+..+.. ..+.+.|.++++.+.++ -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 46677778888899999999998876532 32221 134444444432 45789999999999866 6775
Q ss_pred chHH-HHHHHhhhcCChHHHHHHHHhCCC-CC-----CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchH-HHH
Q 035828 692 EHHV-CIVDMLGRSGKLQEAYEFIKNLPI-QP-----KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY-ISL 763 (781)
Q Consensus 692 ~~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~l 763 (781)
..|. .-.+.+...|+.++|++.++++-. +. ....+-.+.+.+.-.+++++|...+.++.+.+.-+...| +..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4443 455677889999999999997621 11 233455667777889999999999999999876544444 456
Q ss_pred HHHHHhcCCh-------hhHHhhc
Q 035828 764 SNMYVALGRW-------KDAVEIG 780 (781)
Q Consensus 764 ~~~~~~~g~~-------~~A~~l~ 780 (781)
+-.|...|+. ++|.+++
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~ 370 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELF 370 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHH
Confidence 6678888988 7776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.067 Score=31.97 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 46677888888999999999999999998875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=5.8 Score=38.46 Aligned_cols=240 Identities=9% Similarity=-0.111 Sum_probs=135.9
Q ss_pred HHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCccc----chhHHHHHHHHhc
Q 035828 28 ALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLK----QGRVVHCLSIKAG 103 (781)
Q Consensus 28 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~ 103 (781)
.+++.+..+|.......+.++...|..+ +...+..+.. .+|...-...+.++++.|+.. ++...+..+...
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 3444456777777777777887776543 3333444433 346666666777777777643 345555544332
Q ss_pred CCCCcchhhhHHHHhhccCCh-----hhHHHHhc-cCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchH
Q 035828 104 MIADSSLCNVFVNMYAKCGDL-----NSSECTFS-GMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSL 177 (781)
Q Consensus 104 ~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 177 (781)
.++..+-...+.+++..+.- .++...+. .+..++...--..+.++.+.++ ..++..+-.+.+ .++...-
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR 176 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVR 176 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHH
Confidence 46666666666666655421 22333332 2334455555566677777776 455666555554 2455555
Q ss_pred HHHHHHhhccCC-hhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCC
Q 035828 178 SSAVAASACLGE-LSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNG 256 (781)
Q Consensus 178 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 256 (781)
...+.+++..+. ...+...+..+. . +++..+....+.++.+.|+....-.+.+.+..++ ..-..+.++...|
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L---~--D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAML---Q--DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh---c--CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 556666665431 223333333333 1 2347777778888888887554444444444444 3446677777777
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 035828 257 KFEEAFDLLHEMQLMRSVEPDIATVVTLISLC 288 (781)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~ 288 (781)
.. +|+..+..+... .||...-...+.+|
T Consensus 250 ~~-~a~p~L~~l~~~---~~d~~v~~~a~~a~ 277 (280)
T PRK09687 250 DK-TLLPVLDTLLYK---FDDNEIITKAIDKL 277 (280)
T ss_pred CH-hHHHHHHHHHhh---CCChhHHHHHHHHH
Confidence 74 677777777763 34665555555444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.96 E-value=18 Score=44.73 Aligned_cols=128 Identities=11% Similarity=0.073 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCc
Q 035828 406 VNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPD-SVTLVNVISACGNL 484 (781)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~ 484 (781)
|-.+...|..-+++|....+.......|+ ...-|......|++..|...|+.+.+.+ |+ ..+++.++......
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~---p~~~~~~~g~l~sml~~ 1496 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD---PDKEKHHSGVLKSMLAI 1496 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC---CccccchhhHHHhhhcc
Confidence 33444577777777777666653212222 2233445667788888999999888754 44 56677666666666
Q ss_pred cchHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHH
Q 035828 485 ELAFEGKSLHGLALKSLMGLDTRVQ-NALITMYGRCRDIKSASTVFESCYNCNLCTWNCM 543 (781)
Q Consensus 485 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 543 (781)
+.+.......+-..... .+...-+ +.=+.+--+.++++...+... ..+...|...
T Consensus 1497 ~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1497 QHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred cchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 66655554333332221 1112222 222333356677776666554 4444455544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.93 E-value=3.5 Score=37.68 Aligned_cols=89 Identities=10% Similarity=-0.043 Sum_probs=50.9
Q ss_pred CCCChh----hHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCC--hhhH
Q 035828 467 ASPDSV----TLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCN--LCTW 540 (781)
Q Consensus 467 ~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 540 (781)
..||.. .|.....+|....+++++...+....+. .+.+...|.+ ....+.|.-+.+++..-+ +..|
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 567754 4555566788888888888876665532 1222222221 123344555555554322 2355
Q ss_pred HHHHHHHHhCCChhHHHHHHhhc
Q 035828 541 NCMISAFSQNKAEVRALELFRHL 563 (781)
Q Consensus 541 ~~l~~~~~~~~~~~~A~~~~~~~ 563 (781)
+-....|..+|.++.|-..+++.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHH
Confidence 66677777888777776666655
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.87 Score=38.99 Aligned_cols=92 Identities=10% Similarity=0.001 Sum_probs=68.4
Q ss_pred HHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCC
Q 035828 662 LSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLP--IQPKPGVWGAMLSACSHHGD 738 (781)
Q Consensus 662 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 738 (781)
...+...|++++|..+|+-+.- ..|. ...+..|..++-..|++++|++.+.-+. ...|+...-.....+...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 3445678999999999998763 3554 5667788888889999999999987651 12334445556667788999
Q ss_pred cHHHHHHHHHHhccCCCCC
Q 035828 739 TKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 739 ~~~A~~~~~~~~~~~p~~~ 757 (781)
.+.|...++.+.+ .|.+.
T Consensus 121 ~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 121 AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHHHHHHh-CcchH
Confidence 9999999999988 45543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.32 Score=47.45 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=69.6
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHh-------CCCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhcc----C--CCC
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKN-------LPIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKL----E--PEN 756 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--p~~ 756 (781)
...|.+|...|.--|+++.|+..-+. .+-.. ....+..+.+++.-.|+++.|.+.|+....+ . ...
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 57899999999999999999876432 22221 2335677788888899999999999887654 3 346
Q ss_pred CchHHHHHHHHHhcCChhhHHhhc
Q 035828 757 VGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 757 ~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
....+.|++.|.-...+.+|++.+
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh 298 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYH 298 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Confidence 778899999999999999998753
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.075 Score=31.81 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=26.7
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 724 GVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
..|..++..+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 357778888888999999999999999998863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.58 E-value=8.8 Score=38.45 Aligned_cols=77 Identities=17% Similarity=0.115 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcc------cHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCChhhH
Q 035828 404 IGVNALMHMYINCGDLVAAFSLLQRISHNSDTS------CWNIVIVACTQ---NGHFQEAIKTFKSMTQQQNASPDSVTL 474 (781)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~~p~~~~~ 474 (781)
.+.-.++-+|....+++...++++.+..-|+.. .-....-++.+ .|+.++|+.++..+.... ..++..||
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHH
Confidence 333455557888999999999999986555221 12234455666 789999999999965555 66777777
Q ss_pred HHHHHHh
Q 035828 475 VNVISAC 481 (781)
Q Consensus 475 ~~ll~~~ 481 (781)
..+-+.|
T Consensus 221 gL~GRIy 227 (374)
T PF13281_consen 221 GLLGRIY 227 (374)
T ss_pred HHHHHHH
Confidence 6665543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.29 Score=49.30 Aligned_cols=64 Identities=8% Similarity=0.057 Sum_probs=56.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS----SVISLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
+...|+.+..+|...|++++|+..|++..+ +.|+.. +|..+..+|...|+.++|++.+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455899999999999999999999999888 678753 5899999999999999999999998864
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.49 E-value=3.1 Score=43.23 Aligned_cols=103 Identities=12% Similarity=0.038 Sum_probs=66.7
Q ss_pred HHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHH
Q 035828 514 TMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHG 593 (781)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 593 (781)
....++|+++.|.++.++.. +...|..|.......|+.+-|.+.|.+.+ -+..|+-.+.-.|+.+.-.++.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHH
Confidence 44567888888888877665 45588888888888999888888888762 24455555566677666666666
Q ss_pred HHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 035828 594 HVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEM 646 (781)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 646 (781)
.....|- +|....++.-.|+.++..+++.+-
T Consensus 398 ~a~~~~~----------------------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 398 IAEERGD----------------------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHTT-----------------------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHccC----------------------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5555542 445555555667776666665443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.34 E-value=7.7 Score=42.29 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCChHHHHHHhhhcCCCChh---hHHHHHHHHHhCCChhHHHHHHhhc-C-CCCCHhHHHHHHHHhcccCc
Q 035828 510 NALITMYGRCRDIKSASTVFESCYNCNLC---TWNCMISAFSQNKAEVRALELFRHL-E-FEPNEISIVSILSACTQLGV 584 (781)
Q Consensus 510 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~ 584 (781)
..-++.+++...++.|..+-+.-..+... ........+.+.|++++|...|-+. | +.|..+ +.-+.....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V-----i~kfLdaq~ 412 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV-----IKKFLDAQR 412 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH-----HHHhcCHHH
Confidence 34455566666666666666543322111 1222233456788888888877666 6 777544 334445555
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHH
Q 035828 585 LRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSM 626 (781)
Q Consensus 585 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 626 (781)
...-..+++.+.+.|+...-+ -..|+.+|.+..|+.-.+..
T Consensus 413 IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHH
Confidence 555666677777878764433 33444444444333333333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.30 E-value=2.9 Score=43.37 Aligned_cols=160 Identities=13% Similarity=-0.005 Sum_probs=104.1
Q ss_pred HHhhCCChhhHHHHHH-HHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCC
Q 035828 148 GCLHNNYPEKCLLYFR-EMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGD 226 (781)
Q Consensus 148 ~~~~~g~~~~a~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 226 (781)
...-.++++.+.++.+ .-.-..++ ..-...++.-+.+.|..+.|.++... | ..-.....+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~-----~~rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P-----DHRFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H-----HHHHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h-----HHHhHHHHhcCC
Confidence 3455778888776665 11111122 33466777777788888888776432 1 233445668999
Q ss_pred hhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHH
Q 035828 227 IEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIR 306 (781)
Q Consensus 227 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 306 (781)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+... |..++-.+.-.|+.+...++.+....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999988876 556899999999999999999999998765 45666667778888888888777666
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 035828 307 RLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 307 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (781)
.|- +|....++.-.|+.++..+++.+..+
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 553 45555666667899998888877644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.5 Score=41.36 Aligned_cols=142 Identities=12% Similarity=0.087 Sum_probs=104.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCCh
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKL 707 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 707 (781)
....|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+-.+ ..+ ......-+..+.+....
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~---~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ---AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc---chhhHHHHHHHHHHHHHHHhcC
Confidence 457799999999999988742 223456777888999999999999999876322 111 12223445667777777
Q ss_pred HHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccC--CCCCchHHHHHHHHHhcCChhh
Q 035828 708 QEAYEFIKNLPIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLE--PENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 708 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
.+..++-.+....| |...--.+...+...|+.+.|.+.+-.+++.+ -++...-..|..++..-|.-+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 77777777775566 55566777777888999999999999988875 6678888888888887775544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.14 Score=40.98 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=68.9
Q ss_pred HHHHhhhcCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC----chHHHHHHHHHhc
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV----GYYISLSNMYVAL 770 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~ 770 (781)
-.-++...|+++.|++.|.+. -.+.++..|+.=.+++.-.|+.++|..-+++++++.-+.. .++...+.+|...
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 345678999999999999876 3455777899999999999999999999999999973323 2477889999999
Q ss_pred CChhhHHh
Q 035828 771 GRWKDAVE 778 (781)
Q Consensus 771 g~~~~A~~ 778 (781)
|+-++|+.
T Consensus 129 g~dd~AR~ 136 (175)
T KOG4555|consen 129 GNDDAARA 136 (175)
T ss_pred CchHHHHH
Confidence 99999975
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.16 E-value=3.2 Score=36.57 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH--HHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVIS--LLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVC 696 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 696 (781)
|..++.... .+.. +.....+.+...+-......+.. +...+...+++++|...++..+.. .-| ...--.
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lR 131 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHH
Confidence 444444432 2333 56666677765422222223333 345677889999999999887532 222 122335
Q ss_pred HHHHhhhcCChHHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 697 IVDMLGRSGKLQEAYEFIKNLPIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
|.+.....|.+|+|+..++...-+. .+.....-.+.+...|+.++|...|+++...+++++
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 6778899999999999998763111 222334446678899999999999999999885544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.04 E-value=2.8 Score=35.72 Aligned_cols=124 Identities=16% Similarity=0.237 Sum_probs=74.3
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035828 574 SILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 574 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
.++..+...+.......+++.+...+. .+.. .++.++..|++.+ ..+.++.+.. .+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~----------------~~~~li~ly~~~~-~~~ll~~l~~------~~ 67 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPA----------------LQTKLIELYAKYD-PQKEIERLDN------KS 67 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchh----------------HHHHHHHHHHHHC-HHHHHHHHHh------cc
Confidence 455555556667777777777776653 3333 3555555555543 3344444442 23
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc-CChHHHHHHHHhCCCCCCcchHHHHHHH
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS-GKLQEAYEFIKNLPIQPKPGVWGAMLSA 732 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 732 (781)
+.......++.|.+.+-++++..++.++- . +...+..+... ++.+.|++.+.+. .++..|..++..
T Consensus 68 ~~yd~~~~~~~c~~~~l~~~~~~l~~k~~----~------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~ 134 (140)
T smart00299 68 NHYDIEKVGKLCEKAKLYEEAVELYKKDG----N------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKA 134 (140)
T ss_pred ccCCHHHHHHHHHHcCcHHHHHHHHHhhc----C------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHH
Confidence 44556667778888888888888887652 1 33344444444 7888888887763 244467666655
Q ss_pred HH
Q 035828 733 CS 734 (781)
Q Consensus 733 ~~ 734 (781)
+.
T Consensus 135 ~l 136 (140)
T smart00299 135 LL 136 (140)
T ss_pred HH
Confidence 54
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.03 E-value=3.5 Score=39.51 Aligned_cols=146 Identities=14% Similarity=-0.004 Sum_probs=100.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHH----HHHHHhhhcCCh
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHV----CIVDMLGRSGKL 707 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~ 707 (781)
..|++.+|...++++.+. .+.|...++.-=.+|...|+.+.-...+++++.. -.|+...|. .+.-++.+.|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 457788888888888775 5667777877778888888888888888887643 255544443 344556788899
Q ss_pred HHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCChhhHHhhc
Q 035828 708 QEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE----NVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 708 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++|.+.-++. .+.| |...--+....+...|+..++++...+-...=.. -..-|-+.+..|...+.++.|++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999888876 4444 4444455666667788888888887765433211 1122445666677778888888876
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.59 E-value=1.8 Score=38.46 Aligned_cols=74 Identities=23% Similarity=0.230 Sum_probs=56.8
Q ss_pred hhcCChHHHHHHHHhCCCCC--CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCChhh
Q 035828 702 GRSGKLQEAYEFIKNLPIQP--KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE----NVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 775 (781)
.+.|+ ++|.+.|-++...| +.......+..+....|.++++.++-+++++.++ ||.++..|+.+|.++|++++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34455 67887777774444 3344555566677789999999999999998633 68899999999999999998
Q ss_pred H
Q 035828 776 A 776 (781)
Q Consensus 776 A 776 (781)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 7
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.58 E-value=23 Score=40.58 Aligned_cols=112 Identities=12% Similarity=0.164 Sum_probs=61.9
Q ss_pred CCCCHHHHHHH----HHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcc--
Q 035828 651 IRPTKSSVISL----LSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPG-- 724 (781)
Q Consensus 651 ~~p~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~-- 724 (781)
.+|+...+... ..-|...+.+++|.-.|+..-+ ...-+.+|..+|+|.+|+.+..++....+-.
T Consensus 931 y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~ 1000 (1265)
T KOG1920|consen 931 YKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVI 1000 (1265)
T ss_pred eccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHH
Confidence 45555544333 3344445666666666655411 2234556667777777777777664332222
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
....|+..+...+++-+|-+++++... +|. .-...|++...|++|+.+
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~s-d~~------~av~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLS-DPE------EAVALLCKAKEWEEALRV 1048 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhc-CHH------HHHHHHhhHhHHHHHHHH
Confidence 236666677777777777776666432 122 233455666666666654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.1 Score=31.73 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhcCChhhHHhhc
Q 035828 759 YYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++..||.+|.+.|++++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y 22 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYY 22 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHH
Confidence 3677888888888888888775
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.08 E-value=1 Score=42.84 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=85.1
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCcchH----HHHHHHHHhcCCcH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-P-IQPKPGVW----GAMLSACSHHGDTK 740 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~----~~l~~~~~~~g~~~ 740 (781)
-.|+..+|-..++++++++ +.|...+.-.=+++.-.|+.+.-...+++. + -.|+.+.+ ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3578888889999998762 334455555556777788888777777776 3 25555433 23333456799999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 741 MGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+|++..+++.+++|.|.=+.-.++.++...|+++|+.+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHH
Confidence 999999999999999999999999999999999998763
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.073 Score=45.72 Aligned_cols=84 Identities=11% Similarity=0.144 Sum_probs=49.2
Q ss_pred HHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhH
Q 035828 79 IVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKC 158 (781)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 158 (781)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++....++.... .-...++..|-+.|.++.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455556666666777777776665555666777777777777666777776663322 2334455555555555555
Q ss_pred HHHHHHH
Q 035828 159 LLYFREM 165 (781)
Q Consensus 159 ~~~~~~m 165 (781)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.75 E-value=17 Score=37.03 Aligned_cols=35 Identities=14% Similarity=-0.022 Sum_probs=30.1
Q ss_pred cCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 736 HGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
.++.+.+...+.++.+..|....++..++..+...
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999888876654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.54 E-value=4 Score=41.72 Aligned_cols=75 Identities=11% Similarity=0.111 Sum_probs=54.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCCC---cchHHHHHHHHHhcCCcHHHHHHHHHHhccC-CCCCchHHHHHHHHHh
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL-PIQPK---PGVWGAMLSACSHHGDTKMGKQVAELLFKLE-PENVGYYISLSNMYVA 769 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 769 (781)
..|..++-+.|+.+||++.++++ +..|. ..+...++..+...+.+.++..++.+--+.. |.+....++-+.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 35667777889999999988887 33332 2356778888888999999999988876554 7777777666555433
|
The molecular function of this protein is uncertain. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.55 Score=39.17 Aligned_cols=72 Identities=14% Similarity=0.003 Sum_probs=55.5
Q ss_pred hhcCChHHHHHHHHhC-CCCCCcchHHHH-HHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 035828 702 GRSGKLQEAYEFIKNL-PIQPKPGVWGAM-LSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRW 773 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 773 (781)
...++.+++..+++.+ .+.|+......+ ++.+...|++++|.++++++.+..|..|..--.++..+...|+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 5688999999999888 356665544333 33466789999999999999888888887778888888888764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.27 Score=29.84 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
+..+...+.+.|++++|+.++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777777777777777777775433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.17 E-value=1.7 Score=37.05 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHh---cccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHH
Q 035828 653 PTKSSVISLLSAC---SHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWG 727 (781)
Q Consensus 653 p~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 727 (781)
.+..+.+.|+..+ .+.++.+++..++..+. -+.|.. ..-..-...+.+.|+|.+|+.+|+++ ...|......
T Consensus 5 C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~k 81 (160)
T PF09613_consen 5 CSDEIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAK 81 (160)
T ss_pred CcHHHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHH
Confidence 3445666666554 45789999999999986 458874 34444556678999999999999998 4566666677
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 728 AMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
.|...|.....-..=..+.+++.+..+ ++.+...+..+..
T Consensus 82 ALlA~CL~~~~D~~Wr~~A~evle~~~-d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 82 ALLALCLYALGDPSWRRYADEVLESGA-DPDARALVRALLA 121 (160)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 777777765554455555666666555 3444444444433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.11 E-value=19 Score=36.41 Aligned_cols=125 Identities=12% Similarity=0.119 Sum_probs=63.3
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHHhC-CCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035828 571 SIVSILSACTQLGVLRHGKQIHGHVFHLG-FQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS 649 (781)
Q Consensus 571 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 649 (781)
.|...+.+..+..-++.|+.+|.++.+.| +.+++.+++++++-++ .|+..-|..+|+-=..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-----------------~~d~~ta~~ifelGl~- 460 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-----------------TGDRATAYNIFELGLL- 460 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-----------------cCCcchHHHHHHHHHH-
Confidence 34445555555556666777777766666 4455554444444443 2455555555554332
Q ss_pred CCCCCHHH-HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHH
Q 035828 650 GIRPTKSS-VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFI 714 (781)
Q Consensus 650 g~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 714 (781)
.-||... .+-.+.-+.+.++-+.|..+|+...++..-.--..+|..+++--..-|++..|..+=
T Consensus 461 -~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe 525 (660)
T COG5107 461 -KFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLE 525 (660)
T ss_pred -hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHH
Confidence 2333322 222333444556666666666655443111111356666666656666665555443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.12 Score=44.31 Aligned_cols=87 Identities=9% Similarity=0.074 Sum_probs=57.4
Q ss_pred hHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhcc
Q 035828 42 NAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKC 121 (781)
Q Consensus 42 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 121 (781)
..+|..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++ ..+..-...++..+.+.
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKH 83 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhc
Confidence 44677777778888888888888876656667778888888888776666666655 22224445666666666
Q ss_pred CChhhHHHHhccCC
Q 035828 122 GDLNSSECTFSGMH 135 (781)
Q Consensus 122 ~~~~~a~~~~~~~~ 135 (781)
|.+++|.-++..+.
T Consensus 84 ~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 84 GLYEEAVYLYSKLG 97 (143)
T ss_dssp TSHHHHHHHHHCCT
T ss_pred chHHHHHHHHHHcc
Confidence 77766666665553
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.94 E-value=16 Score=35.48 Aligned_cols=17 Identities=12% Similarity=-0.076 Sum_probs=10.4
Q ss_pred HHhcCCcHHHHHHHHHH
Q 035828 733 CSHHGDTKMGKQVAELL 749 (781)
Q Consensus 733 ~~~~g~~~~A~~~~~~~ 749 (781)
+.+.++++.|.++++-+
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44566666666666643
|
It is also involved in sporulation []. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.3 Score=26.97 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=18.7
Q ss_pred chHHHHHHHHHhcCChhhHHhhc
Q 035828 758 GYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.....|+.++..+|++++|++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 45678888899999999988775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.20 E-value=8.5 Score=33.51 Aligned_cols=134 Identities=11% Similarity=0.056 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCC--hhhHHHHhccCC
Q 035828 58 LHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGD--LNSSECTFSGMH 135 (781)
Q Consensus 58 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~ 135 (781)
.++.+.+.+.+++|+...|..++..+.+.|.+. .+..+.+.++-+|.......+-.+..... ..-+..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 466777778889999999999999999888644 44556666666666554444433332211 222333444332
Q ss_pred CCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035828 136 CADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKL 203 (781)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 203 (781)
..+..++..+...|++-+|+++.+..... +......++.+....+|...--.++....+.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 25677788889999999999998875321 1222344566666666655555555544443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.43 Score=28.36 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
+|..+...+...|++++|...++++.+++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566777778888888888888888888774
|
... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.75 E-value=17 Score=34.63 Aligned_cols=169 Identities=10% Similarity=0.069 Sum_probs=72.8
Q ss_pred CCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHH
Q 035828 343 NDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAA 422 (781)
Q Consensus 343 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a 422 (781)
|...+.+..+..++.--+..|.+++..-+..++..+...-...+... |..|+. +...+.+|
T Consensus 87 p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~----------------Y~~LVk---~N~~Vv~a 147 (292)
T PF13929_consen 87 PQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFN----------------YWDLVK---RNKIVVEA 147 (292)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchH----------------HHHHHH---hhHHHHHH
Confidence 44445555666666655666666666655555544322221111111 222221 12234556
Q ss_pred HHHHHhhcCC----CCcccHHHHHHHHHh-CCC-hHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHH
Q 035828 423 FSLLQRISHN----SDTSCWNIVIVACTQ-NGH-FQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGL 496 (781)
Q Consensus 423 ~~~~~~~~~~----~~~~~~~~li~~~~~-~~~-~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 496 (781)
+++|+....+ .|......+++.... .+. ...-.++.+-+...-+..++..+...++..++..+++....+++..
T Consensus 148 L~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~ 227 (292)
T PF13929_consen 148 LKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQ 227 (292)
T ss_pred HHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHH
Confidence 6666543221 133333344443333 111 1111222222222211344445555555555555555555555544
Q ss_pred HHHh-cCCCChHHHHHHHHHHHhcCChHHHHHHhh
Q 035828 497 ALKS-LMGLDTRVQNALITMYGRCRDIKSASTVFE 530 (781)
Q Consensus 497 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 530 (781)
.... +..-|...|..+++.....|+..-..++.+
T Consensus 228 ~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 228 CIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred hcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 4433 334445555555555555555444444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.77 Score=29.44 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=9.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 035828 625 SMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 625 ~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
.+...|...|++++|+++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333333333333333333333
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.20 E-value=37 Score=36.95 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHcCCCCCChhhHHHHHHH-hcCccchHHHHHHHHHHHH
Q 035828 451 FQEAIKTFKSMTQQQNASPDSVTLVNVISA-CGNLELAFEGKSLHGLALK 499 (781)
Q Consensus 451 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~ 499 (781)
...|..+++...+.|...+-...-.+...+ .....+.+.|...+..+.+
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 456666777666665332222222223333 4455666666666666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.95 E-value=5 Score=35.69 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=63.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhHHHcCC--CCCc----ch
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS--SVISLLSACSHSGLVDEGLQYYNNMLEEYDV--RPET----EH 693 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~----~~ 693 (781)
.+..+.+.|.+.|+.+.|++.|.++.+....|... .+..+|+.....+++..+...+.+....... +++. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 56778888889999999999999988865555433 5667777888888888888888877544211 1111 12
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
|..| .+...+++.+|-+.|-+.
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2222 234577888888777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.88 E-value=18 Score=33.02 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=10.0
Q ss_pred CCcHHHHHHHHHHhccCCC
Q 035828 737 GDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~~p~ 755 (781)
+|.-.+...+++-.+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4555555555555555554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.71 E-value=21 Score=33.38 Aligned_cols=191 Identities=17% Similarity=0.179 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhhhcC-----CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCH-hHHHHHHH-H
Q 035828 507 RVQNALITMYGRCRDIKSASTVFESCY-----NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNE-ISIVSILS-A 578 (781)
Q Consensus 507 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~-~ 578 (781)
.........+...+.+..+...+.... ......+......+...++...+...+... ...++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 344444445555555555555554432 112233444444444555555555555555 222221 11111111 4
Q ss_pred hcccCchHHHHHHHHHHHHhCCCCC-chHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--H
Q 035828 579 CTQLGVLRHGKQIHGHVFHLGFQEN-SFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT--K 655 (781)
Q Consensus 579 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~ 655 (781)
+...|+++.+...+..... ..|. .. ....+......+...++.+.++..+...... .|+ .
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 202 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNE-------------LAEALLALGALLEALGRYEEALELLEKALKL--NPDDDA 202 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccc-------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--Ccccch
Confidence 4555555555555555533 1111 00 0012223333344455555555555555542 222 3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
..+..+...+...++.+.|...+...... .|+ ...+..+...+...++++++...+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 44444555555555555555555555432 333 223333333333444455555544443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.4 Score=28.64 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=17.7
Q ss_pred CCCC-cchHHHHHHHhhhcCChHHHH
Q 035828 687 VRPE-TEHHVCIVDMLGRSGKLQEAY 711 (781)
Q Consensus 687 ~~p~-~~~~~~l~~~~~~~g~~~~A~ 711 (781)
..|+ ...|..+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3565 567777777777777777775
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.14 E-value=27 Score=34.01 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=73.9
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCC
Q 035828 581 QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS--------GIR 652 (781)
Q Consensus 581 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------g~~ 652 (781)
+.|+.+.|...+.+........++.....|... .|+.=...+.+..++++|..++++..+- ...
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~--------~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~ 76 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARV--------CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLS 76 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHH--------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccC
Confidence 345555555555555443222222223333333 2555555554444888887777765442 233
Q ss_pred CCH-----HHHHHHHHHhcccCc---HHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 653 PTK-----SSVISLLSACSHSGL---VDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 653 p~~-----~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
|+. .++..++.++...+. .++|.++++.+..+++-+| ..+..-++.+.+.++.+++.+.+.+|
T Consensus 77 ~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 77 PDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHH
Confidence 443 367777888877664 4567777777766644333 44545566666688888888888887
|
It is also involved in sporulation []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.84 E-value=1 Score=30.21 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=28.8
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
+.-++.+.|++++|.+..+.+++.+|++..+..+...+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 45567899999999999999999999998876655443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.65 E-value=1.4 Score=41.71 Aligned_cols=102 Identities=14% Similarity=0.106 Sum_probs=68.1
Q ss_pred CCCCCCCccchhHHHHHhhcCCchhHHHHhhhhc-CCCcc-----hhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChh
Q 035828 1 RGFLAHLPTSTSLLTAYSNVSYFESSLALFYETC-NKDVV-----TWNAMITACVENRCVVMGLHFFGEMVEEGIRFDST 74 (781)
Q Consensus 1 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 74 (781)
+|...++.+...++..-....+++++...+-++. +|+.. +-.+.++-|.+ -+++.++.++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 4566666777777777766777777777776643 33221 11223333333 36677888877777788888888
Q ss_pred hHHHHHHHHhccCcccchhHHHHHHHHhc
Q 035828 75 TLLIIVSALTQMNCLKQGRVVHCLSIKAG 103 (781)
Q Consensus 75 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 103 (781)
+++.+|..+.+.+++.+|.++.-+|..+.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888877777776654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.53 E-value=30 Score=33.86 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=50.9
Q ss_pred HHHHHHhhc----C--CCCCHhHHHHHHHHhccc--CchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHH
Q 035828 555 RALELFRHL----E--FEPNEISIVSILSACTQL--GVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSM 626 (781)
Q Consensus 555 ~A~~~~~~~----~--~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 626 (781)
+|.++|+.| . -.|+...+.+++..-... .-.+.++.+++.+.+.|+..+-.. -+.+-
T Consensus 121 ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~L---------------Q~LS~ 185 (297)
T PF13170_consen 121 RAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDL---------------QFLSH 185 (297)
T ss_pred HHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHH---------------HHHHH
Confidence 445555555 1 345566666666552211 113566777777877777765432 11222
Q ss_pred HHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035828 627 ISAYGYHG---KGWEAIELFHEMCNSGIRPTKSSVISLL 662 (781)
Q Consensus 627 i~~~~~~~---~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 662 (781)
|-++.... ....+.++++.+.+.|+++....|..+.
T Consensus 186 iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 186 ILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 22222111 1456778888888888887766655443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.50 E-value=0.76 Score=26.96 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
-.+..++.+.|+.++|.+.++++++..|++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 345566777888888888888888888864
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=87.29 E-value=15 Score=30.15 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc--CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCC
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL--EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQ 601 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 601 (781)
.....+..+..+|+-+.-.+++.++ .-+|+...+..+..+|.+.|+..++.+++.+.-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3455677788899988888888887 36788888888999999999999999999998888864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.17 E-value=19 Score=31.33 Aligned_cols=38 Identities=5% Similarity=0.100 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHh
Q 035828 94 VVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTF 131 (781)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 131 (781)
++++.+.+.+++|+...+..+|..+.+.|.+.....++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34445556667777777777777777776655544444
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.81 E-value=3.9 Score=36.07 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=49.9
Q ss_pred hcccCcHHHHHHHHHHhHHHcCCCCC---cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCc
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDVRPE---TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDT 739 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~ 739 (781)
+.+.|++++|..-|...++...-.|. ...|..-..++.+.+.++.|++--.+. .+.|+ ...+..-..+|-+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 34556666666666666544111111 234555555566666666666554443 33332 11222223345556667
Q ss_pred HHHHHHHHHHhccCCCCCch
Q 035828 740 KMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~~ 759 (781)
+.|+.-|.++.+++|....+
T Consensus 185 eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHHHHHhCcchHHH
Confidence 77777777777777665443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.71 E-value=1.4 Score=26.05 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
+|..+...+...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.69 E-value=4.5 Score=33.96 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHhc---ccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCChHHHHHHHHhCCC-CCCcchH
Q 035828 652 RPTKSSVISLLSACS---HSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKLQEAYEFIKNLPI-QPKPGVW 726 (781)
Q Consensus 652 ~p~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~ 726 (781)
+.+....+.|+.... ..++.+++..+++.|. -+.|+. ..-..-...+...|+|++|+.+|++..- .+....-
T Consensus 4 qCs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~ 80 (153)
T TIGR02561 4 QCSNRLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYG 80 (153)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHH
Confidence 334455666665443 4789999999999986 457773 3333345567899999999999999943 3344555
Q ss_pred HHHHHHHHh-cCC
Q 035828 727 GAMLSACSH-HGD 738 (781)
Q Consensus 727 ~~l~~~~~~-~g~ 738 (781)
..|...|.. .||
T Consensus 81 kAL~A~CL~al~D 93 (153)
T TIGR02561 81 KALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHHhcCC
Confidence 566555655 344
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.35 E-value=14 Score=39.74 Aligned_cols=98 Identities=23% Similarity=0.378 Sum_probs=50.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCCh
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKS---SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKL 707 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 707 (781)
...+..+.|+++|.+.-+ +.|+.. .+..|+.+-.. .++...++ +.+ |+ .|-..+.+.|.+
T Consensus 298 tDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~El-q~I----gm--------kLn~LlgrKG~l 360 (1226)
T KOG4279|consen 298 TDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLEL-QQI----GM--------KLNSLLGRKGAL 360 (1226)
T ss_pred cchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHH-HHH----HH--------HHHHHhhccchH
Confidence 344556777777777766 666554 34444433221 11221111 111 11 133345667766
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 708 QEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 708 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
++-.++.+-. .+..+-.-++|+.+|.+..+.|+++.|+
T Consensus 361 eklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 361 EKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 6655544321 1223334567777888888888887766
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.20 E-value=1.4 Score=38.60 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=66.3
Q ss_pred HHHhhhcCChHHHHHHHHhC-C-CCCCc-----chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 698 VDMLGRSGKLQEAYEFIKNL-P-IQPKP-----GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
..-+.+.|++++|..-+..+ . +++.. ..|..-..+..+.+..+.|+.-..++++++|....++...+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34567889999998887765 2 33322 23444455667899999999999999999999999999999999999
Q ss_pred CChhhHHhhcC
Q 035828 771 GRWKDAVEIGK 781 (781)
Q Consensus 771 g~~~~A~~l~~ 781 (781)
.++++|++=||
T Consensus 182 ek~eealeDyK 192 (271)
T KOG4234|consen 182 EKYEEALEDYK 192 (271)
T ss_pred hhHHHHHHHHH
Confidence 99999987553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.11 E-value=27 Score=35.43 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=28.8
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhCCC-C--C---CcchHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNLPI-Q--P---KPGVWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
.++..++...-+.|+++-|...+.++.. . + .+...-..+..+...|+.++|...++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555555555554421 1 0 222222333344455555555555555554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.09 E-value=29 Score=32.34 Aligned_cols=279 Identities=13% Similarity=0.076 Sum_probs=147.9
Q ss_pred CCCChhhHHHHHHHh-cCccchHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHhhhcC-------CC
Q 035828 467 ASPDSVTLVNVISAC-GNLELAFEGKSLHGLALKSLMG---LDTRVQNALITMYGRCRDIKSASTVFESCY-------NC 535 (781)
Q Consensus 467 ~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~ 535 (781)
..||...-+..-.+- .+..++++|..-|....+..-. ........++..+.+.|++++..+.+..+. .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 567765544433331 2344677787777776653222 223344566778888888888877776654 12
Q ss_pred C--hhhHHHHHHHHHhCCChhHHHHHHhhc-----CCCCC---HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCC---
Q 035828 536 N--LCTWNCMISAFSQNKAEVRALELFRHL-----EFEPN---EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQE--- 602 (781)
Q Consensus 536 ~--~~~~~~l~~~~~~~~~~~~A~~~~~~~-----~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--- 602 (781)
| ..+.|.++.....+.+.+--.++|+.. +.+-+ ..|-+-|-..+...+.+..-..+++.+.......
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 2 235666666655555555444444332 11111 1122334445555666666666666665432221
Q ss_pred -CchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHh-----cccCcHHHHH
Q 035828 603 -NSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS-GIRPTKSSVISLLSAC-----SHSGLVDEGL 675 (781)
Q Consensus 603 -~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~-----~~~~~~~~a~ 675 (781)
+..--..|++ .|..-|..|...++-.+-..++++...- .-.|.+.... .|+-| .+.|++++|.
T Consensus 182 dD~kKGtQLLE---------iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 182 DDQKKGTQLLE---------IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhccchhhh---------hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHH
Confidence 1111122333 3555677777777777777778776642 2345554443 44544 3568888887
Q ss_pred HHHHHhHHHcCCCCCc-----chHHHHHHHhhhcC----ChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHH
Q 035828 676 QYYNNMLEEYDVRPET-----EHHVCIVDMLGRSG----KLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVA 746 (781)
Q Consensus 676 ~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 746 (781)
.-|-+..+.+.-.-++ --|..|+.++.++| +-.+|. -.+..|.......++.+|.. ++..+-++++
T Consensus 252 TDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 252 TDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred hHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 6666655544332221 24566777777776 112221 11345666677888887754 4444444444
Q ss_pred HHHhccCCCCCchH
Q 035828 747 ELLFKLEPENVGYY 760 (781)
Q Consensus 747 ~~~~~~~p~~~~~~ 760 (781)
..-...--+||.+-
T Consensus 327 ~~~~~~IM~DpFIR 340 (440)
T KOG1464|consen 327 KSNRSNIMDDPFIR 340 (440)
T ss_pred HhhhccccccHHHH
Confidence 43333334455543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.96 E-value=43 Score=34.16 Aligned_cols=89 Identities=19% Similarity=0.195 Sum_probs=51.9
Q ss_pred cCcHHHHHHHHHHhHHHcCCCCCc----chHHHHHHHhhhcCCh-H------HHHHHHHhCCC--CCCcchHHHHHHHHH
Q 035828 668 SGLVDEGLQYYNNMLEEYDVRPET----EHHVCIVDMLGRSGKL-Q------EAYEFIKNLPI--QPKPGVWGAMLSACS 734 (781)
Q Consensus 668 ~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~-~------~A~~~~~~~~~--~p~~~~~~~l~~~~~ 734 (781)
.|+.++|+.++-.+. .+.|+. .-|..+++.+.+..+- . +-++.-+++-. ..+.....-..-...
T Consensus 711 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (831)
T PRK15180 711 EGRLDEALSVLISLK---RIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAM 787 (831)
T ss_pred cccHHHHHHHHHhhh---ccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHh
Confidence 578899999887774 568883 4566777777543311 1 11122222211 122222222222234
Q ss_pred hcCCcHHHHHHHHHHhccC-CCCCch
Q 035828 735 HHGDTKMGKQVAELLFKLE-PENVGY 759 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~~~-p~~~~~ 759 (781)
+..|+.+|.++|+++.+.+ |..|.+
T Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (831)
T PRK15180 788 HLRDYTQALQYWQRLEKVNGPTEPVT 813 (831)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcchH
Confidence 5679999999999999887 665543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.87 E-value=62 Score=35.89 Aligned_cols=58 Identities=5% Similarity=-0.093 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNM 681 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 681 (781)
...-+..-...++++.+...+..|.... .-...-.--+.+++...|+.++|..+|+.+
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444456677777777776664422 223333444555655567777777777765
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.13 E-value=4.3 Score=38.53 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=75.4
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcc-----cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh
Q 035828 397 LGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTS-----CWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS 471 (781)
Q Consensus 397 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~ 471 (781)
.|...+..+...++..-....+++++...+-.++..|+.. +-.+.++.+ -.-++++++.++..=.+-| +-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYG-iF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYG-IFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhc-cccch
Confidence 3555566666666666667788888888888776554321 222333333 3446789999998888888 99999
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhc
Q 035828 472 VTLVNVISACGNLELAFEGKSLHGLALKSL 501 (781)
Q Consensus 472 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 501 (781)
++++.+|+.+.+.+++..|.++...|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999888887776543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.13 E-value=1.3 Score=42.33 Aligned_cols=109 Identities=16% Similarity=0.221 Sum_probs=77.2
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG 737 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 737 (781)
-.+-|.++|.+++|..+|.... .+.| ++.++..-..+|.+.+++..|..=-..+ .+.. -...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999876 4577 6788888889999999888776544433 1111 1224555555555679
Q ss_pred CcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhH
Q 035828 738 DTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDA 776 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 776 (781)
...+|.+-++.++++.|++. .|-..|.+-....|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI----ELKKSLARINSLRER 214 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhh
Confidence 99999999999999999955 444555554444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=84.89 E-value=32 Score=33.80 Aligned_cols=163 Identities=16% Similarity=0.105 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcC-CCC-------hhhHHHHHHHHHhCCChhHHHHHHhhc-C-----CCC--CHhHH
Q 035828 509 QNALITMYGRCRDIKSASTVFESCY-NCN-------LCTWNCMISAFSQNKAEVRALELFRHL-E-----FEP--NEISI 572 (781)
Q Consensus 509 ~~~li~~~~~~g~~~~A~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-----~~p--~~~~~ 572 (781)
|..+.+++.+.-++.+++.+-+-.. -|+ ....-++..++...+.++++++.|+.. . -.| .-..+
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 3344445555555555555443221 111 123334556666677788888888776 1 112 23466
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHH----hCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 573 VSILSACTQLGVLRHGKQIHGHVFH----LGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 573 ~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
..|-+.+....|+++|.-+.....+ .++..-..-|..+. .--|..++-..|+...|.+.-++..+
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~-----------lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS-----------LYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH-----------HHHHHHHHHHhcccccHHHHHHHHHH
Confidence 7777777888888888766554433 23322222233222 12245566777888778777766543
Q ss_pred ----CCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 035828 649 ----SGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNML 682 (781)
Q Consensus 649 ----~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 682 (781)
.|-+|- ......+...|...|+.|.|..-|++..
T Consensus 235 lal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 235 LALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 343332 2345566677778888888888887753
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.54 E-value=6.7 Score=37.41 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHH----HcCCCCCcchHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLE----EYDVRPETEHHVC 696 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 696 (781)
++..++..+...|+++.+.+.++++.. ..| +...|..++.+|.+.|+...|...|+.+.+ ..|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 567788888888999999999999988 444 778899999999999999999999888755 3466666554443
Q ss_pred HHH
Q 035828 697 IVD 699 (781)
Q Consensus 697 l~~ 699 (781)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=83.83 E-value=33 Score=33.56 Aligned_cols=127 Identities=7% Similarity=0.003 Sum_probs=77.3
Q ss_pred chhhhHHHHHHHHHhcCCCchhHHHHHHHHHHh--cC----CHHHHHHHHHhhcCC------CCcccHHHHHHHHHhCCC
Q 035828 383 SLEFGKSIHCWQLKLGFSNNTIGVNALMHMYIN--CG----DLVAAFSLLQRISHN------SDTSCWNIVIVACTQNGH 450 (781)
Q Consensus 383 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~------~~~~~~~~li~~~~~~~~ 450 (781)
.++....+++.+.+.|+.-+..+|-+....... .. ....|.++++.|+.+ ++...+..++.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 355667788889999999888777654333332 22 356688888888654 244445555443 2233
Q ss_pred ----hHHHHHHHHHHHHcCCCCCC-h-hhHHHHHHHhcCccc--hHHHHHHHHHHHHhcCCCChHHHHHH
Q 035828 451 ----FQEAIKTFKSMTQQQNASPD-S-VTLVNVISACGNLEL--AFEGKSLHGLALKSLMGLDTRVQNAL 512 (781)
Q Consensus 451 ----~~~A~~~~~~m~~~~~~~p~-~-~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 512 (781)
.+.+..+|+.+.+.| +..+ . ....-++..+..... +..+..+++.+.+.|+++....|..+
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~-f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAG-FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 456677788888777 4443 3 233333333332222 34677788888888888776665443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.72 E-value=4.3 Score=36.11 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhCC---CCCCcchHH---
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNLP---IQPKPGVWG--- 727 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~--- 727 (781)
..+..+..-|.+.||.++|.+.+.++.+. ...|. ...+..+++.....|++..+...+.++. ..+......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 37888889999999999999999998765 55665 4678889999999999999998887772 122111111
Q ss_pred HHHHH--HHhcCCcHHHHHHHHHHhcc
Q 035828 728 AMLSA--CSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 728 ~l~~~--~~~~g~~~~A~~~~~~~~~~ 752 (781)
....+ +...|++..|-+.+-....-
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 11122 34578999988887776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=83.70 E-value=1.6 Score=31.82 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=32.7
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEF 713 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 713 (781)
...+.++|+..|+..++...-.|+ -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888887776433344 25777788888888888877765
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.07 E-value=10 Score=29.38 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHH
Q 035828 638 EAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVD 699 (781)
Q Consensus 638 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 699 (781)
+..+-+..+-...+.|++....+.++||.+..|+..|..+++.+..+. .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~--~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC--GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cChHHHHHHHHH
Confidence 455666666777799999999999999999999999999999987663 333447777764
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.99 E-value=2.3 Score=24.14 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
.+..+...+...|+++.|...++++.+..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455566666777777777777777776664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.65 E-value=18 Score=36.99 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=30.5
Q ss_pred HHhCCCCCCcc--hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 714 IKNLPIQPKPG--VWGAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 714 ~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
|...+++|... +++.-+..+.|.+++..|..+.++++++.|...
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 44446666533 567777778899999999999999999998754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.41 E-value=47 Score=31.69 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhH-------HHc------------------CCCCC
Q 035828 636 GWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNML-------EEY------------------DVRPE 690 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~------------------~~~p~ 690 (781)
..+|+++|.-+..+. -...+-..++.++....+..+|...+.... ... +...|
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 467888888887742 233455566777777777777766655432 211 11223
Q ss_pred cchHHHHHHHhh-hcCChHHHHHHHHhCC--CCCC-----------------cchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 691 TEHHVCIVDMLG-RSGKLQEAYEFIKNLP--IQPK-----------------PGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 691 ~~~~~~l~~~~~-~~g~~~~A~~~~~~~~--~~p~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
..-|...++..- ..-.++++.+++...+ .-|+ ...+......|..+|.+.+|.++-++++
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 334444444442 2345777777776551 1111 1123344556778999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 751 KLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 751 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
.++|-+.+.+..|...|...|+.-+|.+
T Consensus 307 tldpL~e~~nk~lm~~la~~gD~is~~k 334 (361)
T COG3947 307 TLDPLSEQDNKGLMASLATLGDEISAIK 334 (361)
T ss_pred hcChhhhHHHHHHHHHHHHhccchhhhh
Confidence 9999999999999999999999666554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.20 E-value=1.9 Score=26.94 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
+++.+...+...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344555555555555555555555543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=82.18 E-value=88 Score=34.72 Aligned_cols=87 Identities=10% Similarity=0.117 Sum_probs=52.9
Q ss_pred CCChhHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHh--cccchhhhhhHHHHHHHhcC---------CCChHHHHHHHH
Q 035828 255 NGKFEEAFDLLHEMQLMRS--VEPDIATVVTLISLCA--DSLLLREGRSVHGYAIRRLL---------GYDLLMMNSLMD 321 (781)
Q Consensus 255 ~~~~~~a~~~~~~m~~~~~--~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~ll~ 321 (781)
.+++..|++.++.+..... ..|-...+..++.++. +.+..+.+.+.++.+..... .|...++..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 3788889998888876432 2344445555555544 45556667777766644322 234556666655
Q ss_pred HH--HhcCCHHHHHHHHHhhCC
Q 035828 322 FY--SKSNSLSKAELLFNAIAP 341 (781)
Q Consensus 322 ~~--~~~~~~~~a~~~~~~~~~ 341 (781)
.+ ...|++..+...++.+..
T Consensus 232 l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 44 457887788777766644
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.06 E-value=3 Score=24.51 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.80 E-value=8.3 Score=29.51 Aligned_cols=68 Identities=12% Similarity=0.026 Sum_probs=40.2
Q ss_pred hhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCC--CCeeeHHHHHHHHHHHHHHhc
Q 035828 296 EGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPM--NDLVSWNSMISGLFKEMLYLC 363 (781)
Q Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ll~~l~~~~~~~~ 363 (781)
++++-+..+....+-|++.+..+.+++|.+.+|+..|.++|+.++.+ .....|..+++.+-..+...|
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeikp~l~ELG 94 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIKPTLKELG 94 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHhHHHHHHC
Confidence 44455555555666777777777777777777777777777766531 122345555554444433333
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.45 E-value=3.9 Score=39.06 Aligned_cols=75 Identities=9% Similarity=-0.004 Sum_probs=51.5
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
....++-.+|.+.++++.|+...+.+ ...|+ +.-+.--+-.+.+.|.+..|..-++..++..|++|.+-.....+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34556666777888888888877766 44454 33455555567777888888888888888888877766554444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.18 E-value=4.9 Score=38.62 Aligned_cols=96 Identities=15% Similarity=0.053 Sum_probs=62.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcC
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSG 705 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 705 (781)
+.|.+.|++++|++.|..-.. +.| |.+++..-..+|.+.+.+..|..-.+..+.- .-. ...|+.-..+-...|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---hHHHHHHHHHHHHHHHHHh
Confidence 458999999999999998877 677 8899999999999999988887777665422 110 223333333333344
Q ss_pred ChHHHHHHHHhC-CCCCCcchHHH
Q 035828 706 KLQEAYEFIKNL-PIQPKPGVWGA 728 (781)
Q Consensus 706 ~~~~A~~~~~~~-~~~p~~~~~~~ 728 (781)
+..+|.+=.+.. .+.|+...+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHH
Confidence 455554444333 46777544433
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.16 E-value=6.2 Score=30.50 Aligned_cols=69 Identities=13% Similarity=0.025 Sum_probs=38.6
Q ss_pred hhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC--CCCeeeHHHHHHHHHHHHHHhcc
Q 035828 296 EGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP--MNDLVSWNSMISGLFKEMLYLCS 364 (781)
Q Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~ 364 (781)
+.++-+..+....+-|++.+..+.+.+|.+.+|+..|.++|+.++. ......|.-+++.+-..+...|+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElkPtl~ELGI 98 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELKPTLEELGI 98 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHhhHHHHhCC
Confidence 3444455555556677777777777777777777777777777654 11122566666655544444444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.01 E-value=49 Score=31.03 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=30.3
Q ss_pred HHHHhhhcCChHHHHHHHHhC----CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL----PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
+.+.|.+.|.+.-|..-++++ ...+ ....+-.+..++.+.|-.++|.....-+-...|+++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 445556666666555555444 1111 112344445555666666666665554444445544
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.94 E-value=6.6 Score=40.78 Aligned_cols=129 Identities=13% Similarity=0.024 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHH
Q 035828 636 GWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEF 713 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 713 (781)
.+-+-.++..|..- +-|-..+.|...--+...|+...|...+.... ...|. ......|.+.+.+.|-..+|-.+
T Consensus 589 ~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~ 664 (886)
T KOG4507|consen 589 EEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKL 664 (886)
T ss_pred HHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHH
Confidence 34455566666532 33433344433223345899999999998876 45664 35677889999999988899887
Q ss_pred HHhC-C-CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 714 IKNL-P-IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 714 ~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
+.+. . ....+.+.-.+.+++....+.++|++.++.+.++.|+++..-..|-.+-+
T Consensus 665 l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 665 LLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 7654 3 23445577788888889999999999999999999999998887766654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.83 E-value=11 Score=33.68 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCC--CCCcchHHHHHHHhhhcCChHHHH
Q 035828 635 KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDV--RPETEHHVCIVDMLGRSGKLQEAY 711 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 711 (781)
.-++|.+.|-++...+.--++.....|..-|. ..|.+++.+++.+.++-..- .+++..+.+|+..+.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34678888888887765556555555554444 56888888888888765322 356788888888888888888774
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.60 E-value=47 Score=30.56 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=15.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
+..+++.+|+++|++.-...+..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34567788888888876654433
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=80.32 E-value=2.2 Score=32.73 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=37.0
Q ss_pred CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC--CCchHHHHHHHHHhcCChh
Q 035828 722 KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE--NVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 774 (781)
|....-.+...+...|+++.|.+.+-++++.+|+ +..+-..|..++...|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4456667777788899999999999999988754 4667777777777777643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 9e-13
Identities = 81/602 (13%), Positives = 184/602 (30%), Gaps = 145/602 (24%)
Query: 189 ELSYGKVIHAL--GIKLGY-----EDSPYVSVTNSLIS-MYSQCGDIEAAERAFWGMTCK 240
+ Y ++ + +D P ++ I + + R FW + K
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 241 DVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVV---TLISLCADSLLLREG 297
++ F + + L +P + T + L D+ + +
Sbjct: 75 Q----EEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 298 ---RSVHGYAIRRLLGYDLLMMNSL----MDFYSKSNSLSKAELLFNAIAP-MNDLVSWN 349
R +R+ L +L ++ + K+ ++ L + M+ + W
Sbjct: 130 NVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWL 187
Query: 350 SM-----ISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTI 404
++ + + + L Q + S N + ++ +L+ +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA----ELRRLLKS--- 240
Query: 405 GVNALMHMYINCGDLVAAFSLLQRISHN-SDTSCWNIVIVAC-----TQNGHFQEAIKTF 458
Y NC LL + N + WN ++C T+ + +
Sbjct: 241 ------KPYENC--------LL--VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 459 KSMTQQQNASPDSVT-------LVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNA 511
+ + ++T L+ + C +L E + + L S++ R A
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRL-SIIAESIRDGLA 342
Query: 512 LITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLE-FEPNE- 569
+ + + +T+ ES N AE R ++F L F P+
Sbjct: 343 TWDNW-KHVNCDKLTTIIESSLNV-------------LEPAEYR--KMFDRLSVFPPSAH 386
Query: 570 -----ISIV----------SILSACTQLGVL-RHGKQ----IHGHVFHLGFQENSFIS-- 607
+S++ +++ + ++ + K+ I L + + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 608 SALLDMYSNCKSNAAWS---SMISAY-----GYHGKGWEAIELFHEM------------- 646
+++D Y+ K+ + + Y G+H K E E
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 647 -CNSGI-RPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVC-IVDMLGR 703
+ S+++ L L++Y + + D P+ E V I+D L +
Sbjct: 507 IRHDSTAWNASGSILNTLQ--------Q--LKFYKPYICDND--PKYERLVNAILDFLPK 554
Query: 704 SG 705
Sbjct: 555 IE 556
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 5e-05
Identities = 37/275 (13%), Positives = 79/275 (28%), Gaps = 103/275 (37%)
Query: 504 LDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNC------MISAFSQNKAEVRAL 557
+D + +DI S VFE + N +C S S K E+
Sbjct: 7 MDFETGE----HQYQYKDILS---VFEDAFVDNF---DCKDVQDMPKSILS--KEEID-- 52
Query: 558 ELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC 617
H+ + +S L +L +++ Q+ F+ L Y
Sbjct: 53 ----HIIMSKDAVSGTLRLFWT----LLSKQEEM--------VQK--FVEEVLRINYK-- 92
Query: 618 KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQY 677
+ I T+ + +
Sbjct: 93 -----FL------------MSPI---KTEQRQPSMMTRMYI-----------------EQ 115
Query: 678 YNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHG 737
+ + D + +++V + KL++A + L +P V ++ G
Sbjct: 116 RDRLYN--DNQVFAKYNVSRLQPYL---KLRQA---LLEL--RPAKNV---LI-----DG 157
Query: 738 DTKMGKQV--AELL--FKLE---PENVGYYISLSN 765
GK ++ +K++ + ++++L N
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKN 191
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 2e-07
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 7/129 (5%)
Query: 367 SFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLL 426
L +L SL+ ++ + S + A + L A LL
Sbjct: 91 WEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLL 150
Query: 427 QRISHNS------DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISA 480
+N V++ + G F+E + + + +PD ++ +
Sbjct: 151 VVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV-KDAGLTPDLLSYAAALQC 209
Query: 481 CGNLELAFE 489
G +
Sbjct: 210 MGRQDQDAG 218
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.6 bits (119), Expect = 2e-06
Identities = 14/167 (8%), Positives = 49/167 (29%), Gaps = 13/167 (7%)
Query: 557 LELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSN 616
+ + +++ C L + L LL +
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL------LVVHHGQRQKRKLLTL--- 165
Query: 617 CKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQ 676
+++++ + G E + + + ++G+ P S + L ++
Sbjct: 166 ----DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
Query: 677 YYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKP 723
+ + ++ + ++ R+ L+ ++ + P+
Sbjct: 222 RCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.8 bits (117), Expect = 3e-06
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 15/104 (14%)
Query: 215 NSLISMYSQCGDIEAAERAFWGM-------TCKDVVSWNAIIDGFALNGKFEEAFDLLHE 267
+ + A + +NA++ G+A G F+E +L
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 268 MQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGY 311
++ + PD+ + + R+ + I R L
Sbjct: 191 VK-DAGLTPDLLSYAAALQCMG-----RQDQDAG--TIERCLEQ 226
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.1 bits (97), Expect = 8e-04
Identities = 11/93 (11%), Positives = 25/93 (26%), Gaps = 7/93 (7%)
Query: 98 LSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMH-------CADTVSWNTIMSGCL 150
+A + F L + H +N +M G
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 151 HNNYPEKCLLYFREMGWSGEQADNVSLSSAVAA 183
++ + + +G D +S ++A+
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 1e-06
Identities = 21/171 (12%), Positives = 49/171 (28%), Gaps = 8/171 (4%)
Query: 610 LLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG 669
+ + + S Y Y A+ H+ + +
Sbjct: 91 EMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMA------MTVQILLKLD 144
Query: 670 LVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL--PIQPKPGVWG 727
+D + M ++ + T+ V + KLQ+AY + + P +
Sbjct: 145 RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN 204
Query: 728 AMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778
+ G + + V + + + I+L + LG+ +
Sbjct: 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 56/397 (14%), Positives = 115/397 (28%), Gaps = 46/397 (11%)
Query: 390 IHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQR-ISHNSDTSCWNIVIVACTQN 448
+ L + N L +Y GD A LL + +N ++C + +
Sbjct: 104 AFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKL 163
Query: 449 GHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRV 508
+Q A+ + ++ L+ G ++L L G +L
Sbjct: 164 YDWQGALNLLGETNPFRKDEKNANKLLM---QDGGIKLEASMCYLRGQVYTNLS----NF 216
Query: 509 QNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPN 568
A Y + ++ ++S E +L L +
Sbjct: 217 DRA-KECYKEALMV----------DAKCYEAFDQLVSNHLLTADE--EWDLVLKLNYSTY 263
Query: 569 EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMIS 628
+ L + L + + + E L + KS+
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSHE----------DELRRAEDYLSSINGLEKSSDLLLCKAD 313
Query: 629 AYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSAC-SHSGLVDEGLQYYNNMLEEYDV 687
+ + + + ++ I P V L A SG ++ N++++ +
Sbjct: 314 TLFVRSRFIDVLAITTKILE--IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371
Query: 688 RPETEHHVCIVDMLGRSGKLQEAYE-FIKNLPIQPK-PGVWGAMLSACSHHGDTKMGKQV 745
+ T + + K+ EA F K+ + P+ W + + G+
Sbjct: 372 KAVT--WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ---- 425
Query: 746 AELLFK----LEPENVGYYISLSNMYVALGRWKDAVE 778
A + L Y+ L ++ LG A E
Sbjct: 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE 462
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 781 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.6 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.56 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.49 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.44 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.42 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.41 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.41 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.38 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.38 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.38 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.37 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.3 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.3 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.29 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.27 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.26 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.24 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.24 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.22 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.17 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.14 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.13 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.13 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.11 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.09 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.04 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.03 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.99 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.9 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.88 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.81 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.81 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.81 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.78 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.75 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.75 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.69 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.68 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.67 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.66 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.65 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.65 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.65 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.65 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.6 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.6 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.59 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.58 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.57 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.54 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.5 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.48 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.48 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.47 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.45 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.45 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.44 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.43 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.42 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.41 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.39 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.39 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.37 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.34 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.34 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.31 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.3 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.27 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.27 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.26 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.25 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.24 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.24 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.22 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.22 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.19 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.19 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.17 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.15 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.15 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.13 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.12 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.11 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.11 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.1 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.1 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.1 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.1 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.08 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.07 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 98.02 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.02 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.01 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.0 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.95 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.94 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.92 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.9 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.85 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.83 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.79 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.78 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.74 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.73 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.69 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.65 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.61 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.59 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.5 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.49 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.44 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.44 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.4 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.38 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.37 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.36 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.15 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.08 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.03 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.0 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.9 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.87 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.81 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.75 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.63 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.57 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.41 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.27 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.26 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.18 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.11 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.97 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.77 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.34 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.23 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.7 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.15 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.74 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.38 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.38 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.33 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.27 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.12 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.93 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.46 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.41 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.05 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.4 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.31 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 88.05 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.01 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.97 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.5 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.3 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.17 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.13 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.66 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.37 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 85.24 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 85.19 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 84.64 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.22 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.19 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.82 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.81 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.42 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.73 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=355.79 Aligned_cols=499 Identities=7% Similarity=-0.068 Sum_probs=327.3
Q ss_pred hhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHH
Q 035828 118 YAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIH 197 (781)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 197 (781)
+.+.|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45667778888888888888999999999999999999999999999984 5578888889999999999999999998
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC-------------------CcccHHHHHHHHHhCCCh
Q 035828 198 ALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCK-------------------DVVSWNAIIDGFALNGKF 258 (781)
Q Consensus 198 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~ 258 (781)
+.+... + ++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 141 ~~~~~~--~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 141 TKEDLY--N--RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHTCGG--G--TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcc--c--cchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 876543 2 34889999999999999999999999965433 256677777777777777
Q ss_pred hHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhcccchhh--hhhH-HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 035828 259 EEAFDLLHEMQLMRSVEPD-IATVVTLISLCADSLLLRE--GRSV-HGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAEL 334 (781)
Q Consensus 259 ~~a~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 334 (781)
++|++.|++|.+. .|+ ...+..+...+...+..+. +..+ +..+...+..+...+|
T Consensus 217 ~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------------ 275 (597)
T 2xpi_A 217 DRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY------------------ 275 (597)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHh---CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHH------------------
Confidence 7777777777663 233 2233333322222211111 1111 2222222222222333
Q ss_pred HHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 035828 335 LFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYI 414 (781)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 414 (781)
+.++..|.
T Consensus 276 ------------------------------------------------------------------------~~~~~~~~ 283 (597)
T 2xpi_A 276 ------------------------------------------------------------------------MLKLNKTS 283 (597)
T ss_dssp ------------------------------------------------------------------------HTTSCTTT
T ss_pred ------------------------------------------------------------------------HHHHHHHc
Confidence 33333444
Q ss_pred hcCCHHHHHHHHHhhcCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHH
Q 035828 415 NCGDLVAAFSLLQRISHN-SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSL 493 (781)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 493 (781)
+.|++++|.++|+++... ++..+|+.++..|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|++++|..+
T Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp THHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred CcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 444444555555444221 455566666666666666666666666666543 22445555556666666666666666
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCH
Q 035828 494 HGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNE 569 (781)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~ 569 (781)
++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++ ...|+
T Consensus 362 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 439 (597)
T 2xpi_A 362 SNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG- 439 (597)
T ss_dssp HHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-
Confidence 65555332 3355666667777777777777777776553 234456666666666666666666666655 33331
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035828 570 ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS 649 (781)
Q Consensus 570 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 649 (781)
+..+|+.++..|.+.|++++|+++|+++.+.
T Consensus 440 -------------------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 440 -------------------------------------------------THLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp -------------------------------------------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2225677777778888888888888888764
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHc---CCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-C
Q 035828 650 GIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEY---DVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-K 722 (781)
Q Consensus 650 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 722 (781)
. +.+..+|..++..|.+.|++++|.++++++.+.. +..|+ ..+|..++.+|.+.|++++|++.++++ ...| +
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 2 3356788888888888888888888888886642 44666 578888999999999999999888876 3334 6
Q ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 723 PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 723 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
..+|..++..|.+.|++++|.+.++++.+++|+++.++..|+.+|..
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 77899999999999999999999999999999999999999998854
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=343.22 Aligned_cols=491 Identities=7% Similarity=-0.035 Sum_probs=393.5
Q ss_pred HHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhH
Q 035828 221 YSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSV 300 (781)
Q Consensus 221 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~ 300 (781)
+.+.|.+..+...+..++.+++..|+.++..+.+.|++++|..+|++|.. ..|+..++..+..++.+.|++++|..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 44567777788888888888899999999999999999999999999986 678999999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCC
Q 035828 301 HGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNS 380 (781)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~ 380 (781)
++.+... +++..+++.++.+|.+.|++++|.++|+++...... ..++..
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------------------------~~~~~~ 188 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----------------------------EKNANK 188 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------------------------------------
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----------------------------cccccc
Confidence 9987643 678899999999999999999999999964330100 000000
Q ss_pred CcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-CC-CcccHHHHHHHHHhCCChHHHHH--
Q 035828 381 PESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISH-NS-DTSCWNIVIVACTQNGHFQEAIK-- 456 (781)
Q Consensus 381 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~A~~-- 456 (781)
.++ ...|..++..+++.++.+|.+.|++++|.++|+++.. .| +...+..+...+...+..+.+..
T Consensus 189 ~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (597)
T 2xpi_A 189 LLM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLK 257 (597)
T ss_dssp --C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ccc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHh
Confidence 011 1134566888999999999999999999999999843 24 34445555554444333322221
Q ss_pred H-HHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC--
Q 035828 457 T-FKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY-- 533 (781)
Q Consensus 457 ~-~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 533 (781)
+ +..+...+ ..+...+|..++..|.+.|++++|..+++.+.+. +++..+++.++.+|.+.|++++|.++|+++.
T Consensus 258 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 258 LNYSTYSKED-AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334 (597)
T ss_dssp SCTHHHHGGG-HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcccccch-HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Confidence 1 44554444 4555667777788899999999999999998766 5789999999999999999999999999886
Q ss_pred -CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCC-CCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHH
Q 035828 534 -NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFE-PNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSAL 610 (781)
Q Consensus 534 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 610 (781)
..+..+|+.++.++.+.|+.++|.++++++ +.. .+..++..+...+.+.|++++|.++|+.+.+... +
T Consensus 335 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~------- 405 (597)
T 2xpi_A 335 DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP--Q------- 405 (597)
T ss_dssp CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T-------
T ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--C-------
Confidence 446789999999999999999999999999 544 4678899999999999999999999999987543 2
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-
Q 035828 611 LDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP- 689 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p- 689 (781)
+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..+|..++.+|.+.|++++|.++|+++.+. .|
T Consensus 406 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 473 (597)
T 2xpi_A 406 --------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL---FQY 473 (597)
T ss_dssp --------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCC
T ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 33479999999999999999999999999853 347789999999999999999999999999866 44
Q ss_pred CcchHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC--cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchH
Q 035828 690 ETEHHVCIVDMLGRSGKLQEAYEFIKNL-------PIQPK--PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 690 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
+..+|..++..|.+.|++++|+++++++ +..|+ ..+|..++..|.+.|++++|...++++.+.+|+++.++
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 4688999999999999999999999887 44777 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHhhc
Q 035828 761 ISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~l~ 780 (781)
..++.+|.+.|++++|.+.+
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=246.33 Aligned_cols=212 Identities=13% Similarity=0.143 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhh
Q 035828 453 EAIKTFKSMTQQQNASPD-SVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFES 531 (781)
Q Consensus 453 ~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 531 (781)
.+..+.+++.+.+ ..+. ...++.+|++|++.|++++|.++|++|.+.|++||..+|++||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 8 PSENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred hHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3445556666665 4433 3457788888888888888888888888888888888889998888877764332
Q ss_pred cCCCChhhHHHHHHHHHhCCChhHHHHHHhhc---CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHH
Q 035828 532 CYNCNLCTWNCMISAFSQNKAEVRALELFRHL---EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISS 608 (781)
Q Consensus 532 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 608 (781)
.+.+..++|.++|++| |+.||..||+++|.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~--- 141 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR--- 141 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH---
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc---
Confidence 1234567788888888 699999999999999999999999999999999999998877
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCC
Q 035828 609 ALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVR 688 (781)
Q Consensus 609 ~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 688 (781)
+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+. +..
T Consensus 142 -------------tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ 207 (501)
T 4g26_A 142 -------------SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQ 207 (501)
T ss_dssp -------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSS
T ss_pred -------------eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCC
Confidence 677788888889999999999999999999999999999999999999999999999999877 999
Q ss_pred CCcchHHHHHHHhhhc
Q 035828 689 PETEHHVCIVDMLGRS 704 (781)
Q Consensus 689 p~~~~~~~l~~~~~~~ 704 (781)
|+..||+.++..|...
T Consensus 208 ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 208 VSKSTFDMIEEWFKSE 223 (501)
T ss_dssp BCHHHHHHHHHHHHSH
T ss_pred cCHHHHHHHHHHHhcC
Confidence 9999999999888753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-24 Score=222.34 Aligned_cols=280 Identities=15% Similarity=0.162 Sum_probs=186.9
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhh-HHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 035828 437 CWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVT-LVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITM 515 (781)
Q Consensus 437 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 515 (781)
.|..+...+.+.|++++|+..|+++.+. .|+... +..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 103 GYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCV 178 (388)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4555555666666666666666666553 243322 2223333334444444444444443321 1123334444444
Q ss_pred HHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCC-HhHHHHHHHHhcccCchHHHHHHHHH
Q 035828 516 YGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPN-EISIVSILSACTQLGVLRHGKQIHGH 594 (781)
Q Consensus 516 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 594 (781)
+.+.|++++|...|+++. ...|+ ...+..+...+...|++++|...++.
T Consensus 179 ~~~~g~~~~A~~~~~~al------------------------------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAV------------------------------TLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HHTTTCHHHHHHHHHHHH------------------------------HHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH------------------------------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444444444332 22232 23333444444444555555555544
Q ss_pred HHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHH
Q 035828 595 VFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDE 673 (781)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~ 673 (781)
..+... + +..+|..+...+...|++++|++.|+++.+. .| +..++..+..++.+.|++++
T Consensus 229 al~~~p--~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 229 ALSLSP--N---------------HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHCT--T---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHhhCc--C---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 444321 1 2225777888889999999999999999884 45 46689999999999999999
Q ss_pred HHHHHHHhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 674 GLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 674 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
|.+.++++++. .| +..++..++..+.+.|++++|++.++++ ...| +...+..++..+.+.|++++|...++++.
T Consensus 290 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 290 AEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999876 45 4688999999999999999999999987 4555 45688999999999999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhcCC
Q 035828 751 KLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 751 ~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
++.|+++.++..++.+|...|+
T Consensus 367 ~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred hhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999988774
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-27 Score=248.61 Aligned_cols=210 Identities=8% Similarity=0.020 Sum_probs=127.0
Q ss_pred hhHHHHHHHHhcCCCCCh-hhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccC
Q 035828 56 MGLHFFGEMVEEGIRFDS-TTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGM 134 (781)
Q Consensus 56 ~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 134 (781)
.+..+.+++.++++.++. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 455666777777765543 457888888888888888888888888888888888888888888877654321
Q ss_pred CCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHH
Q 035828 135 HCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVT 214 (781)
Q Consensus 135 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~ 214 (781)
.+.+.++.|.++|++|.+.|+.||..||+.+|.+|++.|+++.|..+++.|.+.|+.|+ ..+|
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty 143 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR--LRSY 143 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--HHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--ccee
Confidence 23456788999999999999998877777777777777777777777777777766544 5555
Q ss_pred HHHHHHHHhcCChhHHHHHhccCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 035828 215 NSLISMYSQCGDIEAAERAFWGMT----CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCAD 290 (781)
Q Consensus 215 ~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 290 (781)
+++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|++.+ +.|+..||+.++..++.
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHS
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhc
Confidence 555555555555444444444443 3344444444444444444444444444444444 44444444444444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=218.23 Aligned_cols=346 Identities=13% Similarity=0.072 Sum_probs=293.6
Q ss_pred HHHHHhcCCHHHHHHHHHhhcC-CCC-cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccch
Q 035828 410 MHMYINCGDLVAAFSLLQRISH-NSD-TSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELA 487 (781)
Q Consensus 410 i~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 487 (781)
...+.+.|++++|...+..+.. .|+ ...+..+...+...|++++|...++...+. .+.+...+..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 4456778999999988877632 353 455666777888899999999999888875 345667888888999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC--CC-ChhhHHHHHHHHHhCCChhHHHHHHhhc-
Q 035828 488 FEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY--NC-NLCTWNCMISAFSQNKAEVRALELFRHL- 563 (781)
Q Consensus 488 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 563 (781)
++|...++.+.+.. +.+...+..+..++.+.|++++|.+.|+++. .| +...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999888753 2345678889999999999999999998876 33 3457788888899999999999999999
Q ss_pred CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHH
Q 035828 564 EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIEL 642 (781)
Q Consensus 564 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 642 (781)
...| +..++..+...+...|+++.|...++.+.+.+. + +...|..+...+...|++++|+..
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~---------------~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--N---------------FLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--T---------------CHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C---------------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666 467888899999999999999999999988653 2 223688888899999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-C-
Q 035828 643 FHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-P- 718 (781)
Q Consensus 643 ~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 718 (781)
+++... ..| +..++..+..++...|++++|.+.++++++. .|+ +..|..++..+.+.|++++|++.++++ .
T Consensus 226 ~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 226 YLRALS--LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHh--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999987 456 4678999999999999999999999999854 665 578999999999999999999999987 3
Q ss_pred CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 719 IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 719 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+++..++..++..+...|++++|...++++.+..|+++.++..++.+|.+.|++++|++.+
T Consensus 301 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999875
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=211.83 Aligned_cols=445 Identities=9% Similarity=-0.043 Sum_probs=275.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHH
Q 035828 243 VSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDF 322 (781)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 322 (781)
..+......+.+.|++++|+..|+++.. ..||..++..+..++.+.|+++.|...++.+.+.++ .+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALE---LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh---cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 3456667788889999999999999988 457888888888889999999999999998888753 366788888899
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCc
Q 035828 323 YSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNN 402 (781)
Q Consensus 323 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 402 (781)
|...|++++|...|+.+.. .+ +++
T Consensus 83 ~~~~g~~~~A~~~~~~~~~-------------------------------------------------------~~-~~~ 106 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSL-------------------------------------------------------NG-DFN 106 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHH-------------------------------------------------------SS-SCC
T ss_pred HHHHhhHHHHHHHHHHHHh-------------------------------------------------------cC-CCc
Confidence 9999999999999887754 00 111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhh---cCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--------C-
Q 035828 403 TIGVNALMHMYINCGDLVAAFSLLQRI---SHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASP--------D- 470 (781)
Q Consensus 403 ~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p--------~- 470 (781)
......++..+........+.+.+..+ ...|+...+..-...............+...+.... ..+ +
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 185 (514)
T 2gw1_A 107 DASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK-PELTFANYDESNE 185 (514)
T ss_dssp GGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC-CCCCCSSCCSSCH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC-HHHHHHHhcCCcH
Confidence 111122222222221122222222111 111222222221111112222222222222221111 111 1
Q ss_pred hhhHHHHHHHhc---CccchHHHHHHHHHHHH-----hcC--------CCChHHHHHHHHHHHhcCChHHHHHHhhhcC-
Q 035828 471 SVTLVNVISACG---NLELAFEGKSLHGLALK-----SLM--------GLDTRVQNALITMYGRCRDIKSASTVFESCY- 533 (781)
Q Consensus 471 ~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 533 (781)
...+......+. +.|+++.|...++.+.+ ..- +.+...+..+...+...|++++|...++.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 222222222222 47888888888888776 211 2234566667777888888888888887664
Q ss_pred -CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHH
Q 035828 534 -NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSAL 610 (781)
Q Consensus 534 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 610 (781)
.|+...|..+...+...|++++|+..+++. ...| +...+..+...+...|+++.|...++...+....
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------- 336 (514)
T 2gw1_A 266 LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE--------- 336 (514)
T ss_dssp HCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS---------
T ss_pred hCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh---------
Confidence 233567777777788888888888888877 5444 4456666777777778888888888777765432
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC
Q 035828 611 LDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE 690 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 690 (781)
+..+|..+...+...|++++|+..++++.+. .+.+...+..+...+...|++++|...++++.+...-.|+
T Consensus 337 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 337 --------NIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp --------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred --------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 1225677777777888888888888877763 1224556777777777788888888888877655222222
Q ss_pred ----cchHHHHHHHhhh---cCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHH
Q 035828 691 ----TEHHVCIVDMLGR---SGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 691 ----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
...+..++..+.. .|++++|++.++++ ...| +...+..+...+...|++++|...++++.++.|+++..+.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 2267777777777 78888888777765 2333 4456677777777788888888888888888887777766
Q ss_pred HHHHH
Q 035828 762 SLSNM 766 (781)
Q Consensus 762 ~l~~~ 766 (781)
.+...
T Consensus 488 ~~~~~ 492 (514)
T 2gw1_A 488 AITFA 492 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-17 Score=180.60 Aligned_cols=722 Identities=11% Similarity=0.077 Sum_probs=407.7
Q ss_pred CCCccchhHHHHHhhcCCchhHHHHhhhhcCC---CcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHH
Q 035828 5 AHLPTSTSLLTAYSNVSYFESSLALFYETCNK---DVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVS 81 (781)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 81 (781)
.--.+|-.-...+...|++++|-++-...|.. +..|.+.+-.+=...|.+.-.+.+|..+.+.| +++..-=--+++
T Consensus 359 Gad~l~~~~F~~l~~~g~y~~AA~~aa~sp~giLRt~~ti~rfk~~~~~pgq~~pll~YF~~ll~~g-~Ln~~eSlEl~r 437 (1630)
T 1xi4_A 359 GAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCR 437 (1630)
T ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 33355555566677777777777776655543 44555555555556677777788888888887 555443333444
Q ss_pred HHhccCcccchhHHHHH------------HHHhc------CCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehH
Q 035828 82 ALTQMNCLKQGRVVHCL------------SIKAG------MIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWN 143 (781)
Q Consensus 82 ~~~~~~~~~~a~~~~~~------------~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 143 (781)
....+|+.+-....+.+ +...+ +-....+....+.++++.|+++++...-+... ...-|.
T Consensus 438 ~vl~q~r~~lle~Wl~e~KL~~SEeLGDlv~~~d~~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~~~~--~~pDy~ 515 (1630)
T 1xi4_A 438 PVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVG--YTPDWI 515 (1630)
T ss_pred HHHHhchHHHHHHHHHhCCccccHHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHhCCHHHHHHHHhccC--CCccHH
Confidence 44444433222222211 11110 01112344577888888888888888876543 133477
Q ss_pred HHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCC---------------
Q 035828 144 TIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDS--------------- 208 (781)
Q Consensus 144 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 208 (781)
.|++.+.+. ++++|.++...+.+.. |.......++..+...+.+..+..++-...+.+-+..
T Consensus 516 ~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~ 592 (1630)
T 1xi4_A 516 FLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHA 592 (1630)
T ss_pred HHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccc
Confidence 888887765 5899999888887763 3455677888888888888888888777766653311
Q ss_pred C------------chhHHHHHHHHHHhcCChhHHHHHhccCC--CC-----CcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 035828 209 P------------YVSVTNSLISMYSQCGDIEAAERAFWGMT--CK-----DVVSWNAIIDGFALNGKFEEAFDLLHEMQ 269 (781)
Q Consensus 209 p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (781)
| +..-+..+...|-+.|-++.|++.+..+. ++ ....-.-++. |...=..+.+++++++|.
T Consensus 593 pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~-~fg~l~~~~s~~~l~~~l 671 (1630)
T 1xi4_A 593 PQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVN-YFGSLSVEDSLECLRAML 671 (1630)
T ss_pred hhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHH-HHhcCCHHHHHHHHHHHH
Confidence 1 12223445566777888888888887654 11 1111222333 334456688888888887
Q ss_pred HcCCCCCCHH-------------HHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 035828 270 LMRSVEPDIA-------------TVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLF 336 (781)
Q Consensus 270 ~~~~~~pd~~-------------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 336 (781)
... ++-+.. +-..++..+-+.+.++...-.+..++. ..-|+.+....|.+.++.|++.+++++.
T Consensus 672 ~~n-~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~--~s~d~~vhfkyi~aa~~~~q~~everi~ 748 (1630)
T 1xi4_A 672 SAN-IRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN--FSQDPDVHFKYIQAACKTGQIKEVERIC 748 (1630)
T ss_pred HHh-HhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhcc--ccCChHHHHHHHHHHHHhCCchhhhHHh
Confidence 643 332221 122333333333333333333333322 3446667777888888888777777665
Q ss_pred HhhCC--------------CCC---------eeeH------------------------------------------HHH
Q 035828 337 NAIAP--------------MND---------LVSW------------------------------------------NSM 351 (781)
Q Consensus 337 ~~~~~--------------~~~---------~~~~------------------------------------------~~l 351 (781)
++-.- -+| ...+ ...
T Consensus 749 res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ 828 (1630)
T 1xi4_A 749 RESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDV 828 (1630)
T ss_pred ccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHH
Confidence 43100 000 0000 000
Q ss_pred HHH-------------HHHHHHH---------------hcccCCchhhhhhhcccCCC----------------------
Q 035828 352 ISG-------------LFKEMLY---------------LCSQFSFSTLLAILPSCNSP---------------------- 381 (781)
Q Consensus 352 l~~-------------l~~~~~~---------------~~~~~~~~~~~~ll~~~~~~---------------------- 381 (781)
|+. |..+... ..-..+..+.+++.+.+...
T Consensus 829 ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgky 908 (1630)
T 1xi4_A 829 IKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKY 908 (1630)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHH
Confidence 000 1111000 01112222333332222211
Q ss_pred -----------------------------cchh------------------------hhHHHHHHHHHhc--CCCchhHH
Q 035828 382 -----------------------------ESLE------------------------FGKSIHCWQLKLG--FSNNTIGV 406 (781)
Q Consensus 382 -----------------------------~~~~------------------------~a~~~~~~~~~~g--~~~~~~~~ 406 (781)
+-++ .-+++.++..... -..++.-.
T Consensus 909 ce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeV 988 (1630)
T 1xi4_A 909 CEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEV 988 (1630)
T ss_pred HHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHh
Confidence 0000 0011112211111 12233444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCC-----cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHh
Q 035828 407 NALMHMYINCGDLVAAFSLLQRISHNSD-----TSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISAC 481 (781)
Q Consensus 407 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 481 (781)
...+.+|...|.+.+|.++++++...|+ ...-+.++.+..+. +..+..++..+.... . ...+-..|
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d------~~eIA~Ia 1059 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D------APDIANIA 1059 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c------HHHHHHHH
Confidence 5667777788888888888887754443 23344455555555 344444444444311 1 22244556
Q ss_pred cCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHh
Q 035828 482 GNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFR 561 (781)
Q Consensus 482 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 561 (781)
...|.+++|..+|+... -.....+.+ +...|++++|.++.+++.. ..+|..+..++...|++++|+..|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 67788888888887752 111111222 2266778888888776643 4578888888888888888888886
Q ss_pred hcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcC------------CChhhHHHHHHH
Q 035828 562 HLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC------------KSNAAWSSMISA 629 (781)
Q Consensus 562 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~li~~ 629 (781)
+. -|...|.-+..+|.+.|++++|.+.+.+..+..-.|...+ .+.-+|++. ++...|..+...
T Consensus 1130 KA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~LafaYAKl~rleele~fI~~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1130 KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNRLAELEEFINGPNNAHIQQVGDR 1204 (1630)
T ss_pred hc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHH
Confidence 54 3455667788888888888888888887766552222221 122222221 334445555666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHH
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 709 (781)
|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. -+..+|..+..++...|++..
T Consensus 1205 le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHH
Confidence 66666666666666663 25666666666666666666666554 123556666666666666666
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc--CChhhHHh
Q 035828 710 AYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL--GRWKDAVE 778 (781)
Q Consensus 710 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~ 778 (781)
|....... ..++..+..++..|.+.|.+++|+.+++..+.++|.+...+..|+.+|.+- ++.-|+++
T Consensus 1269 A~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1269 AQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 66554432 233445667777888889999999999999888888888888888877654 34444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-17 Score=178.39 Aligned_cols=713 Identities=11% Similarity=0.054 Sum_probs=441.9
Q ss_pred chhHHHHHhhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcc
Q 035828 10 STSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCL 89 (781)
Q Consensus 10 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 89 (781)
-+..+..++..|+++++...-++.. ..--|..|+..+.+. +++.|.++...+.+.. |.....+.++..+...+.+
T Consensus 485 ~~Kvi~~l~~~gq~~ki~~Y~~~~~--~~pDy~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~~i 559 (1630)
T 1xi4_A 485 PNKVIQCFAETGQVQKIVLYAKKVG--YTPDWIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYNLI 559 (1630)
T ss_pred cHHHHHHHHHhCCHHHHHHHHhccC--CCccHHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcCcH
Confidence 3456667777777777776655421 122367778777755 5888888888777653 2455577788888888888
Q ss_pred cchhHHHHHHHHhcCCC-----------------------------CcchhhhHHHHhhccCChhhHHHHhccCCC----
Q 035828 90 KQGRVVHCLSIKAGMIA-----------------------------DSSLCNVFVNMYAKCGDLNSSECTFSGMHC---- 136 (781)
Q Consensus 90 ~~a~~~~~~~~~~~~~~-----------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---- 136 (781)
.++..++-+..+.+-+- +..-+..+...|-+.|-+.+|.+.+..+..
T Consensus 560 q~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~ 639 (1630)
T 1xi4_A 560 QQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRA 639 (1630)
T ss_pred HHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHH
Confidence 88888877776655221 223344556677788888888888876531
Q ss_pred ---CCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcch-------------HHHHHHHhhccCChhHHHHHHHHH
Q 035828 137 ---ADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVS-------------LSSAVAASACLGELSYGKVIHALG 200 (781)
Q Consensus 137 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-------------~~~ll~~~~~~~~~~~a~~~~~~~ 200 (781)
.+...-.-|+.-+ ..=+.+.++++++.|...+++-|-.. -..++..+.+.+.++...-++...
T Consensus 640 ~~~~~~~~~~~l~~~f-g~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~si 718 (1630)
T 1xi4_A 640 VVHTHLLNPEWLVNYF-GSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSI 718 (1630)
T ss_pred hhccCcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhh
Confidence 1122222333333 33567888888888887655433222 223333443444444333333333
Q ss_pred HHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC-------------------CC-----CcccHH----------
Q 035828 201 IKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMT-------------------CK-----DVVSWN---------- 246 (781)
Q Consensus 201 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------------------~~-----~~~~~~---------- 246 (781)
+. ...+ +.+....|.+.++.|++.+.+++.++-. .| |...|-
T Consensus 719 v~--~s~d--~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n 794 (1630)
T 1xi4_A 719 VN--FSQD--PDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRN 794 (1630)
T ss_pred cc--ccCC--hHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhc
Confidence 22 2334 7788899999999999999888886643 01 111111
Q ss_pred ---HHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHH-------------HHHHHHhcccchhhhhhHHHHHHHhcCC
Q 035828 247 ---AIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVV-------------TLISLCADSLLLREGRSVHGYAIRRLLG 310 (781)
Q Consensus 247 ---~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~-------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 310 (781)
..|..|++.-++..+-.+.-.+.. +.-+..... -|+..+-+.+++....-+++.-...|.+
T Consensus 795 ~~~~~ie~yv~~vnp~~~p~Vvg~lld---~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g~~ 871 (1630)
T 1xi4_A 795 NLQKYIEIYVQKVNPSRLPVVIGGLLD---VDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCE 871 (1630)
T ss_pred CchhHHHHHHhccCCcccchhhhhhhc---CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 123333333333333233222222 112222222 2333333444444445555555566654
Q ss_pred CChHHHHHHHHHHHhcCCHHHH-------------HHHHHhh-----------------------------------CCC
Q 035828 311 YDLLMMNSLMDFYSKSNSLSKA-------------ELLFNAI-----------------------------------APM 342 (781)
Q Consensus 311 ~~~~~~~~ll~~~~~~~~~~~a-------------~~~~~~~-----------------------------------~~~ 342 (781)
++.++|+|...|...++-.+. -+..++- .+.
T Consensus 872 -~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r 950 (1630)
T 1xi4_A 872 -EPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR 950 (1630)
T ss_pred -CHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh
Confidence 788888888888764432221 1111100 001
Q ss_pred CCeeeHHHHHHH-------HHHHHHHhc--ccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhc--CCCchhHHHHHHH
Q 035828 343 NDLVSWNSMISG-------LFKEMLYLC--SQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLG--FSNNTIGVNALMH 411 (781)
Q Consensus 343 ~~~~~~~~ll~~-------l~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~ 411 (781)
.|...|..++.. +...-.... -..+..-.....+++...|...++.++++.+.-.+ +.-+...-+.++.
T Consensus 951 ~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~ 1030 (1630)
T 1xi4_A 951 KDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLIL 1030 (1630)
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHH
Confidence 133333333311 222111111 12344455666777778999999999999887332 1234456666777
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHH
Q 035828 412 MYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGK 491 (781)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 491 (781)
+..+. +..+..+..+++. + ....-+...+...|.+++|..+|++... + ......++. ..+++++|.
T Consensus 1031 tAIka-D~~Rv~eyI~kLd-~---~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~-~~A~~VLie---~i~nldrAi 1096 (1630)
T 1xi4_A 1031 TAIKA-DRTRVMEYINRLD-N---YDAPDIANIAISNELFEEAFAIFRKFDV-----N-TSAVQVLIE---HIGNLDRAY 1096 (1630)
T ss_pred HHHHh-ChhhHHHHHHHhh-h---ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----H-HHHHHHHHH---HHhhHHHHH
Confidence 77666 5566666666652 2 2245567778888889999888887521 1 111222222 566777777
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHh
Q 035828 492 SLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEI 570 (781)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~ 570 (781)
++..+. -+..+|..+..++.+.|++++|...|.+. .+...|..++.++.+.|++++|+++|... ...++..
T Consensus 1097 E~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~ 1168 (1630)
T 1xi4_A 1097 EFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY 1168 (1630)
T ss_pred HHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc
Confidence 777654 24677788888888888888888888664 55667777888888888888888888766 3334433
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcC----------CChhhHHHHHHHHHhcCChHHHH
Q 035828 571 SIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC----------KSNAAWSSMISAYGYHGKGWEAI 640 (781)
Q Consensus 571 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~li~~~~~~~~~~~A~ 640 (781)
..+.+..+|++.++++....+.+ .++...+..+-+.+... ..+..|..+...|.+.|++++|+
T Consensus 1169 Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1169 VETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred ccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHH
Confidence 33446667777766665443321 11222222222222222 22447999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 035828 641 ELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PI 719 (781)
Q Consensus 641 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 719 (781)
+.+++.. +..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. +.
T Consensus 1242 EaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1242 DGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 9999873 4589999999999999999999877542 445666889999999999999999999876 55
Q ss_pred CCC-cchHHHHHHHHHh--cCCcHHHHHHHHHHhccCC-----CCCchHHHHHHHHHhcCChhhHH
Q 035828 720 QPK-PGVWGAMLSACSH--HGDTKMGKQVAELLFKLEP-----ENVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 720 ~p~-~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
.|. ...|..+...+.+ .++..++.+++..-..+.| +++..|..+..+|.+.|+|+.|.
T Consensus 1310 eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1310 ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 553 3456556555554 5788888888887777666 78889999999999999999998
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-20 Score=203.12 Aligned_cols=254 Identities=7% Similarity=-0.019 Sum_probs=190.0
Q ss_pred CCChHHHHHHHHHHHH-----cCCCCC--------ChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 035828 448 NGHFQEAIKTFKSMTQ-----QQNASP--------DSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALIT 514 (781)
Q Consensus 448 ~~~~~~A~~~~~~m~~-----~~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 514 (781)
.|++++|+..|+++.+ .. ..| +...+..+...+...|+++.|...++.+.+.... ...+..+..
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~ 278 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLD-KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMAL 278 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTT-TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhc-cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHH
Confidence 5666666666666655 21 112 1234445555566667777777777766665433 666677777
Q ss_pred HHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHH
Q 035828 515 MYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGK 589 (781)
Q Consensus 515 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 589 (781)
.|...|++++|...++.+. ..+...|..+...+...|++++|+..|++. ...| +...+..+...+...|+++.|.
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 7888888888888887665 234567888888888899999999999888 5555 4567777888889999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHH
Q 035828 590 QIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGI-RPT----KSSVISLLSA 664 (781)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~ 664 (781)
..++.+.+.... +..+|..+...+...|++++|+..++++.+... .|+ ...+..+...
T Consensus 359 ~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 359 TLFSEAKRKFPE-----------------APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHHHHHSTT-----------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHccc-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 999988775432 223688899999999999999999999987321 111 3388889999
Q ss_pred hcc---cCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc
Q 035828 665 CSH---SGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG 724 (781)
Q Consensus 665 ~~~---~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 724 (781)
+.. .|++++|...++++.+. .|+ ...+..++.+|.+.|++++|.+.++++ ...|+..
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKL---DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 999 99999999999999865 565 578889999999999999999999987 4556543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-20 Score=196.41 Aligned_cols=307 Identities=9% Similarity=0.011 Sum_probs=227.1
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 035828 435 TSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALIT 514 (781)
Q Consensus 435 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 514 (781)
...+..+...+.+.|++++|+.+|+++.+. .+.+...+..+..++...|++++|...++.+.+.+. .+...+..+..
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 444555555666666666666666665553 223445555555556666666666666666555432 24555666666
Q ss_pred HHHhcCChHHHHHHhhhcCCCC---h---hhHHHH------------HHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHH
Q 035828 515 MYGRCRDIKSASTVFESCYNCN---L---CTWNCM------------ISAFSQNKAEVRALELFRHL-EFEP-NEISIVS 574 (781)
Q Consensus 515 ~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ 574 (781)
+|.+.|++++|...|+.+...+ . ..|..+ ...+...|++++|+..|+++ ...| +...+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 6777777777777776654322 2 334333 44478889999999999988 5444 5677888
Q ss_pred HHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 035828 575 ILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT 654 (781)
Q Consensus 575 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 654 (781)
+..++...|+++.|...++.+.+.... +..+|..+...|...|++++|++.|+++.. ..|+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~ 243 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKND-----------------NTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQD 243 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 888899999999999999988775321 233688889999999999999999999987 4554
Q ss_pred HH-HHHHH------------HHHhcccCcHHHHHHHHHHhHHHcCCCCC-----cchHHHHHHHhhhcCChHHHHHHHHh
Q 035828 655 KS-SVISL------------LSACSHSGLVDEGLQYYNNMLEEYDVRPE-----TEHHVCIVDMLGRSGKLQEAYEFIKN 716 (781)
Q Consensus 655 ~~-~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (781)
.. .+..+ ...|...|++++|...++++++. .|+ ..+|..++.++.+.|++++|++.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 43 44444 78889999999999999999875 555 34788999999999999999999998
Q ss_pred C-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 717 L-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 717 ~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
+ ...| +...|..++.+|...|++++|...+++++++.|+++.++..++.+
T Consensus 321 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 7 4445 567899999999999999999999999999999999999999955
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.7e-20 Score=197.96 Aligned_cols=425 Identities=11% Similarity=0.038 Sum_probs=220.2
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHH
Q 035828 243 VSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDF 322 (781)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 322 (781)
..|..+...+.+.|++++|+..|+++.... +.+..++..+..++.+.|+++.|.+.++.+.+.++. +...+..+..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 456667777788888888888888887742 335667777777777888888888888887776533 56777778888
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCc
Q 035828 323 YSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNN 402 (781)
Q Consensus 323 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 402 (781)
+...|++++|...|+.+...++.
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~--------------------------------------------------------- 125 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDF--------------------------------------------------------- 125 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC--------------------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHhcCCCC---------------------------------------------------------
Confidence 88888888888888644331100
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHH
Q 035828 403 TIGVNALMHMYINCGDLVAAFSLLQRISHN-----SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNV 477 (781)
Q Consensus 403 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l 477 (781)
....+..+...+....|...++.+... +........+..+....+.+.+...+..... ..|....+...
T Consensus 126 ---~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 199 (537)
T 3fp2_A 126 ---DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN---YDTAYALLSDA 199 (537)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS---SCSSHHHHHHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc---cccHHHHHHHH
Confidence 001111222333344555555555322 1222234444555555565555544433222 22222222222
Q ss_pred HHH-hcCc--------cchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHH
Q 035828 478 ISA-CGNL--------ELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFS 548 (781)
Q Consensus 478 l~~-~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 548 (781)
+.. +... +++++|..+++.+.+.... +...+..+ ..++..+...+.
T Consensus 200 l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~------------------------~~~~~~~g~~~~ 254 (537)
T 3fp2_A 200 LQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA------------------------ALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH------------------------HHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH------------------------HHHHHHHHHHHH
Confidence 221 1111 2444555555544433211 11110000 012333444455
Q ss_pred hCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHH
Q 035828 549 QNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMI 627 (781)
Q Consensus 549 ~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li 627 (781)
..|++++|+..|++. ...|+...+..+...+...|+++.|...++.+.+.... +..+|..+.
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~l~ 317 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-----------------YPPTYYHRG 317 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-----------------CHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-----------------CHHHHHHHH
Confidence 555555555555555 44455455555555555566666666666555544321 112455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcC
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSG 705 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 705 (781)
..+...|++++|++.+++..+. .| +...+..+...+...|++++|.+.++++.+. .|+ ...+..++..+...|
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhC
Confidence 5555666666666666665552 22 2345555555566666666666666665544 333 345555666666666
Q ss_pred ChHHHHHHHHhC-CCCC---C----cchHHHHHHHHHhc----------CCcHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 035828 706 KLQEAYEFIKNL-PIQP---K----PGVWGAMLSACSHH----------GDTKMGKQVAELLFKLEPENVGYYISLSNMY 767 (781)
Q Consensus 706 ~~~~A~~~~~~~-~~~p---~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 767 (781)
++++|++.++++ ...| . ...+......+... |++++|...++++.+..|+++.++..++.+|
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLK 472 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 666666655554 1111 1 11122333344444 6666666666666666666666666666666
Q ss_pred HhcCChhhHHhhc
Q 035828 768 VALGRWKDAVEIG 780 (781)
Q Consensus 768 ~~~g~~~~A~~l~ 780 (781)
.+.|++++|++.+
T Consensus 473 ~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 473 LQMEKIDEAIELF 485 (537)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 6666666665543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-19 Score=185.94 Aligned_cols=364 Identities=11% Similarity=0.035 Sum_probs=274.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhhcC-CC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHH
Q 035828 401 NNTIGVNALMHMYINCGDLVAAFSLLQRISH-NS-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVI 478 (781)
Q Consensus 401 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 478 (781)
.+...+..+...+.+.|++++|..+|+++.. .| +...|..+...+...|++++|+..|+++.+.+ +.+...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 3566777888888888999999888887643 23 56778888888888899999999998888863 33456777788
Q ss_pred HHhcCccchHHHHHHHHHHHHhcCCCCh---HHHHHH------------HHHHHhcCChHHHHHHhhhcC---CCChhhH
Q 035828 479 SACGNLELAFEGKSLHGLALKSLMGLDT---RVQNAL------------ITMYGRCRDIKSASTVFESCY---NCNLCTW 540 (781)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 540 (781)
..+...|++++|...++.+.+.... +. ..+..+ ...+.+.|++++|...|+.+. +.+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 8888888999999888888765321 22 444444 444888999999999998775 4466788
Q ss_pred HHHHHHHHhCCChhHHHHHHhhc-CCC-CCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCC
Q 035828 541 NCMISAFSQNKAEVRALELFRHL-EFE-PNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCK 618 (781)
Q Consensus 541 ~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 618 (781)
..+..+|...|++++|++.|+++ ... .+..++..+...+...|+++.|...++.+.+....... .+..+....
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~---- 255 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR-CFAHYKQVK---- 255 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH-HHHHHHHHH----
Confidence 89999999999999999999998 533 45778888899999999999999999998865432211 111110000
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cc
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TE 692 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~ 692 (781)
....+..+...+...|++++|++.|+++.+ ..|+ ...+..+...+.+.|++++|...++++.+. .|+ ..
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~ 330 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVN 330 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHH
Confidence 011233447888999999999999999998 4565 347888899999999999999999999865 564 68
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc-hHHHHHHH------------HHhcC-----CcHHHHHHHHH-Hhcc
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG-VWGAMLSA------------CSHHG-----DTKMGKQVAEL-LFKL 752 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~ 752 (781)
.|..++.+|...|++++|.+.++++ ...|+.. .+..+..+ +...| +.+++.+.+++ +.+.
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987 6667644 45555422 22334 67788989987 6777
Q ss_pred CCCCCc----------hHHHHHHHHHhcCChhhHH
Q 035828 753 EPENVG----------YYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 753 ~p~~~~----------~~~~l~~~~~~~g~~~~A~ 777 (781)
.|+... .+..++.+|...|+.+++.
T Consensus 411 ~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 411 HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 776432 5667888899888877654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-19 Score=191.47 Aligned_cols=432 Identities=9% Similarity=-0.007 Sum_probs=219.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 035828 211 VSVTNSLISMYSQCGDIEAAERAFWGMT---CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISL 287 (781)
Q Consensus 211 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~ 287 (781)
...+..+...+.+.|++++|.+.|+++. +.+..+|..+..++.+.|++++|++.|++..+.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence 4556667777788888888888887765 3466778888888888888888888888888742 3346677777888
Q ss_pred HhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCC
Q 035828 288 CADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFS 367 (781)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 367 (781)
+...|+++.|...++ .......+ ....+..+...+....+...++.+.... |+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~l~~~----------------------~~ 155 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDF----DGASIEPMLERNLNKQAMKVLNENLSKD----------------------EG 155 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC--------------------------
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------cc
Confidence 888888888888885 33222221 1222334445555677888887775500 00
Q ss_pred chhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCC-CCcc-cHHHHHHHH
Q 035828 368 FSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHN-SDTS-CWNIVIVAC 445 (781)
Q Consensus 368 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~li~~~ 445 (781)
......|+. ..+..+....+.+.+...+...... +... ....+...+
T Consensus 156 ---------------------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 204 (537)
T 3fp2_A 156 ---------------------------RGSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLY 204 (537)
T ss_dssp ------------------------------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHH
T ss_pred ---------------------------ccccccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 000111221 1222233444444444444333111 1111 222222222
Q ss_pred HhC--------CChHHHHHHHHHHHHcCCCCCChh--------hHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHH
Q 035828 446 TQN--------GHFQEAIKTFKSMTQQQNASPDSV--------TLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQ 509 (781)
Q Consensus 446 ~~~--------~~~~~A~~~~~~m~~~~~~~p~~~--------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 509 (781)
... |++++|+.+|+++.+.. |+.. .+..+...+...|+++.|...+..+.+.. |+...+
T Consensus 205 ~~~~~~~~~a~~~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 279 (537)
T 3fp2_A 205 SATDEGYLVANDLLTKSTDMYHSLLSAN---TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSY 279 (537)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHC---CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHH
Confidence 221 36777788888777643 4421 23333344455555555555555555432 224444
Q ss_pred HHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCc
Q 035828 510 NALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGV 584 (781)
Q Consensus 510 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~ 584 (781)
..+...+...|++++|...++.+. +.+..+|..+...+...|++++|+..|++. ...|+ ..
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------- 345 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY-------------- 345 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH--------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--------------
Confidence 455555555555555555555433 223344445555555555555555555544 22222 22
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035828 585 LRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSA 664 (781)
Q Consensus 585 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 664 (781)
+|..+...+...|++++|++.++++.+.. +.+...+..+...
T Consensus 346 -------------------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 346 -------------------------------------PYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI 387 (537)
T ss_dssp -------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34444455555555555555555555421 1223345555555
Q ss_pred hcccCcHHHHHHHHHHhHHHcCCCCCc----chHHHHHHHhhhc----------CChHHHHHHHHhC-CCCC-CcchHHH
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDVRPET----EHHVCIVDMLGRS----------GKLQEAYEFIKNL-PIQP-KPGVWGA 728 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~ 728 (781)
+...|++++|.+.++++++.....+.. ..+..+...+.+. |++++|++.++++ ...| +...+..
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 555555555555555554431111111 1122333444444 5555555555554 2222 3344555
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCch
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
+...+...|++++|...++++.++.|+++..
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 5555555555555555555555555555444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-17 Score=166.60 Aligned_cols=307 Identities=9% Similarity=0.002 Sum_probs=205.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 035828 441 VIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCR 520 (781)
Q Consensus 441 li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 520 (781)
+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcC
Confidence 3334444444444444444444431 1223333334444444444444444444444332 113344455555555555
Q ss_pred ChHHHHHHhhhcCC--C----ChhhHHH------------HHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhc
Q 035828 521 DIKSASTVFESCYN--C----NLCTWNC------------MISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACT 580 (781)
Q Consensus 521 ~~~~A~~~~~~~~~--~----~~~~~~~------------l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 580 (781)
++++|...++.... | +...+.. +...+...|++++|++.++++ ...| +...+..+...+.
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 55555555554432 1 1122222 256777888888888888888 4444 5566777777888
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHH
Q 035828 581 QLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-SSVI 659 (781)
Q Consensus 581 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~ 659 (781)
..|+++.|...++.+.+... + +..+|..+...+...|++++|.+.+++..+ ..|+. ..+.
T Consensus 166 ~~~~~~~A~~~~~~~~~~~~--~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~ 226 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLKS--D---------------NTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFA 226 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCS--C---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC--C---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHH
Confidence 88888888888888776532 2 223677888888999999999999999887 34443 2222
Q ss_pred ------------HHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-----chHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 035828 660 ------------SLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-----EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP 721 (781)
Q Consensus 660 ------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 721 (781)
.+...+...|++++|...++++.+. .|+. ..+..+...+.+.|++++|++.++++ ...|
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 2356688899999999999999876 4542 34556889999999999999999887 3344
Q ss_pred -CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 722 -KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 722 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
+...+..++..+...|++++|...++++.+++|+++.+...++.++...++
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999998876543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-17 Score=164.82 Aligned_cols=288 Identities=9% Similarity=0.007 Sum_probs=238.6
Q ss_pred hhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHH
Q 035828 471 SVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAF 547 (781)
Q Consensus 471 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 547 (781)
...+..+...+...|++++|...++.+.+... .+...+..+..++...|++++|...++++. +.+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 34556677778899999999999999988643 367888899999999999999999999876 34567899999999
Q ss_pred HhCCChhHHHHHHhhc-CCCC---CHhH-HHHH------------HHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHH
Q 035828 548 SQNKAEVRALELFRHL-EFEP---NEIS-IVSI------------LSACTQLGVLRHGKQIHGHVFHLGFQENSFISSAL 610 (781)
Q Consensus 548 ~~~~~~~~A~~~~~~~-~~~p---~~~~-~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 610 (781)
...|++++|+..|++. ...| +... +..+ ...+...|+++.|...++.+.+....
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------- 152 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW--------- 152 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Confidence 9999999999999999 7788 5433 3333 36778899999999999999876542
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC
Q 035828 611 LDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE 690 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 690 (781)
+...+..+...+...|++++|++.++++.+. .+.+..++..+...+...|++++|.+.+++..+. .|+
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~ 220 (359)
T 3ieg_A 153 --------DAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQD 220 (359)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT
T ss_pred --------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---Ccc
Confidence 2236788888899999999999999999985 2346778999999999999999999999999866 555
Q ss_pred c-chHH------------HHHHHhhhcCChHHHHHHHHhC-CCCCCcc-----hHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 691 T-EHHV------------CIVDMLGRSGKLQEAYEFIKNL-PIQPKPG-----VWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 691 ~-~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
. ..+. .++..+.+.|++++|++.++++ ...|+.. .+..+...+...|++++|...++++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3 3222 3377799999999999999887 3445433 345577888999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 752 LEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 752 ~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..|+++..+..++.+|...|++++|++.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 301 MEPDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999865
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=161.59 Aligned_cols=290 Identities=10% Similarity=-0.016 Sum_probs=194.5
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHH
Q 035828 434 DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALI 513 (781)
Q Consensus 434 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 513 (781)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..++..+.+... .+...+..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 45556666777777777777777777777653 22233333344444555555555555555544321 1333444444
Q ss_pred HHHHhcC-ChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCC-HhHHHHHHHHhcccCchHHHHHH
Q 035828 514 TMYGRCR-DIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPN-EISIVSILSACTQLGVLRHGKQI 591 (781)
Q Consensus 514 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 591 (781)
..+...| ++++|...|+... ...|+ ...+..+...+...|+++.|...
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKAT------------------------------TLEKTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHH------------------------------TTCTTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHH------------------------------HhCCccHHHHHHHHHHHHHccCHHHHHHH
Confidence 4444444 4444444444332 33332 33444444555555555555555
Q ss_pred HHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcH
Q 035828 592 HGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLV 671 (781)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 671 (781)
++.+.+..... ...+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++
T Consensus 148 ~~~a~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 148 YFTAAQLMKGC-----------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHHHHTTTC-----------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcccc-----------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccH
Confidence 55555443221 1245567777888999999999999998742 33567888889999999999
Q ss_pred HHHHHHHHHhHHHcCC-------CCCcchHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCCcHHH
Q 035828 672 DEGLQYYNNMLEEYDV-------RPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPGVWGAMLSACSHHGDTKMG 742 (781)
Q Consensus 672 ~~a~~~~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 742 (781)
++|...++++.+...- +.....+..++..|.+.|++++|++.++++ .. +.+...+..+...+...|++++|
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 9999999998775211 223578999999999999999999999887 33 34567889999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHH-hcCChh
Q 035828 743 KQVAELLFKLEPENVGYYISLSNMYV-ALGRWK 774 (781)
Q Consensus 743 ~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~ 774 (781)
...++++.++.|+++.++..++.++. ..|+.+
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999999984 556543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=167.11 Aligned_cols=292 Identities=16% Similarity=0.092 Sum_probs=190.8
Q ss_pred HHhcCCHHHHHH-HHHhhcCC----C--CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCcc
Q 035828 413 YINCGDLVAAFS-LLQRISHN----S--DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLE 485 (781)
Q Consensus 413 ~~~~~~~~~a~~-~~~~~~~~----~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 485 (781)
+...|++++|.. .+++.... | +...+..+...+.+.|++++|+..|+++.+.. |+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~--------------- 96 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---PK--------------- 96 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TT---------------
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC---------------
Confidence 344466666666 55543211 1 24456666666677777777777777766642 22
Q ss_pred chHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhh
Q 035828 486 LAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRH 562 (781)
Q Consensus 486 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 562 (781)
+...+..+..+|.+.|++++|...|+++. +.+..+|..+...+...|++++|+..+++
T Consensus 97 -------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 97 -------------------HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRD 157 (368)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334444555555555555555555433 22344556666666666666666666666
Q ss_pred c-CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHH
Q 035828 563 L-EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIE 641 (781)
Q Consensus 563 ~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 641 (781)
+ ...|+........ +.... ...+.. .+..+.. +...|++++|+.
T Consensus 158 ~~~~~~~~~~~~~~~------~~~~~-----------~~~~~~-----------------~~~~~~~-~~~~~~~~~A~~ 202 (368)
T 1fch_A 158 WLRYTPAYAHLVTPA------EEGAG-----------GAGLGP-----------------SKRILGS-LLSDSLFLEVKE 202 (368)
T ss_dssp HHHTSTTTGGGCC-------------------------------------------------CTTHH-HHHHHHHHHHHH
T ss_pred HHHhCcCcHHHHHHH------HHHhh-----------hhcccH-----------------HHHHHHH-HhhcccHHHHHH
Confidence 6 3444322111000 00000 000000 1111222 237899999999
Q ss_pred HHHHHHhCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 642 LFHEMCNSGIRPT---KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 642 ~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
.++++.+. .|+ ..++..+...+...|++++|...++++++. .|+ ...+..++..+.+.|++++|++.++++
T Consensus 203 ~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 203 LFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999884 444 778999999999999999999999999865 565 578999999999999999999999987
Q ss_pred -CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC-----------CchHHHHHHHHHhcCChhhHHhhcC
Q 035828 718 -PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN-----------VGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 718 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
...| +...+..+...+.+.|++++|...++++.++.|++ +.++..++.+|...|++++|..+++
T Consensus 278 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 278 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 3444 56688999999999999999999999999999887 7899999999999999999998753
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-16 Score=158.80 Aligned_cols=257 Identities=11% Similarity=0.105 Sum_probs=213.3
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHH
Q 035828 503 GLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILS 577 (781)
Q Consensus 503 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 577 (781)
+.+...+..+...+...|++++|.++|+.+. +.+...+..++..+...|++++|+..++++ ...| +...+..+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 3455566677778888899999999888775 334456777788888999999999999998 5555 4566777778
Q ss_pred HhcccC-chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 035828 578 ACTQLG-VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS 656 (781)
Q Consensus 578 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 656 (781)
.+...| +++.|...++...+.... +...|..+...+...|++++|++.++++.+.. +.+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 160 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-----------------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHL 160 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-----------------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHH
Confidence 888889 999999999998875432 22368888899999999999999999998842 22456
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CC----------CCCcc
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI----------QPKPG 724 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~ 724 (781)
.+..+...+...|++++|.+.++++++ ..|+ ...+..++..+.+.|++++|++.++++ .. +....
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH
Confidence 777788999999999999999999974 4665 588999999999999999999998876 11 33456
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+..++..+...|++++|...++++.+..|+++.++..++.+|.+.|++++|++.+
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999865
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-16 Score=153.15 Aligned_cols=286 Identities=12% Similarity=0.110 Sum_probs=130.8
Q ss_pred hhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHH
Q 035828 18 SNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHC 97 (781)
Q Consensus 18 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 97 (781)
.+.|++++|.+++++.+.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++.+.|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996664 899999999999999999999975 3688899999999999999999999888
Q ss_pred HHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchH
Q 035828 98 LSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSL 177 (781)
Q Consensus 98 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 177 (781)
...+. .+++.+.+.|+.+|.+.|++++++++++ .|+..+|+.+...|...|.+++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 4558889999999999999999999886 477789999999999999999999999987 479
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCC
Q 035828 178 SSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGK 257 (781)
Q Consensus 178 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 257 (781)
..+..++.+.|+++.|.+.+..+ .+ +.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~--~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NS--TRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TC--HHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CC--chhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 99999999999999999998877 23 8899999999999999999988877665 344445578899999999
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCC------ChHHHHHHHHHHHhcCCHHH
Q 035828 258 FEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGY------DLLMMNSLMDFYSKSNSLSK 331 (781)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~ 331 (781)
+++|..+++.......-.-...|...++.+--+.+...+..+.|.. +-+++| +...|..+.-.|...++++.
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999999876331222233333333333344555555554431 122232 45678888888888899988
Q ss_pred HHHHH
Q 035828 332 AELLF 336 (781)
Q Consensus 332 a~~~~ 336 (781)
|....
T Consensus 301 A~~tm 305 (449)
T 1b89_A 301 AIITM 305 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-14 Score=155.16 Aligned_cols=206 Identities=9% Similarity=0.018 Sum_probs=157.8
Q ss_pred hHHHHHHhhc-CCCC-CHhHHHHHHHHhcc-------cCchH-------HHHHHHHHHHHhCCCCCchHHHHHHHhhhcC
Q 035828 554 VRALELFRHL-EFEP-NEISIVSILSACTQ-------LGVLR-------HGKQIHGHVFHLGFQENSFISSALLDMYSNC 617 (781)
Q Consensus 554 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 617 (781)
.+++.+|++. ...| +...|..+...+.. .|+++ .|..+++...+. +.|+
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~-------------- 319 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKK-------------- 319 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSS--------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcc--------------
Confidence 3677788887 5444 45556656555553 68876 788888887652 2333
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchH
Q 035828 618 KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK--SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHH 694 (781)
Q Consensus 618 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 694 (781)
+...|..++..+.+.|++++|.++|+++.+ +.|+. ..|..++..+.+.|+.++|.++|++.++. .|. ...|
T Consensus 320 -~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~ 393 (530)
T 2ooe_A 320 -NMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVY 393 (530)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHH
T ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHH
Confidence 223688888889999999999999999998 56653 47888888888999999999999999743 554 3444
Q ss_pred HHHHHH-hhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc----hHHHHHHHH
Q 035828 695 VCIVDM-LGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG----YYISLSNMY 767 (781)
Q Consensus 695 ~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~ 767 (781)
...+.. +...|++++|..++++. ...| +...|..++..+.+.|+.+.|..++++++...|.+|. .+...+...
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 433333 34689999999999976 3344 5678999999999999999999999999999877766 677778888
Q ss_pred HhcCChhhHHhhc
Q 035828 768 VALGRWKDAVEIG 780 (781)
Q Consensus 768 ~~~g~~~~A~~l~ 780 (781)
...|+.+++.++.
T Consensus 474 ~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 474 SNIGDLASILKVE 486 (530)
T ss_dssp HHSSCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 8899999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=163.26 Aligned_cols=265 Identities=15% Similarity=0.080 Sum_probs=185.4
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHH
Q 035828 434 DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALI 513 (781)
Q Consensus 434 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 513 (781)
+...|..+...+.+.|++++|+..|+++.+.. |+ +...+..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~----------------------------------~~~~~~~lg 106 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PG----------------------------------DAEAWQFLG 106 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT----------------------------------CHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cC----------------------------------CHHHHHHHH
Confidence 34457777777777777777777777777643 32 333445555
Q ss_pred HHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHH
Q 035828 514 TMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGK 589 (781)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~ 589 (781)
.+|.+.|++++|...|+++. +.+..+|..+...|...|++++|+..|+++ ...|+.......+.
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~------------ 174 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK------------ 174 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc------------
Confidence 55555666666666555443 223445666666666666666666666665 34443221100000
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHhc
Q 035828 590 QIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP---TKSSVISLLSACS 666 (781)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~ 666 (781)
.....+..+...+...|++++|++.++++.+. .| +..++..+...+.
T Consensus 175 ----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 175 ----------------------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHHHHH
T ss_pred ----------------------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHHHHHH
Confidence 00113455667788899999999999999884 44 5778999999999
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGK 743 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 743 (781)
..|++++|.+.++++++. .|+ ..+|..++.+|.+.|++++|++.++++ ...| +...+..+...+...|++++|.
T Consensus 225 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999866 555 688999999999999999999999887 4445 4668899999999999999999
Q ss_pred HHHHHHhccCCC------------CCchHHHHHHHHHhcCChhhHHhhc
Q 035828 744 QVAELLFKLEPE------------NVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 744 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..++++.++.|+ +...+..|+.++...|+.+.|.++.
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999877 4678999999999999999998764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-14 Score=153.68 Aligned_cols=332 Identities=11% Similarity=0.012 Sum_probs=220.3
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHhhcCCCCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCChhhHHH
Q 035828 405 GVNALMHMYIN----CGDLVAAFSLLQRISHNSDTSCWNIVIVACTQ----NGHFQEAIKTFKSMTQQQNASPDSVTLVN 476 (781)
Q Consensus 405 ~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ 476 (781)
.+..|-..|.. .++.++|...|++.....+...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~ 152 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQS 152 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHH
Confidence 34444444555 56666666666665444455555556666665 566777777777666554 2333444
Q ss_pred HHHHhcC----ccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCChHHHHHHhhhcC-CCChhhHHHHHHHH
Q 035828 477 VISACGN----LELAFEGKSLHGLALKSLMGLDTRVQNALITMYGR----CRDIKSASTVFESCY-NCNLCTWNCMISAF 547 (781)
Q Consensus 477 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~ 547 (781)
+-..+.. .++.++|...++...+.| +...+..|...|.. .++.++|.+.|++.. ..+...+..+...|
T Consensus 153 Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 229 (490)
T 2xm6_A 153 MGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMY 229 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444433 566777777777666654 45566666666666 677777777777654 33445666666666
Q ss_pred Hh----CCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcc----cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCC
Q 035828 548 SQ----NKAEVRALELFRHL-EFEPNEISIVSILSACTQ----LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCK 618 (781)
Q Consensus 548 ~~----~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 618 (781)
.. .+++++|+.+|++. .. .+...+..+-..+.. .++.+.|...++...+.|.
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~------------------ 290 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN------------------ 290 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC------------------
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC------------------
Confidence 65 67778888888777 32 223333334444443 6788888888887766542
Q ss_pred ChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhHHHcCCCCC
Q 035828 619 SNAAWSSMISAYGYH-----GKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG---LVDEGLQYYNNMLEEYDVRPE 690 (781)
Q Consensus 619 ~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p~ 690 (781)
..++..+...|... +++++|+.+|++..+.| +...+..+...+...| +.++|.+++++..+. .+
T Consensus 291 -~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~ 362 (490)
T 2xm6_A 291 -SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GE 362 (490)
T ss_dssp -HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TC
T ss_pred -HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CC
Confidence 11455556666665 88999999999988764 3456666666666545 788999999988654 34
Q ss_pred cchHHHHHHHhhh----cCChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccCCC---CCch
Q 035828 691 TEHHVCIVDMLGR----SGKLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLEPE---NVGY 759 (781)
Q Consensus 691 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~ 759 (781)
+..+..|...|.. .+++++|++++++.....++..+..+...+.. .+|+++|..+++++.+.+|+ ++.+
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a 442 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENR 442 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHH
Confidence 6778888888888 78999999998877333456677888888877 78999999999999998844 7777
Q ss_pred HHHHHHHHHhc
Q 035828 760 YISLSNMYVAL 770 (781)
Q Consensus 760 ~~~l~~~~~~~ 770 (781)
...|+.++...
T Consensus 443 ~~~l~~~~~~~ 453 (490)
T 2xm6_A 443 NITEKKLTAKQ 453 (490)
T ss_dssp HHHHTTSCHHH
T ss_pred HHHHHhcCHhH
Confidence 77777776543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-15 Score=147.45 Aligned_cols=268 Identities=7% Similarity=-0.047 Sum_probs=202.1
Q ss_pred HHhcCccchHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHH
Q 035828 479 SACGNLELAFEGKSLHGLALKSLMGLD--TRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRA 556 (781)
Q Consensus 479 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 556 (781)
+.....|++..|....+.... ..|+ ......+.++|...|+++.|+..++....++..++..+...+...++.++|
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344556888888877765533 2333 234456778999999999999988876566667888888899999999999
Q ss_pred HHHHhhc--C-CCCCHhH-HHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh
Q 035828 557 LELFRHL--E-FEPNEIS-IVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGY 632 (781)
Q Consensus 557 ~~~~~~~--~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 632 (781)
++.++++ . ..|+... +..+-..+...|++++|.+.++. |+ +..++..++..+.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~---------------~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GD---------------SLECMAMTVQILLK 142 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CC---------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CC---------------CHHHHHHHHHHHHH
Confidence 9999987 3 4686544 44455678899999999999876 22 23367788888999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHH
Q 035828 633 HGKGWEAIELFHEMCNSGIRPTKSSVI---SLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 709 (781)
.|++++|.+.|+++.+. .|+..... .++..+...|++++|..+|+++.+. .+.++..+..++.++.+.|++++
T Consensus 143 ~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~e 218 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEA 218 (291)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999884 46643221 2233344568999999999999876 23346788899999999999999
Q ss_pred HHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHH-HHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 710 AYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKM-GKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 710 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
|.+.++++ ...| ++.++..++..+...|+.++ +.++++++.+++|+++.+. ....+.+.+++|..
T Consensus 219 A~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 219 AEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 99999886 4445 55678888888888998876 5789999999999998654 45667777777754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.5e-14 Score=148.36 Aligned_cols=344 Identities=12% Similarity=0.080 Sum_probs=274.6
Q ss_pred CchhHHHHHHHHHHh----cCCHHHHHHHHHhhcCCCCcccHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCChh
Q 035828 401 NNTIGVNALMHMYIN----CGDLVAAFSLLQRISHNSDTSCWNIVIVACTQ----NGHFQEAIKTFKSMTQQQNASPDSV 472 (781)
Q Consensus 401 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~~ 472 (781)
.+...+..+-..|.. .+++++|...|++.....+...+..+...|.. .+++++|...|++..+.+ +..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~ 112 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQ 112 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHH
Confidence 356667777777777 89999999999987666677888888889988 899999999999998865 444
Q ss_pred hHHHHHHHhcC----ccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCChHHHHHHhhhcC-CCChhhHHHH
Q 035828 473 TLVNVISACGN----LELAFEGKSLHGLALKSLMGLDTRVQNALITMYGR----CRDIKSASTVFESCY-NCNLCTWNCM 543 (781)
Q Consensus 473 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l 543 (781)
.+..+-..+.. .+++++|...++...+.| +...+..|...|.. .++.++|.+.|++.. ..+...+..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 55555556655 789999999999998876 56677778888887 789999999998766 4466788888
Q ss_pred HHHHHh----CCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcc----cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhh
Q 035828 544 ISAFSQ----NKAEVRALELFRHL-EFEPNEISIVSILSACTQ----LGVLRHGKQIHGHVFHLGFQENSFISSALLDMY 614 (781)
Q Consensus 544 ~~~~~~----~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 614 (781)
...|.. .++.++|+..|++. .. .+...+..+-..+.. .++.+.|...++...+.|..
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~------------- 255 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATS-GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS------------- 255 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH-------------
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH-------------
Confidence 888888 89999999999998 32 234455555555553 78999999999998876532
Q ss_pred hcCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc-----CcHHHHHHHHHHhHHHc
Q 035828 615 SNCKSNAAWSSMISAYGY----HGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHS-----GLVDEGLQYYNNMLEEY 685 (781)
Q Consensus 615 ~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~ 685 (781)
.++..+...|.. .++.++|+++|++..+.| +...+..+...+... ++.++|..++++..+.
T Consensus 256 ------~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~- 325 (490)
T 2xm6_A 256 ------IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ- 325 (490)
T ss_dssp ------HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-
T ss_pred ------HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-
Confidence 134555556666 899999999999998764 445666677777665 8999999999998754
Q ss_pred CCCCCcchHHHHHHHhhhcC---ChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccCCCCCc
Q 035828 686 DVRPETEHHVCIVDMLGRSG---KLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 686 ~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
+ +...+..+...|.+.| ++++|++++++.....++..+..+...+.. .+++++|..+++++.+.+ ++.
T Consensus 326 ~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~ 400 (490)
T 2xm6_A 326 G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSA 400 (490)
T ss_dssp T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHH
Confidence 2 3467788888888766 889999999987433567788889888888 899999999999998864 688
Q ss_pred hHHHHHHHHHh----cCChhhHHhhc
Q 035828 759 YYISLSNMYVA----LGRWKDAVEIG 780 (781)
Q Consensus 759 ~~~~l~~~~~~----~g~~~~A~~l~ 780 (781)
++..|+.+|.. .++.++|.+.+
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~ 426 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWF 426 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99999999999 89999998765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-15 Score=147.39 Aligned_cols=351 Identities=16% Similarity=0.122 Sum_probs=149.0
Q ss_pred hcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHH
Q 035828 223 QCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHG 302 (781)
Q Consensus 223 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 302 (781)
+.|++++|.++++++..|+ +|+.+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999996654 899999999999999999999964 2567789999999999999999999777
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCc
Q 035828 303 YAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPE 382 (781)
Q Consensus 303 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~ 382 (781)
...+. .+++.+.+.|+.+|.+.|+++++.++++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------------------------------------------- 118 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN--------------------------------------------- 118 (449)
T ss_dssp -------------------------CHHHHTTTTT---------------------------------------------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------------------------------------------
Confidence 66664 4457788889999999999988776553
Q ss_pred chhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 035828 383 SLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMT 462 (781)
Q Consensus 383 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 462 (781)
.|+..+|..+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.++++
T Consensus 119 -----------------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------~n~~~LA~~L~~Lg~yq~AVea~~KA- 174 (449)
T 1b89_A 119 -----------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKA- 174 (449)
T ss_dssp -----------------CC----------------CTTTHHHHHHHT------TCHHHHHHHHHTTTCHHHHHHHHHHH-
T ss_pred -----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------hhHHHHHHHHHHhccHHHHHHHHHHc-
Confidence 244557778888888889999999999877 47999999999999999999999877
Q ss_pred HcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcCC---CChhh
Q 035828 463 QQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCYN---CNLCT 539 (781)
Q Consensus 463 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 539 (781)
.+..+|..++.+|...|+++.|...... +...+.-...++..|.+.|.+++|..+++.... .....
T Consensus 175 ------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ 243 (449)
T 1b89_A 175 ------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 243 (449)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHH
T ss_pred ------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHH
Confidence 2567888888888888888888444332 222333344577777777777777777776552 23345
Q ss_pred HHHHHHHHHhCC--ChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcC
Q 035828 540 WNCMISAFSQNK--AEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNC 617 (781)
Q Consensus 540 ~~~l~~~~~~~~--~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 617 (781)
|+-+.-+|++-+ +..+.+++|..- -+ ..-++++|.
T Consensus 244 ftel~il~~ky~p~k~~ehl~~~~~~---in---i~k~~~~~~------------------------------------- 280 (449)
T 1b89_A 244 FTELAILYSKFKPQKMREHLELFWSR---VN---IPKVLRAAE------------------------------------- 280 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTT---SC---HHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH---hc---CcHHHHHHH-------------------------------------
Confidence 666655555542 233333333211 11 111233332
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHH
Q 035828 618 KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCI 697 (781)
Q Consensus 618 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 697 (781)
+...|..++-.|...++++.|..+ |.+ ..|+..--..+.....+..+.+--.+...=-++. .|. ..+.|
T Consensus 281 -~~~~w~e~~~ly~~~~e~d~A~~t---m~~--h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~---~p~--~l~~l 349 (449)
T 1b89_A 281 -QAHLWAELVFLYDKYEEYDNAIIT---MMN--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPL--LLNDL 349 (449)
T ss_dssp -TTTCHHHHHHHHHHTTCHHHHHHH---HHH--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CGG--GHHHH
T ss_pred -HHHHHHHHHHHHHhhchHHHHHHH---HHh--CChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc---CHH--HHHHH
Confidence 334788888889999999988874 444 3445444444444445555544332222222222 343 35666
Q ss_pred HHHhhhcCChHHHHHHHHhCC
Q 035828 698 VDMLGRSGKLQEAYEFIKNLP 718 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~ 718 (781)
+.++...=+..++.+++++.+
T Consensus 350 l~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 350 LMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHHHGGGCCHHHHHHHHHHTT
T ss_pred HHHHHhccCcHHHHHHHHHcC
Confidence 666666667777777776664
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=147.87 Aligned_cols=235 Identities=10% Similarity=0.020 Sum_probs=131.4
Q ss_pred HHhcCChHHHHHHhhhcCCCCh----hhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHH
Q 035828 516 YGRCRDIKSASTVFESCYNCNL----CTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQI 591 (781)
Q Consensus 516 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 591 (781)
....|++..|+..++.....++ ...-.+..+|...|+++.|+..++.. ..|+..++..+...+...++.+.|.+.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 3445666666666655543322 13334455666666666666544432 333445555555566666666666666
Q ss_pred HHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcH
Q 035828 592 HGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLV 671 (781)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 671 (781)
++.+...+..|+... .+..+...+...|++++|++.+++ ..+...+..++..+.+.|++
T Consensus 88 l~~ll~~~~~P~~~~---------------~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 88 LDREMSRSVDVTNTT---------------FLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHHHSCCCCSCHH---------------HHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCH
Confidence 666665554444221 344445555666666666666655 23445566666666666666
Q ss_pred HHHHHHHHHhHHHcCCCCCcch---HHHHHHHhhhcCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCcHHHHHHH
Q 035828 672 DEGLQYYNNMLEEYDVRPETEH---HVCIVDMLGRSGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHGDTKMGKQVA 746 (781)
Q Consensus 672 ~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 746 (781)
++|.+.++++.+. .|+... ...++..+...|++++|..+++++ ..+++...++.+..++.+.|++++|+..+
T Consensus 147 ~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 147 DLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666544 344211 112223333446666666666655 22334445666666666666666666666
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 747 ELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 747 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
+++++++|+++.++.+++.++...|+.++
T Consensus 224 ~~al~~~p~~~~~l~~l~~~~~~~g~~~e 252 (291)
T 3mkr_A 224 QEALDKDSGHPETLINLVVLSQHLGKPPE 252 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCHH
Confidence 66666666666666666666666666654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.5e-14 Score=149.99 Aligned_cols=211 Identities=10% Similarity=0.095 Sum_probs=159.5
Q ss_pred HHHHHhhhcC---CCChhhHHHHHHHHHh-------CCChh-------HHHHHHhhc-C-CCCC-HhHHHHHHHHhcccC
Q 035828 524 SASTVFESCY---NCNLCTWNCMISAFSQ-------NKAEV-------RALELFRHL-E-FEPN-EISIVSILSACTQLG 583 (781)
Q Consensus 524 ~A~~~~~~~~---~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~-~-~~p~-~~~~~~ll~~~~~~~ 583 (781)
.+..+|++.. ..+...|......+.+ .|+++ +|..+|++. . ..|+ ...+..+...+.+.|
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 5556666554 3355677777777765 68876 888999888 5 6775 566777777888889
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 035828 584 VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLL 662 (781)
Q Consensus 584 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 662 (781)
+++.|..+++.+++. .|+.. ...|..++..+.+.|+.++|.++|++..+. .|+ ...|....
T Consensus 336 ~~~~A~~~~~~al~~--~p~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a 397 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAI--EDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA 397 (530)
T ss_dssp CHHHHHHHHHHHHHS--SSSCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHH
T ss_pred CHHHHHHHHHHHhCc--cccCc--------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHH
Confidence 999999999998874 33211 125777888888899999999999999874 333 23333222
Q ss_pred HH-hcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC--cchHHHHHHHHH
Q 035828 663 SA-CSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-P---IQPK--PGVWGAMLSACS 734 (781)
Q Consensus 663 ~~-~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~~~~~ 734 (781)
.. +...|+.++|..+|++.++. .|+ +..|..++..+.+.|+.++|..+++++ . ..|+ ...|...+....
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 22 33589999999999999876 465 588899999999999999999999987 2 2332 237888888888
Q ss_pred hcCCcHHHHHHHHHHhccCCC
Q 035828 735 HHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~~~p~ 755 (781)
..|+.+.+..+.+++.+..|+
T Consensus 475 ~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HSSCHHHHHHHHHHHHHHTHH
T ss_pred HcCCHHHHHHHHHHHHHHCch
Confidence 899999999999999999885
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=151.78 Aligned_cols=263 Identities=12% Similarity=0.023 Sum_probs=177.3
Q ss_pred HHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCch
Q 035828 511 ALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVL 585 (781)
Q Consensus 511 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~ 585 (781)
.+...+...|++++|..+|+++. +.+...|..+..++...|++++|+..++++ ...| +..++..+...+...|++
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCH
Confidence 33444445555555555554443 223344555555555555555555555555 3333 344455555555566666
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHH-HH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035828 586 RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSM-IS-AYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLS 663 (781)
Q Consensus 586 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-i~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 663 (781)
+.|...++.+.+........ +..+.... ++......+ .. .+...|++++|++.++++.+.. +.+...+..+..
T Consensus 106 ~~A~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 106 NAALASLRAWLLSQPQYEQL-GSVNLQAD---VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp HHHHHHHHHHHHTSTTTTTC------------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHH-HHHHhHHH---HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 66666666555433221111 00000000 000001111 11 2667899999999999998842 336778999999
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTK 740 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 740 (781)
.+...|++++|.+.++++.+. .|+ ...+..++..+...|++++|++.++++ ...| +...+..+...+...|+++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 999999999999999999866 555 578999999999999999999999887 3344 5668889999999999999
Q ss_pred HHHHHHHHHhccCCC------------CCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 741 MGKQVAELLFKLEPE------------NVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
+|...++++.+..|+ ++..+..++.+|.+.|++++|.++++
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999 78899999999999999999998763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=155.55 Aligned_cols=226 Identities=9% Similarity=0.056 Sum_probs=184.0
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHh
Q 035828 536 NLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDM 613 (781)
Q Consensus 536 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 613 (781)
+...|..+...+.+.|++++|+..|+++ ...| +..++..+...+...|+++.|...++.+.+... +
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~---------- 131 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP--N---------- 131 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T----------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--C----------
Confidence 3456888888999999999999999998 5445 567888888889999999999999999887643 2
Q ss_pred hhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHhcccCcHHHHHHHHHHhH
Q 035828 614 YSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS-----------SVISLLSACSHSGLVDEGLQYYNNML 682 (781)
Q Consensus 614 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~ 682 (781)
+..+|..+...|...|++++|++.++++.+ ..|+.. .+..+...+...|++++|.+++++++
T Consensus 132 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 132 -----NLKALMALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 233688889999999999999999999987 344422 23345778889999999999999998
Q ss_pred HHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchH
Q 035828 683 EEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 683 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
+.....++...+..++..|.+.|++++|++.++++ ...| +...|..++..+...|++++|...++++++..|+++.++
T Consensus 205 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 284 (365)
T 4eqf_A 205 HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284 (365)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH
Confidence 77222224678999999999999999999999987 3334 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHhhc
Q 035828 761 ISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~l~ 780 (781)
..++.+|...|++++|++.+
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999875
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-17 Score=174.53 Aligned_cols=146 Identities=5% Similarity=-0.039 Sum_probs=127.7
Q ss_pred ccchhHHHHHhhcCCchhHHHHhhhh-------cCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHH
Q 035828 8 PTSTSLLTAYSNVSYFESSLALFYET-------CNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIV 80 (781)
Q Consensus 8 ~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 80 (781)
.|||+||.+|++.|++++|.++|++| ..||+.|||+||++||+.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 58999999999999999999999764 47999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcc-cchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCC-----CCeeehHHHHHHHhhCC
Q 035828 81 SALTQMNCL-KQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHC-----ADTVSWNTIMSGCLHNN 153 (781)
Q Consensus 81 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g 153 (781)
.++|+.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.+++..+.. |...+.+.|...|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 78999999999999999999999999988887777777777665542 22445566666777655
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.9e-15 Score=150.90 Aligned_cols=246 Identities=12% Similarity=0.094 Sum_probs=190.1
Q ss_pred HHhcCChHHHHH-HhhhcC---CC----ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCch
Q 035828 516 YGRCRDIKSAST-VFESCY---NC----NLCTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVL 585 (781)
Q Consensus 516 ~~~~g~~~~A~~-~~~~~~---~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~ 585 (781)
+...|++++|.+ .+++.. +. +...+..+...+...|++++|+..|+++ ...| +...+..+..++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 344578888887 777543 21 2356788888999999999999999998 5555 566778888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHH----
Q 035828 586 RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS-SVIS---- 660 (781)
Q Consensus 586 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~---- 660 (781)
+.|...++.+.+.... +..+|..+...+...|++++|++.++++.+. .|+.. .+..
T Consensus 115 ~~A~~~~~~al~~~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 115 LLAISALRRCLELKPD-----------------NQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEG 175 (368)
T ss_dssp HHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC-----
T ss_pred HHHHHHHHHHHhcCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 9999999998876532 2336888888899999999999999999984 34332 2211
Q ss_pred -----------HHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHH
Q 035828 661 -----------LLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWG 727 (781)
Q Consensus 661 -----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 727 (781)
.+..+...|++++|...++++.+.....++..++..++..|.+.|++++|++.++++ ...| +...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 255 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 255 (368)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH
Confidence 233344889999999999999876222223678899999999999999999999887 3344 466889
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 728 AMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.++..+...|++++|...++++.++.|+++..+..++.+|.+.|++++|++.+
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999865
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-16 Score=170.51 Aligned_cols=124 Identities=12% Similarity=0.079 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCC-------CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 035828 211 VSVTNSLISMYSQCGDIEAAERAFWGMT-------CKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVT 283 (781)
Q Consensus 211 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ 283 (781)
..+||+||++||+.|++++|.++|++|. .||+.|||+||.+||+.|++++|.++|++|.+.| +.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHHH
Confidence 6799999999999999999999997753 6899999999999999999999999999999999 9999999999
Q ss_pred HHHHHhcccch-hhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 035828 284 LISLCADSLLL-REGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELL 335 (781)
Q Consensus 284 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 335 (781)
+|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999985 78999999999999999999999999877765444444433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=145.79 Aligned_cols=279 Identities=9% Similarity=-0.050 Sum_probs=189.6
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHH
Q 035828 434 DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALI 513 (781)
Q Consensus 434 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 513 (781)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 44566777888888999999999999988753 2244455555555666666666666666555442 12344444444
Q ss_pred HHHHhcCChHHHHHHhhhcCCCC---hhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHH--HhcccCchHHH
Q 035828 514 TMYGRCRDIKSASTVFESCYNCN---LCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILS--ACTQLGVLRHG 588 (781)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~--~~~~~~~~~~a 588 (781)
..|...|++++|...++.+...+ ...+..+.. ..|+......+.. .+...|+++.|
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ-------------------ADVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------------------------------------CCTTSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH-------------------HHHHHHHHHHHHHhHHHHHcccHHHH
Confidence 45555555555554444332111 011111100 0111111111113 37788999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc
Q 035828 589 KQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHS 668 (781)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 668 (781)
...++.+.+.... +...+..+...+...|++++|++.++++.+.. +.+..++..+...+...
T Consensus 158 ~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 219 (327)
T 3cv0_A 158 RTLLHAALEMNPN-----------------DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANG 219 (327)
T ss_dssp HHHHHHHHHHSTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCC-----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc
Confidence 9999998876543 22367888888999999999999999998742 33567899999999999
Q ss_pred CcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-------------CcchHHHHHHHH
Q 035828 669 GLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-------------KPGVWGAMLSAC 733 (781)
Q Consensus 669 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~ 733 (781)
|++++|.+.++++.+. .|+ ...+..++..|.+.|++++|.+.++++ ...| +...+..+...+
T Consensus 220 ~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (327)
T 3cv0_A 220 NRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL 296 (327)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH
Confidence 9999999999999865 555 578999999999999999999999876 2333 356788899999
Q ss_pred HhcCCcHHHHHHHHHHhccCCC
Q 035828 734 SHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
...|+.++|...++++++..|+
T Consensus 297 ~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 297 NVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHTTCHHHHHHHTTCCSHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhcch
Confidence 9999999999999887776554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=134.20 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=122.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhccc-----------CcHHHHHHHHHHhHHHcCCCC
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHS-----------GLVDEGLQYYNNMLEEYDVRP 689 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p 689 (781)
+|..+...+...|++++|+..+++..+ ..| +...+..+..++... |++++|...+++.++. .|
T Consensus 41 a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P 115 (217)
T 2pl2_A 41 ALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NP 115 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---Cc
Confidence 566667777788888888888888877 455 445777777778778 9999999999999865 77
Q ss_pred C-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 035828 690 E-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMY 767 (781)
Q Consensus 690 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 767 (781)
+ ...+..+..+|...|++++|++.++++ ....++..+..+...+...|++++|...++++++++|+++..+..++.+|
T Consensus 116 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 116 RYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195 (217)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 6 578899999999999999999999887 22266778899999999999999999999999999999999999999999
Q ss_pred HhcCChhhHHhhcC
Q 035828 768 VALGRWKDAVEIGK 781 (781)
Q Consensus 768 ~~~g~~~~A~~l~~ 781 (781)
...|++++|++.++
T Consensus 196 ~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 196 LLKGKAEEAARAAA 209 (217)
T ss_dssp TC------------
T ss_pred HHccCHHHHHHHHH
Confidence 99999999988653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-13 Score=143.95 Aligned_cols=348 Identities=10% Similarity=-0.020 Sum_probs=182.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhcC----------CC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcC-----
Q 035828 402 NTIGVNALMHMYINCGDLVAAFSLLQRISH----------NS-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQ----- 465 (781)
Q Consensus 402 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----- 465 (781)
....||.|-..+...|+.++|++.|++... .| ...+|+.+...|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456677777777788888888777765311 12 23467777777777888888877777765421
Q ss_pred CCCCC-hhhHHHHHHHh--cCccchHHHHHHHHHHHHhcCCCChHHHHHHHHH---HHhcCChHHHHHHhhhcC---CCC
Q 035828 466 NASPD-SVTLVNVISAC--GNLELAFEGKSLHGLALKSLMGLDTRVQNALITM---YGRCRDIKSASTVFESCY---NCN 536 (781)
Q Consensus 466 ~~~p~-~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~---~~~ 536 (781)
...++ ..++...-.++ ...+++++|...|+...+.... ++..+..+..+ +...++.++|++.+++.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 01111 22333322222 2334667777777766654321 23333333333 233455556666655433 223
Q ss_pred hhhHHHHHHHHHh----CCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHH
Q 035828 537 LCTWNCMISAFSQ----NKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSAL 610 (781)
Q Consensus 537 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 610 (781)
...+..+...+.. .++.++|.+.+++. ...| +...+..+...+...|+++.|...++...+....
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------- 279 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN--------- 279 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC---------
Confidence 3344444333332 34556666666665 4333 3445555666666666666666666666554322
Q ss_pred HHhhhcCCChhhHHHHHHHHHhc-------------------CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCc
Q 035828 611 LDMYSNCKSNAAWSSMISAYGYH-------------------GKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGL 670 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~~-------------------~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~ 670 (781)
+..+|..+...|... +.+++|+..+++..+ ..| +..++..+...+...|+
T Consensus 280 --------~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 280 --------NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTC
T ss_pred --------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhcc
Confidence 112344444444321 123455555555554 223 23355556666666666
Q ss_pred HHHHHHHHHHhHHHcCCCCCc----chHHHHHHH-hhhcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHH
Q 035828 671 VDEGLQYYNNMLEEYDVRPET----EHHVCIVDM-LGRSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQ 744 (781)
Q Consensus 671 ~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 744 (781)
+++|.+.|++.++. .|+. ..+..+... +...|++++|++.+++. .+.|+....... .+.+.+
T Consensus 350 ~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHH
Confidence 66666666666543 2321 122222222 23456666666666554 344544322222 233445
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 745 VAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 745 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
++++.++.+|+++.++..||.+|...|++++|++.++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566667789999999999999999999999998763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-12 Score=138.63 Aligned_cols=302 Identities=11% Similarity=-0.005 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHhhcC-CCC-cccHHHHHHH---HHhCCChHHHHHHHHHHHHcCCCCCCh-hhHHHHHHHh----cCccc
Q 035828 417 GDLVAAFSLLQRISH-NSD-TSCWNIVIVA---CTQNGHFQEAIKTFKSMTQQQNASPDS-VTLVNVISAC----GNLEL 486 (781)
Q Consensus 417 ~~~~~a~~~~~~~~~-~~~-~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~----~~~~~ 486 (781)
+++++|...|++... .|+ +..+..+... +...++.++|++.|++..+.. |+. ..+..+...+ ...++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---p~~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---PDNQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC---SSCHHHHHHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC---CcchHHHHHHHHHHHHHHhhhhH
Confidence 456677777765422 232 3333333322 334556666666666666532 332 2222222222 23345
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc
Q 035828 487 AFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL 563 (781)
Q Consensus 487 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 563 (781)
.+.|...++...... +.+...+..+...|.+.|++++|...+++.. +.+..++..+..+|...+....+ ..
T Consensus 229 ~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~-----~~ 302 (472)
T 4g1t_A 229 EGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN-----LR 302 (472)
T ss_dssp -CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH-----C-
T ss_pred HHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhh-----HH
Confidence 555666555554433 2234445555555556666666665555443 12223343333333211100000 00
Q ss_pred CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHH
Q 035828 564 EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELF 643 (781)
Q Consensus 564 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 643 (781)
... ........+..+.|...++...+.... +..+|..+...+...|++++|++.|
T Consensus 303 --~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 303 --ENG------MYGKRKLLELIGHAVAHLKKADEANDN-----------------LFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHCTT-----------------TCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred --HHH------HHHHHHHHhhHHHHHHHHHHHhhcCCc-----------------hhhhhhhHHHHHHHhccHHHHHHHH
Confidence 000 000001112356667777766665432 2236788889999999999999999
Q ss_pred HHHHhCCCCCCHH--HHHHHHH-HhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-C-
Q 035828 644 HEMCNSGIRPTKS--SVISLLS-ACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-P- 718 (781)
Q Consensus 644 ~~m~~~g~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 718 (781)
++..+....|... .+..+.. .....|+.++|++.+++.++ +.|+....... ...+.+++++. .
T Consensus 358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSK 425 (472)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHh
Confidence 9998854333221 2233322 23467899999999999874 46765332222 22333444433 2
Q ss_pred CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHH
Q 035828 719 IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLS 764 (781)
Q Consensus 719 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 764 (781)
.+.++.+|..++..+...|++++|++.++++++++|.+|.+...+|
T Consensus 426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp CC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2446778999999999999999999999999999999998887766
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=132.93 Aligned_cols=218 Identities=12% Similarity=0.059 Sum_probs=167.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCC--CCchHHHHHHHhhh
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQ--ENSFISSALLDMYS 615 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 615 (781)
.|..+...+...|++++|+..|++. ...++...+..+..++...|+++.|...++...+.... ++...
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~--------- 77 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV--------- 77 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH---------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH---------
Confidence 4455555666666666666666666 21155566666666666777777777777666553221 11100
Q ss_pred cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchH
Q 035828 616 NCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHH 694 (781)
Q Consensus 616 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 694 (781)
...+|..+...+...|++++|++.|++..+ ..|+.. .+...|++++|.+.++++.+. .|+ ...+
T Consensus 78 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~ 142 (258)
T 3uq3_A 78 ---ISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAYV---NPEKAEEA 142 (258)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHHC---CHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHHc---CcchHHHH
Confidence 023678888999999999999999999998 556643 455568899999999998753 665 5788
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
..++..+...|++++|++.++++ .. +.+...+..++..+...|++++|...++++++..|+++..+..++.+|...|+
T Consensus 143 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999887 33 34566788999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhc
Q 035828 773 WKDAVEIG 780 (781)
Q Consensus 773 ~~~A~~l~ 780 (781)
+++|.+.+
T Consensus 223 ~~~A~~~~ 230 (258)
T 3uq3_A 223 YASALETL 230 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-13 Score=131.31 Aligned_cols=150 Identities=12% Similarity=-0.049 Sum_probs=115.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML 701 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 701 (781)
+|..+...+...|++++|++.++++.+ ..|+.......+..+...|++++|...+++.... .|+......++..+
T Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~ 187 (275)
T 1xnf_A 113 AHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWNIVEFY 187 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCcchHHHHHHHHH
Confidence 577778888889999999999999987 4566555555555566779999999999888765 34433334477778
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 702 GRSGKLQEAYEFIKNL-PIQPK-----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 702 ~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
...++.++|++.+++. ...|+ ...+..++..+...|++++|...++++.+.+|++...+ +.++...|++++
T Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~ 264 (275)
T 1xnf_A 188 LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQ 264 (275)
T ss_dssp TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHh
Confidence 8888899999988876 33332 46788889999999999999999999999999876544 778888899999
Q ss_pred HHhh
Q 035828 776 AVEI 779 (781)
Q Consensus 776 A~~l 779 (781)
|++-
T Consensus 265 a~~~ 268 (275)
T 1xnf_A 265 DQDD 268 (275)
T ss_dssp C---
T ss_pred hHHH
Confidence 8764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-13 Score=128.29 Aligned_cols=131 Identities=8% Similarity=-0.047 Sum_probs=99.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQ 708 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 708 (781)
...|++++|+..++++.. ..| +...+..+...+...|++++|...++++++. .|+ ...+..++..|.+.|+++
T Consensus 116 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~ 190 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFP 190 (258)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHH
Confidence 445677788888887776 344 3446777777788888888888888888765 444 577888888888888888
Q ss_pred HHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccC------CCCCchHHHHHHH
Q 035828 709 EAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLE------PENVGYYISLSNM 766 (781)
Q Consensus 709 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 766 (781)
+|++.++++ ...| +...+..+...+...|++++|...++++.++. |++..++..+..+
T Consensus 191 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 191 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 888888776 3334 45677888888888899999999999998888 8777777766654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.3e-13 Score=128.37 Aligned_cols=241 Identities=10% Similarity=-0.063 Sum_probs=174.9
Q ss_pred HHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC----HhHHHHHHHHhcc
Q 035828 510 NALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPN----EISIVSILSACTQ 581 (781)
Q Consensus 510 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~ 581 (781)
......+...|++++|...|+... +.+...|..+..++...|++++|+..+++. ...++ ...+..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 344556667777777777777654 233456777777777778888888777777 31122 2236667777778
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHH
Q 035828 582 LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVIS 660 (781)
Q Consensus 582 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ 660 (781)
.|+++.|...++...+.... +..+|..+...+...|++++|++.+++..+. .| +...+..
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~ 147 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-----------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYE 147 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-----------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHH
Confidence 88888888888887775432 2236888888999999999999999999874 45 4556766
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCC---hHHHHHHHHhC----CCCCCc------chH
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGK---LQEAYEFIKNL----PIQPKP------GVW 726 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~~------~~~ 726 (781)
+...+...+++++|.+.++++++. .|+ ...+..+...+...|+ +++|+..++++ ...|+. ..+
T Consensus 148 l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 224 (272)
T 3u4t_A 148 LGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 663455556999999999999866 666 5778888888888888 88888887766 222442 467
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
..+...+...|++++|...++++++++|+++.+...++......+.
T Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 225 EYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 7788888999999999999999999999999999998887765543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-12 Score=130.51 Aligned_cols=243 Identities=12% Similarity=0.091 Sum_probs=191.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCC-hhHHHHHHhhc-CCCC-CHhHHHHHHHHh
Q 035828 506 TRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKA-EVRALELFRHL-EFEP-NEISIVSILSAC 579 (781)
Q Consensus 506 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 579 (781)
...+..+...+.+.|++++|+..++.+. ..+...|+.+..++...|+ +++|+..|++. ...| +...|..+-.++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3445556667777888888888887665 3345678888888888886 88888888888 6666 456677777777
Q ss_pred cccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHH
Q 035828 580 TQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSV 658 (781)
Q Consensus 580 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~ 658 (781)
...|++++|...++.+++.... +..+|..+...+...|++++|++.++++.+ +.| +...|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-----------------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~ 237 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-----------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVW 237 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-----------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHH
Confidence 8888888888888888775542 334788888899999999999999999998 455 56688
Q ss_pred HHHHHHhcc-cCcHHHH-----HHHHHHhHHHcCCCCC-cchHHHHHHHhhhcC--ChHHHHHHHHhCCCCCC-cchHHH
Q 035828 659 ISLLSACSH-SGLVDEG-----LQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSG--KLQEAYEFIKNLPIQPK-PGVWGA 728 (781)
Q Consensus 659 ~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ 728 (781)
+.+..++.. .|..++| ++.+++.++. .|+ ...|..+..+|.+.| ++++|++.+.++...|+ ...+..
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~ 314 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAF 314 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHH
Confidence 888888888 6665777 5888888765 776 578889999999888 69999999888755554 456788
Q ss_pred HHHHHHhcC--------C-cHHHHHHHHHH-hccCCCCCchHHHHHHHHHhc
Q 035828 729 MLSACSHHG--------D-TKMGKQVAELL-FKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 729 l~~~~~~~g--------~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 770 (781)
++..+.+.| + .++|+.+++++ .+++|.....|..++..+..+
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 888887764 3 58999999999 999999999999999887654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=123.91 Aligned_cols=213 Identities=13% Similarity=0.089 Sum_probs=150.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhc
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSN 616 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 616 (781)
.|..+...+...|++++|+..|++. ...| +...+..+...+...|+++.|...++.+.+....
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------------- 89 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS--------------- 89 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---------------
Confidence 4445555566666666666666666 4444 4555666666667777777777777776665322
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHH
Q 035828 617 CKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHV 695 (781)
Q Consensus 617 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 695 (781)
+..+|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|.+.++++.+. .|+ ...+.
T Consensus 90 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~ 163 (243)
T 2q7f_A 90 --AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARF 163 (243)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred --chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHH
Confidence 22257778888889999999999999998742 336678888889999999999999999999865 454 67888
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
.++..+.+.|++++|++.++++ ...| +...+..+...+...|++++|...++++.+..|+++.++..++.+....|+
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 9999999999999999999887 3333 466788899999999999999999999999999999999988887766554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.44 E-value=9.7e-12 Score=119.50 Aligned_cols=205 Identities=10% Similarity=0.016 Sum_probs=158.9
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhh
Q 035828 538 CTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYS 615 (781)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 615 (781)
..|..+...+...|++++|+..|+++ ...| +...+..+...+...|++++|.+.++.+.+....
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------------- 103 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-------------- 103 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--------------
Confidence 35566666777777777777777776 4333 4556666777777778888888888777765432
Q ss_pred cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cch
Q 035828 616 NCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEH 693 (781)
Q Consensus 616 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~ 693 (781)
+...|..+...+...|++++|+++++++.+.+..| +...+..+...+...|++++|.+.++++.+. .|+ ...
T Consensus 104 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 177 (252)
T 2ho1_A 104 ---NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSV 177 (252)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHH
T ss_pred ---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHH
Confidence 22257778888889999999999999998744455 4557888888899999999999999998865 454 578
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
+..++..+...|++++|.+.++++ ...| +...+..+...+...|+.++|.+.++++.+..|+++.....
T Consensus 178 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 889999999999999999999887 4444 45567778888889999999999999999999998876544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-11 Score=129.49 Aligned_cols=345 Identities=9% Similarity=0.029 Sum_probs=219.7
Q ss_pred CCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCH---HHHHHHHHhhcCCCCcccHHHHHHHHHhCC-----Ch
Q 035828 380 SPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDL---VAAFSLLQRISHNSDTSCWNIVIVACTQNG-----HF 451 (781)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~ 451 (781)
..|++++|.+.+....+.|. ...+..|-..|...|+. ++|...|++.... ++..+..+...+...+ ++
T Consensus 15 ~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---CTGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred hCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCH
Confidence 45899999999999988763 33344455556667777 8999999888544 7777777777565555 77
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccch---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCh----HH
Q 035828 452 QEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELA---FEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDI----KS 524 (781)
Q Consensus 452 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~ 524 (781)
++|+..|++..+.| . |+ .+..+-..|...+.. ..+...+......| +......|...|...+.+ +.
T Consensus 91 ~~A~~~~~~Aa~~g-~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 91 HEAESLLKKAFANG-E-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHTT-C-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHCC-C-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 89999999998876 2 22 444444455444443 33444455544454 355566677777777744 44
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhCC---ChhHHHHHHhhc-C-CCCCHhHHHHHHHHhccc----CchHHHHHHHHHH
Q 035828 525 ASTVFESCYNCNLCTWNCMISAFSQNK---AEVRALELFRHL-E-FEPNEISIVSILSACTQL----GVLRHGKQIHGHV 595 (781)
Q Consensus 525 A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~ 595 (781)
+..+++.....++..+..+...|...| +.++|++.|++. . -.++...+..+-..+... ++.+.|...|+..
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 555666666667778888999999999 899999999998 4 444555444555555443 6889999999887
Q ss_pred HHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC---
Q 035828 596 FHLGFQENSFISSALLDMYSNCKSNAAWSSMISA-Y--GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG--- 669 (781)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~--- 669 (781)
. .|. +.++..+... + ...+++++|+++|++..+.| +...+..|...|. .|
T Consensus 244 a-~g~-------------------~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 244 A-PGY-------------------PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp G-GGS-------------------THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred c-CCC-------------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 6 322 2245555555 3 45889999999999998876 5566666666665 44
Q ss_pred --cHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh----cCChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCc
Q 035828 670 --LVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR----SGKLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDT 739 (781)
Q Consensus 670 --~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 739 (781)
+.++|.++|++.. .-++..+..|...|.. ..++++|.+++++.....+......+...+.. ..|.
T Consensus 300 ~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCH
T ss_pred CCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCH
Confidence 9999999998874 2245677778877766 44899999999887444455667777776654 4589
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 740 KMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
++|..+++++.+.++.+ +...+..+
T Consensus 375 ~~A~~~~~~A~~~g~~~--a~~~l~~l 399 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDTPE--ANDLATQL 399 (452)
T ss_dssp HHHHHHHHHHHTTCCHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHH--HHHHHHHH
Confidence 99999999998877543 33344443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-12 Score=128.96 Aligned_cols=220 Identities=12% Similarity=0.107 Sum_probs=186.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCc-hHHHHHHHHHHHHhCCCCCchHHHHHHHhh
Q 035828 538 CTWNCMISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGV-LRHGKQIHGHVFHLGFQENSFISSALLDMY 614 (781)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 614 (781)
..|..+...+...|++++|+..|++. .+.|+ ...|..+-.++...|+ +++|...++.+++....
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------------- 164 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------------- 164 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-------------
Confidence 47888888999999999999999999 77785 5677778888889996 99999999999886653
Q ss_pred hcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cc
Q 035828 615 SNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TE 692 (781)
Q Consensus 615 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~ 692 (781)
+..+|+.+...+...|++++|+..|+++.+ +.| +...|..+..++...|++++|+..++++++. .|+ ..
T Consensus 165 ----~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~ 235 (382)
T 2h6f_A 165 ----NYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNS 235 (382)
T ss_dssp ----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHH
T ss_pred ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHH
Confidence 334788888999999999999999999998 566 5678999999999999999999999999866 776 58
Q ss_pred hHHHHHHHhhh-cCChHHH-----HHHHHhC-CCCCC-cchHHHHHHHHHhcC--CcHHHHHHHHHHhccCCCCCchHHH
Q 035828 693 HHVCIVDMLGR-SGKLQEA-----YEFIKNL-PIQPK-PGVWGAMLSACSHHG--DTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 693 ~~~~l~~~~~~-~g~~~~A-----~~~~~~~-~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
.|..+..+|.+ .|..++| ++.++++ ...|+ ...|..+...+...| ++++|...++++ +.+|+++.++..
T Consensus 236 a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~ 314 (382)
T 2h6f_A 236 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAF 314 (382)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHH
Confidence 89999999999 6666888 4667665 45564 557888888888888 799999999999 889999999999
Q ss_pred HHHHHHhcC--------C-hhhHHhhc
Q 035828 763 LSNMYVALG--------R-WKDAVEIG 780 (781)
Q Consensus 763 l~~~~~~~g--------~-~~~A~~l~ 780 (781)
|+++|.+.| + .++|++++
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~ 341 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELC 341 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHH
Confidence 999999975 2 58888765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-12 Score=115.97 Aligned_cols=157 Identities=12% Similarity=0.126 Sum_probs=139.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVC 696 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 696 (781)
++..|..+...|...|++++|++.|++..+ +.| +..++..+..++...|++++|...++..... .|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 345788999999999999999999999998 456 5568899999999999999999999999765 565 577888
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
+...+...+++++|.+.+.+. ...| +...+..+...+...|++++|+..++++++.+|+++.++..+|.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 889999999999999999877 3444 45678888999999999999999999999999999999999999999999999
Q ss_pred hHHhhc
Q 035828 775 DAVEIG 780 (781)
Q Consensus 775 ~A~~l~ 780 (781)
+|++.+
T Consensus 159 ~A~~~~ 164 (184)
T 3vtx_A 159 EAVKYF 164 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-12 Score=134.43 Aligned_cols=206 Identities=10% Similarity=-0.014 Sum_probs=172.7
Q ss_pred hhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCch-HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHH
Q 035828 553 EVRALELFRHL-EFEP-NEISIVSILSACTQLGVL-RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISA 629 (781)
Q Consensus 553 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~ 629 (781)
.++++..+++. ...| +...+..+-..+...|++ ++|...++...+.... +..+|..+...
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-----------------~~~a~~~lg~~ 146 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-----------------LVEAWNQLGEV 146 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-----------------CHHHHHHHHHH
Confidence 44555556555 4444 556666667777788888 8888888887765432 23368888999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccc---------CcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHS---------GLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
|...|++++|++.|++..+ ..|+...+..+...+... |++++|.+.+++.++. .|+ ...|..+..
T Consensus 147 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~ 221 (474)
T 4abn_A 147 YWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGN 221 (474)
T ss_dssp HHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 9999999999999999998 568888999999999999 9999999999999865 666 588999999
Q ss_pred Hhhhc--------CChHHHHHHHHhC-CCCC----CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 700 MLGRS--------GKLQEAYEFIKNL-PIQP----KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 700 ~~~~~--------g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
+|... |++++|++.++++ ...| +...|..+...+...|++++|...++++.+++|+++.++..++.+
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 301 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQL 301 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99998 9999999999987 4455 566889999999999999999999999999999999999999999
Q ss_pred HHhcCChhhHHhhc
Q 035828 767 YVALGRWKDAVEIG 780 (781)
Q Consensus 767 ~~~~g~~~~A~~l~ 780 (781)
+...|++++|++.+
T Consensus 302 ~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 302 LEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998753
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=8.2e-12 Score=119.99 Aligned_cols=193 Identities=12% Similarity=0.021 Sum_probs=164.7
Q ss_pred HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 569 EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 569 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
...+..+...+...|+++.|...++.+.+.... +..+|..+...+...|++++|++.++++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 99 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-----------------SADAHAALAVVFQTEMEPKLADEEYRKALA 99 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355677777888999999999999998876432 223678888889999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-Ccch
Q 035828 649 SGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGV 725 (781)
Q Consensus 649 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 725 (781)
.. +.+...+..+...+...|++++|.++++++.+ .+..|+ ...+..++..+...|++++|++.++++ ...| +...
T Consensus 100 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 177 (252)
T 2ho1_A 100 SD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV 177 (252)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHH
Confidence 42 33667888899999999999999999999975 235665 578889999999999999999999887 3334 4667
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+..++..+...|++++|...++++.+..|+++..+..++.+|...|++++|.+.+
T Consensus 178 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999998865
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.1e-12 Score=116.79 Aligned_cols=193 Identities=17% Similarity=0.056 Sum_probs=124.6
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHH
Q 035828 503 GLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILS 577 (781)
Q Consensus 503 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 577 (781)
+++...+..+...+.+.|++++|...|++.. +.+...|..+..++.+.|++++|+..|++. ...|+ ...+..+-.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3456677777888888899999999888765 334568888888899999999999999888 66674 456666666
Q ss_pred Hhccc-----------CchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 035828 578 ACTQL-----------GVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEM 646 (781)
Q Consensus 578 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 646 (781)
.+... |++++|...++...+.... +..+|..+...+...|++++|+..|++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-----------------YAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-----------------cHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 67666 7777777777666664332 1224566666667777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 647 CNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 647 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
.+.. .+...+..+..++...|++++|...++++++. .|+ ...+..+...+.+.|++++|++.+++.
T Consensus 145 l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 145 LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6654 55666666767777777777777777776654 454 456666667777777777776666553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-11 Score=118.55 Aligned_cols=228 Identities=12% Similarity=0.039 Sum_probs=161.8
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHhhhcCCC-ChhhHHHHHHHHHh----CCChhHHHHHHhhc-CCCCCHhHHHHHHHH
Q 035828 505 DTRVQNALITMYGRCRDIKSASTVFESCYNC-NLCTWNCMISAFSQ----NKAEVRALELFRHL-EFEPNEISIVSILSA 578 (781)
Q Consensus 505 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 578 (781)
+...+..+...|...|++++|...|+....+ +...+..+...|.. .+++++|+..|++. ... +...+..+-..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~ 83 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNL 83 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 4556677777888888888888888876643 44677777778888 88888888888887 332 55666666666
Q ss_pred hcc----cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 035828 579 CTQ----LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGY----HGKGWEAIELFHEMCNSG 650 (781)
Q Consensus 579 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g 650 (781)
+.. .+++++|...++...+.+ + ..++..+...|.. .+++++|++.|++..+.+
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~----------------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---Y----------------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---C----------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---C----------------ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 766 788888888888777654 1 1256777777777 788888888888877754
Q ss_pred CCCCHHHHHHHHHHhcc----cCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh----cCChHHHHHHHHhCCCCCC
Q 035828 651 IRPTKSSVISLLSACSH----SGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR----SGKLQEAYEFIKNLPIQPK 722 (781)
Q Consensus 651 ~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~ 722 (781)
+...+..+...+.. .+++++|..++++..+. + +...+..+...|.. .+++++|++.+++.-...+
T Consensus 145 ---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 145 ---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred ---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 45566666666666 77888888888877653 1 34566777777777 7888888888776521122
Q ss_pred cchHHHHHHHHHh----cCCcHHHHHHHHHHhccCCCCCch
Q 035828 723 PGVWGAMLSACSH----HGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 723 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
...+..+...+.. .+++++|...++++.+++|+++..
T Consensus 218 ~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 218 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 4566667777777 778888888888888887765433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-11 Score=115.50 Aligned_cols=206 Identities=11% Similarity=0.049 Sum_probs=152.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhh
Q 035828 538 CTWNCMISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYS 615 (781)
Q Consensus 538 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 615 (781)
..|..+...+...|++++|+..|++. ...| +...+..+...+...|+++.|...++.+.+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------- 74 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-------------- 74 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------------
Confidence 34555566666666666666666666 3333 3455666666666777777777777776654321
Q ss_pred cCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cc
Q 035828 616 NCKSNAAWSSMISAYGYH-GKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TE 692 (781)
Q Consensus 616 ~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~ 692 (781)
+..+|..+...+... |++++|++.++++.+.+..|+ ...+..+...+...|++++|...++++.+. .|+ ..
T Consensus 75 ---~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 148 (225)
T 2vq2_A 75 ---SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPP 148 (225)
T ss_dssp ---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHH
T ss_pred ---ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCch
Confidence 222577778888899 999999999999987434444 467888888899999999999999998865 555 57
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-CCCC--CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHH
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-PIQP--KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISL 763 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 763 (781)
.+..++..+.+.|++++|.+.++++ ...| +...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8888999999999999999998876 3333 445566666667789999999999999999999988776655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-12 Score=121.86 Aligned_cols=192 Identities=6% Similarity=0.048 Sum_probs=148.6
Q ss_pred CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 035828 568 NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMC 647 (781)
Q Consensus 568 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 647 (781)
...++..+...+...|+++.|...++.+.+.... +...|..+...+...|++++|++.+++..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 84 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-----------------DAIPYINFANLLSSVNELERALAFYDKAL 84 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456667777888999999999999998874332 22367788888999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCcc
Q 035828 648 NSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPG 724 (781)
Q Consensus 648 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~ 724 (781)
+.. +.+...+..+...+...|++++|.+.++++.+. .| +...+..++..+.+.|++++|++.++++ .. +.+..
T Consensus 85 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 160 (243)
T 2q7f_A 85 ELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160 (243)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence 742 336678888999999999999999999999876 44 4678889999999999999999999887 33 34566
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+..++..+...|++++|...++++.+..|+++..+..++.+|...|++++|++.+
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999999999865
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-12 Score=132.78 Aligned_cols=297 Identities=10% Similarity=0.028 Sum_probs=191.2
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh-----hhHHHHHHHhcCccchHHHHHHHHHHHHhc--CCCChHH
Q 035828 436 SCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS-----VTLVNVISACGNLELAFEGKSLHGLALKSL--MGLDTRV 508 (781)
Q Consensus 436 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~ 508 (781)
..+......+...|++++|+..|++..+.. |+. ..+..+...+...|+++.|...++...... ...+.
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-- 84 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL-- 84 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH--
Confidence 344555667777888888888888877753 332 234444455555556666655555443211 00000
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc-CC---CCC----HhHHHHHHHHhc
Q 035828 509 QNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL-EF---EPN----EISIVSILSACT 580 (781)
Q Consensus 509 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~ 580 (781)
.....+..+...+...|++++|+..+++. .. .++ ..++..+...+.
T Consensus 85 --------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 85 --------------------------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 138 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 00123444445555555555555555554 11 111 234555555666
Q ss_pred ccCc--------------------hHHHHHHHHHHHHhCCC-CCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHH
Q 035828 581 QLGV--------------------LRHGKQIHGHVFHLGFQ-ENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEA 639 (781)
Q Consensus 581 ~~~~--------------------~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A 639 (781)
..|+ ++.|...++...+.... ++... ...+|..+...+...|++++|
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAA------------QGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHH------------HHHHHHHHHHHHHHHTBHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHH------------HHHHHHHHHHHHHHccCHHHH
Confidence 6677 77777777665442100 11100 122577888889999999999
Q ss_pred HHHHHHHHhCC-CCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCChHHH
Q 035828 640 IELFHEMCNSG-IRPT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 640 ~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 710 (781)
++.+++..+.. -.++ ..++..+...+...|++++|...+++.++...-.++ ..++..+...|...|++++|
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999887521 0122 237888888999999999999999998764222222 46788899999999999999
Q ss_pred HHHHHhC-C---CCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccC------CCCCchHHHHHHHHHhcCChhh
Q 035828 711 YEFIKNL-P---IQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLE------PENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 711 ~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
.+.++++ . ..++ ...+..+...+...|++++|...++++.++. |....++..++.+|...|+...
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9998876 1 1111 4467888888999999999999999999874 3345678889999999987643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-11 Score=115.48 Aligned_cols=193 Identities=12% Similarity=0.037 Sum_probs=164.1
Q ss_pred HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035828 569 EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCN 648 (781)
Q Consensus 569 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 648 (781)
...+..+...+...|+++.|...++.+.+.... +...|..+...+...|++++|++.++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 70 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-----------------NELAWLVRAEIYQYLKVNDKAQESFRQALS 70 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-----------------chHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456677788889999999999999998876532 223678888889999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHhccc-CcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-Ccc
Q 035828 649 SGIRPTKSSVISLLSACSHS-GLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPG 724 (781)
Q Consensus 649 ~g~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 724 (781)
.. +.+..++..+...+... |++++|...++++.+ .+..|+ ...+..++..+...|++++|++.++++ ...| +..
T Consensus 71 ~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 148 (225)
T 2vq2_A 71 IK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148 (225)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred hC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch
Confidence 42 33667888899999999 999999999999986 234555 578889999999999999999999887 3344 466
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCC-CCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEP-ENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+..++..+...|++++|...++++.+..| +++..+..++..+...|+.++|...+
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 788899999999999999999999999999 99999999999999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-11 Score=124.92 Aligned_cols=333 Identities=11% Similarity=0.001 Sum_probs=219.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCc-
Q 035828 409 LMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHF---QEAIKTFKSMTQQQNASPDSVTLVNVISACGNL- 484 (781)
Q Consensus 409 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~- 484 (781)
+...+.+.|++++|.++|++.....+...+..+-..|...|+. ++|+..|++..+. +...+..+-..+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC---------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCC
Confidence 4556778899999999999885445666666676777778888 9999999998753 333333444423232
Q ss_pred ----cchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHH---HHHHhhhcC-CCChhhHHHHHHHHHhCCChhHH
Q 035828 485 ----ELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKS---ASTVFESCY-NCNLCTWNCMISAFSQNKAEVRA 556 (781)
Q Consensus 485 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 556 (781)
++.++|...++...+.|... .+..|...|...+..++ +.+.+.... ..+...+..+...|...+.++++
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 48899999999998877433 55566777776655433 444444333 23456777788888888866555
Q ss_pred HHH----Hhhc-CCCCCHhHHHHHHHHhcccC---chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHH
Q 035828 557 LEL----FRHL-EFEPNEISIVSILSACTQLG---VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMIS 628 (781)
Q Consensus 557 ~~~----~~~~-~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~ 628 (781)
... ++.. ...|+ .+..|-..+...| +.++|...++...+.|..... .+..+..
T Consensus 161 ~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~-----------------~~~~Lg~ 221 (452)
T 3e4b_A 161 LDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ-----------------RVDSVAR 221 (452)
T ss_dssp HHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH-----------------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH-----------------HHHHHHH
Confidence 544 4443 35555 6666777777788 999999999999988865432 2344555
Q ss_pred HHHhc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-h--cccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHh
Q 035828 629 AYGYH----GKGWEAIELFHEMCNSGIRPTKSSVISLLSA-C--SHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDML 701 (781)
Q Consensus 629 ~~~~~----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 701 (781)
.|... +++++|+++|++.. .| +...+..|... + ...++.++|.++|++..+. + ++..+..|...|
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y 293 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLY 293 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHH
Confidence 55443 79999999999987 33 34455555555 3 4589999999999998754 3 566777888888
Q ss_pred hhcC-----ChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh---
Q 035828 702 GRSG-----KLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA--- 769 (781)
Q Consensus 702 ~~~g-----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 769 (781)
. .| ++++|++++++.. +.++..+..+...+.. ..|+++|..+++++.+ +.++.+...|+.+|..
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKG 369 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTT
T ss_pred H-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCC
Confidence 7 55 9999999999988 5566677777766655 3499999999999887 4568899999999985
Q ss_pred -cCChhhHHhhc
Q 035828 770 -LGRWKDAVEIG 780 (781)
Q Consensus 770 -~g~~~~A~~l~ 780 (781)
.++.++|...+
T Consensus 370 ~~~d~~~A~~~~ 381 (452)
T 3e4b_A 370 TKPDPLNAYVFS 381 (452)
T ss_dssp BCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 45788887654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-11 Score=117.06 Aligned_cols=126 Identities=9% Similarity=-0.025 Sum_probs=72.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCC--ChHHHHHHHHHH
Q 035828 440 IVIVACTQNGHFQEAIKTFKSMTQQQNASPD-SVTLVNVISACGNLELAFEGKSLHGLALKSLMGL--DTRVQNALITMY 516 (781)
Q Consensus 440 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~ 516 (781)
.....+...|++++|+..|++..+.. |+ ...+..+...+...|++++|...++.+...+..+ ....+..+...|
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 33444555555555555555555432 22 2244444445555555555555555554422111 122356666677
Q ss_pred HhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC
Q 035828 517 GRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPN 568 (781)
Q Consensus 517 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~ 568 (781)
...|++++|.+.|+... +.+...|..+...+...|++++|+..|++. ...|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 140 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC
Confidence 77777777777776554 334467777777788888888888888777 55554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=5.8e-11 Score=115.53 Aligned_cols=216 Identities=12% Similarity=0.033 Sum_probs=146.0
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcc----cCchHHHHHHHHHHHHhCCCCCchHHHHH
Q 035828 536 NLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQ----LGVLRHGKQIHGHVFHLGFQENSFISSAL 610 (781)
Q Consensus 536 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 610 (781)
+..++..+...+...|++++|+..|++. . .-+...+..+-..+.. .+++++|...++...+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~----- 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN----- 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH-----
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH-----
Confidence 3445666667777777777777777777 3 1123445555556666 777777777777777665 222
Q ss_pred HHhhhcCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc----cCcHHHHHHHHHHhH
Q 035828 611 LDMYSNCKSNAAWSSMISAYGY----HGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH----SGLVDEGLQYYNNML 682 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 682 (781)
++..+...|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|.+++++..
T Consensus 76 -----------a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 76 -----------GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp -----------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 45556666666 777778887777777654 55667777777776 777778887777776
Q ss_pred HHcCCCCCcchHHHHHHHhhh----cCChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccCC
Q 035828 683 EEYDVRPETEHHVCIVDMLGR----SGKLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 683 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 754 (781)
+. + +...+..+...|.. .+++++|++.+++.-...+...+..+...+.. .+++++|...++++.+.+|
T Consensus 142 ~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 142 DL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred hc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 54 2 34556667777766 77777777777765222344566667777777 7777888887777777755
Q ss_pred CCCchHHHHHHHHHh----cCChhhHHhhc
Q 035828 755 ENVGYYISLSNMYVA----LGRWKDAVEIG 780 (781)
Q Consensus 755 ~~~~~~~~l~~~~~~----~g~~~~A~~l~ 780 (781)
+.++..|+.+|.. .|++++|++.+
T Consensus 218 --~~a~~~l~~~~~~g~~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 218 --GGGCFNLGAMQYNGEGVTRNEKQAIENF 245 (273)
T ss_dssp --HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred --HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 6677777777777 77777777654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=120.12 Aligned_cols=209 Identities=10% Similarity=-0.018 Sum_probs=161.0
Q ss_pred CCChhHHHHHHhhc-CCC----C-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhH
Q 035828 550 NKAEVRALELFRHL-EFE----P-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAW 623 (781)
Q Consensus 550 ~~~~~~A~~~~~~~-~~~----p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 623 (781)
.|++++|+..|+++ ... | +...+..+...+...|+++.|...++.+.+.... +..+|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----------------~~~~~ 80 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-----------------MPEVF 80 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------CHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-----------------cHHHH
Confidence 45666777777766 321 2 2445666666777778888888888777765432 22367
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhh
Q 035828 624 SSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLG 702 (781)
Q Consensus 624 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 702 (781)
..+...+...|++++|++.|++..+. .| +...+..+...+...|++++|...++++.+. .|+......+...+.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~ 155 (275)
T 1xnf_A 81 NYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAE 155 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHH
Confidence 88888899999999999999999984 44 5678999999999999999999999999865 676555555555667
Q ss_pred hcCChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCChhhHH
Q 035828 703 RSGKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE----NVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
..|++++|...+++. ...|+......++..+...++.++|...++++.+..|. ++..+..++.+|.+.|++++|+
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 889999999999765 33343344445777788889999999999999988774 3788999999999999999999
Q ss_pred hhc
Q 035828 778 EIG 780 (781)
Q Consensus 778 ~l~ 780 (781)
+.+
T Consensus 236 ~~~ 238 (275)
T 1xnf_A 236 ALF 238 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-12 Score=132.32 Aligned_cols=195 Identities=14% Similarity=0.072 Sum_probs=141.4
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHHh----CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC-----------
Q 035828 571 SIVSILSACTQLGVLRHGKQIHGHVFHL----GFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK----------- 635 (781)
Q Consensus 571 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~----------- 635 (781)
.+..+...+...|+++.|...++...+. +-.+. ...+|..+...|...|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 192 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS---------------EGRALYNLGNVYHAKGKHLGQRNPGKFG 192 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---------------HHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH---------------HHHHHHHHHHHHHHcCcccccccchhhh
Confidence 3444445555666666666666554432 11111 12257777888888899
Q ss_pred ------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHH
Q 035828 636 ------GWEAIELFHEMCNS----GIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDM 700 (781)
Q Consensus 636 ------~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~ 700 (781)
+++|++.+++..+. +..| ...++..+...+...|++++|.+.+++.++...-.++ ...+..+...
T Consensus 193 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (411)
T 4a1s_A 193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999998887542 1112 2347888888999999999999999998765221122 2378899999
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-------CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC------CchHHHHHHH
Q 035828 701 LGRSGKLQEAYEFIKNL-PIQP-------KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN------VGYYISLSNM 766 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~ 766 (781)
|...|++++|++.++++ ...| ....+..+...+...|++++|...++++.+..++. ...+..++.+
T Consensus 273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 352 (411)
T 4a1s_A 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNA 352 (411)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 99999999999998876 1111 14567888888999999999999999999886543 4488899999
Q ss_pred HHhcCChhhHHhhc
Q 035828 767 YVALGRWKDAVEIG 780 (781)
Q Consensus 767 ~~~~g~~~~A~~l~ 780 (781)
|.+.|++++|.+.+
T Consensus 353 ~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 353 HSAIGGHERALKYA 366 (411)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHH
Confidence 99999999999865
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=134.52 Aligned_cols=156 Identities=17% Similarity=0.236 Sum_probs=142.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
+.+|+.+...|...|++++|++.|++..+ +.|+ ..++..+..++.+.|++++|.+.|++.++. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 44789999999999999999999999998 5675 568999999999999999999999999865 787 5899999
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 698 VDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
..+|.+.|++++|++.++++ ...|+ ...+..+...+...|++++|+..++++++++|+++.++.+|+.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999987 55564 56899999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 035828 776 AVEIG 780 (781)
Q Consensus 776 A~~l~ 780 (781)
|.+.+
T Consensus 164 A~~~~ 168 (723)
T 4gyw_A 164 YDERM 168 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=128.51 Aligned_cols=258 Identities=14% Similarity=0.069 Sum_probs=180.9
Q ss_pred HHHHHHHhcCChHHHHHHhhhcC---CCC----hhhHHHHHHHHHhCCChhHHHHHHhhc-------CCCCC-HhHHHHH
Q 035828 511 ALITMYGRCRDIKSASTVFESCY---NCN----LCTWNCMISAFSQNKAEVRALELFRHL-------EFEPN-EISIVSI 575 (781)
Q Consensus 511 ~li~~~~~~g~~~~A~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~-~~~~~~l 575 (781)
.....+...|++++|...|++.. ..+ ...|..+...+...|++++|+..+++. +..|. ...+..+
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 33444445555555555554433 111 124555566666666666666666655 11222 3456677
Q ss_pred HHHhcccCchHHHHHHHHHHHHhCCC-CCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC-------------------
Q 035828 576 LSACTQLGVLRHGKQIHGHVFHLGFQ-ENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK------------------- 635 (781)
Q Consensus 576 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~------------------- 635 (781)
...+...|+++.|...++...+.... ++... ...++..+...+...|+
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVG------------EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccc------------hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 77888999999999999887653211 11110 12257778888899999
Q ss_pred -hHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcC
Q 035828 636 -GWEAIELFHEMCNS----GIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSG 705 (781)
Q Consensus 636 -~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 705 (781)
+++|++.+++..+. +..|. ..++..+...+...|++++|...+++.++...-.++ ..++..++..|...|
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 99999998887542 21222 347888888999999999999999998765322233 248889999999999
Q ss_pred ChHHHHHHHHhC-CC---CCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcC
Q 035828 706 KLQEAYEFIKNL-PI---QPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN------VGYYISLSNMYVALG 771 (781)
Q Consensus 706 ~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g 771 (781)
++++|++.+++. .. .++ ..++..+...+...|++++|...++++.+..+.. +..+..++.+|...|
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 999999998876 11 111 4467888888999999999999999999886543 557889999999999
Q ss_pred ChhhHHhhc
Q 035828 772 RWKDAVEIG 780 (781)
Q Consensus 772 ~~~~A~~l~ 780 (781)
++++|++.+
T Consensus 322 ~~~~A~~~~ 330 (406)
T 3sf4_A 322 NHDQAMHFA 330 (406)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999999865
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-08 Score=110.23 Aligned_cols=226 Identities=8% Similarity=-0.022 Sum_probs=157.0
Q ss_pred HHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHH-HHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHh
Q 035828 525 ASTVFESCY---NCNLCTWNCMISAFSQNKAEVRAL-ELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHL 598 (781)
Q Consensus 525 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 598 (781)
+..+|+++. ......|-..+.-+...|+.++|. .+|++. +..| +...+...+......|+++.|..+|+.++..
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555443 334567777777788888888896 999888 6445 4444556666777889999999999988764
Q ss_pred CC---------CCCch-HHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhcc
Q 035828 599 GF---------QENSF-ISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS-GIRPTKSSVISLLSACSH 667 (781)
Q Consensus 599 ~~---------~~~~~-~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~ 667 (781)
.. .|+.. ....+-.. ....|...+....+.|..+.|..+|++..+. +. +....|...+..-.+
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~-----~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSK-----LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHT
T ss_pred HHHHhhhhhhccCcchhhhhhhccc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence 21 12100 00000000 1225888888888899999999999999875 21 122333322222223
Q ss_pred -cCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC----CcchHHHHHHHHHhcCCcH
Q 035828 668 -SGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP----KPGVWGAMLSACSHHGDTK 740 (781)
Q Consensus 668 -~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~ 740 (781)
.++.+.|.++|+..++. .|+ ...+...++.....|+.+.|..+|+++ ...| ....|..++.-....|+.+
T Consensus 482 ~~~d~e~Ar~ife~~Lk~---~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY---FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred hCCCHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 35699999999999987 343 455678888888899999999999987 3333 3457888888888999999
Q ss_pred HHHHHHHHHhccCCCCCch
Q 035828 741 MGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 741 ~A~~~~~~~~~~~p~~~~~ 759 (781)
.+..+.+++.+..|+++..
T Consensus 559 ~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 559 SVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHHHhCCCCcHH
Confidence 9999999999999997654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.2e-12 Score=126.37 Aligned_cols=229 Identities=14% Similarity=0.071 Sum_probs=152.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhc-------CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCC-CCchHHHHH
Q 035828 540 WNCMISAFSQNKAEVRALELFRHL-------EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQ-ENSFISSAL 610 (781)
Q Consensus 540 ~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 610 (781)
+..+...+...|++++|++.+++. +..| ....+..+...+...|+++.|...++...+.... ++...
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---- 121 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG---- 121 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH----
Confidence 334444444444444444444443 1111 1234444555556666666666666555432111 11100
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCC--------------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHh
Q 035828 611 LDMYSNCKSNAAWSSMISAYGYHGK--------------------GWEAIELFHEMCNS----GIRP-TKSSVISLLSAC 665 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~ 665 (781)
...++..+...+...|+ +++|++.+++..+. +..| ...++..+...+
T Consensus 122 --------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 193 (338)
T 3ro2_A 122 --------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTH 193 (338)
T ss_dssp --------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 01256677777888888 89999888876542 1122 234778888889
Q ss_pred cccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCChHHHHHHHHhC-CC---CCC----cchHHHHHHHH
Q 035828 666 SHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI---QPK----PGVWGAMLSAC 733 (781)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~ 733 (781)
...|++++|.+.+++..+.....++ ...+..++..+...|++++|.+.+++. .. .++ ...+..+...+
T Consensus 194 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (338)
T 3ro2_A 194 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 273 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 9999999999999998765222222 247888999999999999999998876 11 111 44677888889
Q ss_pred HhcCCcHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCChhhHHhhc
Q 035828 734 SHHGDTKMGKQVAELLFKLEPEN------VGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...|++++|...++++.+..|.. ..++..++.+|.+.|++++|.+.+
T Consensus 274 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99999999999999999876543 447889999999999999999865
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.5e-11 Score=122.30 Aligned_cols=275 Identities=14% Similarity=0.071 Sum_probs=172.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh-----hhHHHHHHHhcCccchHHHHHHHHHHHHhc--C---CCChHH
Q 035828 439 NIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS-----VTLVNVISACGNLELAFEGKSLHGLALKSL--M---GLDTRV 508 (781)
Q Consensus 439 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~~~~~ 508 (781)
..+...+...|++++|+..|++..+.. |+. ..+..+...+...|++++|...+++..... . ......
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG---TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc---ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344556677778888888887777753 332 234445555555666666666555544321 0 112233
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCC-CHhHHHHHHHHhcccCc---
Q 035828 509 QNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEP-NEISIVSILSACTQLGV--- 584 (781)
Q Consensus 509 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~~--- 584 (781)
+..+...|...|++++|...+++.. +++.+.+..| ...++..+...+...|+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHL------------------------TLARQLGDRLSEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH------------------------HHHHHhhchHHHHHHHHHHHHHHHHcCcccc
Confidence 3444444555555555554443321 0111101111 12344555556666666
Q ss_pred --------------hHHHHHHHHHHHHh----CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 035828 585 --------------LRHGKQIHGHVFHL----GFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEM 646 (781)
Q Consensus 585 --------------~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 646 (781)
++.|...++...+. +..+. ...+|..+...+...|++++|++.+++.
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGA---------------QGRACGNLGNTYYLLGDFQAAIEHHQER 249 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHH---------------HHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 66776666654432 11111 1226778888899999999999999998
Q ss_pred HhCCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 647 CNSGI-RPT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 647 ~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
.+..- .++ ..++..+...+...|++++|.+.+++.++...-..+ ..++..+...|...|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76211 112 237888889999999999999999998765221222 467888999999999999999998876
Q ss_pred -CC------CC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 718 -PI------QP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 718 -~~------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
.. .+ ....+..+...+...|++++|...++++.++.+.
T Consensus 330 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 330 LAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 11 11 1346778888899999999999999999988754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-10 Score=117.23 Aligned_cols=269 Identities=11% Similarity=0.043 Sum_probs=173.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCh-----hhHHHHHHHhcCccchHHHHHHHHHHHHh----cCCC-ChH
Q 035828 438 WNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDS-----VTLVNVISACGNLELAFEGKSLHGLALKS----LMGL-DTR 507 (781)
Q Consensus 438 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 507 (781)
+......+...|++++|+..|++..+.. |+. ..+..+...+...|+++.|...++..... +..+ ...
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3444566778888888888888887753 332 34445555556666666666666554322 1010 122
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc----CCCCC----HhHHHHHHHHh
Q 035828 508 VQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL----EFEPN----EISIVSILSAC 579 (781)
Q Consensus 508 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~ 579 (781)
.+..+...+...|++++|+..+++. ...++ ..++..+...+
T Consensus 85 -------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 133 (338)
T 3ro2_A 85 -------------------------------ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 133 (338)
T ss_dssp -------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 3444444555555555555555544 11111 22455555566
Q ss_pred cccCc--------------------hHHHHHHHHHHHHh----CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC
Q 035828 580 TQLGV--------------------LRHGKQIHGHVFHL----GFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK 635 (781)
Q Consensus 580 ~~~~~--------------------~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 635 (781)
...|+ ++.|...++...+. +..+. ....+..+...+...|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~ 198 (338)
T 3ro2_A 134 HAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA---------------QGRAFGNLGNTHYLLGN 198 (338)
T ss_dssp HHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH---------------HHHHHHHHHHHHHHHTC
T ss_pred HHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHH---------------HHHHHHHHHHHHHHhCC
Confidence 66666 77777776665432 11111 11257778888999999
Q ss_pred hHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCC
Q 035828 636 GWEAIELFHEMCNSGI-RPT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGK 706 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~ 706 (781)
+++|++.+++..+... .++ ..++..+...+...|++++|.+.+++.++...-.++ ..++..+...+...|+
T Consensus 199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence 9999999998875210 111 237888888999999999999999998765222222 4678889999999999
Q ss_pred hHHHHHHHHhC-CC------CC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 707 LQEAYEFIKNL-PI------QP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 707 ~~~A~~~~~~~-~~------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
+++|.+.++++ .. .+ ....+..+...+...|++++|...++++.++.++
T Consensus 279 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999998876 11 11 1336778888899999999999999999988765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.1e-11 Score=106.97 Aligned_cols=131 Identities=12% Similarity=0.035 Sum_probs=107.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
+|..+...|...|++++|+..+...... .| +...+..+...+...++++.|.+.+++..+. .|+ ...+..+..
T Consensus 41 ~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~ 115 (184)
T 3vtx_A 41 TLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGL 115 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 5777778888889999999999888774 34 4556777777888889999999999988765 555 578888999
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 700 MLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
.|.+.|++++|++.+++. ...| +...+..++..+.+.|++++|+..++++++++|+++
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 999999999999998877 4445 456788899999999999999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=7.8e-11 Score=106.88 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=136.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 700 (781)
.|..+...+...|++++|++.++++.+. .+.+...+..+...+...|++++|.+.++++.+. .|+ ...+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHH
Confidence 5667778889999999999999999874 2336678888999999999999999999999866 454 6788899999
Q ss_pred hhhcCChHHHHHHHHhC-C-CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 701 LGRSGKLQEAYEFIKNL-P-IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
+...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++.+..|+++..+..++.+|...|++++|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999887 3 334566788888999999999999999999999999999999999999999999999998
Q ss_pred hc
Q 035828 779 IG 780 (781)
Q Consensus 779 l~ 780 (781)
.+
T Consensus 166 ~~ 167 (186)
T 3as5_A 166 HF 167 (186)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-09 Score=107.92 Aligned_cols=215 Identities=10% Similarity=0.108 Sum_probs=145.5
Q ss_pred HHHHHHhhhcC---CCChhhHHHHHHHHH-------hCCCh-------hHHHHHHhhc-C-CCCCH-hHHHHHHHHhccc
Q 035828 523 KSASTVFESCY---NCNLCTWNCMISAFS-------QNKAE-------VRALELFRHL-E-FEPNE-ISIVSILSACTQL 582 (781)
Q Consensus 523 ~~A~~~~~~~~---~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~-~-~~p~~-~~~~~ll~~~~~~ 582 (781)
++|..+|++.. ..++..|..+...+. ..|+. ++|...|++. . +.|+. ..+..+...+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 34555555444 234455655555543 34665 7777777777 5 56643 4566667777777
Q ss_pred CchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 035828 583 GVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNA-AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISL 661 (781)
Q Consensus 583 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 661 (781)
|+++.|..+|+..++. .|+. .. +|..+...+.+.|++++|..+|++..+.+ +++...|...
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~ 174 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDID---------------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTA 174 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSC---------------THHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccC---------------ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 7888888888777763 2321 11 47777777788888888888888888742 2233344433
Q ss_pred HHHhc-ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC--cchHHHHHHHH
Q 035828 662 LSACS-HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-P---IQPK--PGVWGAMLSAC 733 (781)
Q Consensus 662 ~~~~~-~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~~~~ 733 (781)
..... ..|+.++|.++|++.++. .|+ ...|..++..+.+.|++++|..+++++ . .+|+ ...|..++..+
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 33322 368888888888888765 454 577888888888888888888888876 2 2543 34677778888
Q ss_pred HhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 734 SHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
...|+.+.|..+++++.+..|+++.
T Consensus 252 ~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 252 SNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHcCCHHHHHHHHHHHHHHcccccc
Confidence 8888888999888888888887554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.4e-10 Score=114.20 Aligned_cols=231 Identities=8% Similarity=0.010 Sum_probs=172.0
Q ss_pred HHHHHHhcCChHHHHHHhhhcCC-----CC----hhhHHHHHHHHHhCCChhHHHHHHhhc----CCCCC-----HhHHH
Q 035828 512 LITMYGRCRDIKSASTVFESCYN-----CN----LCTWNCMISAFSQNKAEVRALELFRHL----EFEPN-----EISIV 573 (781)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~-----~~~~~ 573 (781)
....+...|++++|...++.... ++ ..+|..+...|...|++++|+..+++. ...++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556788999999888886642 22 247788888899999999999988887 12222 34667
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHhCCC-CCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC---
Q 035828 574 SILSACTQLGVLRHGKQIHGHVFHLGFQ-ENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS--- 649 (781)
Q Consensus 574 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--- 649 (781)
.+-..+...|+++.|...++...+.... ++... ...+|..+...|...|++++|++.+++..+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL------------MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 7777888999999999999887653211 11110 1125778889999999999999999998762
Q ss_pred -CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC---cchHHHHHHHhhhcCC---hHHHHHHHHhCCCCC
Q 035828 650 -GIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE---TEHHVCIVDMLGRSGK---LQEAYEFIKNLPIQP 721 (781)
Q Consensus 650 -g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p 721 (781)
+..| ...++..+...+...|++++|.+.+++.++...-..+ ...+..+...+...|+ +++|++++++.+..|
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~ 336 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYA 336 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHH
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHH
Confidence 2323 4557888999999999999999999998764221122 2346678888999999 899999999986555
Q ss_pred C-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCC
Q 035828 722 K-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 722 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 754 (781)
. ...+..+...+...|++++|...++++.++..
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4 33677788889999999999999999987643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.8e-11 Score=120.67 Aligned_cols=226 Identities=9% Similarity=0.061 Sum_probs=169.0
Q ss_pred HHHHHHhCCChhHHHHHHhhc-CC---CCC----HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCc-hHHHHHHHh
Q 035828 543 MISAFSQNKAEVRALELFRHL-EF---EPN----EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENS-FISSALLDM 613 (781)
Q Consensus 543 l~~~~~~~~~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 613 (781)
....+...|++++|+..|++. .. .|+ ..++..+-..+...|+++.|...+....+.-...+. ..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 181 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI------- 181 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH-------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH-------
Confidence 455678899999999999998 32 343 246777778889999999999999887663211111 00
Q ss_pred hhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHc---
Q 035828 614 YSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS----GIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEY--- 685 (781)
Q Consensus 614 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 685 (781)
....+++.+...|...|++++|++.+++..+. +-.+ ...++..+...+...|++++|.+.+++.++..
T Consensus 182 ----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 182 ----RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 01226788889999999999999999988752 1111 12378889999999999999999999987621
Q ss_pred CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CC-----CCC-cchHHHHHHHHHhcCC---cHHHHHHHHHHhccCC
Q 035828 686 DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-----QPK-PGVWGAMLSACSHHGD---TKMGKQVAELLFKLEP 754 (781)
Q Consensus 686 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p 754 (781)
+..|. ..++..++..|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ .++|...+++. ...|
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~ 336 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYA 336 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHH
Confidence 12244 578899999999999999999998876 11 222 2234667777778888 88888888876 3346
Q ss_pred CCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 755 ENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 755 ~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.....+..++.+|...|++++|.+.+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~ 362 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYF 362 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66778889999999999999998765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-11 Score=122.37 Aligned_cols=227 Identities=15% Similarity=0.181 Sum_probs=144.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-C--------CCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHh------CCCC
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-E--------FEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHL------GFQE 602 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~--------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~ 602 (781)
++..+...+...|++++|+.+|+++ . ..| ....+..+...+...|+++.|...++...+. +-.|
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444555555555555444 1 122 1234455555666667777777766665543 1112
Q ss_pred CchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHhcccCcHHHHH
Q 035828 603 NSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS------GIRP-TKSSVISLLSACSHSGLVDEGL 675 (781)
Q Consensus 603 ~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~~~~~~a~ 675 (781)
. ...+|..+...+...|++++|++.+++..+. +..| ....+..+...+...|++++|.
T Consensus 109 ~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 109 A---------------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp H---------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred H---------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 1226788888999999999999999998864 2233 3457888889999999999999
Q ss_pred HHHHHhHHHc-----CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCC----------CCCCcc-hH------HHHHHH
Q 035828 676 QYYNNMLEEY-----DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLP----------IQPKPG-VW------GAMLSA 732 (781)
Q Consensus 676 ~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~~~-~~------~~l~~~ 732 (781)
++++++++.. +..|. ...+..++..|...|++++|.+.++++- ..+... .+ ......
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 9999987642 11333 4678899999999999999999987761 122211 22 222333
Q ss_pred HHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 733 CSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+...+.+.+|...++++....|..+.++..++.+|.+.|++++|++.+
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp ----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345677778888888888888999999999999999999999999875
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.4e-10 Score=104.26 Aligned_cols=205 Identities=9% Similarity=0.078 Sum_probs=137.5
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHhhc-CCC--CCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 035828 536 NLCTWNCMISAFSQNKAEVRALELFRHL-EFE--PNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLD 612 (781)
Q Consensus 536 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 612 (781)
++..|......+...|++++|+..|++. ... ++...+..+..++...|++++|...++...+....
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------- 74 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN----------- 74 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-----------
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-----------
Confidence 4556777777888888888888888887 433 56666666666777778888888888777754332
Q ss_pred hhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 613 MYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-K-------SSVISLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 613 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
+..+|..+...+...|++++|++.+++..+ ..|+ . ..|..+...+...|++++|.+.+++++
T Consensus 75 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-- 144 (228)
T 4i17_A 75 ------LANAYIGKSAAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT-- 144 (228)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT--
T ss_pred ------hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH--
Confidence 122577777777888888888888887776 3443 3 346666667777788888888887775
Q ss_pred cCCCCC---cchHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch
Q 035828 685 YDVRPE---TEHHVCIVDMLGRSGKLQEAYEFIKNLP-I-QPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 685 ~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
...|+ ...+..+..+|...|+. .++++. . ..+...+... .....+.+++|...++++.+++|+++.+
T Consensus 145 -~~~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 145 -DVTSKKWKTDALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp -TSSCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred -hcCCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 34665 35666777777655543 222221 1 1122222222 2334566799999999999999999999
Q ss_pred HHHHHHHHHh
Q 035828 760 YISLSNMYVA 769 (781)
Q Consensus 760 ~~~l~~~~~~ 769 (781)
...++.+...
T Consensus 217 ~~~l~~i~~~ 226 (228)
T 4i17_A 217 KQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9988877543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-08 Score=107.18 Aligned_cols=423 Identities=9% Similarity=-0.040 Sum_probs=251.6
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCC---HHHHHH
Q 035828 258 FEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNS---LSKAEL 334 (781)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~ 334 (781)
..+-+..|++-.... +-|..+|..++..+.+.+.++.+..+++.+... .+.....|...+..-.+.++ ++.+..
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 344444455554432 457777777777777777777788888777766 33456666666776666666 777777
Q ss_pred HHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcC--CCchhHHHHHHHH
Q 035828 335 LFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGF--SNNTIGVNALMHM 412 (781)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~ 412 (781)
+|++... .+ .|+...|...+.-
T Consensus 125 lfeRal~--------------------------------------------------------~~~~~~sv~LW~~Yl~f 148 (679)
T 4e6h_A 125 VLARCLS--------------------------------------------------------KELGNNDLSLWLSYITY 148 (679)
T ss_dssp HHHHHTC--------------------------------------------------------SSSCCCCHHHHHHHHHH
T ss_pred HHHHHHH--------------------------------------------------------hcCCCCCHHHHHHHHHH
Confidence 7776655 22 3777777777766
Q ss_pred HHhcCCH--------HHHHHHHHhh----cC-CC-CcccHHHHHHHHHh---------CCChHHHHHHHHHHHHcCCCCC
Q 035828 413 YINCGDL--------VAAFSLLQRI----SH-NS-DTSCWNIVIVACTQ---------NGHFQEAIKTFKSMTQQQNASP 469 (781)
Q Consensus 413 ~~~~~~~--------~~a~~~~~~~----~~-~~-~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~~~~~p 469 (781)
..+.++. +.+.++|+.. .. .+ +...|...+..... .++.+.+..+|++.+... ...
T Consensus 149 ~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP-~~~ 227 (679)
T 4e6h_A 149 VRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP-MDC 227 (679)
T ss_dssp HHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC-CSS
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc-cHH
Confidence 5554443 2334566553 22 33 33567776665432 234566777777776421 111
Q ss_pred ChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhh-------cCC--------
Q 035828 470 DSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFES-------CYN-------- 534 (781)
Q Consensus 470 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~-------- 534 (781)
-..+|.....- .+.-+...+..++.+. ..+++.|...+.+ +..
T Consensus 228 ~~~~w~~Y~~f-e~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 228 LESMWQRYTQW-EQDVNQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHH-HHHHCTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHHHHHHHHHH-HHhcCcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 11222111111 0000011111111111 0111122222211 100
Q ss_pred ------C--C------hhhHHHHHHHHHhCCC-------hhHHHHHHhhc-C-CCCCHhHHHHHHHHhcccCchHHHH-H
Q 035828 535 ------C--N------LCTWNCMISAFSQNKA-------EVRALELFRHL-E-FEPNEISIVSILSACTQLGVLRHGK-Q 590 (781)
Q Consensus 535 ------~--~------~~~~~~l~~~~~~~~~-------~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~-~ 590 (781)
| + ...|...+.---..+. .+.+..+|++. . ..-....|......+...|+.+.|. .
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 0 0 1245555443333221 23345667666 3 2224555555666666778888886 8
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCCC-------
Q 035828 591 IHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSG---------IRPT------- 654 (781)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---------~~p~------- 654 (781)
+++...... |.. ...|-..+......|+++.|.++|+++.... -.|+
T Consensus 366 il~rAi~~~--P~s---------------~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 366 YLKLGQQCI--PNS---------------AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHHC--TTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHhC--CCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 888877643 221 2246677788888999999999999998631 0142
Q ss_pred -----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcC-ChHHHHHHHHhC-C-CCCCcchH
Q 035828 655 -----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSG-KLQEAYEFIKNL-P-IQPKPGVW 726 (781)
Q Consensus 655 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~-~~p~~~~~ 726 (781)
...|...++...+.|+.+.|..+|.++.+.. ..+....|...+..-.+.+ +.+.|.++|+.. . .+.+...|
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w 507 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHH
Confidence 2367888888888899999999999997641 1122445555555444544 599999999876 2 33345567
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCC---CCchHHHHHHHHHhcCChhhHHhhc
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPE---NVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...+......|+.+.|..+++++++..|+ ....+..+.......|+.+.+.+|.
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78888888899999999999999999874 4456777777788889999998875
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-10 Score=108.57 Aligned_cols=152 Identities=8% Similarity=-0.029 Sum_probs=132.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
++..|......+...|++++|++.|++..+..-.++...+..+..++...|++++|.+.+++.++. .|+ ...|..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHH
Confidence 344677788889999999999999999998643367778888899999999999999999999854 776 5789999
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCC-c-------chHHHHHHHHHhcCCcHHHHHHHHHHhccCCC--CCchHHHHHHH
Q 035828 698 VDMLGRSGKLQEAYEFIKNL-PIQPK-P-------GVWGAMLSACSHHGDTKMGKQVAELLFKLEPE--NVGYYISLSNM 766 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 766 (781)
..+|...|++++|++.+++. ...|+ . ..+..+...+...|++++|+..++++++++|+ ++.++..++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 99999999999999999887 44454 3 35777888888999999999999999999999 99999999999
Q ss_pred HHhcCCh
Q 035828 767 YVALGRW 773 (781)
Q Consensus 767 ~~~~g~~ 773 (781)
|...|+.
T Consensus 163 ~~~~~~~ 169 (228)
T 4i17_A 163 FYNNGAD 169 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=9.5e-10 Score=108.81 Aligned_cols=206 Identities=10% Similarity=0.030 Sum_probs=159.8
Q ss_pred hHHHHHHhhc-CCCC-CHhHHHHHHHHhc-------ccCch-------HHHHHHHHHHHHhCCCCCchHHHHHHHhhhcC
Q 035828 554 VRALELFRHL-EFEP-NEISIVSILSACT-------QLGVL-------RHGKQIHGHVFHLGFQENSFISSALLDMYSNC 617 (781)
Q Consensus 554 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 617 (781)
++|+..|++. ...| +...|..+...+. ..|++ ++|..+++..++.- .|+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~-------------- 97 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKK-------------- 97 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTT--------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-Ccc--------------
Confidence 6788888888 5555 4445655555554 35775 89999999888731 232
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-H-HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchH
Q 035828 618 KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-S-SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHH 694 (781)
Q Consensus 618 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 694 (781)
+...|..++..+...|++++|.++|++..+ +.|+. . .|..+...+.+.|++++|..+|++.++. .|. ...|
T Consensus 98 -~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~ 171 (308)
T 2ond_A 98 -NMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVY 171 (308)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHH
T ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHH
Confidence 223688889999999999999999999998 56653 3 7999999999999999999999999743 454 4555
Q ss_pred HHHHHHhh-hcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhcc---CCC-CCchHHHHHHHH
Q 035828 695 VCIVDMLG-RSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKL---EPE-NVGYYISLSNMY 767 (781)
Q Consensus 695 ~~l~~~~~-~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~ 767 (781)
...+.... ..|++++|.++++++ ...| +...|..++..+.+.|+.+.|..+++++++. .|+ ....+..++..+
T Consensus 172 ~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 44444322 379999999999887 3334 5668889999999999999999999999996 443 667889999999
Q ss_pred HhcCChhhHHhhc
Q 035828 768 VALGRWKDAVEIG 780 (781)
Q Consensus 768 ~~~g~~~~A~~l~ 780 (781)
...|+.++|.+++
T Consensus 252 ~~~g~~~~a~~~~ 264 (308)
T 2ond_A 252 SNIGDLASILKVE 264 (308)
T ss_dssp HHHSCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 9999999998875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=115.26 Aligned_cols=191 Identities=11% Similarity=0.075 Sum_probs=155.8
Q ss_pred ChHHHHHHHHHHHhcCCh-HHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHh
Q 035828 505 DTRVQNALITMYGRCRDI-KSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSAC 579 (781)
Q Consensus 505 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 579 (781)
+...+..+...|...|++ ++|.+.|++.. ..+...|..+..+|...|++++|++.|++. ...|+...+..+...+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~ 180 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 555666666777777777 77777777654 334567888888888889999999999888 7888877888888888
Q ss_pred ccc---------CchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhc--------CChHHHHHH
Q 035828 580 TQL---------GVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYH--------GKGWEAIEL 642 (781)
Q Consensus 580 ~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~--------~~~~~A~~~ 642 (781)
... |++++|...++...+.... +...|..+...|... |++++|++.
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-----------------DGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 888 9999999999998886532 233678888888888 999999999
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 643 FHEMCNSGIRP----TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 643 ~~~m~~~g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
|++..+ +.| +...|..+..++...|++++|.+.|++.++. .|+ ...+..+..++...|++++|++.+.++
T Consensus 244 ~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 244 YAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998 455 6778999999999999999999999999865 676 467889999999999999999876655
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-08 Score=104.89 Aligned_cols=228 Identities=9% Similarity=0.069 Sum_probs=165.9
Q ss_pred HHHHHhcCChHHHHHHhhhcCC-----CC----hhhHHHHHHHHHhCCChhHHHHHHhhc----CCCCC-----HhHHHH
Q 035828 513 ITMYGRCRDIKSASTVFESCYN-----CN----LCTWNCMISAFSQNKAEVRALELFRHL----EFEPN-----EISIVS 574 (781)
Q Consensus 513 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~-----~~~~~~ 574 (781)
...+...|++++|...|+.... ++ ..++..+...|...|++++|+..+++. ...++ ..++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3446678899999888876542 22 246777888889999999999888887 12221 346667
Q ss_pred HHHHhcccCchHHHHHHHHHHHHhCCC-CCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 035828 575 ILSACTQLGVLRHGKQIHGHVFHLGFQ-ENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS---- 649 (781)
Q Consensus 575 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---- 649 (781)
+-..+...|+++.|...++...+.... ++... ...++..+...|...|++++|++.+++..+.
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRF------------IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK 255 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 777888999999999998887653211 11110 1125778888899999999999999998761
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC---cchHHHHHHHhhhcCC---hHHHHHHHHhCCCCCC-
Q 035828 650 GIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE---TEHHVCIVDMLGRSGK---LQEAYEFIKNLPIQPK- 722 (781)
Q Consensus 650 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~- 722 (781)
+.+....++..+...+.+.|++++|...+++.++...-.++ ...+..+...+...|+ +.+|++.+++.+..|+
T Consensus 256 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~ 335 (378)
T 3q15_A 256 VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYI 335 (378)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHH
Confidence 22223568888889999999999999999998876333223 2355666677778888 8899999988754443
Q ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 723 PGVWGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 723 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
...+..+...+...|++++|...++++.+.
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 335667788888899999999999988764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.5e-10 Score=113.53 Aligned_cols=233 Identities=10% Similarity=0.103 Sum_probs=143.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhcCC--------CC---hhhHHHHHHHHHhCCChhHHHHHHhhc-CC--------CC
Q 035828 508 VQNALITMYGRCRDIKSASTVFESCYN--------CN---LCTWNCMISAFSQNKAEVRALELFRHL-EF--------EP 567 (781)
Q Consensus 508 ~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~--------~p 567 (781)
.+..+...+...|++++|...++++.. .+ ...+..+...+...|++++|+..+++. .. .|
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 344444455555555555555544332 11 134555555666666666666666555 11 22
Q ss_pred -CHhHHHHHHHHhcccCchHHHHHHHHHHHHh------CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHH
Q 035828 568 -NEISIVSILSACTQLGVLRHGKQIHGHVFHL------GFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAI 640 (781)
Q Consensus 568 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 640 (781)
....+..+...+...|++++|...++...+. +..|.. ..++..+...+...|++++|+
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV---------------AKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH---------------HHHHHHHHHHHHHcCCHHHHH
Confidence 2345666777778888888888888777654 222221 226788888999999999999
Q ss_pred HHHHHHHhC------CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHc------CCCCC-cchHH------HHHHH
Q 035828 641 ELFHEMCNS------GIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEY------DVRPE-TEHHV------CIVDM 700 (781)
Q Consensus 641 ~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~~~~------~l~~~ 700 (781)
++++++.+. +..|+ ..++..+...+...|++++|.+.++++++.. ...|. ...+. .+...
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 999998763 22343 3478888899999999999999999987631 12222 22222 22333
Q ss_pred hhhcCChHHHHHHHHhCC-CCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 701 LGRSGKLQEAYEFIKNLP-IQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
+...+.+.+|...+++.. ..| ...++..+...+...|++++|...+++++++.|+
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 445556666666666653 333 4557888999999999999999999999988775
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-08 Score=102.33 Aligned_cols=200 Identities=11% Similarity=-0.063 Sum_probs=100.5
Q ss_pred HHHHHHHHhCCChhHHHHHHhhc-------CCC--CC-HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHH
Q 035828 541 NCMISAFSQNKAEVRALELFRHL-------EFE--PN-EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSAL 610 (781)
Q Consensus 541 ~~l~~~~~~~~~~~~A~~~~~~~-------~~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 610 (781)
..+...+...|++++|...+++. +.. |. ...+..+...+...|++++|...++...+.........
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 172 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ---- 172 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH----
Confidence 34444555566666666665554 111 22 22344455555666777777777666655433221110
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHH-----HHHHHhcccCcHHHHHHHHHHhHHH
Q 035828 611 LDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-SSVI-----SLLSACSHSGLVDEGLQYYNNMLEE 684 (781)
Q Consensus 611 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~ 684 (781)
...+|..+...+...|++++|...+++.....-.++. ..+. ..+..+...|++++|...+++..+.
T Consensus 173 --------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 173 --------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp --------GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred --------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 0114666666666667777777766666542111110 1111 1122345666666666666665422
Q ss_pred cCCCCC-----cchHHHHHHHhhhcCChHHHHHHHHhC-------CCCCCc-chHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 685 YDVRPE-----TEHHVCIVDMLGRSGKLQEAYEFIKNL-------PIQPKP-GVWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 685 ~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
.|. ...+..+...+...|++++|.+.+++. +..++. ..+..+..++...|+.++|...++++.+
T Consensus 245 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 245 ---EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp ---CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 221 113445556666666666666666554 111111 1334445555566666666666666665
Q ss_pred cCCC
Q 035828 752 LEPE 755 (781)
Q Consensus 752 ~~p~ 755 (781)
+.++
T Consensus 322 ~~~~ 325 (373)
T 1hz4_A 322 LANR 325 (373)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 5544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.9e-09 Score=107.30 Aligned_cols=227 Identities=11% Similarity=0.021 Sum_probs=165.2
Q ss_pred HHHHHHHhCCChhHHHHHHhhc-C---CCCC----HhHHHHHHHHhcccCchHHHHHHHHHHHHhCCC-CCchHHHHHHH
Q 035828 542 CMISAFSQNKAEVRALELFRHL-E---FEPN----EISIVSILSACTQLGVLRHGKQIHGHVFHLGFQ-ENSFISSALLD 612 (781)
Q Consensus 542 ~l~~~~~~~~~~~~A~~~~~~~-~---~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 612 (781)
.....+...|++++|+..|++. . ..++ ..++..+-..+...|+++.|...++...+.... ++...
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------ 179 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI------ 179 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh------
Confidence 3445578899999999999998 3 2233 346667777889999999999999887663211 11000
Q ss_pred hhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcC-
Q 035828 613 MYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS----GIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYD- 686 (781)
Q Consensus 613 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 686 (781)
....+++.+...|...|++++|++.+++..+. |..+ ...++..+...+...|++++|.+.+++.++...
T Consensus 180 -----~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 180 -----RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 01226788889999999999999999988752 1111 234788888999999999999999999876211
Q ss_pred -CCCC-cchHHHHHHHhhhcCChHHHHHHHHhC----CCCCC---cchHHHHHHHHHhcCC---cHHHHHHHHHHhccCC
Q 035828 687 -VRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL----PIQPK---PGVWGAMLSACSHHGD---TKMGKQVAELLFKLEP 754 (781)
Q Consensus 687 -~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p 754 (781)
..|. ..++..++..+.+.|++++|.+.+++. ...++ ...+..+...+...|+ .++|...+++. ...|
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~ 333 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHA 333 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHH
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChh
Confidence 2343 578889999999999999999999876 21112 2234445555566778 78888888772 2335
Q ss_pred CCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 755 ENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 755 ~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+....+..++..|...|++++|.+.+
T Consensus 334 ~~~~~~~~la~~y~~~g~~~~A~~~~ 359 (378)
T 3q15_A 334 YIEACARSAAAVFESSCHFEQAAAFY 359 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56677889999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-09 Score=97.14 Aligned_cols=134 Identities=14% Similarity=0.048 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-CcchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-ETEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 700 (781)
.|..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++.+. .| +...+..++..
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~ 119 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHH
Confidence 3445555566677777777777776653 1234556667777777777888888877777654 33 34667777777
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch
Q 035828 701 LGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
+...|++++|.+.++++ ...| +...+..++..+...|++++|...++++.+..|+++..
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 88888888888777765 2223 45567777777888888888888888888887776643
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-09 Score=105.53 Aligned_cols=144 Identities=7% Similarity=-0.037 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcc-
Q 035828 622 AWSSMISAYGYH-GKGWEAIELFHEMCNSGIRPT-------KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETE- 692 (781)
Q Consensus 622 ~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~- 692 (781)
+|+.+...|... |++++|+..|++..+ +.|+ ..++..+...+...|++++|...+++..+...-.+...
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 566777788886 999999999998876 2221 34678888889999999999999999876511111211
Q ss_pred ----hHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc------hHHHHHHHHH--hcCCcHHHHHHHHHHhccCCCCCch
Q 035828 693 ----HHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG------VWGAMLSACS--HHGDTKMGKQVAELLFKLEPENVGY 759 (781)
Q Consensus 693 ----~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~ 759 (781)
.|..++.++...|++++|+..+++. .+.|+.. .+..++.++. ..+++++|+..++++.+++|.....
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 5677888899999999999999887 4555432 2344555554 3567889999998888888876655
Q ss_pred HHHHHHHH
Q 035828 760 YISLSNMY 767 (781)
Q Consensus 760 ~~~l~~~~ 767 (781)
+..+-...
T Consensus 277 ~~~~k~~~ 284 (292)
T 1qqe_A 277 LNKIKESI 284 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55554444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.4e-10 Score=97.95 Aligned_cols=139 Identities=10% Similarity=-0.000 Sum_probs=117.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCC
Q 035828 629 AYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGK 706 (781)
Q Consensus 629 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 706 (781)
.+...|++++|++.++.... ..|+ ...+..+...|...|++++|.+.+++.++. .|+ ...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCc
Confidence 34567899999999998875 3453 346777888999999999999999999865 776 6899999999999999
Q ss_pred hHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHH-HHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 707 LQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQ-VAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 707 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
+++|+..++++ ...|+ ...+..+...+.+.|++++|.+ +++++.+++|+++.++...+.++..+|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999887 55664 5678889999999999877655 5699999999999999999999999886
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.03 E-value=3.5e-09 Score=99.12 Aligned_cols=157 Identities=11% Similarity=0.016 Sum_probs=123.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVC 696 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ 696 (781)
.+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++|...++++++.+.-.|.. ..+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4556677788999999999999999974 343 2477788899999999999999999998773222221 24555
Q ss_pred HHHHhhh------------------cCChHHHHHHHHhC-CCCCCcc-hH-----------------HHHHHHHHhcCCc
Q 035828 697 IVDMLGR------------------SGKLQEAYEFIKNL-PIQPKPG-VW-----------------GAMLSACSHHGDT 739 (781)
Q Consensus 697 l~~~~~~------------------~g~~~~A~~~~~~~-~~~p~~~-~~-----------------~~l~~~~~~~g~~ 739 (781)
+..++.+ .|++++|+..++++ ...|+.. .+ ..+...+.+.|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 6666654 67899999999987 5556543 22 2445567889999
Q ss_pred HHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCChhhHHhhc
Q 035828 740 KMGKQVAELLFKLEPENV---GYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.|+..++++++..|+++ .++..++.+|.+.|++++|++.+
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 999999999999999986 57999999999999999999865
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.2e-09 Score=101.41 Aligned_cols=155 Identities=8% Similarity=0.014 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHhcc--------cCcHHHHHHHHHHhHHHcCCCCC-c
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGI-RPT-KSSVISLLSACSH--------SGLVDEGLQYYNNMLEEYDVRPE-T 691 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~-~ 691 (781)
+..+..++...|++++|+..|++..+..- .|. ...+..+..++.. .|++++|...|+++++. .|+ .
T Consensus 55 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~ 131 (261)
T 3qky_A 55 QFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHE 131 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCT
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCch
Confidence 44455555566666666666666665210 111 2344455555555 66677777777766655 333 1
Q ss_pred chH-----------------HHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHHHHHHHhc----------CCc
Q 035828 692 EHH-----------------VCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAMLSACSHH----------GDT 739 (781)
Q Consensus 692 ~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~ 739 (781)
... ..++..|.+.|++++|+..++++ ...|+ ...+..++.++... |++
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~ 211 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERY 211 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchH
Confidence 222 56788899999999999998876 33343 33566777777655 889
Q ss_pred HHHHHHHHHHhccCCCCCc---hHHHHHHHHHhcCChhhHHhhc
Q 035828 740 KMGKQVAELLFKLEPENVG---YYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 740 ~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++|...++++.+..|+++. +...+..++.+.|+++++..+.
T Consensus 212 ~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 212 RRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 9999999999999999964 5667788888888888876653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-09 Score=102.42 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=129.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHV 695 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 695 (781)
..+-.+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++|...|++.++.+.-.|. ...+.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 35666777788999999999999999984 453 467888889999999999999999999987433333 45777
Q ss_pred HHHHHhhh--------cCChHHHHHHHHhC-CCCCCc-chH-----------------HHHHHHHHhcCCcHHHHHHHHH
Q 035828 696 CIVDMLGR--------SGKLQEAYEFIKNL-PIQPKP-GVW-----------------GAMLSACSHHGDTKMGKQVAEL 748 (781)
Q Consensus 696 ~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~~~~~~ 748 (781)
.+..++.. .|++++|++.++++ ...|+. ... ..+...+...|++++|+..+++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88899988 99999999999887 334443 333 4557778899999999999999
Q ss_pred HhccCCCCC---chHHHHHHHHHhc----------CChhhHHhhc
Q 035828 749 LFKLEPENV---GYYISLSNMYVAL----------GRWKDAVEIG 780 (781)
Q Consensus 749 ~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~l~ 780 (781)
+++..|+++ .++..++.+|... |++++|++.+
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 999999854 5899999999977 8889998865
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-09 Score=117.55 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
+|+.+...|.+.|++++|++.|++..+ +.|+ ...|..+..++...|++++|.+.|++.++. .|+ ...|..+..
T Consensus 45 a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~ 119 (723)
T 4gyw_A 45 AHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLAS 119 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 566666667777777777777777766 4553 456777777777777777777777777644 565 466777777
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccC
Q 035828 700 MLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (781)
+|.+.|++++|++.++++ ...|+ ...+..++..+...|++++|.+.++++.++.
T Consensus 120 ~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 777777777777777665 44453 4466677777777777777777777776653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-09 Score=105.14 Aligned_cols=197 Identities=16% Similarity=0.171 Sum_probs=133.6
Q ss_pred HhHHHHHHHHhcccCchHHHHHHHHHHHHh------CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHH
Q 035828 569 EISIVSILSACTQLGVLRHGKQIHGHVFHL------GFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIEL 642 (781)
Q Consensus 569 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 642 (781)
..++..+...+...|+++.|...++...+. +-.|. ...+|..+...+...|++++|++.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~ 107 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA---------------VAATLNNLAVLYGKRGKYKEAEPL 107 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH---------------HHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH---------------HHHHHHHHHHHHHHhccHHHHHHH
Confidence 345556666667777777777777766553 22221 122688888999999999999999
Q ss_pred HHHHHhC------CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHc-----CCCCC-cchHHHHHHHhhhcCChHH
Q 035828 643 FHEMCNS------GIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEY-----DVRPE-TEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 643 ~~~m~~~------g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~ 709 (781)
+++..+. .-.| ...++..+...+...|++++|..+++++++.. +..|. ..++..+...|.+.|++++
T Consensus 108 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 187 (283)
T 3edt_B 108 CKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQD 187 (283)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 9998763 1123 34578888999999999999999999987641 11333 4688899999999999999
Q ss_pred HHHHHHhCC----------CCCCc-chHHHHHHHHHhcC------CcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 710 AYEFIKNLP----------IQPKP-GVWGAMLSACSHHG------DTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 710 A~~~~~~~~----------~~p~~-~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
|++.++++- ..+.. ..+..+.......+ .+..+...++......|..+..+..++.+|...|+
T Consensus 188 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 188 AETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 999987661 23333 33444433333322 24444444444444556677789999999999999
Q ss_pred hhhHHhhc
Q 035828 773 WKDAVEIG 780 (781)
Q Consensus 773 ~~~A~~l~ 780 (781)
+++|++.+
T Consensus 268 ~~~A~~~~ 275 (283)
T 3edt_B 268 LEAAHTLE 275 (283)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=8.7e-09 Score=100.83 Aligned_cols=159 Identities=10% Similarity=0.015 Sum_probs=116.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhccc-CcHHHHHHHHHHhHHHcCCCCC----c
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNS----GIRP-TKSSVISLLSACSHS-GLVDEGLQYYNNMLEEYDVRPE----T 691 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~ 691 (781)
+|+.+...|...|++++|+..+++..+. |-.+ -..++..+...|... |++++|...+++.++...-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 5777888888999999999998887752 1111 134788888899986 9999999999998865221111 3
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc--------hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch---
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG--------VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY--- 759 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--- 759 (781)
.++..++..|.+.|++++|++.+++. ...|+.. .+..++..+...|+++.|...++++.+++|+.+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 56889999999999999999999886 3334321 45677777888999999999999999999986653
Q ss_pred --HHHHHHHHH--hcCChhhHHhhc
Q 035828 760 --YISLSNMYV--ALGRWKDAVEIG 780 (781)
Q Consensus 760 --~~~l~~~~~--~~g~~~~A~~l~ 780 (781)
+..++..|. ..+++++|++.+
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 445666665 457788888765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.5e-09 Score=114.13 Aligned_cols=172 Identities=12% Similarity=-0.033 Sum_probs=142.7
Q ss_pred cccCchHHHHHHHHHHHH------hCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035828 580 TQLGVLRHGKQIHGHVFH------LGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP 653 (781)
Q Consensus 580 ~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 653 (781)
...|++++|.+.++...+ ....|+ +...|..+...+...|++++|++.|++..+ ..|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~---------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p 464 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE---------------SVELPLMEVRALLDLGDVAKATRKLDDLAE--RVG 464 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT---------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHC
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc---------------chhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCc
Confidence 677888888888888771 122232 233678888889999999999999999998 455
Q ss_pred -CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHH
Q 035828 654 -TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAM 729 (781)
Q Consensus 654 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 729 (781)
+...|..+..++...|++++|.+.|++.++. .|+ ...|..+..+|.+.|++++ ++.++++ ...| +...+..+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~l 540 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGL 540 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHH
Confidence 5568888999999999999999999999865 676 6889999999999999999 9999887 4455 45678999
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
..++...|++++|+..++++.+++|+++.++..++.+|...|+
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999987665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-07 Score=94.48 Aligned_cols=230 Identities=10% Similarity=0.008 Sum_probs=142.5
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcC-------C---CC-hhhHHHHHHHHHhCCChhHHHHHHhhc-C----CCC--CHh
Q 035828 509 QNALITMYGRCRDIKSASTVFESCY-------N---CN-LCTWNCMISAFSQNKAEVRALELFRHL-E----FEP--NEI 570 (781)
Q Consensus 509 ~~~li~~~~~~g~~~~A~~~~~~~~-------~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~----~~p--~~~ 570 (781)
+..+...+...|++++|...+++.. . +. ...+..+...+...|++++|...+++. . ..| ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 3445556666777777766665443 1 11 124555666777788888888888776 2 112 134
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCc-hHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035828 571 SIVSILSACTQLGVLRHGKQIHGHVFHLGFQENS-FISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS 649 (781)
Q Consensus 571 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 649 (781)
++..+...+...|+++.|...++........++. ..+... .....+..+...|++++|...+++....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN-----------ANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH-----------HHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH-----------HHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 5666667778889999999988887664322221 110000 0112334467899999999999998764
Q ss_pred CCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCC---CCc-chHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 035828 650 GIRPT---KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVR---PET-EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP 721 (781)
Q Consensus 650 g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 721 (781)
...+. ...+..+...+...|++++|...+++..+...-. ++. ..+..+..++...|++++|.+.+++. ...+
T Consensus 245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 32211 2256677888899999999999999886542111 122 36777888899999999999998875 1111
Q ss_pred CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 722 KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
... .+..+...| +....+++++....|-
T Consensus 325 ~~g----~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 325 RTG----FISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHC----CCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred ccc----HHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 100 112222333 5566667777666664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=8.8e-09 Score=87.35 Aligned_cols=130 Identities=24% Similarity=0.369 Sum_probs=97.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 700 (781)
.|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|..+++++.+. .|+ ...+..++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 67778888888888888888888887742 235567777778888888888888888888755 343 4667777888
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 701 LGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
+...|++++|.+.++++ ...| +...+..++..+...|++++|...++++.+..|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888887766 2223 4556777777777888888888888888877775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-07 Score=90.33 Aligned_cols=152 Identities=11% Similarity=0.081 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCC-----CcchHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRP-----ETEHHVC 696 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~ 696 (781)
+..+...+...|++++|++++.+....|-.+ +...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHH
Confidence 3456666777888888888888876654322 4456777778888888888888888888654 66 2444555
Q ss_pred HHHH--hhhcC--ChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhcc----------CCCCCchHH
Q 035828 697 IVDM--LGRSG--KLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKL----------EPENVGYYI 761 (781)
Q Consensus 697 l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p~~~~~~~ 761 (781)
|+.+ ....| ++.+|..+|+++ ...|+......+..++.+.|++++|++.++.+.+. +|+++.++.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 5544 33334 888888888887 33444223334444677888999999988887776 478888888
Q ss_pred HHHHHHHhcCChhhHHhh
Q 035828 762 SLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 762 ~l~~~~~~~g~~~~A~~l 779 (781)
+++.+....|+ +|.++
T Consensus 260 N~i~l~~~lgk--~a~~l 275 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDL 275 (310)
T ss_dssp HHHHHHHHTTC--TTHHH
T ss_pred HHHHHHHHhCh--HHHHH
Confidence 88888887886 55544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-09 Score=93.47 Aligned_cols=116 Identities=9% Similarity=0.037 Sum_probs=98.3
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG 737 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 737 (781)
|...+...|++++|++.++... ...|+ ...+..+...|.+.|++++|++.++++ ...| +...|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456677889999999998875 44665 467778999999999999999999987 4555 5668899999999999
Q ss_pred CcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 738 DTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 999999999999999999999999999999999999887653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-07 Score=88.99 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=126.1
Q ss_pred HHHHHhhc-C-CCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhc
Q 035828 556 ALELFRHL-E-FEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYH 633 (781)
Q Consensus 556 A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~ 633 (781)
|+..|++. . -.++..++..+..++...|++++|.+++...+..+..++ +...+..++..+.+.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~---------------~lea~~l~vqi~L~~ 149 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG---------------TTELLLLAIEVALLN 149 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT---------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC---------------cHHHHHHHHHHHHHC
Confidence 45555555 2 234444555555566666777777777766655443221 122567778889999
Q ss_pred CChHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHh--cccC--cHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc
Q 035828 634 GKGWEAIELFHEMCNSGIRP-----TKSSVISLLSAC--SHSG--LVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS 704 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 704 (781)
|+.+.|.+.+++|.+ ..| +..+...|..++ ...| +..+|..+|+++.+. .|+......+..++.+.
T Consensus 150 ~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~ 224 (310)
T 3mv2_B 150 NNVSTASTIFDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQ 224 (310)
T ss_dssp TCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHc
Confidence 999999999999988 577 356667777663 3334 899999999998654 55522233344488999
Q ss_pred CChHHHHHHHHhC-CC-----------CCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 705 GKLQEAYEFIKNL-PI-----------QPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 705 g~~~~A~~~~~~~-~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
|++++|.+.++.+ .. +.++.++..++......|+ .|.++++++.+..|++|.+...
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 9999999998764 21 2345566566555566786 8899999999999999965443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.3e-08 Score=83.71 Aligned_cols=121 Identities=22% Similarity=0.362 Sum_probs=106.0
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCcchHHHHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPGVWGAMLSAC 733 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 733 (781)
.+..+...+...|++++|..+++++.+. .|+ ...+..++..+...|++++|.+.++++ .. +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 4667788888999999999999999865 444 577888999999999999999999887 33 33456788888889
Q ss_pred HhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 734 SHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...|++++|...++++.+..|+++..+..++.+|...|++++|.+.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=93.81 Aligned_cols=153 Identities=11% Similarity=0.008 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cch
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSG---IRPT--KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEH 693 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~ 693 (781)
|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|++.+++.++...-..+ ..+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 4444445555566666666655544310 0111 2355556666666 7777777777666543211111 245
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC---C----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch-----H
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-PIQP---K----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY-----Y 760 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~ 760 (781)
+..+...|.+.|++++|++.+++. ...| . ...+..++..+...|++++|...++++. +.|+.... .
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l 236 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAAL 236 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHH
Confidence 666667777777777777766654 1111 1 1134444445555677777777777777 66654432 2
Q ss_pred HHHHHHHHhcCChhhHHh
Q 035828 761 ISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~ 778 (781)
..++..| ..|+.+++.+
T Consensus 237 ~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 237 EDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHH-HhcCHHHHHH
Confidence 2334434 4556555544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=91.02 Aligned_cols=154 Identities=8% Similarity=0.045 Sum_probs=120.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 700 (781)
.+..+...+...|++++|+..|++..+ ..| +...+..+...+...|++++|...++++.+. .|++..+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 455667778899999999999999887 455 4568888999999999999999999998754 4533333222222
Q ss_pred -hhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCChhh
Q 035828 701 -LGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN--VGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 701 -~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 775 (781)
+...++..+|++.+++. ...| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22333444577777776 4455 46678889999999999999999999999999875 6699999999999999999
Q ss_pred HHhhc
Q 035828 776 AVEIG 780 (781)
Q Consensus 776 A~~l~ 780 (781)
|...+
T Consensus 163 A~~~y 167 (176)
T 2r5s_A 163 IASKY 167 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=98.28 Aligned_cols=154 Identities=6% Similarity=-0.022 Sum_probs=128.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcc-hHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETE-HHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~ 699 (781)
.+..+...+...|++++|+..|++..+ ..| +...+..+...+...|++++|...++++.+. .|+.. .......
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~~~ 193 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHHHH
Confidence 456677778899999999999999988 456 4568888999999999999999999998654 66643 2333334
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCChhh
Q 035828 700 MLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN--VGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 775 (781)
.+.+.++.++|++.+++. ...| +...+..+...+...|++++|...++++++.+|++ +.++..|+.+|...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 467888889999888876 4445 56688899999999999999999999999999998 8899999999999999999
Q ss_pred HHhhc
Q 035828 776 AVEIG 780 (781)
Q Consensus 776 A~~l~ 780 (781)
|...+
T Consensus 274 a~~~~ 278 (287)
T 3qou_A 274 LASXY 278 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=5e-08 Score=89.83 Aligned_cols=138 Identities=9% Similarity=0.028 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM 700 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 700 (781)
++.+...|...|++++|+..|++..+ ..| +...+..+...+...|++++|...|+++++. .|+ ...+..+...
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHH
Confidence 34477778899999999999999998 456 5678899999999999999999999999865 776 5788899998
Q ss_pred hhhcCCh--HHHHHHHHhCC-CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 701 LGRSGKL--QEAYEFIKNLP-IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 701 ~~~~g~~--~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
|...|+. +++...++... ..|....+.....++...|++++|+..+++++++.|++. ....|..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i 199 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 8776643 44555565552 222233444556667778999999999999999999743 33344443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-07 Score=86.07 Aligned_cols=153 Identities=8% Similarity=-0.048 Sum_probs=127.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC----cHHHHHHHHHHhHHHcCCCCCcchH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG----LVDEGLQYYNNMLEEYDVRPETEHH 694 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~~~~ 694 (781)
++.++..+...|...+++++|+++|++..+.| +...+..|...|.. + +.++|.++|++..+. -++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 34467778888888999999999999999865 56677778888877 6 999999999998643 245778
Q ss_pred HHHHHHhhh----cCChHHHHHHHHhC-CCCCC---cchHHHHHHHHHh----cCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 695 VCIVDMLGR----SGKLQEAYEFIKNL-PIQPK---PGVWGAMLSACSH----HGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 695 ~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
..|...|.. .+++++|++++++. ...|. +..+..+...+.. .+++++|..+++++.++ |+++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 889988887 88999999999987 34443 6788888888888 78999999999999998 778889999
Q ss_pred HHHHHHhc-C-----ChhhHHhhc
Q 035828 763 LSNMYVAL-G-----RWKDAVEIG 780 (781)
Q Consensus 763 l~~~~~~~-g-----~~~~A~~l~ 780 (781)
|+.+|... | +.++|++.+
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~ 191 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWL 191 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHH
Confidence 99999864 3 899998765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=92.04 Aligned_cols=168 Identities=10% Similarity=0.099 Sum_probs=110.7
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHHh-----CC-CCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHH
Q 035828 570 ISIVSILSACTQLGVLRHGKQIHGHVFHL-----GF-QENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELF 643 (781)
Q Consensus 570 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 643 (781)
.++..+...+...|++++|...++...+. +. .|. ...+|..+...+...|++++|++.+
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~ 150 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD---------------VAKQLNNLALLCQNQGKAEEVEYYY 150 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH---------------HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35556666667777777777777666543 11 121 1226788888999999999999999
Q ss_pred HHHHhC------CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHc------CCCCC-cchHHHHHHHhhhcC----
Q 035828 644 HEMCNS------GIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEY------DVRPE-TEHHVCIVDMLGRSG---- 705 (781)
Q Consensus 644 ~~m~~~------g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g---- 705 (781)
++..+. +-.| ...++..+...+...|++++|.++++++++.. ...+. ...+..+...+...+
T Consensus 151 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (283)
T 3edt_B 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRD 230 (283)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhH
Confidence 998874 1134 34578889999999999999999999987641 12333 345555554444433
Q ss_pred --ChHHHHHHHHhCC-CCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 706 --KLQEAYEFIKNLP-IQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 706 --~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
.+.++...++... ..| ....+..+...+...|++++|...++++++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 231 SAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444555543 223 3446888899999999999999999998875
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-08 Score=83.26 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=97.8
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchH
Q 035828 651 IRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVW 726 (781)
Q Consensus 651 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 726 (781)
+.|+. ..+......+.+.|++++|.+.|++.++. .|+ ...|..+..+|.+.|++++|++.++++ ...| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 55643 46777888999999999999999999865 665 688999999999999999999999887 4445 45678
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMY 767 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 767 (781)
..+..++...|++++|+..++++++++|+++.++..|+.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 89999999999999999999999999999999999888753
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.78 E-value=9e-09 Score=88.27 Aligned_cols=104 Identities=9% Similarity=0.010 Sum_probs=71.6
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchH
Q 035828 651 IRPTK-SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVW 726 (781)
Q Consensus 651 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 726 (781)
+.|+. ..+..+...+...|++++|...|+++++. .|+ +..|..+..+|.+.|++++|++.++++ ...| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 44533 35666666777777777777777777654 554 466777777777777777777777766 3344 45567
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
..+..++...|++++|+..+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 7777777777777777777777777777654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-08 Score=110.50 Aligned_cols=146 Identities=10% Similarity=-0.006 Sum_probs=128.0
Q ss_pred HhcCChHHHHHHHHHHHh------CCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhh
Q 035828 631 GYHGKGWEAIELFHEMCN------SGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLG 702 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~------~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 702 (781)
...|++++|++.+++..+ ....| +...+..+..++...|++++|.+.++++++. .|+ ...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHHHHH
Confidence 678999999999999981 01344 4567888889999999999999999999865 665 578999999999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 703 RSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..|++++|++.|+++ ...| +...+..+...+...|++++ +..++++++++|+++.++..++.+|.+.|++++|++.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999987 4555 56678899999999999999 99999999999999999999999999999999998865
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-08 Score=107.81 Aligned_cols=141 Identities=16% Similarity=0.087 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHH
Q 035828 634 GKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAY 711 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 711 (781)
|++++|++.+++..+ ..| +...+..+...+...|++++|.+.+++.++ ..|+ ...+..+..+|...|++++|+
T Consensus 3 g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455555555555554 233 234555555555555666666666655542 2443 345555555566666666666
Q ss_pred HHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc---CChhhHHhh
Q 035828 712 EFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL---GRWKDAVEI 779 (781)
Q Consensus 712 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~l 779 (781)
+.++++ ...| +...+..+...+...|++++|.+.++++.+++|+++..+..++.+|... |++++|.+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 555554 2223 2334555555555566666666666666666666666666666666665 555555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-08 Score=83.43 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=85.3
Q ss_pred CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 686 DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 686 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
.+.|+ ...+...+..|.+.|++++|++.++++ ...| +...|..+..++.+.|++++|+..++++++++|+++.++..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35676 477888999999999999999999987 4445 56688899999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHhhc
Q 035828 763 LSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 763 l~~~~~~~g~~~~A~~l~ 780 (781)
+|.+|...|++++|++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~ 104 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAY 104 (126)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 999999999999999865
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-07 Score=90.08 Aligned_cols=157 Identities=6% Similarity=-0.056 Sum_probs=119.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchH
Q 035828 624 SSMISAYGYHGKGWEAIELFHEMCNSG-IRPTKS----SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHH 694 (781)
Q Consensus 624 ~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~ 694 (781)
...+..+...|++++|.+++++..+.. ..|+.. .+..+...+...|++++|...++++++...-.++ ..+|
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 334667889999999999999998742 223321 3334666677788999999999999874222233 2368
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCC-----C---CCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC------Cch
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNLP-----I---QPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN------VGY 759 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~ 759 (781)
..++..|...|++++|++.++++- . .+. ..++..++..+.+.|++++|...+++++++.++. +..
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 999999999999999999987761 1 111 2367889999999999999999999999876433 568
Q ss_pred HHHHHHHHHhcCC-hhhHHhhc
Q 035828 760 YISLSNMYVALGR-WKDAVEIG 780 (781)
Q Consensus 760 ~~~l~~~~~~~g~-~~~A~~l~ 780 (781)
+..+|.+|.+.|+ +++|++.+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHH
Confidence 9999999999995 59998754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-08 Score=87.40 Aligned_cols=123 Identities=9% Similarity=-0.017 Sum_probs=97.4
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-
Q 035828 641 ELFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL- 717 (781)
Q Consensus 641 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 717 (781)
..|+++.. +.|+ ...+..+...+...|++++|...|++.++. .|+ ...|..+..+|...|++++|++.++++
T Consensus 8 ~~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 8 GTIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp CSHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555554 4553 446777888889999999999999998865 665 578888999999999999999999887
Q ss_pred CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 718 PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 718 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
...| ++..+..+..++...|++++|...+++++++.|+++........+..
T Consensus 83 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 134 (148)
T 2vgx_A 83 VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134 (148)
T ss_dssp HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHH
Confidence 3444 55678888888999999999999999999999998877655555443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-07 Score=102.39 Aligned_cols=138 Identities=14% Similarity=0.067 Sum_probs=104.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.|..+...+...|++++|++.+++..+ ..| +...+..+..++...|++++|.+.+++.++. .|+ ...+..+..
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~ 99 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA---APEHPGIALWLGH 99 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHH
Confidence 566677777788888888888888877 344 4567777888888888888888888888765 555 467788888
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc---CCcHHHHHHHHHHhccCCCCCchHHHHH
Q 035828 700 MLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHH---GDTKMGKQVAELLFKLEPENVGYYISLS 764 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 764 (781)
+|.+.|++++|++.++++ ...| +...+..+...+... |+.++|.+.++++++.+|++...+..++
T Consensus 100 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 100 ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 888888888888888776 3344 445677777777778 8888888888888888888777766555
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=6.4e-07 Score=82.86 Aligned_cols=140 Identities=9% Similarity=-0.039 Sum_probs=116.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 700 (781)
.+..+...+...|++++|++.|++.. .|+...+..+...+...|++++|.+.+++.++. .|+ ...+..+..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHH
Confidence 35556777889999999999999874 678889999999999999999999999999866 555 5789999999
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-Cc----------------chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 701 LGRSGKLQEAYEFIKNL-PIQP-KP----------------GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~~~p-~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
|...|++++|++.++++ ...| +. ..+..+...+...|++++|...++++.+..|++......
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 160 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID 160 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHH
Confidence 99999999999999876 2233 22 578888889999999999999999999999987655544
Q ss_pred HHHHHH
Q 035828 763 LSNMYV 768 (781)
Q Consensus 763 l~~~~~ 768 (781)
.+....
T Consensus 161 ~a~~~~ 166 (213)
T 1hh8_A 161 KAMECV 166 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.67 E-value=3e-07 Score=89.97 Aligned_cols=157 Identities=6% Similarity=-0.071 Sum_probs=119.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cc
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT-K----SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TE 692 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 692 (781)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+++.++...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 455567778899999999999998887432211 1 12344556667889999999999998754221122 34
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC----CCCCC-----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC------CC
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL----PIQPK-----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE------NV 757 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 757 (781)
+|..++..|...|++++|++.++++ ...|+ ..++..++..+...|++++|...++++.++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999998776 12222 247888999999999999999999999987532 25
Q ss_pred chHHHHHHHHHhcCChhhH-Hh
Q 035828 758 GYYISLSNMYVALGRWKDA-VE 778 (781)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A-~~ 778 (781)
..+..+|.+|.+.|++++| .+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~ 258 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHH
Confidence 6789999999999999999 54
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.66 E-value=6.1e-07 Score=83.74 Aligned_cols=131 Identities=10% Similarity=0.081 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHh------------------cccCcHHHHHHHHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS----SVISLLSAC------------------SHSGLVDEGLQYYNN 680 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~------------------~~~~~~~~a~~~~~~ 680 (781)
+..+..++...|++++|+..|++..+. .|+.. .+..+..++ ...|++++|...|++
T Consensus 44 ~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 44 QLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 444455555666666666666665552 23221 222222222 235788888888888
Q ss_pred hHHHcCCCCCc-chH-----------------HHHHHHhhhcCChHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcC
Q 035828 681 MLEEYDVRPET-EHH-----------------VCIVDMLGRSGKLQEAYEFIKNL-PIQPKP----GVWGAMLSACSHHG 737 (781)
Q Consensus 681 ~~~~~~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g 737 (781)
+++. .|+. ..+ ..++..|.+.|++++|+..++++ ...|+. ..+..++.++.+.|
T Consensus 122 ~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 198 (225)
T 2yhc_A 122 LVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQ 198 (225)
T ss_dssp HHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcC
Confidence 8754 5553 222 35677889999999999999887 344443 46788888999999
Q ss_pred CcHHHHHHHHHHhccCCCCCc
Q 035828 738 DTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~~~ 758 (781)
+.++|...++.+....|++..
T Consensus 199 ~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 199 MNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp CHHHHHHHHHHHHHCCSCCCC
T ss_pred CcHHHHHHHHHHHhhCCCchh
Confidence 999999999999998888654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=87.88 Aligned_cols=119 Identities=12% Similarity=-0.008 Sum_probs=104.2
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACS 734 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 734 (781)
.+..+...+...|++++|...+++.. .|+...+..++..|.+.|++++|++.+++. ...| +...+..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34556667888999999999998873 667789999999999999999999999887 3334 5567888999999
Q ss_pred hcCCcHHHHHHHHHHhccCCCCC----------------chHHHHHHHHHhcCChhhHHhhc
Q 035828 735 HHGDTKMGKQVAELLFKLEPENV----------------GYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..|++++|...++++.+..|+++ ..+..++.+|.+.|++++|++.+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999999999999999888 89999999999999999998865
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-07 Score=79.74 Aligned_cols=116 Identities=11% Similarity=0.036 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHH
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAML 730 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 730 (781)
+...+..+...+...|++++|...+++.++ ..|+ ...+..++..+...|++++|++.++++ ...| +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 445777778888888888888888888764 3554 577888888888899999998888876 3334 456788888
Q ss_pred HHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 731 SACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
..+...|++++|...++++.+..|+++..+..++.+|...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999999999999998875
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.65 E-value=3e-08 Score=97.77 Aligned_cols=156 Identities=8% Similarity=-0.036 Sum_probs=119.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCC--CC--cchH
Q 035828 624 SSMISAYGYHGKGWEAIELFHEMCNS----GIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVR--PE--TEHH 694 (781)
Q Consensus 624 ~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--p~--~~~~ 694 (781)
+.....|...|++++|++.|.+..+. |-.+. ..+|..+...|...|++++|...+++.++.+.-. |. ..++
T Consensus 40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 119 (307)
T 2ifu_A 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33445567789999999988887652 11111 3478888889999999999999999987653211 21 3678
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-------CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC------chH
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL-PIQP-------KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV------GYY 760 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~ 760 (781)
..+...|.. |++++|++.+++. ...| ...++..+...+...|++++|+..++++.++.|++. ..+
T Consensus 120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 889999988 9999999998876 2111 135678888999999999999999999999876554 367
Q ss_pred HHHHHHHHhcCChhhHHhhc
Q 035828 761 ISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~l~ 780 (781)
..++.+|...|++++|++.+
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 78888999999999998765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=92.53 Aligned_cols=126 Identities=10% Similarity=0.061 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchHHHH
Q 035828 652 RPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVWGAM 729 (781)
Q Consensus 652 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 729 (781)
+.+...+..+...+...|++++|...++++++. .|+ ...+..+...+.+.|++++|++.++++ ...|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 334557777888889999999999999999876 776 578999999999999999999999998 456654433333
Q ss_pred HH-HHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 730 LS-ACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 730 ~~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.. .+...|+.+.|...++++.+.+|+++..+..|+.+|...|++++|++.+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l 242 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL 242 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 32 3567888999999999999999999999999999999999999999865
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-07 Score=77.85 Aligned_cols=114 Identities=22% Similarity=0.313 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCcchHHHHHH
Q 035828 655 KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI-QPKPGVWGAMLS 731 (781)
Q Consensus 655 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~ 731 (781)
...+..+...+...|++++|.+.++++.+. .|+ ...+..++..+.+.|++++|+..++++ .. +.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 356677777778888888888888888765 343 567778888888888888888888776 22 335567788888
Q ss_pred HHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 035828 732 ACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG 771 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 771 (781)
.+...|++++|...++++.+..|+++..+..++.++.+.|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999988765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-07 Score=78.42 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHH
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAML 730 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 730 (781)
+...+..+...+...|++++|...+++..+. .|+ ...+..++..+...|++++|++.+++. ...| +...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 3456777777888888888888888888765 443 577888888888999999999888776 3334 456788888
Q ss_pred HHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 731 SACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
..+...|++++|...++++.+..|+++..+..++.++.+.|+++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999998863
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-07 Score=82.41 Aligned_cols=119 Identities=9% Similarity=0.018 Sum_probs=64.1
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 035828 658 VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACS 734 (781)
Q Consensus 658 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 734 (781)
+..+...+...|++++|...+++.++. .|+ ...+..++.++...|++++|++.+++. ...| +...+..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444444555555555555555555443 332 345555555555556666665555544 2222 3344555555556
Q ss_pred hcCCcHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCChhhHHhh
Q 035828 735 HHGDTKMGKQVAELLFKLEPENVGYYISLSNM--YVALGRWKDAVEI 779 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~l 779 (781)
..|++++|...++++.+..|+++..+..++.+ +...|++++|++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 139 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 139 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66666666666666666666666555333333 5556666666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-07 Score=85.68 Aligned_cols=151 Identities=12% Similarity=0.050 Sum_probs=115.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHH----------------HHHHhcccCcHHHHHHHHHHhHHHcC
Q 035828 624 SSMISAYGYHGKGWEAIELFHEMCNSGIRPTK-SSVIS----------------LLSACSHSGLVDEGLQYYNNMLEEYD 686 (781)
Q Consensus 624 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~ 686 (781)
-.....+...|++++|+..|++..+ ..|+. ..|.. +..++...|++++|...+++.++.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 3344556789999999999999988 56653 45666 888899999999999999999866
Q ss_pred CCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCC--cHHHHHHHHHHhccCCCCCchHH
Q 035828 687 VRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGD--TKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 687 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
.|+ ...+..+..+|...|++++|++.++++ ...| +...+..+...+...|+ .+.+...++++....|. ...+.
T Consensus 84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 676 588999999999999999999999987 4555 45578888877766553 45566666666433322 23567
Q ss_pred HHHHHHHhcCChhhHHhhc
Q 035828 762 SLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 762 ~l~~~~~~~g~~~~A~~l~ 780 (781)
.++..+...|++++|++.+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~ 180 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSL 180 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHH
Confidence 7899999999999998754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-07 Score=82.19 Aligned_cols=123 Identities=13% Similarity=0.007 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSA-CSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM 700 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 700 (781)
|..+...+...|++++|+..+++... ..|+...+..+... +...++..+|...+++.++. .|+ ...+..+...
T Consensus 43 ~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~ 117 (176)
T 2r5s_A 43 KLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAA---NPDNFELACELAVQ 117 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 44444455555555555555555544 22222222111111 11111222356666666543 554 4566667777
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC---cchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 701 LGRSGKLQEAYEFIKNL-PIQPK---PGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
+...|++++|++.++++ ...|+ ...+..+...+...|+.++|...+++++
T Consensus 118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 77777777777766655 44443 3356666666667777777777776654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-06 Score=83.05 Aligned_cols=224 Identities=9% Similarity=0.031 Sum_probs=153.0
Q ss_pred ChHHHHHHhhhcC---CCChhhHHHHHHHHHhCC--ChhHHHHHHhhc-CCCCCHh-HHHHHHHHh----ccc---CchH
Q 035828 521 DIKSASTVFESCY---NCNLCTWNCMISAFSQNK--AEVRALELFRHL-EFEPNEI-SIVSILSAC----TQL---GVLR 586 (781)
Q Consensus 521 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~----~~~---~~~~ 586 (781)
..++|+..++.+. +.+..+|+.--..+...| ++++++.+++.+ ...|... .++.--..+ ... ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3356777777665 233457777777777777 888888888888 5666433 222211111 222 6778
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGW--EAIELFHEMCNSGIRPTKSSVISLLSA 664 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~l~~~ 664 (781)
++..+++.+.+... .+-.+|+--.-.+...|+++ ++++.++++.+.. .-|...|+.-...
T Consensus 128 ~EL~~~~~~l~~~p-----------------kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~l 189 (306)
T 3dra_A 128 REFDILEAMLSSDP-----------------KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 88888888877543 25667777777777778887 8888888888743 2255667666666
Q ss_pred hcccCc------HHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHH-HHHHHHhC-CC----CCCcchHHHHHH
Q 035828 665 CSHSGL------VDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQE-AYEFIKNL-PI----QPKPGVWGAMLS 731 (781)
Q Consensus 665 ~~~~~~------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~ 731 (781)
+...++ ++++++.+++++.. .|+ ...|..+...+.+.|+..+ +.++..+. .. ..++..+..++.
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 666665 78888888888765 665 4677777777777777544 45566665 21 235567778888
Q ss_pred HHHhcCCcHHHHHHHHHHhc-cCCCCCchHHHHHH
Q 035828 732 ACSHHGDTKMGKQVAELLFK-LEPENVGYYISLSN 765 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~ 765 (781)
.+.+.|+.++|.+.++.+.+ .+|-....+...+.
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 88888888899999988886 68888877776654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=9.7e-08 Score=82.03 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.+..+...+...|++++|+..|++... ..| +...|..+..++...|++++|...++++++. .|+ +..+..+..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHHHHH
Confidence 344444455555555555555555544 223 3334444555555555555555555555433 333 344555555
Q ss_pred HhhhcCChHHHHHHHHhC
Q 035828 700 MLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~ 717 (781)
+|...|++++|++.+++.
T Consensus 98 ~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 555555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.57 E-value=5.3e-05 Score=79.39 Aligned_cols=125 Identities=14% Similarity=0.033 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc-ccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACS-HSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVD 699 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 699 (781)
..|-..+..+.+.++.+.|..+|++.... .++...|......-. ..++.+.|..+|+..++.++-. +..+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHHHH
Confidence 35777777777788899999999999321 223444433222212 2347999999999998874322 345666778
Q ss_pred HhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 700 MLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
...+.|+.++|..+++++. .....|...+.--...|+.+.+..++++..+
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999983 3456788888877889999999999888874
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=8.4e-08 Score=81.98 Aligned_cols=126 Identities=8% Similarity=-0.065 Sum_probs=96.5
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-C
Q 035828 642 LFHEMCNSGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-P 718 (781)
Q Consensus 642 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 718 (781)
.|++... +.|+ ...+..+...+...|++++|...|+++++. .|+ ...|..+..+|.+.|++++|++.++++ .
T Consensus 6 ~l~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 6 TLAMLRG--LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp ---CCTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444443 4453 346666777888899999999999998865 665 578888999999999999999999887 3
Q ss_pred CCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 719 IQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 719 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
..| ++..+..+..++...|++++|...++++.++.|+++........+....+.
T Consensus 81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 444 456778888889999999999999999999999988887766665544433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-07 Score=92.86 Aligned_cols=139 Identities=12% Similarity=0.004 Sum_probs=104.0
Q ss_pred CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc----------------chHHH
Q 035828 634 GKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET----------------EHHVC 696 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----------------~~~~~ 696 (781)
+++++|++.++...+ ..| +...+..+...+...|++++|...|++.++. .|+. ..|..
T Consensus 127 ~~~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 127 KSFEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHH
Confidence 344444444443332 233 2346666777777777788888777777655 4442 67888
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
+..+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|+++.++..++.++...|+++
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 888999999999999888876 3444 55678888888889999999999999999999999999999999999999988
Q ss_pred hHH
Q 035828 775 DAV 777 (781)
Q Consensus 775 ~A~ 777 (781)
+|.
T Consensus 282 ~a~ 284 (336)
T 1p5q_A 282 ARE 284 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=79.86 Aligned_cols=95 Identities=11% Similarity=0.028 Sum_probs=76.4
Q ss_pred CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 686 DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 686 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
.+.|+ ...+..+...+.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..++++.+++|+++.+++.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 55665 467778888888888888888888876 3445 45677888888888888888888888888888888888888
Q ss_pred HHHHHHhcCChhhHHhhc
Q 035828 763 LSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 763 l~~~~~~~g~~~~A~~l~ 780 (781)
+|.+|.+.|++++|++.+
T Consensus 110 lg~~~~~lg~~~eA~~~~ 127 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECF 127 (151)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 888888888888888754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-07 Score=85.16 Aligned_cols=132 Identities=8% Similarity=0.061 Sum_probs=104.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH-hhhcCCh
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM-LGRSGKL 707 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~ 707 (781)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++++++. .|+ ...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 566789999999999988742 336678889999999999999999999999865 454 5778888888 7789998
Q ss_pred --HHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 708 --QEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 708 --~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
++|++.++++ ...| +...+..+...+...|++++|...++++.+..|+++.....+..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 9999999887 4445 45678888888999999999999999999999998876655443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-05 Score=77.77 Aligned_cols=127 Identities=6% Similarity=-0.045 Sum_probs=82.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCC----CC-cchHH
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIR-PT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVR----PE-TEHHV 695 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----p~-~~~~~ 695 (781)
+...+...+++++|+..+++..+.... ++ ..+++.+...|...|++++|..+++++++...-. |. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 444455666777777777777663221 22 2257777777777788888888887776432111 11 34677
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-------CCCCC-cchHHHHHHHHHhcCC-cHHHHHHHHHHhcc
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-------PIQPK-PGVWGAMLSACSHHGD-TKMGKQVAELLFKL 752 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 752 (781)
.++..|.+.|++++|++.++++ +..+. ...+..+...+.+.|+ +++|...++++.++
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 7888888888888888777655 11111 4467777777778884 58888888887764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-06 Score=83.73 Aligned_cols=127 Identities=7% Similarity=-0.002 Sum_probs=79.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-----cchHH
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSG---IRPT--KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-----TEHHV 695 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~ 695 (781)
+...+...|++++|++.+++..+.. ..+. ..+++.+...|...|++++|...++++++.....|+ ..+|.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 4444566677777777777766421 1111 236677777777777777777777777632222232 14677
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-------CcchHHHHHHHHHhcCCcHHH-HHHHHHHhcc
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP-------KPGVWGAMLSACSHHGDTKMG-KQVAELLFKL 752 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 752 (781)
.++..|.+.|++++|++.+++. ...+ -...+..+...+.+.|++++| ...++++..+
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7777777888888887777654 1111 134566677777777888888 6667776654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-07 Score=86.77 Aligned_cols=117 Identities=9% Similarity=-0.051 Sum_probs=73.5
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCC----cchHHHHHHHHHhc
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPK----PGVWGAMLSACSHH 736 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~ 736 (781)
+...+...|++++|.+.|+.+.. ..|+......+...+.+.|+|++|+..|++....|+ ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 44556667777777777776643 244422455555666777777777777765533332 22455666667777
Q ss_pred CCcHHHHHHHHHHhccC--CC-CCchHHHHHHHHHhcCChhhHHhhc
Q 035828 737 GDTKMGKQVAELLFKLE--PE-NVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|++++|+..|+++.... |. .+.+.+.++.++.++|+.++|.+++
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l 231 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL 231 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777776432 33 4446677777777777777777654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.4e-07 Score=85.21 Aligned_cols=138 Identities=9% Similarity=-0.048 Sum_probs=107.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDM 700 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 700 (781)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566788899999999999999874 465555566666788899999999999866421 1 121 2478889999
Q ss_pred hhhcCChHHHHHHHHhCC--CC-CC--cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 701 LGRSGKLQEAYEFIKNLP--IQ-PK--PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~~--~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
+.+.|++++|++.+++.. .. |. ...+.....++.+.|+.++|...++++...+|+ +.+...|..
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 999999999999999872 21 43 235667777888999999999999999999999 777766654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.45 E-value=3.9e-07 Score=88.24 Aligned_cols=60 Identities=8% Similarity=-0.020 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLE 683 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 683 (781)
.|..+...|...|++++|+..+++..+ +.| +...+..+..++...|++++|...+++.++
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 40 YYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555555554 233 334555555555555666666665555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=71.10 Aligned_cols=111 Identities=19% Similarity=0.139 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHH
Q 035828 655 KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLS 731 (781)
Q Consensus 655 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 731 (781)
...+..+...+...|++++|...+++..+. .|+ ...+..++..+...|++++|.+.+++. ...| +...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666667777788888888888887755 443 567777888888888888888887766 3334 4556778888
Q ss_pred HHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 732 ACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
.+...|++++|...++++.+..|+++..+..++.+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 8888999999999999999999999988888877653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.4e-07 Score=76.23 Aligned_cols=83 Identities=11% Similarity=0.069 Sum_probs=39.0
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRW 773 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 773 (781)
.+...+.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|++
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3444444445555554444443 2222 2334444444444445555555555555555555555555555555555555
Q ss_pred hhHHh
Q 035828 774 KDAVE 778 (781)
Q Consensus 774 ~~A~~ 778 (781)
++|++
T Consensus 102 ~~A~~ 106 (121)
T 1hxi_A 102 NAALA 106 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=8.2e-07 Score=75.72 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
...+..+...+...|++++|+..|++... ..| +...|..+..++...|++++|...+++.++. .|+ +..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 92 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---DINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHH
Confidence 33445555556666666666666666655 233 3445555556666666666666666666543 343 4555566
Q ss_pred HHHhhhcCChHHHHHHHHhC
Q 035828 698 VDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~ 717 (781)
..+|...|++++|++.+++.
T Consensus 93 g~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-07 Score=86.61 Aligned_cols=148 Identities=9% Similarity=-0.010 Sum_probs=108.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--------------cchH
Q 035828 629 AYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--------------TEHH 694 (781)
Q Consensus 629 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--------------~~~~ 694 (781)
.....|+++++.+.|+.-.+. .......+..+...+...|++++|...|++.++.....|+ ...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 344557777776666543321 1112346777778888899999999999998764222221 1678
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
..+..+|.+.|++++|++.++++ ...| +...+..+..++...|++++|...+++++++.|+++.++..++.++...|+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 88999999999999999999877 3344 556788888999999999999999999999999999999999999999888
Q ss_pred hhhHH
Q 035828 773 WKDAV 777 (781)
Q Consensus 773 ~~~A~ 777 (781)
.+++.
T Consensus 172 ~~~~~ 176 (198)
T 2fbn_A 172 ARKKD 176 (198)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 87765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-06 Score=78.44 Aligned_cols=113 Identities=8% Similarity=0.154 Sum_probs=75.7
Q ss_pred hcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHH-HHhcCCc-
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSA-CSHHGDT- 739 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~- 739 (781)
+...|++++|...+++.++. .|+ ...+..+...|...|++++|++.++++ ...| +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 34567777777777777654 443 467777777777777777777777765 2333 44456666666 5567777
Q ss_pred -HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 740 -KMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 740 -~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++|...++++++.+|+++..+..++.+|...|++++|++.+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 138 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHH
Confidence 77777777777777777777777777777778777777654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.3e-07 Score=75.10 Aligned_cols=112 Identities=8% Similarity=-0.067 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHH
Q 035828 655 KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLS 731 (781)
Q Consensus 655 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 731 (781)
...+..+...+...|++++|...|++.++. .|+ ...|..+..+|.+.|++++|++.++++ ...| +...+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 356777888889999999999999998865 565 588899999999999999999998877 4445 4557888888
Q ss_pred HHHhcCCcHHHHHHHHHHhccC------CCCCchHHHHHHHHHh
Q 035828 732 ACSHHGDTKMGKQVAELLFKLE------PENVGYYISLSNMYVA 769 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 769 (781)
++...|++++|...++++++++ |+++.+...+..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 8999999999999999999999 8888888888776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-06 Score=79.46 Aligned_cols=149 Identities=9% Similarity=-0.037 Sum_probs=108.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcC---CCCC-cchHHHHHHHhhhcCC
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYD---VRPE-TEHHVCIVDMLGRSGK 706 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~ 706 (781)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.++... ..|. ...+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4568999999965555431 123456888888889999999999999999876422 2222 4678889999999999
Q ss_pred hHHHHHHHHhC-C---CCC-C----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCC--CCC----chHHHHHHHHHhcC
Q 035828 707 LQEAYEFIKNL-P---IQP-K----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEP--ENV----GYYISLSNMYVALG 771 (781)
Q Consensus 707 ~~~A~~~~~~~-~---~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g 771 (781)
+++|.+.+++. . ..+ + ...+..+...+...|++++|...++++.+..+ +++ ..+..++.+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999988765 1 122 2 33577788888899999999999999987642 222 23578999999999
Q ss_pred ChhhHHhhc
Q 035828 772 RWKDAVEIG 780 (781)
Q Consensus 772 ~~~~A~~l~ 780 (781)
++++|.+.+
T Consensus 162 ~~~~A~~~~ 170 (203)
T 3gw4_A 162 NLLEAQQHW 170 (203)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999998764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-06 Score=76.39 Aligned_cols=109 Identities=16% Similarity=0.057 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHH
Q 035828 655 KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLS 731 (781)
Q Consensus 655 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 731 (781)
...+..+...+...|++++|.+.|++.++. .|+ ...|..+..+|.+.|++++|++.++++ ...| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345666666777777777777777777654 454 467777777777788888887777765 3344 3556777777
Q ss_pred HHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 732 ACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
.+...|++++|...++++++++|+++..+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 77788888888888888888888888765555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.2e-06 Score=73.57 Aligned_cols=114 Identities=12% Similarity=-0.017 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHH
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWG 727 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 727 (781)
+...+..+...+...|++++|.+.+++.++ ..|+ ...+..+...|...|++++|++.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 456777777888888888888888888863 4666 567888888888999999999888776 3344 455778
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 728 AMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
.+...+...|++++|...++++.+++|+++..+..+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 8888889999999999999999999999999988888876554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.1e-05 Score=72.15 Aligned_cols=189 Identities=12% Similarity=0.098 Sum_probs=131.0
Q ss_pred ChHHHHHHhhhcC---CCChhhHHHHHHHH----HhC---CChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchH--
Q 035828 521 DIKSASTVFESCY---NCNLCTWNCMISAF----SQN---KAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLR-- 586 (781)
Q Consensus 521 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~-- 586 (781)
+++++++.++.+. ..+..+|+.--..+ ... +++++++.+++++ ...| +...++.---.+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~ 163 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA 163 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCH
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChH
Confidence 6666666666554 23334555444433 444 6788999999888 6555 5566666555566667777
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC------hHHHHHHHHHHHhCCCCC-CHHHHH
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK------GWEAIELFHEMCNSGIRP-TKSSVI 659 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~------~~~A~~~~~~m~~~g~~p-~~~~~~ 659 (781)
++.+.++.+++..+. |-.+|+--...+...++ ++++++.++++... .| |...|+
T Consensus 164 ~EL~~~~~~i~~d~~-----------------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~ 224 (306)
T 3dra_A 164 KELSFVDKVIDTDLK-----------------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWN 224 (306)
T ss_dssp HHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHH
T ss_pred HHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHH
Confidence 889999999887654 33368877777777776 89999999999884 45 667888
Q ss_pred HHHHHhcccCcH-HHHHHHHHHhHHHcCCCC-CcchHHHHHHHhhhcCChHHHHHHHHhCC--CCCCcc-hHHH
Q 035828 660 SLLSACSHSGLV-DEGLQYYNNMLEEYDVRP-ETEHHVCIVDMLGRSGKLQEAYEFIKNLP--IQPKPG-VWGA 728 (781)
Q Consensus 660 ~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~-~~~~ 728 (781)
.+...+.+.|+. +....+.+++.+.....| ++..+..+++.|.+.|+.++|++.++.+. ..|... .|+.
T Consensus 225 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 888777777764 445667777654311123 45788899999999999999999999883 566433 4443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-06 Score=72.32 Aligned_cols=93 Identities=13% Similarity=0.048 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
...|..+...+...|++++|+..|++..+. .| +...|..+..++...|++++|...+++.++. .|+ ...|..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHH
Confidence 345666677777777777787777777763 34 4566777777777777777777777777654 554 4667777
Q ss_pred HHHhhhcCChHHHHHHHHhC
Q 035828 698 VDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~ 717 (781)
..++...|++++|++.+++.
T Consensus 79 g~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHH
Confidence 77777777777777777665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.1e-06 Score=74.98 Aligned_cols=122 Identities=16% Similarity=0.055 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----c
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNS----GIRP--TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----T 691 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~ 691 (781)
++..+...+...|++++|++.+++..+. +-.| ....+..+...+...|++++|...+++.++......+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4666777788888888888888876652 1122 1235777777888889999999998887654211222 2
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 755 (781)
.++..+...+...|++++|.+.+++. +......|+......+...+....|.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRA------------RDIFAELEDSEAVNELMTRLNGLEHH 199 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHhcccchhhc
Confidence 34577888888888888888877664 23344555655555555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.34 E-value=9.5e-07 Score=71.54 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC---CcchHHHH
Q 035828 655 KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP---KPGVWGAM 729 (781)
Q Consensus 655 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l 729 (781)
...+..+...+...|++++|...+++.++. .|+ ...+..+...+...|++++|++.+++. ...| +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 345666666777777777777777777654 343 456677777777777777777777665 3333 34566667
Q ss_pred HHHHHhc-CCcHHHHHHHHHHhccCCCCC
Q 035828 730 LSACSHH-GDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 730 ~~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 757 (781)
...+... |++++|.+.++++.+..|+++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777777 777777777777777777654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.33 E-value=9.8e-07 Score=92.44 Aligned_cols=117 Identities=9% Similarity=0.015 Sum_probs=95.1
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG 737 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 737 (781)
+...+...|++++|.+.+++.++. .|+ ...|..+..+|.+.|++++|++.++++ ...| +...+..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334566778889999999888765 665 578888899999999999999988876 4455 4557888888899999
Q ss_pred CcHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCChhhHHhhc
Q 035828 738 DTKMGKQVAELLFKLEPENVGYYISLSNM--YVALGRWKDAVEIG 780 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~l~ 780 (781)
++++|++.++++.++.|+++.++..++.+ +.++|++++|++++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~ 133 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 133 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999988 88899999998865
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=74.51 Aligned_cols=120 Identities=7% Similarity=-0.109 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHH
Q 035828 653 PTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAM 729 (781)
Q Consensus 653 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 729 (781)
.+...+..+...+...|++++|...+++.++. .|+ ...+..+..++...|++++|+..++++ ...| +...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 46678888999999999999999999998865 565 578899999999999999999998877 3444 45678888
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCC-----CCchHHHHHHHHHhcCChhh
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPE-----NVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g~~~~ 775 (781)
...+...|++++|...+++++++.|+ +..+...+..+..+.+...+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999888 66677777766665544443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-06 Score=77.01 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=81.7
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
...+..+...+.+.|++++|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888999999999999999999987 4445 56688899999999999999999999999999999999999999999
Q ss_pred hcCChhhHHhhc
Q 035828 769 ALGRWKDAVEIG 780 (781)
Q Consensus 769 ~~g~~~~A~~l~ 780 (781)
..|++++|++.+
T Consensus 91 ~~g~~~~A~~~~ 102 (164)
T 3sz7_A 91 DMADYKGAKEAY 102 (164)
T ss_dssp HTTCHHHHHHHH
T ss_pred HccCHHHHHHHH
Confidence 999999999865
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-06 Score=72.76 Aligned_cols=94 Identities=12% Similarity=-0.023 Sum_probs=71.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHH
Q 035828 619 SNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVC 696 (781)
Q Consensus 619 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 696 (781)
++..|..+...+...|++++|+..|++.... .| +...+..+..++...|++++|...+++.++. .|+ ...+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 82 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAHFF 82 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHHHH
Confidence 4567777778888888888888888887763 34 4567777777778888888888888887755 454 467777
Q ss_pred HHHHhhhcCChHHHHHHHHhC
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~ 717 (781)
+..+|...|++++|++.++++
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 888888888888888877765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.5e-07 Score=73.73 Aligned_cols=88 Identities=9% Similarity=-0.006 Sum_probs=56.1
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc-------hHHHH
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG-------YYISL 763 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l 763 (781)
.+..++..+.+.|++++|++.++++ .+.| +...|..+..++...|++++|+..++++++++|+++. ++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3445666666666666666666654 3333 3445666666666777777777777777776665543 56667
Q ss_pred HHHHHhcCChhhHHhhc
Q 035828 764 SNMYVALGRWKDAVEIG 780 (781)
Q Consensus 764 ~~~~~~~g~~~~A~~l~ 780 (781)
|.+|...|++++|++.+
T Consensus 90 g~~~~~~~~~~~A~~~~ 106 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWF 106 (127)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 77777777877777654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-06 Score=72.62 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=90.4
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc----chHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHH
Q 035828 658 VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET----EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGA 728 (781)
Q Consensus 658 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ 728 (781)
+..+...+...|++++|...++++.+. .|+. ..+..+..++.+.|++++|++.++++ ...|+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 345667788899999999999999876 4543 47888999999999999999999886 33444 445778
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRW 773 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 773 (781)
+...+...|++++|...++++.+..|+++.....+..+-.-.++.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~~ 126 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLGQ 126 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhh
Confidence 888899999999999999999999999988877777665555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-06 Score=72.71 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=81.5
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
...+..++..+.+.|++++|++.+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 467888999999999999999999987 4555 56678888888999999999999999999999999999999999999
Q ss_pred hcCChhhHHhhc
Q 035828 769 ALGRWKDAVEIG 780 (781)
Q Consensus 769 ~~g~~~~A~~l~ 780 (781)
..|++++|++.+
T Consensus 96 ~~~~~~~A~~~~ 107 (133)
T 2lni_A 96 AMKDYTKAMDVY 107 (133)
T ss_dssp HTTCHHHHHHHH
T ss_pred HHhhHHHHHHHH
Confidence 999999999865
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=3e-06 Score=70.40 Aligned_cols=101 Identities=11% Similarity=0.029 Sum_probs=59.6
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC--------cchH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK--------PGVW 726 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--------~~~~ 726 (781)
.+..+...+.+.|++++|++.|++.++. .|+ ...|..+..+|.+.|++++|++.+++. .+.|+ ..++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4445555666666666666666666543 444 355666666666666666666665544 11221 1245
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHH
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
..+...+...|++++|++.++++++..|+ +....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 55666677778888888888887776664 44333
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.9e-05 Score=71.33 Aligned_cols=160 Identities=13% Similarity=0.030 Sum_probs=104.3
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCcc----chHHHHHHHHHHHHhcCCCChHH
Q 035828 433 SDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLE----LAFEGKSLHGLALKSLMGLDTRV 508 (781)
Q Consensus 433 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~ 508 (781)
.++..+..+-..|...+++++|+..|++..+.+ +...+..+-..+.. + +.++|...++...+.| +...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 455555555566666666666666666666543 33344444444444 4 6667777776665554 4556
Q ss_pred HHHHHHHHHh----cCChHHHHHHhhhcCCCC-----hhhHHHHHHHHHh----CCChhHHHHHHhhc-CCCCCHhHHHH
Q 035828 509 QNALITMYGR----CRDIKSASTVFESCYNCN-----LCTWNCMISAFSQ----NKAEVRALELFRHL-EFEPNEISIVS 574 (781)
Q Consensus 509 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~A~~~~~~~-~~~p~~~~~~~ 574 (781)
+..|...|.. .+++++|.+.|++....+ +..+..|...|.. .++.++|+..|++. ...++...+..
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~ 167 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYW 167 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 6666677766 778888888888777443 4677777778877 77888899888888 44334445555
Q ss_pred HHHHhcc------cCchHHHHHHHHHHHHhCC
Q 035828 575 ILSACTQ------LGVLRHGKQIHGHVFHLGF 600 (781)
Q Consensus 575 ll~~~~~------~~~~~~a~~~~~~~~~~~~ 600 (781)
|-..+.. ..+.+.|...++...+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 5555532 2388999999888877765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-06 Score=87.80 Aligned_cols=122 Identities=9% Similarity=-0.006 Sum_probs=82.6
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-------------cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-------------TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP- 721 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 721 (781)
.+..+...+.+.|++++|...|++.++.....+. ...|..+..+|.+.|++++|++.++++ ...|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4555555556666666666666666543111110 356777888888888888888887776 3334
Q ss_pred CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 722 KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
+...+..+..++...|++++|...++++++++|+++.++..++.++.+.|++++|.+
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888888888888888888888888888888888888888888777653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.25 E-value=8.2e-06 Score=68.00 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cch
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTK----SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEH 693 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~ 693 (781)
.+..+...+...|++++|++.|++..+. .|+. ..+..+..++...|++++|...++++++. .|+ ...
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~ 78 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGG 78 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHH
Confidence 4566778888999999999999999874 4443 37777888889999999999999999876 444 456
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG 724 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 724 (781)
+..+..++.+.|++++|++.++++ ...|+..
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 788889999999999999998876 3445544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0021 Score=67.17 Aligned_cols=83 Identities=5% Similarity=-0.042 Sum_probs=53.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccc-chhhhhhHHHHHHHh-cCCC-ChHHHHHHHHHHH----hcCC
Q 035828 256 GKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCADSL-LLREGRSVHGYAIRR-LLGY-DLLMMNSLMDFYS----KSNS 328 (781)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~----~~~~ 328 (781)
|+++.+..+|++... ..|+...|..-+....+.+ ..+.+..+|+..+.. |..+ +...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 677888888887776 3467777777776665555 345666777776654 4333 5567777666554 2356
Q ss_pred HHHHHHHHHhhCC
Q 035828 329 LSKAELLFNAIAP 341 (781)
Q Consensus 329 ~~~a~~~~~~~~~ 341 (781)
++.+..+|+....
T Consensus 105 ~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 105 IEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 7778888877755
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.7e-06 Score=70.78 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=80.1
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
...+..++..+...|++++|++.+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345778889999999999999999887 3344 56678888888999999999999999999999999999999999999
Q ss_pred hcCChhhHHhhc
Q 035828 769 ALGRWKDAVEIG 780 (781)
Q Consensus 769 ~~g~~~~A~~l~ 780 (781)
..|++++|.+.+
T Consensus 84 ~~~~~~~A~~~~ 95 (118)
T 1elw_A 84 FLNRFEEAKRTY 95 (118)
T ss_dssp HTTCHHHHHHHH
T ss_pred HHhhHHHHHHHH
Confidence 999999999865
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-06 Score=72.75 Aligned_cols=90 Identities=14% Similarity=0.010 Sum_probs=82.1
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 765 (781)
...+..+...+...|++++|++.+++. ...|+ ...+..+...+...|++++|...++++.+..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 467888899999999999999999987 56676 5678888888999999999999999999999999999999999
Q ss_pred HHHhcCChhhHHhhc
Q 035828 766 MYVALGRWKDAVEIG 780 (781)
Q Consensus 766 ~~~~~g~~~~A~~l~ 780 (781)
+|...|++++|++.+
T Consensus 108 ~~~~~~~~~~A~~~~ 122 (148)
T 2dba_A 108 ALEKLGRLDQAVLDL 122 (148)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 999999999999875
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2.8e-06 Score=70.26 Aligned_cols=90 Identities=21% Similarity=0.376 Sum_probs=80.3
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
...+..++..+...|++++|++.++++ ...| +...+..++..+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 467888999999999999999999887 3333 56678888999999999999999999999999999999999999999
Q ss_pred hcCChhhHHhhc
Q 035828 769 ALGRWKDAVEIG 780 (781)
Q Consensus 769 ~~g~~~~A~~l~ 780 (781)
..|++++|.+.+
T Consensus 89 ~~~~~~~A~~~~ 100 (125)
T 1na0_A 89 KQGDYDEAIEYY 100 (125)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhcCHHHHHHHH
Confidence 999999998865
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.22 E-value=5e-06 Score=80.41 Aligned_cols=154 Identities=8% Similarity=-0.040 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIV 698 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 698 (781)
..+..+...+...|++++|+..|++..+ ..| +...|..+..++...|++++|...+++.+ ...|+ ...+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCCHHHHHHHH
Confidence 4677788889999999999999999988 455 66788889999999999999999999987 45776 57889999
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCCCc------chHHH-------------------------HHHHHHhcCCcHHHHHHH
Q 035828 699 DMLGRSGKLQEAYEFIKNL-PIQPKP------GVWGA-------------------------MLSACSHHGDTKMGKQVA 746 (781)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~-~~~p~~------~~~~~-------------------------l~~~~~~~g~~~~A~~~~ 746 (781)
.+|...|++++|++.++++ ...|+. ..+.. .+..+ ..|++++|.+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL-IAAERERELEEC 158 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH-HHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999998765 222211 11111 11111 256778888888
Q ss_pred HHHhccCCCCCchHHHHHHHHHhc-CChhhHHhhc
Q 035828 747 ELLFKLEPENVGYYISLSNMYVAL-GRWKDAVEIG 780 (781)
Q Consensus 747 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~l~ 780 (781)
+++.+++|++......+..++.+. +++++|.+++
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f 193 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELF 193 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777777777777666 6677777654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=8.5e-06 Score=65.73 Aligned_cols=90 Identities=10% Similarity=0.094 Sum_probs=54.6
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC--CCchHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE--NVGYYISLSNM 766 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 766 (781)
...+..++..+.+.|++++|+..++++ ...| +...+..+...+...|++++|...++++.+..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 345555666666666666666666554 2222 3445555666666666666666666666666666 66666666666
Q ss_pred HHhc-CChhhHHhhc
Q 035828 767 YVAL-GRWKDAVEIG 780 (781)
Q Consensus 767 ~~~~-g~~~~A~~l~ 780 (781)
|.+. |++++|++.+
T Consensus 86 ~~~~~~~~~~A~~~~ 100 (112)
T 2kck_A 86 LRYIEGKEVEAEIAE 100 (112)
T ss_dssp HTTCSSCSHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 6666 6666666543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-05 Score=70.51 Aligned_cols=126 Identities=10% Similarity=-0.047 Sum_probs=102.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|.+.+++.++. .|+ ...+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 5777888889999999999999999874 44 5678888999999999999999999999866 555 578999999
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCC-cchHH--HHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 700 MLGRSGKLQEAYEFIKNL-PIQPK-PGVWG--AMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
++...|++++|.+.++++ ...|+ ...+. ..+..+...|++++|...+++....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999887 34443 33443 3334467789999999999887654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.19 E-value=3.9e-06 Score=84.49 Aligned_cols=122 Identities=11% Similarity=0.040 Sum_probs=95.6
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHHc-------------CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-
Q 035828 658 VISLLSACSHSGLVDEGLQYYNNMLEEY-------------DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP- 721 (781)
Q Consensus 658 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 721 (781)
+..+...+.+.|++++|.+.|++.++.. ...|. ...|..+..+|.+.|++++|++.++++ ...|
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 3444445555555555555555554310 12343 578889999999999999999999887 5556
Q ss_pred CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 722 KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+...+..+..++...|++++|...++++++++|+++.++..++.++...++.++|.+.
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999999999999999988754
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=4.8e-06 Score=68.36 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=66.9
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHH
Q 035828 658 VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACS 734 (781)
Q Consensus 658 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 734 (781)
+..+...+.+.|++++|...+++.++. .|+ ...|..+..++.+.|++++|+..++++ ...| +...+..+...+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444555667778888888888887755 554 567777788888888888888887766 4444 3456777777778
Q ss_pred hcCCcHHHHHHHHHHhccCCCCC
Q 035828 735 HHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
..|++++|...++++++++|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.15 E-value=4.2e-06 Score=69.95 Aligned_cols=111 Identities=9% Similarity=0.006 Sum_probs=71.2
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC----C----cchH
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP----K----PGVW 726 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~ 726 (781)
.+..+...+...|++++|...+++..+. .|+ ...+..++..+...|++++|...++++ ...| + ...+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4455555556666666666666666544 332 455666666666666666666666554 1111 1 4456
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG 771 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 771 (781)
..+...+...|++++|...++++.+..| ++.....++.++...+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 7777778888888888888888888877 5777777777665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-06 Score=69.25 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=72.8
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC------CchHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN------VGYYIS 762 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~ 762 (781)
...+..+...+.+.|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++ +..+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345667777888888888888888776 3334 45677888888889999999999999999999998 788899
Q ss_pred HHHHHHhcCChhhHHhhc
Q 035828 763 LSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 763 l~~~~~~~g~~~~A~~l~ 780 (781)
++.++...|+.++|++.+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 999999999988887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=80.51 Aligned_cols=126 Identities=10% Similarity=0.017 Sum_probs=107.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHhcccCcHHHHHHHHHHhHHHc
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT----------------KSSVISLLSACSHSGLVDEGLQYYNNMLEEY 685 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 685 (781)
.|..+...+...|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|...++++++.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 677888889999999999999999988 4454 378999999999999999999999999865
Q ss_pred CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHH-HHHHHHHhcc
Q 035828 686 DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMG-KQVAELLFKL 752 (781)
Q Consensus 686 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 752 (781)
.|+ ...|..+..+|...|++++|++.++++ ...| +...+..+...+...|+.++| ...++++++.
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 688999999999999999999999887 4555 455778888888889999998 5577777754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=7.5e-05 Score=72.68 Aligned_cols=164 Identities=10% Similarity=0.002 Sum_probs=76.0
Q ss_pred hHHHHHHhhhcC---CCChhhHHHHHHHHHhCC-ChhHHHHHHhhc-CCCCCH-hHHHHHHHHhccc-C-chHHHHHHHH
Q 035828 522 IKSASTVFESCY---NCNLCTWNCMISAFSQNK-AEVRALELFRHL-EFEPNE-ISIVSILSACTQL-G-VLRHGKQIHG 593 (781)
Q Consensus 522 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~-~-~~~~a~~~~~ 593 (781)
.++|+++++.+. ..+..+|+.--..+...| .+++++.+++.+ ...|.. ..++.--..+... + +++++.++++
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 345555555544 223345555555555555 366666666666 444532 2233222222222 2 3444444444
Q ss_pred HHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 035828 594 HVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGW--------EAIELFHEMCNSGIRPTKSSVISLLSAC 665 (781)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 665 (781)
.+.+... . +-.+|+--.-.+...+.++ ++++.++++.+.. .-|...|+.....+
T Consensus 150 k~L~~dp--k---------------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 150 GSLLPDP--K---------------NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHTSSCT--T---------------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHhCC--C---------------CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4443221 1 1224444444444444444 6666666666532 22444555555555
Q ss_pred cccCc-------HHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCC
Q 035828 666 SHSGL-------VDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGK 706 (781)
Q Consensus 666 ~~~~~-------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 706 (781)
.+.++ ++++++.+++++.. .|+ ...|..+-..+.+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 55443 45666666665543 444 3444444444444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.6e-06 Score=71.82 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhcc-------CCCCCchH----HHHHHHHHhcCChhhHHhhc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKL-------EPENVGYY----ISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~l~ 780 (781)
.|.....++.+.|++++|+..+++++++ +|+++.+| +.+|.++...|++++|++-+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y 125 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 125 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 6777777788888888888888888888 99999999 99999999999999998754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.3e-06 Score=82.57 Aligned_cols=133 Identities=11% Similarity=0.026 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHhcccCcHHHHHHHHHHh
Q 035828 620 NAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKS------------------SVISLLSACSHSGLVDEGLQYYNNM 681 (781)
Q Consensus 620 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~ 681 (781)
...|..+...+.+.|++++|+..|++... +.|+.. .|..+..++.+.|++++|...+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566777777788888888888888776 456543 4444444555555555555555555
Q ss_pred HHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc-hHHHHHHHH-HhcCCcHHHHHHHHHHhccCCCCC
Q 035828 682 LEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG-VWGAMLSAC-SHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 682 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
++. .|+ ...|..+..+|...|++++|++.++++ ...|+.. .+..+.... ...+..+.+...+.++++..|+++
T Consensus 257 l~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 257 LTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred HHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 433 333 344555555555555555555555544 2333222 222222221 123444455555555555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.5e-05 Score=64.99 Aligned_cols=115 Identities=11% Similarity=-0.007 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
..|..+...+...|++++|++.+++..... +.+...+..+...+...|++++|.+.+++..+. .|+ ...+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHHH
Confidence 367778888899999999999999998742 336678888999999999999999999999865 555 578899999
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCc
Q 035828 700 MLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDT 739 (781)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 739 (781)
.+.+.|++++|.+.+++. ...| +...+..+...+...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999886 3444 455677777777777765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.5e-05 Score=80.58 Aligned_cols=135 Identities=8% Similarity=-0.018 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccC--cHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcC-ChHHH
Q 035828 636 GWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSG--LVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSG-KLQEA 710 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A 710 (781)
++++++.++.+.+ ..| +..+|..-.-.+.+.+ +++++++.++++++. +|. ...|..-..++.+.| .++++
T Consensus 89 ~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~e 163 (567)
T 1dce_A 89 VKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEE 163 (567)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHH
Confidence 8899999999988 455 5557777777777888 779999999999876 665 577887777888888 89999
Q ss_pred HHHHHhC-CCCC-CcchHHHHHHHHHhc--------------CCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 035828 711 YEFIKNL-PIQP-KPGVWGAMLSACSHH--------------GDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWK 774 (781)
Q Consensus 711 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 774 (781)
++.++++ ...| +...|......+.+. +.++++.+.+++++..+|++..+|+.+++++.+.|+.+
T Consensus 164 l~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 9999887 5555 455677776666553 55799999999999999999999999999999998855
Q ss_pred h
Q 035828 775 D 775 (781)
Q Consensus 775 ~ 775 (781)
+
T Consensus 244 ~ 244 (567)
T 1dce_A 244 V 244 (567)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.10 E-value=1e-06 Score=72.16 Aligned_cols=109 Identities=10% Similarity=0.085 Sum_probs=83.6
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGK 743 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 743 (781)
..|++++|...|++.++...-.|+ ...+..+..+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468899999999998743000354 578889999999999999999999887 4445 4567888888899999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 744 QVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 744 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
..++++++..|+++........+....+.+++
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887766666666665554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.7e-06 Score=70.79 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=67.4
Q ss_pred hcCChHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChH
Q 035828 632 YHGKGWEAIELFHEMCNSGI-RP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQ 708 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 708 (781)
..|++++|+..|++..+.+. .| +...+..+..++...|++++|...+++.++. .|+ ...+..+..++.+.|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHH
Confidence 46889999999999988431 23 3457888888999999999999999999866 665 578888999999999999
Q ss_pred HHHHHHHhC-CCCCCc
Q 035828 709 EAYEFIKNL-PIQPKP 723 (781)
Q Consensus 709 ~A~~~~~~~-~~~p~~ 723 (781)
+|++.+++. ...|+.
T Consensus 79 ~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 79 QGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCCc
Confidence 999988876 333443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=3e-06 Score=74.15 Aligned_cols=83 Identities=11% Similarity=-0.049 Sum_probs=64.8
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC-chHHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV-GYYISLSNMY 767 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 767 (781)
...|..+..+|.+.|++++|+..++++ ...| +...+..+..++...|++++|...++++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 357888888888999999998888776 4444 455788888888899999999999999999999988 5666676665
Q ss_pred HhcCCh
Q 035828 768 VALGRW 773 (781)
Q Consensus 768 ~~~g~~ 773 (781)
...++.
T Consensus 143 ~~~~~~ 148 (162)
T 3rkv_A 143 ERRAEK 148 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.6e-06 Score=79.08 Aligned_cols=114 Identities=13% Similarity=0.025 Sum_probs=85.9
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-c----------------c
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-P----------------G 724 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----------------~ 724 (781)
.....|+++++.+.++...+. .+. ...+..+...+.+.|++++|++.++++ ...|+ . .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE---KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ---------CCCSGGGCCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 334456666666666543322 222 456778899999999999999999876 33332 2 5
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+..+...+...|++++|+..++++++.+|+++.++..+|.+|...|++++|++.+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 77888888999999999999999999999999999999999999999999998865
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.4e-06 Score=71.09 Aligned_cols=107 Identities=14% Similarity=0.064 Sum_probs=79.4
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-------------cchHHHHHHHhhhcCChHHHHHHHHhC-CC---
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-------------TEHHVCIVDMLGRSGKLQEAYEFIKNL-PI--- 719 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--- 719 (781)
.+......+...|++++|...|++.++- .|+ ...|..+..++.+.|++++|+..+++. ..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3444455566677777777777777654 333 127788888888888888888877665 34
Q ss_pred ----CCC-cchH----HHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHH
Q 035828 720 ----QPK-PGVW----GAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 720 ----~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
.|+ ...| .....++...|++++|+..|++++++.|++..+...+..+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 675 4467 8888999999999999999999999999988876655443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.1e-06 Score=74.03 Aligned_cols=132 Identities=11% Similarity=0.048 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----c
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIR-PT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----T 691 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~ 691 (781)
.++..+...+...|++++|+..+++..+..-. ++ ..++..+...+...|++++|.+.+++..+.....++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35666666677777777777777766542100 11 125555666666666777777666665543211111 2
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-------CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-------PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
..+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...++++.++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555555566666666665555443 0000 1123344444444555555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=98.02 E-value=5.2e-05 Score=74.63 Aligned_cols=431 Identities=10% Similarity=0.080 Sum_probs=239.3
Q ss_pred CCccchhHHHHHhhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhc
Q 035828 6 HLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQ 85 (781)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 85 (781)
.+.+|+.|.++..+.+++.+|.+-| +...|+..|..+|.+..+.|.+++-..++...++..- ++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 4568999999999999999998876 4566777899999999999999999998887766533 44555678889999
Q ss_pred cCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccCC------------------------CCCeee
Q 035828 86 MNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMH------------------------CADTVS 141 (781)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------------------------~~~~~~ 141 (781)
.++..+-.+++. .|+..-...+-.-|...|.++.|.-+|..+. ..++.|
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 988777665543 3666566666666777777777777776653 237788
Q ss_pred hHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 035828 142 WNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMY 221 (781)
Q Consensus 142 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 221 (781)
|-.+-.+|...+.+.-|...--.+.- .+.-+..++..|...|.+++...+++... |.+. ....+|+-|--.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEagl--glEr-AHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAAL--GLER-AHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCc-hhHHHHHHHHHHH
Confidence 88888888888888877655433332 22233456667778888887777776655 3222 2366788887777
Q ss_pred HhcCChhHHHH---Hh-ccCCCC-------CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 035828 222 SQCGDIEAAER---AF-WGMTCK-------DVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCAD 290 (781)
Q Consensus 222 ~~~g~~~~a~~---~~-~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 290 (781)
++- +.++..+ +| .++.-| ....|.-++-.|++-.+++.|... |.++ .|+......+.....+
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h---~~~Aw~h~~Fkdii~K 346 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH---PTDAWKEGQFKDIITK 346 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC---HHHHCCGGGGTTTGGG
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC---ChhhccHHHHHHHHHH
Confidence 775 3333333 33 223222 445677777777777777655432 2211 1111111111111122
Q ss_pred ccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC------------CCCeeeHHHHHHHHHHH
Q 035828 291 SLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP------------MNDLVSWNSMISGLFKE 358 (781)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~~ll~~l~~~ 358 (781)
..+.+. +-..+..-+.-.+...+-|+.++...=|...+.++|++... ..+....|.-+..++-+
T Consensus 347 VaN~Ei----yYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 347 VANVEL----YYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp CSCSHH----HHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred cchHHH----HHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 222221 11111111222233344444444444444444444443322 13444444444433322
Q ss_pred HHHhcccCCchhhhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccH
Q 035828 359 MLYLCSQFSFSTLLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCW 438 (781)
Q Consensus 359 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 438 (781)
.-|..++...+..+..-..+..|.++-. .+-...-.+-...|.+.+++.++..+.++= ..|
T Consensus 423 ------EEDy~~LR~SId~ydNFD~i~LA~rLEk-------HeL~eFRrIAA~LYkkn~rw~qsi~l~KkD------kly 483 (624)
T 3lvg_A 423 ------EEDYQALRTSIDAYDNFDNISLAQRLEK-------HELIEFRRIAAYLFKGNNRWKQSVELCKKD------SLY 483 (624)
T ss_dssp ------TTCCHHHHHTTSSCCCSCTTHHHHHHHT-------CSSHHHHHHHHHHHHTTCHHHHHSSCSSTT------CCT
T ss_pred ------hhhHHHHHHHHHHhccccHHHHHHHHhh-------CchHHHHHHHHHHHHhcccHHHHHHHHHhc------ccH
Confidence 3455566666666666666666555411 011111112223455555666555443221 122
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHH
Q 035828 439 NIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFE 489 (781)
Q Consensus 439 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 489 (781)
.-.|.....+|+.+-|.++++-..+.| +...|...+-.|...=+++.
T Consensus 484 kDAietAa~S~~~elaeeLL~yFv~~g----~~EcF~a~LytCYdLlrpDv 530 (624)
T 3lvg_A 484 KDAMQYASESKDTELAEELLQWFLQEE----KRECFGACLFTCYDLLRPDV 530 (624)
T ss_dssp TGGGTTTTTCCCTTHHHHHHHHHHHHC----STHHHHHHHHHTSSSSSCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC----chHHHHHHHHHHhhccChHH
Confidence 333344445566666666666665554 33445455555544444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.3e-06 Score=72.58 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=53.9
Q ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 723 PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 723 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...+..+..++.+.|++++|+..++++++++|+++.+++.+|.+|...|++++|++.+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~ 120 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDL 120 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHH
Confidence 3468888888999999999999999999999999999999999999999999998764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-05 Score=79.76 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc------------------chHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET------------------EHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
..+..+...+.+.|++++|...|++.++. .|+. ..|..+..+|.+.|++++|++.++++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35667788899999999999999998765 5553 27899999999999999999999887
Q ss_pred -CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH-hcCChhhHHhhc
Q 035828 718 -PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV-ALGRWKDAVEIG 780 (781)
Q Consensus 718 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~l~ 780 (781)
...| +...+..+..++...|++++|...++++++++|+++.++..|+.+.. ..++.++|.+++
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445 56688999999999999999999999999999999999999999844 456666766654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.00 E-value=5.7e-06 Score=69.08 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=78.0
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC-------CchHHH
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN-------VGYYIS 762 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~ 762 (781)
..+..++..+...|++++|+..+++. ...| +...+..+...+...|++++|...++++.+..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45778889999999999999999887 3334 56678888888999999999999999999998876 888999
Q ss_pred HHHHHHhcCChhhHHhhc
Q 035828 763 LSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 763 l~~~~~~~g~~~~A~~l~ 780 (781)
++.+|...|++++|++.+
T Consensus 85 la~~~~~~~~~~~A~~~~ 102 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFY 102 (131)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHH
Confidence 999999999999998865
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0014 Score=63.71 Aligned_cols=130 Identities=11% Similarity=0.071 Sum_probs=78.6
Q ss_pred hHHHHHHhhhcC---CCChhhHHHHHHHHHhC-C-ChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchH--------
Q 035828 522 IKSASTVFESCY---NCNLCTWNCMISAFSQN-K-AEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLR-------- 586 (781)
Q Consensus 522 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~-------- 586 (781)
+++++++++.+. ..+..+|+.-...+... + ++++++++++++ ...| |...++.-.-.+.+.+.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~ 184 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWG 184 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHH
Confidence 555555555544 22334555544444443 4 566667766666 5444 3444443333333333333
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC-------hHHHHHHHHHHHhCCCCC-CHHHH
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK-------GWEAIELFHEMCNSGIRP-TKSSV 658 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~g~~p-~~~~~ 658 (781)
++.+..+.+++..+ .|..+|+-....+.+.++ ++++++.++++.. ..| |...|
T Consensus 185 eELe~~~k~I~~dp-----------------~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW 245 (349)
T 3q7a_A 185 SELDWCNEMLRVDG-----------------RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAW 245 (349)
T ss_dssp HHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHH
Confidence 77777777777654 377889888888888876 6889999999887 455 55667
Q ss_pred HHHHHHhcccCc
Q 035828 659 ISLLSACSHSGL 670 (781)
Q Consensus 659 ~~l~~~~~~~~~ 670 (781)
+.+-..+.+.|+
T Consensus 246 ~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 246 NYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC
Confidence 665555554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=2e-05 Score=68.65 Aligned_cols=125 Identities=13% Similarity=0.007 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC----cchHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC----c
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNL-P---IQPK----P 723 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~ 723 (781)
.++..+...+...|++++|...+++.++...-.++ ...+..+...+...|++++|.+.+++. . ..++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 47778888889999999999999998765222222 257889999999999999999998875 1 1111 3
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhccCC------CCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 724 GVWGAMLSACSHHGDTKMGKQVAELLFKLEP------ENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..+..+...+...|++++|...++++.+..+ ..+..+..++.+|...|++++|.+.+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4677788888999999999999999997742 23456889999999999999998765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=6e-05 Score=78.44 Aligned_cols=158 Identities=8% Similarity=-0.056 Sum_probs=116.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHhcccCcHHHHHHHHHHhHHHc---CCCCC-cc
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSG-IRPTK----SSVISLLSACSHSGLVDEGLQYYNNMLEEY---DVRPE-TE 692 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~-~~ 692 (781)
++..+...|...|++++|.+.+..+...- -.++. .+.+.+...+...|+.++|.++++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 36678888999999999999999887521 11222 233344445566889999999998876532 22333 36
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-----CC--CC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCC---CC----C
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-----PI--QP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEP---EN----V 757 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~----~ 757 (781)
++..++..|...|++++|.++++++ +. +| ...++..+++.|...|++++|...++++....+ ++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999998866 11 12 234678888889999999999999999987643 22 2
Q ss_pred chHHHHHHHHHhcCChhhHHhh
Q 035828 758 GYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~l 779 (781)
..+..++..+...|++++|...
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 3466788889999999999764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.90 E-value=2.8e-05 Score=59.75 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=66.8
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
...+..+...+...|++++|++.+++. ...| +...+..+...+...|++++|...++++.+++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 356677778888888888888888766 3334 45577888888899999999999999999999999999999999998
Q ss_pred hcC
Q 035828 769 ALG 771 (781)
Q Consensus 769 ~~g 771 (781)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0011 Score=64.15 Aligned_cols=230 Identities=13% Similarity=0.112 Sum_probs=148.9
Q ss_pred hcCChH-HHHHHhhhcCCCCh---hhHHHHHHHHHhCCC----------hhHHHHHHhhc-CCCC-CHhHHHHHHHHhcc
Q 035828 518 RCRDIK-SASTVFESCYNCNL---CTWNCMISAFSQNKA----------EVRALELFRHL-EFEP-NEISIVSILSACTQ 581 (781)
Q Consensus 518 ~~g~~~-~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~----------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 581 (781)
+.|.++ +|+.+++.+...|+ .+|+.--..+...+. +++++.+++.+ ...| +..+++.---.+..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 455554 67888877764333 455543333322222 56778888877 5555 44555544444444
Q ss_pred cC--chHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHH
Q 035828 582 LG--VLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGK-GWEAIELFHEMCNSGIRPTKSSV 658 (781)
Q Consensus 582 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~ 658 (781)
.+ +++++..+++.+.+.... +-.+|+--.-.+...|. ++++++.++++.+.. +-|...|
T Consensus 121 l~~~~~~~EL~~~~k~l~~dpr-----------------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW 182 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADER-----------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 182 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 55 478888888888875543 22356666666667777 589999999998843 2255566
Q ss_pred HHHHHHhccc--------------CcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhc-----------CChHHHHH
Q 035828 659 ISLLSACSHS--------------GLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRS-----------GKLQEAYE 712 (781)
Q Consensus 659 ~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~ 712 (781)
+.....+... +.++++++.+++.+.. .|+ ...|..+-..+.+. +.++++++
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 6555444433 4678999999998865 676 45555444444443 45788888
Q ss_pred HHHhC-CCCCCcchHHHHHHHH-----HhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 713 FIKNL-PIQPKPGVWGAMLSAC-----SHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 713 ~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
.++++ ...|+. .|.-+..++ ...|..++...++.++.+++|-....|..+...+.-
T Consensus 260 ~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~~ 321 (331)
T 3dss_A 260 SCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 321 (331)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 88877 566765 343332222 246788899999999999999999999988776554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.83 E-value=5.5e-05 Score=78.72 Aligned_cols=153 Identities=10% Similarity=-0.011 Sum_probs=115.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-C---------------HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc
Q 035828 628 SAYGYHGKGWEAIELFHEMCNSGIRP-T---------------KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET 691 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~g~~p-~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 691 (781)
..+.+.|++++|++.|.+..+..-.. + ...+..+...|...|++++|.+.++.+.+..+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 44577899999999999998743221 1 1247788999999999999999999987653333332
Q ss_pred ----chHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccC------
Q 035828 692 ----EHHVCIVDMLGRSGKLQEAYEFIKNL-------PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLE------ 753 (781)
Q Consensus 692 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 753 (781)
.+...+...+...|++++|++++++. +..+. ...+..++..+...|++++|...++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23445556667789999999887765 22222 3467788888999999999999999988652
Q ss_pred CCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 754 PENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 754 p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|....++..++.+|...|++++|..++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASL 198 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 334457889999999999999998765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.79 E-value=2.9e-05 Score=61.05 Aligned_cols=82 Identities=9% Similarity=0.018 Sum_probs=52.2
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCC--CCchHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPE--NVGYYISLSNM 766 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 766 (781)
...+..+..+|.+.|++++|++.++++ ...| +...|..+..++...|++++|...+++++++.|. +......+..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~ 86 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA 86 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence 456667777777777777777777765 3333 3446667777777777777777777777776653 34444455555
Q ss_pred HHhcCC
Q 035828 767 YVALGR 772 (781)
Q Consensus 767 ~~~~g~ 772 (781)
+...+.
T Consensus 87 l~~~~~ 92 (100)
T 3ma5_A 87 KLKAEG 92 (100)
T ss_dssp HHHHHT
T ss_pred HHHccc
Confidence 554443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00035 Score=67.69 Aligned_cols=130 Identities=9% Similarity=-0.010 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccC--cHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCC-hHHH
Q 035828 636 GWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSG--LVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGK-LQEA 710 (781)
Q Consensus 636 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~-~~~A 710 (781)
+++++.+++.+.. ..| +..+|+.-...+...+ ++++++++++++++. .|. ...|+.-..++...|. ++++
T Consensus 90 l~~EL~~~~~~L~--~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~---dprNy~AW~~R~~vl~~l~~~~~ee 164 (331)
T 3dss_A 90 VKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEE 164 (331)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 5778888888877 344 5556666665665656 478899999988865 554 4667666666777777 5888
Q ss_pred HHHHHhC-CCCC-CcchHHHHHHHHHhc--------------CCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 711 YEFIKNL-PIQP-KPGVWGAMLSACSHH--------------GDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 711 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
++.++++ ...| |...|+.....+.+. +.++++.+.+++++..+|+|..+++.+..++...
T Consensus 165 l~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 165 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 8887776 3344 455676666665554 4578999999999999999999999888887766
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.76 E-value=2.6e-05 Score=81.61 Aligned_cols=125 Identities=11% Similarity=-0.003 Sum_probs=97.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhc
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRS 704 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 704 (781)
...+...|++++|++.+++..+ ..| +...+..+..++...|++++|.+.+++.++. .|+ ...|..+..+|.+.
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 3345678999999999999988 455 4678999999999999999999999999854 676 57899999999999
Q ss_pred CChHHHHHHHHhC-CCCC-CcchHHHHHHH--HHhcCCcHHHHHHHH-----------HHhccCCCC
Q 035828 705 GKLQEAYEFIKNL-PIQP-KPGVWGAMLSA--CSHHGDTKMGKQVAE-----------LLFKLEPEN 756 (781)
Q Consensus 705 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~p~~ 756 (781)
|++++|++.++++ ...| +...+..+..+ +.+.|++++|++.++ ++.+..|+.
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999887 3444 34456666555 778899999999999 777776653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.74 E-value=6.3e-05 Score=77.99 Aligned_cols=116 Identities=11% Similarity=0.053 Sum_probs=71.8
Q ss_pred hcccCcHHHHHHHHHHhHHHcCC-----CCC-cchHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-cchHHH
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDV-----RPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL---------PIQPK-PGVWGA 728 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~-----~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 728 (781)
+...|++++|..++++.++...- .|+ ..+++.|+.+|...|+|++|..++++. ...|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34456666666666665544211 122 356666777777777777776665544 12333 235677
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhcc-----CCCCCchH---HHHHHHHHhcCChhhHHhhc
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKL-----EPENVGYY---ISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~---~~l~~~~~~~g~~~~A~~l~ 780 (781)
+...|...|++++|+.++++++++ +|++|.+. ..|..++..+|++++|..++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777753 56666654 45667777778888877664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00014 Score=75.83 Aligned_cols=126 Identities=8% Similarity=0.017 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHhcccCcHHHHHHHHHHhHHHc
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPT----------------KSSVISLLSACSHSGLVDEGLQYYNNMLEEY 685 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 685 (781)
.|..+...+.+.|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|+..++++++.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 577788889999999999999999987 3443 478889999999999999999999999865
Q ss_pred CCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHH-HHHHHHhcc
Q 035828 686 DVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGK-QVAELLFKL 752 (781)
Q Consensus 686 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 752 (781)
.|+ ...|..+..+|...|++++|+..|+++ ...| +...+..+...+.+.|+.++|. ..+.+++..
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 665 688999999999999999999999987 5666 4557788888888888888776 455666544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.69 E-value=3.7e-05 Score=62.38 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=74.4
Q ss_pred HHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHH
Q 035828 673 EGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELL 749 (781)
Q Consensus 673 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (781)
+|.+.+++.+ ...|+ ...+..+...|...|++++|++.+++. ...| +...|..+...+...|++++|...++++
T Consensus 3 ~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677788776 34665 578889999999999999999999876 3444 4557888888899999999999999999
Q ss_pred hccCCC--CCchHHHHHHHHHhcCCh
Q 035828 750 FKLEPE--NVGYYISLSNMYVALGRW 773 (781)
Q Consensus 750 ~~~~p~--~~~~~~~l~~~~~~~g~~ 773 (781)
.++.|+ +......+...+...|+.
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHhccc
Confidence 998875 344455565555554443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=6.2e-05 Score=63.26 Aligned_cols=113 Identities=12% Similarity=-0.000 Sum_probs=83.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh----cCCh
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR----SGKL 707 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 707 (781)
..+++++|+++|++..+.| .|+.. |...|...+.+++|.++|++..+. -++..+..|...|.. .+++
T Consensus 7 ~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccH
Confidence 3456788888888888877 33333 666677777788888888887653 345667778888877 7788
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccC
Q 035828 708 QEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLE 753 (781)
Q Consensus 708 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 753 (781)
++|++++++.-...++..+..+...+.. .+|.++|..+++++.+.+
T Consensus 78 ~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888888877333556667777777777 788888888888887774
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.61 E-value=2.3e-05 Score=77.04 Aligned_cols=399 Identities=16% Similarity=0.156 Sum_probs=227.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 035828 211 VSVTNSLISMYSQCGDIEAAERAFWGMTCKDVVSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIATVVTLISLCAD 290 (781)
Q Consensus 211 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 290 (781)
..+|..|-.+....|++.+|++-|-+ ..|+..|..+|....+.|.+++-+..+.-.++.. -.| ..=+.|+-++++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RES--YVETELIFALAK 128 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CST--TTTHHHHHHHHT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-ccc--ccHHHHHHHHHh
Confidence 56788888888888888888765543 4577788899999999999999888877665532 333 344578888888
Q ss_pred ccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCeeeHHHHHHHHHHHHHHhcccCCchh
Q 035828 291 SLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAPMNDLVSWNSMISGLFKEMLYLCSQFSFST 370 (781)
Q Consensus 291 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~ 370 (781)
.++..+.++++. .|+..-...+-+-|...|.++.|.-+|..+..
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------------------------- 172 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------------------------- 172 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----------------------------
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----------------------------
Confidence 888887766653 46666666777778888888888888877765
Q ss_pred hhhhhcccCCCcchhhhHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCC
Q 035828 371 LLAILPSCNSPESLEFGKSIHCWQLKLGFSNNTIGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGH 450 (781)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~ 450 (781)
+..+-..+...+++..|.+ . .++..++.+|..+-.+|...+.
T Consensus 173 ~akLAstLV~L~~yq~AVd-----------------------------------a---ArKAns~ktWKeV~~ACvd~~E 214 (624)
T 3lvg_A 173 FGRLASTLVHLGEYQAAVD-----------------------------------G---ARKANSTRTWKEVCFACVDGKE 214 (624)
T ss_dssp CTTTSSSSSSCSGGGSSTT-----------------------------------T---TTTCCSSCSHHHHTHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------------------------H---HHhcCChhHHHHHHHHHhCchH
Confidence 2223333333333332221 1 1123578888888888888887
Q ss_pred hHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhh
Q 035828 451 FQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFE 530 (781)
Q Consensus 451 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 530 (781)
+.-|...--.+. +.||.- ..++..|.+.|.+++-+.+++
T Consensus 215 frLAqicGLniI----vhadeL-------------------------------------~elv~~YE~~G~f~ELIsLlE 253 (624)
T 3lvg_A 215 FRLAQMCGLHIV----VHADEL-------------------------------------EELINYYQDRGYFEELITMLE 253 (624)
T ss_dssp TTTTTHHHHHHH----CCSSCC-------------------------------------SGGGSSSSTTCCCTTSTTTHH
T ss_pred HHHHHHhcchhc----ccHHHH-------------------------------------HHHHHHHHhCCCHHHHHHHHH
Confidence 776644433333 222211 124445666677776666666
Q ss_pred hcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHH
Q 035828 531 SCY---NCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFIS 607 (781)
Q Consensus 531 ~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 607 (781)
.-. ....-.++.|.-.|++- ++++-++.++....+-|.. -++++|..
T Consensus 254 aglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNip---KviracE~-------------------------- 303 (624)
T 3lvg_A 254 AALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIP---KVLRAAEQ-------------------------- 303 (624)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCT---TTHHHHTT--------------------------
T ss_pred HHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHH---HHHHHHHH--------------------------
Confidence 443 34445666666666555 4555555555441111111 13344433
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCC
Q 035828 608 SALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDV 687 (781)
Q Consensus 608 ~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 687 (781)
...|.-++-.|..-.+++.|... |.+ ..|+.+-...+.....+..+.|--.+...=-+ ..
T Consensus 304 ------------ahLW~ElvfLY~~ydE~DnA~lt---Mi~--h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL---~e 363 (624)
T 3lvg_A 304 ------------AHLWAELVFLYDKYEEYDNAIIT---MMN--HPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF 363 (624)
T ss_dssp ------------TTCHHHHHHHHHHHTCHHHHHHT---TTS--CHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHT---TS
T ss_pred ------------HhhHHHHHHHHhcchhHHHHHHH---HHh--CChhhccHHHHHHHHHHcchHHHHHHHHHHHH---Hh
Confidence 33577777777888888877543 332 12233323333334444444443222222112 22
Q ss_pred CCCcchHHHHHHHhhhcCChHHHHHHHHhCC------------CCCCcc-hHHHHHHHHHhcCCcHHHHHHHH-------
Q 035828 688 RPETEHHVCIVDMLGRSGKLQEAYEFIKNLP------------IQPKPG-VWGAMLSACSHHGDTKMGKQVAE------- 747 (781)
Q Consensus 688 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~------- 747 (781)
.|. ..+.|+.++...=+..++.+++++.+ .+-|.. +-.++-..+....|++.-..-.+
T Consensus 364 ~P~--lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~ 441 (624)
T 3lvg_A 364 KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDN 441 (624)
T ss_dssp CCT--TSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCT
T ss_pred ChH--HHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccH
Confidence 343 34555555555556666666666652 122333 33444444566777665432211
Q ss_pred --HHhccC-CCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 748 --LLFKLE-PENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 748 --~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
-+.++. .+-...-.--+.+|.+.++|+++++|.|
T Consensus 442 i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~K 478 (624)
T 3lvg_A 442 ISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCK 478 (624)
T ss_dssp THHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSS
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 011111 1112223334567889999999998865
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.59 E-value=6.5e-05 Score=75.53 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=77.4
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC-C----------------CCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCC
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL-P----------------IQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~-~----------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 754 (781)
.+..+...+.+.|++++|++.++++ . ..| +...|..+...+.+.|++++|+..++++++++|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3667888999999999999998776 2 233 345788889999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 755 ENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 755 ~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+++.++..++.+|...|++++|++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l 330 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADL 330 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999999999999999999865
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00024 Score=59.62 Aligned_cols=106 Identities=12% Similarity=0.010 Sum_probs=87.6
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMG 742 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 742 (781)
..+|.++|.++|++..+. + .|. .. |...|...+..++|++++++.-...++..+..+...+.. .+|+++|
T Consensus 7 ~~~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CccCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 346889999999998765 4 333 23 888888888999999999987444566778888888887 7899999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHh----cCChhhHHhhc
Q 035828 743 KQVAELLFKLEPENVGYYISLSNMYVA----LGRWKDAVEIG 780 (781)
Q Consensus 743 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~l~ 780 (781)
..+++++.+. .++.++..|+.+|.. .++.++|++.+
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 9999999887 678899999999999 89999998765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00015 Score=55.48 Aligned_cols=67 Identities=10% Similarity=0.017 Sum_probs=37.9
Q ss_pred cchHHHHHHHhhhcCC---hHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 691 TEHHVCIVDMLGRSGK---LQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
+..+..+..++...++ .++|..++++. ...|+ +.....+...+...|++++|+..|+++++.+|+++
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4555556665543333 56666666655 34443 33444555556666666666666666666666633
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=8.6e-05 Score=62.41 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=60.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcH----------HHHHHHHHHhHHHcCCCCC-cchHHHHH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLV----------DEGLQYYNNMLEEYDVRPE-TEHHVCIV 698 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 698 (781)
.+.+.+++|++.+++..+ ..| +...|..+..++...+++ ++|+..|++.++. .|+ ...|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHH
Confidence 455566666666666665 334 444555555555555443 3555555555533 554 34555555
Q ss_pred HHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHH
Q 035828 699 DMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLS 764 (781)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 764 (781)
.+|...|++ .|+.. ...|++++|++.++++++++|+++.....+-
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 555554432 12210 1126888888888888888888775554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00043 Score=71.72 Aligned_cols=125 Identities=10% Similarity=-0.006 Sum_probs=95.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHc-----CCCCC-cchH
Q 035828 628 SAYGYHGKGWEAIELFHEMCNS---GIRPT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEY-----DVRPE-TEHH 694 (781)
Q Consensus 628 ~~~~~~~~~~~A~~~~~~m~~~---g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~-~~~~ 694 (781)
..+...|++++|+.++++.++. -+-|+ ..+++.|..+|...|++++|..++++.++.+ ...|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999999887652 13333 2489999999999999999999999976542 22344 4789
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC--------C-CCCCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhcc
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL--------P-IQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKL 752 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~--------~-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (781)
+.|+..|...|++++|..+++++ | ..|+.. ....+..++...|.+++|+..+.++.+.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998776 2 334333 3445555566789999999999998764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.40 E-value=8.8e-05 Score=59.52 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 035828 621 AAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNML 682 (781)
Q Consensus 621 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 682 (781)
..|..+...+...|++++|++.|++..+. .| +...+..+..++...|++++|.+.+++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444555555555555555555555442 22 33444445555555555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=4e-05 Score=64.42 Aligned_cols=89 Identities=11% Similarity=0.062 Sum_probs=64.9
Q ss_pred ccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHH
Q 035828 667 HSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQV 745 (781)
Q Consensus 667 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 745 (781)
+.+.+++|.+.++..++. .|+ ...|..+..++.+.++++.+.+.++ .+++|+..
T Consensus 14 r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~~ 68 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHHH
Confidence 345566677777666644 554 4566666666666665554443321 37899999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcC-----------ChhhHHhhc
Q 035828 746 AELLFKLEPENVGYYISLSNMYVALG-----------RWKDAVEIG 780 (781)
Q Consensus 746 ~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~l~ 780 (781)
++++++++|+++.+++.+|.+|...| ++++|++.+
T Consensus 69 le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~ 114 (158)
T 1zu2_A 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF 114 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHH
Confidence 99999999999999999999999875 899998764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0011 Score=70.58 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=109.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhcccCc----------HHHHHHHHHHhHHHcCCCCC-cchHHHHHH
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKS-SVISLLSACSHSGL----------VDEGLQYYNNMLEEYDVRPE-TEHHVCIVD 699 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 699 (781)
.....++|++.++++.. +.|+.. .|+.--.++...|+ ++++++.++++++. .|. ..+|..-..
T Consensus 41 ~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w 115 (567)
T 1dce_A 41 AGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCW 115 (567)
T ss_dssp TTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 33456788999999998 677554 56655555555555 89999999999876 676 478888888
Q ss_pred HhhhcC--ChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC-CcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 700 MLGRSG--KLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG-DTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 700 ~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
++.+.| ++++|++.++++ ...| +...|..-...+.+.| .++++.+.++++++.+|.+..+|...+.++...
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 888889 779999999988 4444 5668888888888888 899999999999999999999999999998874
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00032 Score=56.71 Aligned_cols=76 Identities=13% Similarity=0.040 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHH
Q 035828 637 WEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFI 714 (781)
Q Consensus 637 ~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 714 (781)
++|++.|++..+. .| +...+..+...+...|++++|...+++.++. .|+ ...|..+..+|...|++++|...+
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4678888888873 44 5678888888999999999999999998865 565 578889999999999999999988
Q ss_pred HhC
Q 035828 715 KNL 717 (781)
Q Consensus 715 ~~~ 717 (781)
++.
T Consensus 77 ~~a 79 (115)
T 2kat_A 77 ESG 79 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00037 Score=53.24 Aligned_cols=58 Identities=22% Similarity=0.389 Sum_probs=53.5
Q ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 723 PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 723 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...+..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|++.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 66 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4567778888999999999999999999999999999999999999999999998764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0015 Score=66.51 Aligned_cols=95 Identities=6% Similarity=-0.026 Sum_probs=57.6
Q ss_pred cCcHHHHHHHHHHhHHHcC--CCCC----cchHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-cchHHHHHH
Q 035828 668 SGLVDEGLQYYNNMLEEYD--VRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNL---------PIQPK-PGVWGAMLS 731 (781)
Q Consensus 668 ~~~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~ 731 (781)
.|++++|..++++.++... +.|+ ..+++.|..+|...|+|++|+.++++. ...|+ ..+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3566666666666554311 1222 256666777777777777777666554 13333 235677777
Q ss_pred HHHhcCCcHHHHHHHHHHhcc-----CCCCCchHHH
Q 035828 732 ACSHHGDTKMGKQVAELLFKL-----EPENVGYYIS 762 (781)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~ 762 (781)
.|...|++++|+.++++++++ +|++|.+-..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 777777777777777777753 5777755443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00081 Score=52.53 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 654 TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
+...+..+..++...|++++|...|++.++. .|+ ...|..+..+|...|++++|++.+++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET---DPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456666777777777777777777777654 454 466777777777777777777776654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.002 Score=50.13 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=35.1
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-Ccc-hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchH
Q 035828 697 IVDMLGRSGKLQEAYEFIKNL-PIQP-KPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYY 760 (781)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 760 (781)
.+..+.+.|++++|++.++++ ...| +.. .+..+...+...|++++|...++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344455555666665555554 2233 233 455555555566666666666666666666666555
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.003 Score=64.46 Aligned_cols=101 Identities=13% Similarity=0.005 Sum_probs=67.1
Q ss_pred HHhcccCcHHHHHHHHHHhHHHcC--CCCC----cchHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-cchH
Q 035828 663 SACSHSGLVDEGLQYYNNMLEEYD--VRPE----TEHHVCIVDMLGRSGKLQEAYEFIKNL---------PIQPK-PGVW 726 (781)
Q Consensus 663 ~~~~~~~~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~ 726 (781)
..+...|++++|..++++.++... +.|+ ..+++.|+.+|...|+|++|+.+++++ +..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 344556777777777777664321 1222 356777777888888888887776654 13333 3357
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhcc-----CCCCCchHHHH
Q 035828 727 GAMLSACSHHGDTKMGKQVAELLFKL-----EPENVGYYISL 763 (781)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l 763 (781)
+.+...+...|++++|+.++++++++ +|++|.+...+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 77788888888888888888888764 67777665543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0028 Score=49.76 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=54.7
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhCC---------CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHH
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNLP---------IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISL 763 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 763 (781)
-...++..+.+.|+++.|..+++.+- -.+...++..+..++.+.|+++.|...++++.++.|+++.+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34456677777777777777766541 112345788888999999999999999999999999998887777
Q ss_pred H
Q 035828 764 S 764 (781)
Q Consensus 764 ~ 764 (781)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0031 Score=61.20 Aligned_cols=122 Identities=12% Similarity=-0.027 Sum_probs=81.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhcc---cC-----cHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhc
Q 035828 634 GKGWEAIELFHEMCNSGIRPTK-SSVISLLSACSH---SG-----LVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRS 704 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~---~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 704 (781)
....+|+.+|++..+ ..|+. ..|..+..++.. .+ ........++........+.++.+|..+...+...
T Consensus 213 ~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 345889999999998 67864 344433333321 11 11111112221111101133467888887777788
Q ss_pred CChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC
Q 035828 705 GKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV 757 (781)
Q Consensus 705 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 757 (781)
|++++|+..++++ ...|+...|..+...+.-.|+.++|.+.+++++.++|..+
T Consensus 291 gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 9999999999987 4557776777777788889999999999999999999875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0011 Score=51.51 Aligned_cols=52 Identities=25% Similarity=0.408 Sum_probs=48.0
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCc-hHHHHHHHHHhcCChhhHHhhc
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLEPENVG-YYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+..+...|++++|...++++.+.+|+++. .+..+|.+|...|++++|++.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~ 58 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNY 58 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455677899999999999999999999999 9999999999999999999865
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00075 Score=68.67 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=63.2
Q ss_pred hcCChHHHHHHHHhC------C---CCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhcc-----CCCCCc---hHHHHH
Q 035828 703 RSGKLQEAYEFIKNL------P---IQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKL-----EPENVG---YYISLS 764 (781)
Q Consensus 703 ~~g~~~~A~~~~~~~------~---~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~~~l~ 764 (781)
..|++++|+.++++. . ..|+ ..+++.+..+|...|++++|+.+++++++. +|++|. .+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999887765 1 2333 347899999999999999999999999864 466665 488899
Q ss_pred HHHHhcCChhhHHhhc
Q 035828 765 NMYVALGRWKDAVEIG 780 (781)
Q Consensus 765 ~~~~~~g~~~~A~~l~ 780 (781)
.+|..+|++++|+.++
T Consensus 390 ~~~~~qg~~~eA~~~~ 405 (433)
T 3qww_A 390 RLYMGLENKAAGEKAL 405 (433)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHhccCHHHHHHHH
Confidence 9999999999999876
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0068 Score=58.89 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=87.0
Q ss_pred CCCCHHHHHHHHHHhc--cc---CcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhh---cC-C-------hHHHHHH
Q 035828 651 IRPTKSSVISLLSACS--HS---GLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGR---SG-K-------LQEAYEF 713 (781)
Q Consensus 651 ~~p~~~~~~~l~~~~~--~~---~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g-~-------~~~A~~~ 713 (781)
.+.+...|...+++.. .. .+..+|..+|++.++. .|+. ..|..+..+|.- .+ . +..|.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456667777776543 22 3468999999999866 8883 556655554421 11 1 1122222
Q ss_pred HHhCC-CCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 714 IKNLP-IQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 714 ~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...+. .+.++..+..+...+...|+++.|...+++++.++|+ ...+..+|+++.-.|++++|.+.+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 22332 2445667777777777789999999999999999974 667889999999999999998764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0042 Score=51.51 Aligned_cols=92 Identities=10% Similarity=-0.030 Sum_probs=51.9
Q ss_pred HHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcC---ChHHHHHHHHhC-CCC-C--CcchHHHHHHHHHhcCCcHHHHH
Q 035828 672 DEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSG---KLQEAYEFIKNL-PIQ-P--KPGVWGAMLSACSHHGDTKMGKQ 744 (781)
Q Consensus 672 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A~~ 744 (781)
..+.+.|.+..+. + .++..+...+.+++++.+ +.++++.+|++. ... | +...+-.+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444332 1 244555555666666655 444666665554 222 3 23344455556677777777777
Q ss_pred HHHHHhccCCCCCchHHHHHH
Q 035828 745 VAELLFKLEPENVGYYISLSN 765 (781)
Q Consensus 745 ~~~~~~~~~p~~~~~~~~l~~ 765 (781)
.++++++.+|++..+....-.
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHH
Confidence 777777777777766655433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0031 Score=64.28 Aligned_cols=83 Identities=10% Similarity=0.091 Sum_probs=66.7
Q ss_pred HHHhhhcCChHHHHHHHHhC------CCCCC----cchHHHHHHHHHhcCCcHHHHHHHHHHhcc-----CCCCCc---h
Q 035828 698 VDMLGRSGKLQEAYEFIKNL------PIQPK----PGVWGAMLSACSHHGDTKMGKQVAELLFKL-----EPENVG---Y 759 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~ 759 (781)
+..+.+.|++++|++++++. ...|+ ..+++.++.+|...|++++|+.+++++++. .|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466789999999998765 13333 346888999999999999999999999864 466665 4
Q ss_pred HHHHHHHHHhcCChhhHHhhc
Q 035828 760 YISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 760 ~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+++||.+|..+|++++|+.++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~ 394 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNL 394 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHH
Confidence 778999999999999999875
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.074 Score=42.12 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=86.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 710 (781)
.-.|..++..++..+.... .+..-+|-+|--...+-+-+-..+.++.+-+-+.+.+ -.-.-.++.+|.+.|...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~-C~NlKrVi~C~~~~n~~s-- 91 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK-CQNLKSVVECGVINNTLN-- 91 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG-CSCTHHHHHHHHHTTCCC--
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh-hhcHHHHHHHHHHhcchH--
Confidence 3468889999998888752 3444566666555556677777777777633322221 123344555555555433
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhcC
Q 035828 711 YEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 711 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
...+.-+..+..+|..++-.+++..+....|.+|.....++.+|.+-|+..+|.++++
T Consensus 92 -------------e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 92 -------------EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp -------------HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 3444556667788888888888888777777778888888888888888888887753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.08 Score=59.89 Aligned_cols=191 Identities=10% Similarity=0.049 Sum_probs=94.3
Q ss_pred hcCChHHHHH-HhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHH
Q 035828 518 RCRDIKSAST-VFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVF 596 (781)
Q Consensus 518 ~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 596 (781)
..+++++|.+ ++..++..+ ....++..+.+.|..++|+++.+. |.. -+......|+++.|.++.+.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~~~--~~~~~~~~l~~~~~~~~a~~~~~~----~~~-----~f~~~l~~~~~~~A~~~~~~~- 678 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGKD--SLTKIARFLEGQEYYEEALNISPD----QDQ-----KFELALKVGQLTLARDLLTDE- 678 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCHH--HHHHHHHHHHHTTCHHHHHHHCCC----HHH-----HHHHHHHHTCHHHHHHHHTTC-
T ss_pred HhCCHHHHHHHHHhcCCchH--HHHHHHHHHHhCCChHHheecCCC----cch-----heehhhhcCCHHHHHHHHHhh-
Confidence 4566676666 543333011 225555666666766666655431 110 122234456666666654321
Q ss_pred HhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHH
Q 035828 597 HLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQ 676 (781)
Q Consensus 597 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 676 (781)
.+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 679 ---------------------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 679 ---------------------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 1223577777777777888777777777653 2333333334555554444
Q ss_pred HHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 677 YYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 677 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
+.+..... + -+..-..+|.+.|++++|++++.+ .+++++|..+.++ ..|..
T Consensus 729 ~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~-------------------~~~~~~A~~lA~~---~~~~~ 779 (814)
T 3mkq_A 729 LAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIK-------------------SQRFSEAAFLGST---YGLGD 779 (814)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH-------------------TTCHHHHHHHHHH---TTCCH
T ss_pred HHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHH-------------------cCChHHHHHHHHH---hCCCh
Confidence 43333221 1 123333344455555555555443 3455555555443 23322
Q ss_pred ---CchHHHHHHHHHhcCChhhHHhh
Q 035828 757 ---VGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 757 ---~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+.........+...|+.+.|..+
T Consensus 780 ~~i~~~~~~~~~~L~~~~~~~~a~~l 805 (814)
T 3mkq_A 780 NEVNDIVTKWKENLILNGKNTVSERV 805 (814)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHTTB
T ss_pred HHHHHHHHHHHHHHHhccchhHHHhh
Confidence 23344445555566665555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.19 Score=56.75 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=35.1
Q ss_pred HHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc
Q 035828 515 MYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL 563 (781)
Q Consensus 515 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 563 (781)
.....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456788888888877664 3457888888888888888887777655
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.024 Score=43.00 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=30.8
Q ss_pred CcchHHHHHHHHHhcCC---cHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 722 KPGVWGAMLSACSHHGD---TKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 722 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
++..+..+..++...++ .++|..+++++++++|+++.+...+|..+++.|++++|++.|
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w 66 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTW 66 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33344444444433322 455555555555555555555555555555555555555544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.77 Score=48.78 Aligned_cols=115 Identities=10% Similarity=0.067 Sum_probs=72.1
Q ss_pred CChHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHH
Q 035828 634 GKGWEAIELFHEMCNSG-IRPTKS--SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 710 (781)
.+.+.|..+|......+ +.+... ....+.......+...++...+...... .++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37788999998886543 322221 3333444444555356666777665432 34433444555556688999999
Q ss_pred HHHHHhCCCCC-C-cchHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 711 YEFIKNLPIQP-K-PGVWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 711 ~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
.+.|+.+...+ + ..-.--+.+++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999985433 2 22223345566778999999999999875
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.058 Score=42.88 Aligned_cols=95 Identities=8% Similarity=-0.056 Sum_probs=65.1
Q ss_pred cHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHH---HHHHHHhC-CCC-C--CcchHHHHHHHHHhcCCcHHH
Q 035828 670 LVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQE---AYEFIKNL-PIQ-P--KPGVWGAMLSACSHHGDTKMG 742 (781)
Q Consensus 670 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A 742 (781)
....+.+.|++.... + .|+..+-..+.+++.++.+..+ ++.++++. ... | .....-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344455555555443 2 3666777778888888876665 77777776 222 3 222345566678899999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHH
Q 035828 743 KQVAELLFKLEPENVGYYISLSNM 766 (781)
Q Consensus 743 ~~~~~~~~~~~p~~~~~~~~l~~~ 766 (781)
.+..+.+++..|++..+..+...+
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999998887765443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.081 Score=43.87 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhHHHcCCCC--CcchHHHHHHHhhhcCChHH
Q 035828 635 KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG---LVDEGLQYYNNMLEEYDVRP--ETEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 709 (781)
....+.+-|.+..+.|. ++..+...+..++.+.+ +.+++..++++..+. . .| ....+..|.-++.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 44556677777666654 67777777888888877 677999999999887 2 36 25777888899999999999
Q ss_pred HHHHHHhC-CCCCCcchHHHH
Q 035828 710 AYEFIKNL-PIQPKPGVWGAM 729 (781)
Q Consensus 710 A~~~~~~~-~~~p~~~~~~~l 729 (781)
|.+.++.+ ..+|+..-...+
T Consensus 90 A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHH
Confidence 99999987 677865544444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.019 Score=44.90 Aligned_cols=57 Identities=12% Similarity=-0.048 Sum_probs=48.4
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhccC-------CCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 724 GVWGAMLSACSHHGDTKMGKQVAELLFKLE-------PENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
..+-.++..+...|+++.|..+++++.+.. +..+.++..|+.+|.+.|++++|+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~ 69 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 345678888999999999999999999863 345667999999999999999998764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.21 Score=53.96 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=45.0
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHh
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVE 778 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 778 (781)
-+.-|...|+++.|..+.+++....|.+..+|..|+.+|.+.|+|+.|+=
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence 34556778999999999999999999999999999999999999999974
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.26 Score=45.84 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhccc-----CcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhc
Q 035828 635 KGWEAIELFHEMCNSGIRPT---KSSVISLLSACSHS-----GLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRS 704 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 704 (781)
....|...+++..+ +.|+ ...|..|...|... |+.++|.+.|++.++- .|+ ..++....+.+++.
T Consensus 178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHh
Confidence 45678888888888 7787 55788888888774 9999999999999855 774 67888899999885
Q ss_pred -CChHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHh
Q 035828 705 -GKLQEAYEFIKNL-PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLF 750 (781)
Q Consensus 705 -g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (781)
|+.++|.+.+++. ..+|.......+. ..+..++|..+++++-
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~~P~~~la----n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPESVPHNKLL----VILSQKRARWLKAHVQ 296 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGGCSSCHHH----HHHHHHHHHHHHHTHH
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCChhHH----HHHHHHHHHHHHHHhH
Confidence 9999999999886 3444421112222 2223456666665543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.067 Score=49.67 Aligned_cols=84 Identities=11% Similarity=0.140 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHhHHHcCCCCC---cchHHHHHHHhhh-----cCChHHHHHHHHhC-CCCCC--cchHHHHHHHHHh-cC
Q 035828 670 LVDEGLQYYNNMLEEYDVRPE---TEHHVCIVDMLGR-----SGKLQEAYEFIKNL-PIQPK--PGVWGAMLSACSH-HG 737 (781)
Q Consensus 670 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~g 737 (781)
....|...+++.++ +.|+ ...|..+...|.. -|+.++|.+.|++. .+.|+ ..++......++. .|
T Consensus 178 ~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 45677777887764 4887 5689999999988 49999999999987 56774 5667777777777 59
Q ss_pred CcHHHHHHHHHHhccCCCC
Q 035828 738 DTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~ 756 (781)
+++.|.+.+++++...|..
T Consensus 255 d~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHHcCCCCC
Confidence 9999999999999998874
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.11 Score=42.31 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHhcccCcH------HHHHHHHHHhHHHcCCCCCc-chHHHHHH------HhhhcCChHHHHHHHHhC-CC
Q 035828 654 TKSSVISLLSACSHSGLV------DEGLQYYNNMLEEYDVRPET-EHHVCIVD------MLGRSGKLQEAYEFIKNL-PI 719 (781)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~------~~~~~g~~~~A~~~~~~~-~~ 719 (781)
|..+|-..+.-..+.|+. ++..++|++.... ++|+. ..+...|. .+...++.++|.++++.+ ..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 566888888888888998 8888999988765 66652 22222221 123457888888888877 11
Q ss_pred CC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 720 QP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 720 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
.. =+.+|.....-..++|+.+.|.+++.+++...|.+...+-.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 11 14566666666778999999999999999988876554443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.38 E-value=2.5 Score=33.74 Aligned_cols=82 Identities=16% Similarity=0.095 Sum_probs=62.2
Q ss_pred cCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc-C-CCCCHhHHHHHHHHhcccCchHHHHHHHHHHH
Q 035828 519 CRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL-E-FEPNEISIVSILSACTQLGVLRHGKQIHGHVF 596 (781)
Q Consensus 519 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 596 (781)
+|++....+.+-.+-. +....+..+..+...|+-++-.+++..+ + .+|+...+..+..+|.+.|+..++.+++.+.-
T Consensus 74 C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 4444444444433322 2224556678888999999999999995 4 88888999999999999999999999999998
Q ss_pred HhCCC
Q 035828 597 HLGFQ 601 (781)
Q Consensus 597 ~~~~~ 601 (781)
+.|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 88875
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.33 E-value=3.4 Score=35.19 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=66.9
Q ss_pred HHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHH
Q 035828 411 HMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEG 490 (781)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 490 (781)
......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-.|...|+.+..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence 3456788999998888777 4567899999999999999999998887644 22333334445555555
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC
Q 035828 491 KSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY 533 (781)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 533 (781)
.++-+.....|- ++.....+.-.|+++++.++|.+..
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555444444431 2333444555677777777665443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.27 E-value=0.19 Score=40.04 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=40.8
Q ss_pred CCcchHHHHHHHhhhcCCh---HHHHHHHHhC-CCCCC--cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 689 PETEHHVCIVDMLGRSGKL---QEAYEFIKNL-PIQPK--PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 689 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
|++.+--.+++++.++.+. .+++.++++. +..|. ...+--+.-++.+.|+++.|.+..+.+++..|++..+..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4444444555555555533 2344555443 22231 2234444555667777777777777777777777666554
Q ss_pred HH
Q 035828 763 LS 764 (781)
Q Consensus 763 l~ 764 (781)
..
T Consensus 118 k~ 119 (134)
T 3o48_A 118 KS 119 (134)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.12 E-value=3.7 Score=34.99 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=35.3
Q ss_pred HHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc
Q 035828 515 MYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL 563 (781)
Q Consensus 515 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 563 (781)
....+|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 345678888888887766 34567888888888888888887777765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.93 E-value=0.6 Score=37.80 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=41.5
Q ss_pred CCCcchHHHHHHHhhhcCChH---HHHHHHHhC-CCCCC--cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHH
Q 035828 688 RPETEHHVCIVDMLGRSGKLQ---EAYEFIKNL-PIQPK--PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 688 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
.|+..+--.+.+++.++.+.+ +++.++++. ...|. ....-.+.-++.+.|++++|.+..+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 344445555555555555333 344455444 12221 122334444566777777777777777777777766655
Q ss_pred HHH
Q 035828 762 SLS 764 (781)
Q Consensus 762 ~l~ 764 (781)
+..
T Consensus 116 Lk~ 118 (144)
T 1y8m_A 116 LKS 118 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.52 Score=39.38 Aligned_cols=120 Identities=22% Similarity=0.164 Sum_probs=59.8
Q ss_pred CCCCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-------chHHHHHHHhhhcCChHHHHHHHHhC--
Q 035828 649 SGIRPTKS--SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-------EHHVCIVDMLGRSGKLQEAYEFIKNL-- 717 (781)
Q Consensus 649 ~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-- 717 (781)
.|+.|... ++..=+..+...|.++.|.-+...++...+.+|+. .++..+++++...|++.+|...++++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45566443 33334556666777777777766654443333431 35566777777777777777776653
Q ss_pred --CCCCCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 718 --PIQPKPG-VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 718 --~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.-+... ....+. ...... .-.. .+.+.+.-+.++..|.+.|++++|+.++
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~L 145 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAIL 145 (167)
T ss_dssp HHHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcCCCcccccc----ccCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 1111110 000000 000000 0001 1334456788999999999999999875
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.41 E-value=0.81 Score=36.37 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=66.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHH---HHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCC
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDE---GLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGK 706 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 706 (781)
.......+.+-|.+....|. |+..+-..+..++.+..+... ++.+++++.+. -.|. ......|.-++.+.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 33445556666666665554 666666667778888775555 99999988754 2252 4677788889999999
Q ss_pred hHHHHHHHHhC-CCCCCcchHHH
Q 035828 707 LQEAYEFIKNL-PIQPKPGVWGA 728 (781)
Q Consensus 707 ~~~A~~~~~~~-~~~p~~~~~~~ 728 (781)
|++|.+.++.+ ...|+..-...
T Consensus 90 Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999887 56776543333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.05 E-value=13 Score=35.22 Aligned_cols=168 Identities=7% Similarity=0.011 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCCChhhHHHHHH
Q 035828 404 IGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKT----FKSMTQQQNASPDSVTLVNVIS 479 (781)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~~~~~p~~~~~~~ll~ 479 (781)
..|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ .+-..+.+ .+++..+...++.
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g------------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG------------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Confidence 45667777888899999999887655 4456677886665554 44444555 8889888888888
Q ss_pred HhcCccchH-HHHHHHHHHHH----hcC--CCChHHHHHHHHHHHhcCChHHHHHHhhhcCCCChhhHHHHHHHHHhC--
Q 035828 480 ACGNLELAF-EGKSLHGLALK----SLM--GLDTRVQNALITMYGRCRDIKSASTVFESCYNCNLCTWNCMISAFSQN-- 550 (781)
Q Consensus 480 ~~~~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-- 550 (781)
.+......+ .-.++.+.+++ .|- .-++.....+...|.+.|++.+|..-|=.....+...+..++.-+...
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcC
Confidence 776543222 22344444443 222 236778888889999999999998876532222344444444333333
Q ss_pred -CChhHHHHHHhhcCCCCCHhHHHHHHHHhcccCchHHHHHHHHHHH
Q 035828 551 -KAEVRALELFRHLEFEPNEISIVSILSACTQLGVLRHGKQIHGHVF 596 (781)
Q Consensus 551 -~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 596 (781)
|...++- ....-+++ -+...+++..|..+++...
T Consensus 181 ~~~~~e~d-----------lf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 181 DIEDSTVA-----------EFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCCHHHHH-----------HHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred CCCcchHH-----------HHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 4433321 11111222 2335678888888877654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.40 E-value=15 Score=35.04 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=78.1
Q ss_pred chhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHH----HHHHhhcCCCCCcchHHHHHHHh
Q 035828 109 SLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLY----FREMGWSGEQADNVSLSSAVAAS 184 (781)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~ 184 (781)
++|.++..-|.+.+++++|.+++- .-...+.+.|....+-++ ++.+.+.++++|..+...++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456677777888899999998862 223445667777666554 46677789999998888888888
Q ss_pred hccCChh-----HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhc
Q 035828 185 ACLGELS-----YGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFW 235 (781)
Q Consensus 185 ~~~~~~~-----~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 235 (781)
......+ -......|-.+.|..+..+......+-..|.+.+++.+|..-|-
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 7665422 12334445555553333346666777777888888888877663
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.31 E-value=2.2 Score=35.70 Aligned_cols=65 Identities=9% Similarity=0.004 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHhcccCcHHHHHHHHHHhHHHcC
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNS-GIRPTK-------SSVISLLSACSHSGLVDEGLQYYNNMLEEYD 686 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 686 (781)
++-.-+..+...+.++.|+-+.+-+... +..|+. .++..+..++...|++.+|...|++.++...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 3445566778889999998777765432 123332 2667778899999999999999999766533
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=88.05 E-value=17 Score=33.88 Aligned_cols=210 Identities=8% Similarity=-0.063 Sum_probs=105.9
Q ss_pred hhHHHHHhhcCCchhHHHHhhhhcCCCcc---hhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChh---hHHHHHHHHh
Q 035828 11 TSLLTAYSNVSYFESSLALFYETCNKDVV---TWNAMITACVENRCVVMGLHFFGEMVEEGIRFDST---TLLIIVSALT 84 (781)
Q Consensus 11 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~ 84 (781)
+..+....+.|+++....+++....++.. .-.+.+...+..|+.+ +++.+.+.|..++.. -.+.+ ...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPF-LLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHH-HHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHH-HHHH
Confidence 34566667788988888888875544432 1234555666667654 445555666555432 22233 3333
Q ss_pred ccCcccchhHHHHHHHHhcCCCCcch--hhhHHHHhhccCChhhHHHHhccCCCCCee-------------ehHHHHHHH
Q 035828 85 QMNCLKQGRVVHCLSIKAGMIADSSL--CNVFVNMYAKCGDLNSSECTFSGMHCADTV-------------SWNTIMSGC 149 (781)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~li~~~ 149 (781)
..|+ .++++.+.+.|..++... -.+.+...++.|+.+-+..+++.-..++.. ..+. +...
T Consensus 81 ~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~-L~~A 155 (285)
T 1wdy_A 81 IAGS----VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA-LMDA 155 (285)
T ss_dssp HHTC----HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCH-HHHH
T ss_pred HcCC----HHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcH-HHHH
Confidence 4444 456666667776655322 234455566778887777777654433221 2233 3333
Q ss_pred hhCCChhhHHHHHHHHhhc-CCCCCcc---hHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcC
Q 035828 150 LHNNYPEKCLLYFREMGWS-GEQADNV---SLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCG 225 (781)
Q Consensus 150 ~~~g~~~~a~~~~~~m~~~-g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 225 (781)
+..|+.+-+. .+.+. |..++.. -...+. ..+..++......+.+.+.+.|..++.......+.+...++.|
T Consensus 156 ~~~~~~~~v~----~Ll~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 156 AEKGHVEVLK----ILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHTCHHHHH----HHHHTSCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHcCCHHHHH----HHHHhcCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 4455554333 33333 4444322 122222 2233444444455666666666544311111223344444556
Q ss_pred ChhHHHHHhc
Q 035828 226 DIEAAERAFW 235 (781)
Q Consensus 226 ~~~~a~~~~~ 235 (781)
+.+-+..+++
T Consensus 231 ~~~~v~~Ll~ 240 (285)
T 1wdy_A 231 HLGLVQRLLE 240 (285)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 6665555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.01 E-value=6.1 Score=32.37 Aligned_cols=102 Identities=11% Similarity=0.114 Sum_probs=51.3
Q ss_pred CCChhhHHHHHHHHHhCCCh------hHHHHHHhhc--CCCCCHh----HHHHHHH---HhcccCchHHHHHHHHHHHHh
Q 035828 534 NCNLCTWNCMISAFSQNKAE------VRALELFRHL--EFEPNEI----SIVSILS---ACTQLGVLRHGKQIHGHVFHL 598 (781)
Q Consensus 534 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~--~~~p~~~----~~~~ll~---~~~~~~~~~~a~~~~~~~~~~ 598 (781)
..|..+|-..+...-+.|++ ++..+.|++. .+.|+.. .|.-|.- .+...+++++|.++|+.+++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44555666666666666776 6666777766 3555421 1111100 011225566666666665543
Q ss_pred CCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 035828 599 GFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIR 652 (781)
Q Consensus 599 ~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 652 (781)
+-.. .. .|-.....-.+.|+...|.+++.+....+.+
T Consensus 90 hKkF-AK----------------iwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AF----------------VHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HH----------------HHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 1111 11 3444444455566666666666666554433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.97 E-value=18 Score=34.21 Aligned_cols=116 Identities=15% Similarity=0.036 Sum_probs=78.0
Q ss_pred chhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHH----HHHHHhhcCCCCCcchHHHHHHHh
Q 035828 109 SLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLL----YFREMGWSGEQADNVSLSSAVAAS 184 (781)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~t~~~ll~~~ 184 (781)
+.|.++..-|.+.+++++|.+++. .-...+.+.|....|-+ +++...+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~-----------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELIS-----------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456677777888899999888863 22334566777766655 466677788999988888888877
Q ss_pred hccCCh-----hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhc
Q 035828 185 ACLGEL-----SYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFW 235 (781)
Q Consensus 185 ~~~~~~-----~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 235 (781)
...... +-......+-.+.|.....++.....+-..|.+.|++.+|+.-|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 664322 223344445545544333446777888888888888888877554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.50 E-value=13 Score=37.70 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCH---HHHHHHHHHhcccCcHHHHHHHHHHhHHHc-CC--CCC--cc
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNS--GIRPTK---SSVISLLSACSHSGLVDEGLQYYNNMLEEY-DV--RPE--TE 692 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~--~p~--~~ 692 (781)
...|...+...|++.+|.+++..+... |..+.. ..+..-++.|...+|+..|..++.++.... .. .|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356778888888999998888887642 322221 255556677888888888888888864321 11 222 35
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 693 HHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
.|...+..+...++|.+|-+.|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6677788888888888887766554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.30 E-value=37 Score=36.01 Aligned_cols=133 Identities=10% Similarity=-0.054 Sum_probs=61.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHH
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQE 709 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 709 (781)
..+.|+++.|...|+.|..... ......--+.+++...|+.++|..+|+.+.+ + ...|..+... +.|..-.
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~-----~-~~fYg~lAa~--~Lg~~~~ 365 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ-----Q-RGFYPMVAAQ--RIGEEYE 365 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----S-CSHHHHHHHH--HTTCCCC
T ss_pred HHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc-----C-CChHHHHHHH--HcCCCCC
Confidence 3455777777777776654211 1222333344555666777777777766642 1 1233333211 1111000
Q ss_pred HHHHHHhCCCCCC-cc-----hHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHH
Q 035828 710 AYEFIKNLPIQPK-PG-----VWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 710 A~~~~~~~~~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
+......+. .. ..-.-+..+...|....|...+..+.+..+ +.-...++......|.++.++
T Consensus 366 ----~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~~~v 433 (618)
T 1qsa_A 366 ----LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSV 433 (618)
T ss_dssp ----CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred ----CCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChHHHH
Confidence 000000110 00 011123345667888888777777665422 233445555555666655544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.17 E-value=13 Score=43.28 Aligned_cols=127 Identities=8% Similarity=-0.019 Sum_probs=68.5
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 035828 572 IVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGI 651 (781)
Q Consensus 572 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 651 (781)
|..++..+.+.+.++.+.++-...++.....+... ....|..+...+...|++++|...+-.+.....
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~------------~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDL------------SIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHH------------HHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhh------------HHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 45566666666777777766665555332222110 011467777788888888888888877766433
Q ss_pred CCCHHHHHHHHHHhcccCcH------------HHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHH
Q 035828 652 RPTKSSVISLLSACSHSGLV------------DEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEF 713 (781)
Q Consensus 652 ~p~~~~~~~l~~~~~~~~~~------------~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 713 (781)
+ ...+..|+..++..|.. ++..+++..-.+. ...++ +..|.-|-.-+...|++..|-.+
T Consensus 970 r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~-~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQ-MINVESQPCWYNILFSWRYKHQNYRDAAAI 1042 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHH-HHHHCCSTHHHHHHHHHHHHHHTTSCHHHH
T ss_pred H--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHh-CCccccCCCHHHHhHhhhhccCChHHHHHH
Confidence 3 34555566555544433 3344444332221 10122 23344444445667777776554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.13 E-value=5.9 Score=29.64 Aligned_cols=72 Identities=11% Similarity=0.007 Sum_probs=46.3
Q ss_pred hhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC--CCCeeeHHHHHHHHHHHHHHhccc
Q 035828 294 LREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP--MNDLVSWNSMISGLFKEMLYLCSQ 365 (781)
Q Consensus 294 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~ 365 (781)
.-+.++-+..+....+-|++.+..+.+++|.+.+|+..|.++|+.++. ......|.-+++.+-..+...|+.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElkPtl~ELGI~ 99 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGIS 99 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhHHHHhCCC
Confidence 334555555566666778888888888888888888888888877655 122334666666555555555543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.66 E-value=5.4 Score=36.52 Aligned_cols=122 Identities=15% Similarity=0.054 Sum_probs=80.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChH
Q 035828 629 AYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQ 708 (781)
Q Consensus 629 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 708 (781)
.+.+.|+.++|++....-.+. -+-|...-..|+.-+|-.|++++|.+-++...+. .|+...-..+.+.+.++ +
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---E 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---A 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---H
T ss_pred HHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---H
Confidence 356789999999988887774 2446777788889999999999999999988754 77743322222222222 1
Q ss_pred HHH-HHHHhCCCCC----CcchH-HHHHHHHH--hcCCcHHHHHHHHHHhccCCCCCc
Q 035828 709 EAY-EFIKNLPIQP----KPGVW-GAMLSACS--HHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 709 ~A~-~~~~~~~~~p----~~~~~-~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
.+. ++|.- +..| .+..| ..++.+.. ..|+.++|..+-+++++.-|..+.
T Consensus 79 ~~R~~vfaG-~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 QARKDFAQG-AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHTTS-CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 121 22321 1222 22223 44555544 479999999999999998877654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.37 E-value=6.2 Score=29.54 Aligned_cols=73 Identities=14% Similarity=0.252 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHH
Q 035828 635 KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFI 714 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 714 (781)
+.-+..+-++.+-...+.|++....+.++||.+.+|+..|..+++.+..+ ..+...+|..+++ +-...+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq---------ElkPtl 93 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ---------ELRPTL 93 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH---------HHhhHH
Confidence 44556677777777789999999999999999999999999999998765 3344566777764 334455
Q ss_pred HhCC
Q 035828 715 KNLP 718 (781)
Q Consensus 715 ~~~~ 718 (781)
+++|
T Consensus 94 ~ELG 97 (109)
T 1v54_E 94 NELG 97 (109)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 5554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=85.24 E-value=52 Score=36.67 Aligned_cols=114 Identities=11% Similarity=0.011 Sum_probs=54.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH-HHH---HHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCCh
Q 035828 632 YHGKGWEAIELFHEMCNSGIRPTKS-SVI---SLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKL 707 (781)
Q Consensus 632 ~~~~~~~A~~~~~~m~~~g~~p~~~-~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 707 (781)
..|+.+.+..+++.+... .+.. -|. ++.-+|+-.|+.....++++.+... ...+..-...+.-++...|+.
T Consensus 536 ~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSC
T ss_pred hCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCH
Confidence 556666666666666652 2222 222 2334566667765555566666432 112222223333344445555
Q ss_pred HHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCc-HHHHHHHHHHh
Q 035828 708 QEAYEFIKNLP--IQPKPGVWGAMLSACSHHGDT-KMGKQVAELLF 750 (781)
Q Consensus 708 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 750 (781)
+.+.++++.+. ..|.+..-..+.-+....|+. .++...+..+.
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 54555554432 233333333333333344443 56666666664
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=85.19 E-value=18 Score=31.56 Aligned_cols=180 Identities=9% Similarity=-0.093 Sum_probs=104.4
Q ss_pred HHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCC
Q 035828 28 ALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIAD 107 (781)
Q Consensus 28 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 107 (781)
.+++.+..+|...-...+.++.+.+.......+.+. .. .++...-...+.++...++.+ +...+..+.. .++
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~-l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~ 89 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKA-LK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DED 89 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHH-TT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHH-Hc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCC
Confidence 344445566666666667777776664433333333 32 345556666666776666543 3333333322 466
Q ss_pred cchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhcc
Q 035828 108 SSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACL 187 (781)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 187 (781)
+.+-...+.++.+.++.+....+.+.+..++...-...+.++.+.++.+ +...+..+.. .++...-...+.++...
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 6777777788888777766666666666677666666677777766644 4444444443 25666667777777777
Q ss_pred CChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcC
Q 035828 188 GELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCG 225 (781)
Q Consensus 188 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 225 (781)
|+.+....+.. +... .+ ..+....+.++.+.+
T Consensus 166 ~~~~~~~~L~~-~l~d---~~--~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 166 GGERVRAAMEK-LAET---GT--GFARKVAVNYLETHK 197 (201)
T ss_dssp CSHHHHHHHHH-HHHH---CC--HHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHH-HHhC---CC--HHHHHHHHHHHHHHH
Confidence 76554444433 3333 12 556666666665543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=84.64 E-value=18 Score=31.96 Aligned_cols=188 Identities=9% Similarity=-0.124 Sum_probs=118.3
Q ss_pred CCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhccCcccchhHHHHHHH
Q 035828 21 SYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSI 100 (781)
Q Consensus 21 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 100 (781)
++.+....+.+.+..++...-...+..+.+.+.... ...+..+.. .++...-...+.++.+.++.+ +...+..+.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l 90 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKAL 90 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHT
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHH
Confidence 344444555555677787777778888888877544 444444443 356666677777887777543 333333333
Q ss_pred HhcCCCCcchhhhHHHHhhccCChhhHHHHhccCCCCCeeehHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHH
Q 035828 101 KAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGMHCADTVSWNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSA 180 (781)
Q Consensus 101 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 180 (781)
-.++..+-...+.++.+.++.+....+.+.+..++...-...+.++...|+.+ +...+..+.. .++...-...
T Consensus 91 ---~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 91 ---KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp ---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred ---cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 35677788888888888888777767777677778777777777777777654 4444545543 3566777778
Q ss_pred HHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCC
Q 035828 181 VAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGD 226 (781)
Q Consensus 181 l~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 226 (781)
+.++...++.+... .+..+.+. ++..+....+.++.+.+.
T Consensus 164 ~~aL~~~~~~~~~~-~L~~~l~d-----~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 164 ADALGEIGGERVRA-AMEKLAET-----GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHCSHHHHH-HHHHHHHH-----CCHHHHHHHHHHHHC---
T ss_pred HHHHHHhCchhHHH-HHHHHHhC-----CCHHHHHHHHHHHHhcCC
Confidence 88888888754433 34444433 225666666766666543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.22 E-value=38 Score=34.30 Aligned_cols=258 Identities=10% Similarity=0.005 Sum_probs=125.6
Q ss_pred cCCchhhHHHHHHHHhc-----CCCCChhhHHHHHHHHhccCcccchhHHHHHHHHhcCCCCcchhhhHHHHh----hcc
Q 035828 51 NRCVVMGLHFFGEMVEE-----GIRFDSTTLLIIVSALTQMNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMY----AKC 121 (781)
Q Consensus 51 ~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 121 (781)
.|++..|++-+-.+.+. +..........++..|...++++...+.+..+.+..-.. ......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 37788888877666542 234456678888899999999988877777665442221 22223333322 222
Q ss_pred CChh--hHHHHhccCCC-CCeee---------hHHHHHHHhhCCChhhHHHHHHHHhhcCCCCCcchHHHHHHHhhccCC
Q 035828 122 GDLN--SSECTFSGMHC-ADTVS---------WNTIMSGCLHNNYPEKCLLYFREMGWSGEQADNVSLSSAVAASACLGE 189 (781)
Q Consensus 122 ~~~~--~a~~~~~~~~~-~~~~~---------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 189 (781)
...+ .-..+.+.... .+-.. ...|...+...|++.+|.+++..+...-...+.....
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~k----------- 176 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEK----------- 176 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHH-----------
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHH-----------
Confidence 2222 22223332221 11111 2345566777788888888777765431111111000
Q ss_pred hhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC--------CC--CcccHHHHHHHHHhCCChh
Q 035828 190 LSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMT--------CK--DVVSWNAIIDGFALNGKFE 259 (781)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--------~~--~~~~~~~li~~~~~~~~~~ 259 (781)
...+..-+..|...+++..|..++.++. .| -..-|...+..+...+++.
T Consensus 177 ---------------------ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~ 235 (445)
T 4b4t_P 177 ---------------------IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYL 235 (445)
T ss_dssp ---------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHH
T ss_pred ---------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 2233333444444444444444443331 00 0122444555556666666
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHH----HHhcccchhhhhhHHHHHHHhcCCCChHHHHHHHHHHHhc--CCHHHHH
Q 035828 260 EAFDLLHEMQLMRSVEPDIATVVTLIS----LCADSLLLREGRSVHGYAIRRLLGYDLLMMNSLMDFYSKS--NSLSKAE 333 (781)
Q Consensus 260 ~a~~~~~~m~~~~~~~pd~~t~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~ 333 (781)
+|...|.+.-....+.-|...+...+. +..-.+....-..+.........-++...+..++.+|... .+++.+.
T Consensus 236 ~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~ 315 (445)
T 4b4t_P 236 EVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQ 315 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHH
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHH
Confidence 666665555432112223222222111 1111121122223333333333334667788888888764 4677777
Q ss_pred HHHHhhCC
Q 035828 334 LLFNAIAP 341 (781)
Q Consensus 334 ~~~~~~~~ 341 (781)
..|.....
T Consensus 316 ~~~~~~L~ 323 (445)
T 4b4t_P 316 KTYEPVLN 323 (445)
T ss_dssp HHTCSSTT
T ss_pred HHHHHHhc
Confidence 77765544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.19 E-value=3.5 Score=41.14 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH----HcCCCCCcch
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLE----EYDVRPETEH 693 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 693 (781)
+...++..+...|++++|+..+..+... .+-+...+..++.++.+.|+..+|++.|+...+ ++|+.|++.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455677788899999999999988763 234777999999999999999999999988644 4688888654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.82 E-value=7.8 Score=30.95 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCc
Q 035828 650 GIRPTKSSVISLLSACSHSG---LVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKP 723 (781)
Q Consensus 650 g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 723 (781)
+-.|+..|--.+..++.+.. +..+++.+++++.+. .|. ...+-.|.-++.+.|++++|.+..+.+ ...|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 34556655555666666654 566899999999876 463 567778899999999999999999987 778876
Q ss_pred chHHHH
Q 035828 724 GVWGAM 729 (781)
Q Consensus 724 ~~~~~l 729 (781)
.-...|
T Consensus 112 ~QA~~L 117 (134)
T 3o48_A 112 KQVGAL 117 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.81 E-value=7.1 Score=42.35 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=44.1
Q ss_pred HHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCC
Q 035828 663 SACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLP 718 (781)
Q Consensus 663 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (781)
.-|...|+++.|+++-++.... .|+ -.+|..|+.+|.+.|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456678999999999988754 777 4899999999999999999998888874
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.42 E-value=12 Score=30.33 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHhcccC---cHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcch
Q 035828 652 RPTKSSVISLLSACSHSG---LVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGV 725 (781)
Q Consensus 652 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 725 (781)
.|+..+-..+..++.+.. +..+++.+++++.+. .|. ......|.-++.+.|+|++|.+..+.+ ...|+..-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 566666666666776655 566899999999876 553 467778889999999999999999887 67787654
Q ss_pred HHHH
Q 035828 726 WGAM 729 (781)
Q Consensus 726 ~~~l 729 (781)
...|
T Consensus 113 A~~L 116 (144)
T 1y8m_A 113 VGAL 116 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.73 E-value=11 Score=30.00 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC--CCCeeeHHHHHHHHHHHHHHhccc
Q 035828 296 EGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP--MNDLVSWNSMISGLFKEMLYLCSQ 365 (781)
Q Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~ 365 (781)
+..+-++.+....+-|++.+..+.+.+|.+.+|+..|.++|+.++. .+....|.-+++.+-..+.+.|+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqElkPtl~ELGI~ 142 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGIS 142 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHhhHHHHhCCC
Confidence 3444455555566778888888888888888888888888877765 223334666666555555555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 781 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-09 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (135), Expect = 5e-09
Identities = 45/375 (12%), Positives = 104/375 (27%), Gaps = 24/375 (6%)
Query: 409 LMHMYINCGDLVAAFSLLQRI--SHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQN 466
L H GD AA ++ +T ++ Q + +Q
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 467 ASPDS-VTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSA 525
++ L NV G L+ A E + + AL+ +++
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 526 STVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHLEFEPNEISIVSILSACTQLGVL 585
+ + + + + + E + +E +PN S L
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV------ 178
Query: 586 RHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHE 645
+ + N A+ ++ + A+ +
Sbjct: 179 --------FNAQGEIWLAIHHFEKAVTLDPNFLD--AYINLGNVLKEARIFDRAVAAYLR 228
Query: 646 MCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSG 705
+ +L GL+D + Y +E P+ + + + L G
Sbjct: 229 ALSLSPNHAVVH-GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKEKG 285
Query: 706 KLQEAYEFIKNLPIQPKPGVWGAMLSACSHH--GDTKMGKQVAELLFKLEPENVGYYISL 763
+ EA + A G+ + ++ ++ PE + +L
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345
Query: 764 SNMYVALGRWKDAVE 778
+++ G+ ++A+
Sbjct: 346 ASVLQQQGKLQEALM 360
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 781 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.83 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.89 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.8 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.78 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.77 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.71 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.64 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.55 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.53 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.51 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.5 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.44 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.37 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.16 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.11 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.07 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.02 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.99 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.98 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.95 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.86 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.84 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.76 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.74 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.67 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.63 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.61 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.57 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.53 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.49 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.49 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.46 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.4 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.31 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.23 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.13 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.1 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.1 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.82 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.67 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.08 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.06 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.77 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.43 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.16 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.21 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 89.54 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.15 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.17 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.2e-19 Score=183.64 Aligned_cols=239 Identities=13% Similarity=0.201 Sum_probs=182.7
Q ss_pred HHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-CCCCC-HhHHHHHHHHhcccCchH
Q 035828 512 LITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL-EFEPN-EISIVSILSACTQLGVLR 586 (781)
Q Consensus 512 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~ 586 (781)
........+....+...+.... ..+...+..+...+...|+.++|...+++. ...|+ ...+..+...+...|+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 220 (388)
T d1w3ba_ 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT
T ss_pred ccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHH
Confidence 3334444455555555444333 223345555666666777777777777666 44553 445666666777777777
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHh
Q 035828 587 HGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSAC 665 (781)
Q Consensus 587 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~ 665 (781)
+|...++.....+... ...+..+...+...|++++|++.|++..+ +.| +..++..+...+
T Consensus 221 ~A~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 281 (388)
T d1w3ba_ 221 RAVAAYLRALSLSPNH-----------------AVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhhhH-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 7777777766654332 22566777888899999999999999988 456 456888899999
Q ss_pred cccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHH
Q 035828 666 SHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMG 742 (781)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 742 (781)
...|++++|.+.++..... .|+ ...+..+...+.+.|++++|++.++++ ...|+ ...+..++..+...|++++|
T Consensus 282 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 358 (388)
T d1w3ba_ 282 KEKGSVAEAEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHcCCHHHHHHHHHhhhcc---CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998765 444 578889999999999999999999986 56665 55788899999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 743 KQVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 743 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
+..++++++++|+++.++..||.+|.+.|+
T Consensus 359 ~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 359 LMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=4.3e-18 Score=173.83 Aligned_cols=347 Identities=12% Similarity=0.059 Sum_probs=270.6
Q ss_pred HHHHHhcCCHHHHHHHHHhhcC-CC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccch
Q 035828 410 MHMYINCGDLVAAFSLLQRISH-NS-DTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELA 487 (781)
Q Consensus 410 i~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 487 (781)
-..+.+.|++++|.+.++++.. .| +...+..+...|.+.|++++|+..|++..+.. +-+...+..+...+...|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhccc
Confidence 3456778889999888887633 35 46677888888889999999999999888753 22345677777888888999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCCChhHHHHHHhhc-
Q 035828 488 FEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNKAEVRALELFRHL- 563 (781)
Q Consensus 488 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 563 (781)
++|...+......... +..............+....+........ .................+....+...+.+.
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 9999988888776543 33333344444444455544444443322 334445556666777888888888888887
Q ss_pred CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHH
Q 035828 564 EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIEL 642 (781)
Q Consensus 564 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 642 (781)
...| +...+..+...+...|+++.|...++...+.. |+ +..+|..+...+...|++++|+..
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~---------------~~~~~~~l~~~~~~~~~~~~A~~~ 225 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN---------------FLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT---------------CHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC--cc---------------cHHHHHHHhhhhhccccHHHHHHH
Confidence 5555 45666777778889999999999999887754 32 233678888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-C-C
Q 035828 643 FHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-P-I 719 (781)
Q Consensus 643 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~ 719 (781)
+++....+ ..+...+..+...+.+.|++++|...++++++. .|+ ...+..++..+...|++++|++.++.. . .
T Consensus 226 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 301 (388)
T d1w3ba_ 226 YLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 99998753 345667888889999999999999999998754 676 578999999999999999999999877 2 4
Q ss_pred CCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 720 QPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 720 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.+...+..+...+...|++++|+..++++++..|+++.++..+|.+|.+.|++++|++.+
T Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 362 (388)
T d1w3ba_ 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566688888889999999999999999999999999999999999999999999998865
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.4e-13 Score=132.89 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=57.6
Q ss_pred CcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHH
Q 035828 669 GLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVA 746 (781)
Q Consensus 669 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 746 (781)
+...+|.+.+++.++.....++..++..+...+...|++++|++.+++. ...| +...|..++..+...|++++|++.+
T Consensus 150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHH
Confidence 3445555555555443111222344455555555555555555555544 2223 2334555555555555555555555
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 747 ELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 747 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+++++++|+++.++..+|.+|...|++++|++.
T Consensus 230 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 262 (323)
T d1fcha_ 230 RRALELQPGYIRSRYNLGISCINLGAHREAVEH 262 (323)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555555555555555555555544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=5.5e-13 Score=131.29 Aligned_cols=147 Identities=15% Similarity=0.089 Sum_probs=117.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCC
Q 035828 629 AYGYHGKGWEAIELFHEMCNSG-IRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGK 706 (781)
Q Consensus 629 ~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 706 (781)
.+...+.+.+|.+.+.+..+.. -.++...+..+...+...|++++|...+++.++. .|+ ...|..++..|.+.|+
T Consensus 145 ~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~ 221 (323)
T d1fcha_ 145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQ 221 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhccccccc
Confidence 3445567888999988877632 2335667888888999999999999999999865 666 5788999999999999
Q ss_pred hHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch-----------HHHHHHHHHhcCCh
Q 035828 707 LQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY-----------YISLSNMYVALGRW 773 (781)
Q Consensus 707 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~ 773 (781)
+++|++.++++ ...|+ ...+..++.++.+.|++++|+..+++++++.|+++.. +..++.++...|+.
T Consensus 222 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~ 301 (323)
T d1fcha_ 222 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301 (323)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred chhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999886 44554 5578899999999999999999999999998887764 45577788888887
Q ss_pred hhHHh
Q 035828 774 KDAVE 778 (781)
Q Consensus 774 ~~A~~ 778 (781)
+.+..
T Consensus 302 d~~~~ 306 (323)
T d1fcha_ 302 DAYGA 306 (323)
T ss_dssp GGHHH
T ss_pred HHHHH
Confidence 76543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.4e-09 Score=105.01 Aligned_cols=217 Identities=12% Similarity=0.151 Sum_probs=157.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc-CCCCCHh-HHHHHHHHhcccC-chHHHHHHHHHHHHhCCCCCchHHHHHHHhhh
Q 035828 539 TWNCMISAFSQNKAEVRALELFRHL-EFEPNEI-SIVSILSACTQLG-VLRHGKQIHGHVFHLGFQENSFISSALLDMYS 615 (781)
Q Consensus 539 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 615 (781)
.++.+...+.+.+.+++|+++++++ .+.|+.. .|+....++...| ++++|...++..++....
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-------------- 110 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-------------- 110 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh--------------
Confidence 4555555666777777777777777 6777544 4455555555554 477777777777665443
Q ss_pred cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cch
Q 035828 616 NCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEH 693 (781)
Q Consensus 616 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~ 693 (781)
+..+|+.+...+...|++++|++.++++.+ ..| +...|..+...+...|++++|.+.++++++. .|+ ...
T Consensus 111 ---~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a 182 (315)
T d2h6fa1 111 ---NYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSV 182 (315)
T ss_dssp ---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHH
T ss_pred ---hhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHH
Confidence 334789999999999999999999999998 556 5679999999999999999999999999865 776 567
Q ss_pred HHHHHHHhhhcCC------hHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCC--chHHHH
Q 035828 694 HVCIVDMLGRSGK------LQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENV--GYYISL 763 (781)
Q Consensus 694 ~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l 763 (781)
|..+..++.+.++ +++|++.+.++ ...|+ ...|..+...+ .....+++...++.+.++.|+.. ..+..+
T Consensus 183 ~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 261 (315)
T d2h6fa1 183 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSHSSPYLIAFL 261 (315)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-TTTCGGGCHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHH-HhcChHHHHHHHHHHHHhCCCcCCHHHHHHH
Confidence 8877777666555 57888877765 45564 45566665554 44556889999999998887644 445667
Q ss_pred HHHHHhc--CChhhHHh
Q 035828 764 SNMYVAL--GRWKDAVE 778 (781)
Q Consensus 764 ~~~~~~~--g~~~~A~~ 778 (781)
+.+|... ++.+.+.+
T Consensus 262 ~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 262 VDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHhcCHHHHHH
Confidence 7777654 55555554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=4.8e-08 Score=96.71 Aligned_cols=171 Identities=8% Similarity=-0.074 Sum_probs=103.4
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC--
Q 035828 572 IVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS-- 649 (781)
Q Consensus 572 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-- 649 (781)
+..+...+...|+++.+...+.............. ...++..+...+...++..++...+.+....
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 203 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ------------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 203 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG------------GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33444455666777777777766655433322211 1225666667777788888888777665431
Q ss_pred CCCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC--cchHHHHHHHhhhcCChHHHHHHHHhC------
Q 035828 650 GIRPT----KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE--TEHHVCIVDMLGRSGKLQEAYEFIKNL------ 717 (781)
Q Consensus 650 g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~------ 717 (781)
..... ...+..+...+...|++++|...+++..+.....+. ...+..+...+...|++++|.+.++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 283 (366)
T d1hz4a_ 204 NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 283 (366)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 11111 123455555666778888888888776533111111 234455777788888888888777654
Q ss_pred -CCCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCC
Q 035828 718 -PIQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 718 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 754 (781)
+..|+ ...+..+...+...|++++|.+.+++++++.+
T Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 23332 33566677777788888888888888887754
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=5.6e-10 Score=109.64 Aligned_cols=265 Identities=12% Similarity=0.013 Sum_probs=157.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCChhhH----HHHHHHhc-------CccchHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 035828 448 NGHFQEAIKTFKSMTQQQNASPDSVTL----VNVISACG-------NLELAFEGKSLHGLALKSLMGLDTRVQNALITMY 516 (781)
Q Consensus 448 ~~~~~~A~~~~~~m~~~~~~~p~~~~~----~~ll~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 516 (781)
.+..++|++++++..+. .|+..+. ..++..+. ..+.++++...++.+.+... -+...+..+..++
T Consensus 42 ~~~~~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~~~~~~~~ 117 (334)
T d1dcea1 42 GELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLL 117 (334)
T ss_dssp TCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHhhHHH
Confidence 33446777777777663 3665432 11222222 22334455555555544331 1344444444444
Q ss_pred HhcC--ChHHHHHHhhhcC---CCChhhHHH-HHHHHHhCCChhHHHHHHhhc-CCCCCHhHHHHHHHHhcccCchHHHH
Q 035828 517 GRCR--DIKSASTVFESCY---NCNLCTWNC-MISAFSQNKAEVRALELFRHL-EFEPNEISIVSILSACTQLGVLRHGK 589 (781)
Q Consensus 517 ~~~g--~~~~A~~~~~~~~---~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~ 589 (781)
...+ ++++|...++.+. .++...|.. ....+...+..++|+..+++. ...|+..
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~------------------- 178 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY------------------- 178 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH-------------------
T ss_pred HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH-------------------
Confidence 4433 3556666665543 223333332 234455566666666666666 4555322
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccC
Q 035828 590 QIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSG 669 (781)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 669 (781)
.+|+.+...+...|++++|...+....+ +.|+.. .+...+...+
T Consensus 179 -------------------------------~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~ 222 (334)
T d1dcea1 179 -------------------------------SSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTD 222 (334)
T ss_dssp -------------------------------HHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHC
T ss_pred -------------------------------HHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhc
Confidence 2455566666666776666555444433 222221 1222333445
Q ss_pred cHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHH
Q 035828 670 LVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAE 747 (781)
Q Consensus 670 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 747 (781)
..+++...+...... .+++...+..++..+...|++++|.+.+.+. ...| +...+..++..+...|++++|...++
T Consensus 223 ~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~ 300 (334)
T d1dcea1 223 PNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 300 (334)
T ss_dssp SSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566777777776543 2333566777888888899999999988776 5555 45577888888999999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHHhcCCh
Q 035828 748 LLFKLEPENVGYYISLSNMYVALGRW 773 (781)
Q Consensus 748 ~~~~~~p~~~~~~~~l~~~~~~~g~~ 773 (781)
++.+++|.++..|..|+..+.-..++
T Consensus 301 ~ai~ldP~~~~y~~~L~~~~~~e~~~ 326 (334)
T d1dcea1 301 TLKAVDPMRAAYLDDLRSKFLLENSV 326 (334)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcccHHHHHHHHHHHhHhhHH
Confidence 99999999999999999888754333
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.3e-08 Score=97.92 Aligned_cols=222 Identities=11% Similarity=0.104 Sum_probs=156.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhcC---CCChhhHHHHHHHHHhCC-ChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcc
Q 035828 508 VQNALITMYGRCRDIKSASTVFESCY---NCNLCTWNCMISAFSQNK-AEVRALELFRHL-EFEP-NEISIVSILSACTQ 581 (781)
Q Consensus 508 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 581 (781)
.++-+-..+.+.+..++|+++++++. +.+..+|+....++...| ++++|+..+++. ...| +..+|..+-..+.+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh
Confidence 34455556677788888888888776 334567777777777766 478888888888 6666 45677777777888
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHH
Q 035828 582 LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVIS 660 (781)
Q Consensus 582 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ 660 (781)
.|++++|...++.+++.... +..+|..+...+...|++++|++.++++.+ +.| +...|+.
T Consensus 125 l~~~~eAl~~~~kal~~dp~-----------------n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~ 185 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQDAK-----------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQ 185 (315)
T ss_dssp HTCCTTHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHH
T ss_pred hccHHHHHHHHhhhhhhhhc-----------------chHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHH
Confidence 88899999888888875432 334799999999999999999999999998 556 4557776
Q ss_pred HHHHhcccC------cHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---cchHHHH
Q 035828 661 LLSACSHSG------LVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK---PGVWGAM 729 (781)
Q Consensus 661 l~~~~~~~~------~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l 729 (781)
+...+.+.+ ++++|++.+.++++. .|+ ...|..+...+... ..+++.+.++.. ...|+ ...+..+
T Consensus 186 r~~~l~~~~~~~~~~~~~~ai~~~~~al~~---~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l 261 (315)
T d2h6fa1 186 RYFVISNTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFL 261 (315)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred HHHHHHHccccchhhhhHHhHHHHHHHHHh---CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHH
Confidence 665554433 478899999988765 676 56677676665544 457777766654 23333 3345555
Q ss_pred HHHHHh--cCCcHHHHHHHHHHhcc
Q 035828 730 LSACSH--HGDTKMGKQVAELLFKL 752 (781)
Q Consensus 730 ~~~~~~--~g~~~~A~~~~~~~~~~ 752 (781)
+..+.. .++.+.+...++++.++
T Consensus 262 ~~~y~~~~~~~~~~~~~~~~ka~~l 286 (315)
T d2h6fa1 262 VDIYEDMLENQCDNKEDILNKALEL 286 (315)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 555543 35666677777776554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=2.6e-07 Score=88.65 Aligned_cols=132 Identities=11% Similarity=0.098 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSA-CSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM 700 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 700 (781)
|...+..+.+.|+.+.|.++|+++.+.+. .+...|...... +...|+.+.|..+|+.+++. .|+ ...+...++.
T Consensus 137 w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~ 212 (308)
T d2onda1 137 YIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDY 212 (308)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHH
Confidence 55555666666777777777777776432 222333333222 23457888888888888765 344 4677788888
Q ss_pred hhhcCChHHHHHHHHhC----CCCCC--cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCc
Q 035828 701 LGRSGKLQEAYEFIKNL----PIQPK--PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVG 758 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 758 (781)
+.+.|+.++|..+|+++ +.+|. ...|...+......|+.+.+..+++++.+..|++..
T Consensus 213 ~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 213 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 88888888888888775 23332 236777777777788888888888888888877644
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=2.4e-08 Score=93.70 Aligned_cols=195 Identities=13% Similarity=-0.030 Sum_probs=102.7
Q ss_pred HHHHHhCCChhHHHHHHhhc-CCCC-CHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChh
Q 035828 544 ISAFSQNKAEVRALELFRHL-EFEP-NEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNA 621 (781)
Q Consensus 544 ~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 621 (781)
..+|.+.|++++|++.|++. .+.| +..++..+-.++...|+++.|...|+.+.+.... +..
T Consensus 44 G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~ 106 (259)
T d1xnfa_ 44 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----------------YNY 106 (259)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CTH
T ss_pred HHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-----------------hhh
Confidence 33344444444444444444 3333 2233444444444445555555555444443221 122
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 700 (781)
+|..+...+...|++++|++.|++..+. .| +......+..++...+..+.+..+...... ..+....+. ++..
T Consensus 107 a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~ 180 (259)
T d1xnfa_ 107 AHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEF 180 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHH
Confidence 5666777788889999999998888773 44 333333333444455555555555444432 233332222 2333
Q ss_pred hhhcCChHHHHHHH-HhCC----CCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHH
Q 035828 701 LGRSGKLQEAYEFI-KNLP----IQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 701 ~~~~g~~~~A~~~~-~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
+............. .... ..|+ ..++..+...+...|++++|...++++++.+|++...+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 181 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 32222222222211 1111 1222 235667888889999999999999999999998865543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=4.3e-09 Score=98.92 Aligned_cols=188 Identities=11% Similarity=0.025 Sum_probs=132.8
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035828 570 ISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNS 649 (781)
Q Consensus 570 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 649 (781)
.++..+-.++.+.|+++.|...|+..++... + ++.+|+.+..++...|++++|++.|++..+
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p--~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~- 99 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRP--D---------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE- 99 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--C---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCC--C---------------CHHHHhhhchHHHHHHHHHHhhhhhhHHHH-
Confidence 3555566778899999999999999987643 3 344788999999999999999999999998
Q ss_pred CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcchH
Q 035828 650 GIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPGVW 726 (781)
Q Consensus 650 g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 726 (781)
+.|+ ..++..+..++...|++++|.+.+++.++. .|+ ......+...+.+.+..+.+..+.... ...+....+
T Consensus 100 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (259)
T d1xnfa_ 100 -LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW 175 (259)
T ss_dssp -HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH
T ss_pred -HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhh
Confidence 5564 557888889999999999999999999876 554 344444455555666555554444333 122332222
Q ss_pred HHHHHHHHh----cCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 727 GAMLSACSH----HGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 727 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
. ++..+.. .+..+.+...+.......|..+.++..+|.+|...|++++|++.+
T Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 232 (259)
T d1xnfa_ 176 N-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 232 (259)
T ss_dssp H-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2 2222222 223444444444444556777888999999999999999999875
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.71 E-value=2.5e-07 Score=88.75 Aligned_cols=180 Identities=9% Similarity=0.007 Sum_probs=137.1
Q ss_pred CchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035828 583 GVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLL 662 (781)
Q Consensus 583 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 662 (781)
+..+.+..+++..++...+.+. ..|...+..+...|+.+.|..+|+++.+.........|..++
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~----------------~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~ 141 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNM----------------LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM 141 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCH----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 3456777888877654332222 257777788889999999999999998743222345788999
Q ss_pred HHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHh-hhcCChHHHHHHHHhC-C-CCCCcchHHHHHHHHHhcCC
Q 035828 663 SACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDML-GRSGKLQEAYEFIKNL-P-IQPKPGVWGAMLSACSHHGD 738 (781)
Q Consensus 663 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~ 738 (781)
..+.+.|+.++|.++|+++++. .|+ ...|...+... ...|+.+.|..+++.+ . .+.+...|...+..+...|+
T Consensus 142 ~~~~~~~~~~~ar~i~~~al~~---~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~ 218 (308)
T d2onda1 142 KFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE 218 (308)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCChHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC
Confidence 9999999999999999998744 554 45555555443 4468999999999887 2 34456689999999999999
Q ss_pred cHHHHHHHHHHhccCCCCCc----hHHHHHHHHHhcCChhhHHhhcC
Q 035828 739 TKMGKQVAELLFKLEPENVG----YYISLSNMYVALGRWKDAVEIGK 781 (781)
Q Consensus 739 ~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~l~~ 781 (781)
.+.|..+++++++..|.++. .+..........|+.+.+.++.|
T Consensus 219 ~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 219 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998876554 56677777778899999988753
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=1.7e-06 Score=85.09 Aligned_cols=167 Identities=8% Similarity=-0.004 Sum_probs=99.7
Q ss_pred HHHHHHHHhCCChhHHHHHHhhc----C---CCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCCCCchHHHHHHHh
Q 035828 541 NCMISAFSQNKAEVRALELFRHL----E---FEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQENSFISSALLDM 613 (781)
Q Consensus 541 ~~l~~~~~~~~~~~~A~~~~~~~----~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 613 (781)
..+...+...|+++.+...+... . ......++......+...++...+...+................
T Consensus 137 ~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----- 211 (366)
T d1hz4a_ 137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW----- 211 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH-----
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCch-----
Confidence 33444555566666666655554 1 11122333344444555666666666655543321111110000
Q ss_pred hhcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHhcccCcHHHHHHHHHHhHHH---cCC
Q 035828 614 YSNCKSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP---TKSSVISLLSACSHSGLVDEGLQYYNNMLEE---YDV 687 (781)
Q Consensus 614 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 687 (781)
....+..+...+...|+.++|...+++........ ....+..+..++...|++++|...+++++.. .+.
T Consensus 212 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 286 (366)
T d1hz4a_ 212 -----ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 286 (366)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhccc
Confidence 01134556666778899999999888876543222 2235566777888889999999999887543 233
Q ss_pred CCC-cchHHHHHHHhhhcCChHHHHHHHHhC
Q 035828 688 RPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 688 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
.|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 287 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444 467788889999999999999888765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.1e-07 Score=75.55 Aligned_cols=105 Identities=20% Similarity=0.149 Sum_probs=89.1
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG 737 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 737 (781)
-...+...|++++|+..|++.++. .|+ ...|..+..+|...|++++|+..++++ ...| ++..|..++.++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 345677889999999999999865 666 578999999999999999999998877 3344 5668888899999999
Q ss_pred CcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 738 DTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
++++|+..++++++++|+++.++..++.+..
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999998887654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.62 E-value=2.3e-08 Score=97.77 Aligned_cols=206 Identities=7% Similarity=-0.148 Sum_probs=142.1
Q ss_pred CCChhHHHHHHhhc-CCCCCH-hHHHHHHHHhcc--cCchHHHHHHHHHHHHhCCCCCchHHHHHHHhhhcCCChhhHH-
Q 035828 550 NKAEVRALELFRHL-EFEPNE-ISIVSILSACTQ--LGVLRHGKQIHGHVFHLGFQENSFISSALLDMYSNCKSNAAWS- 624 (781)
Q Consensus 550 ~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 624 (781)
.|+.++|+.++++. ...|+. ..+..+..++.. .++++.|...++.+.+...... ..|.
T Consensus 86 ~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-----------------~~~~~ 148 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF-----------------HCWDY 148 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH-----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhh-----------------hhhhh
Confidence 34467778888777 556643 344444444333 3457788888887777543221 1232
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh
Q 035828 625 SMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR 703 (781)
Q Consensus 625 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 703 (781)
.....+...+++++|+..++.+.+. .| +...|..+...+...|++++|...++...+. .|. ...+...+..
T Consensus 149 ~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~ 220 (334)
T d1dcea1 149 RRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFF 220 (334)
T ss_dssp HHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHH
Confidence 2335566788899999999888874 44 5667888888888888888777666655433 222 1223334455
Q ss_pred cCChHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 704 SGKLQEAYEFIKNL--PIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 704 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.+..+++...+... ..+++...+..++..+...|+.++|...+.+..+.+|.++.++..+|.+|...|++++|++.+
T Consensus 221 l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~ 299 (334)
T d1dcea1 221 TDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 299 (334)
T ss_dssp HCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66777777766654 233445556666777778899999999999999999999999999999999999999999865
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=6.4e-08 Score=86.52 Aligned_cols=121 Identities=7% Similarity=-0.078 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHH
Q 035828 652 RPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGA 728 (781)
Q Consensus 652 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 728 (781)
.|+...+......+.+.|++++|+..|+++++. .|+ +..|..++.+|.+.|++++|++.++++ .+.|+ ...|..
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~ 77 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 77 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHH
Confidence 377778888889999999999999999998865 666 578999999999999999999999886 66675 557888
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 729 MLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
++.++...|++++|...++++.++.|++...+...++.+...++...
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 124 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999998877766666666665544333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.1e-07 Score=78.96 Aligned_cols=115 Identities=10% Similarity=0.041 Sum_probs=91.0
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcC
Q 035828 661 LLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSACSHHG 737 (781)
Q Consensus 661 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 737 (781)
....|.+.|++++|...|+++++. .|+ ...|..+..+|...|++++|++.++++ ...|+ ...|..++.++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 345677889999999999988865 666 578888899999999999999888876 44554 467888888888899
Q ss_pred CcHHHHHHHHHHhccCCCCCchHHHHHHHH--HhcCChhhHHh
Q 035828 738 DTKMGKQVAELLFKLEPENVGYYISLSNMY--VALGRWKDAVE 778 (781)
Q Consensus 738 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~ 778 (781)
++++|...++++.++.|+++.++..+..+. ...+.+++|+.
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998888877663 34455666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.4e-07 Score=75.04 Aligned_cols=109 Identities=10% Similarity=-0.040 Sum_probs=89.2
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCCh---HHHHHHHHhC-CCCCCc---chHHHHH
Q 035828 659 ISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKL---QEAYEFIKNL-PIQPKP---GVWGAML 730 (781)
Q Consensus 659 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~l~ 730 (781)
..+++.+...+++++|.+.|++.+.. .|+ +.++..++.++.+.++. ++|+++++++ ...|+. ..+..++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 45677788889999999999999865 665 58899999999876654 5699999886 444543 3677889
Q ss_pred HHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 035828 731 SACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVAL 770 (781)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 770 (781)
.+|.+.|++++|++.++++++++|+++.+...+..+..+.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888776543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.1e-07 Score=75.52 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=76.9
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRW 773 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 773 (781)
.-+..+.+.|++++|+..++++ ...| ++..|..+..++.+.|++++|+..++++++++|+++.+|..+|.+|...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 4567788999999999999987 4445 5667999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhc
Q 035828 774 KDAVEIG 780 (781)
Q Consensus 774 ~~A~~l~ 780 (781)
++|++.+
T Consensus 88 ~~A~~~~ 94 (117)
T d1elwa_ 88 EEAKRTY 94 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999865
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.4e-06 Score=76.23 Aligned_cols=137 Identities=9% Similarity=-0.033 Sum_probs=109.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcC
Q 035828 627 ISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSG 705 (781)
Q Consensus 627 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 705 (781)
...+...|++++|++.|.++ .+|+..+|..+..++...|++++|.+.|++.++. .|+ ...|..+..++.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHHHHHHhhc
Confidence 45567899999999999875 3577888999999999999999999999999865 777 589999999999999
Q ss_pred ChHHHHHHHHhC-C-CCCC----------------cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 035828 706 KLQEAYEFIKNL-P-IQPK----------------PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMY 767 (781)
Q Consensus 706 ~~~~A~~~~~~~-~-~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 767 (781)
++++|++.+++. . .+++ ..++..+..++...|++++|.+.++++.++.|+........+.-.
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~ 164 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMEC 164 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 999999888765 1 1111 123556777788999999999999999999988655555544333
Q ss_pred Hhc
Q 035828 768 VAL 770 (781)
Q Consensus 768 ~~~ 770 (781)
...
T Consensus 165 ~~~ 167 (192)
T d1hh8a_ 165 VWK 167 (192)
T ss_dssp HHT
T ss_pred HHh
Confidence 333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.48 E-value=7.1e-08 Score=75.96 Aligned_cols=87 Identities=10% Similarity=0.044 Sum_probs=77.3
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG 771 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 771 (781)
...++..+.+.|++++|+..++++ ...| ++..|..++..+.+.|++++|+..++++++++|+++.++..||.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 445777888999999999999887 4455 46688889999999999999999999999999999999999999999999
Q ss_pred ChhhHHhhc
Q 035828 772 RWKDAVEIG 780 (781)
Q Consensus 772 ~~~~A~~l~ 780 (781)
++++|++.+
T Consensus 99 ~~~~A~~~l 107 (112)
T d1hxia_ 99 NANAALASL 107 (112)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999999875
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=1.6e-06 Score=82.11 Aligned_cols=88 Identities=11% Similarity=0.004 Sum_probs=39.1
Q ss_pred cCcHHHHHHHHHHhHHHcCCC---CC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc--------hHHHHHHHHH
Q 035828 668 SGLVDEGLQYYNNMLEEYDVR---PE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG--------VWGAMLSACS 734 (781)
Q Consensus 668 ~~~~~~a~~~~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~--------~~~~l~~~~~ 734 (781)
.|++++|.+.+++..+..... +. ..++..++..+.+.|++++|++.++++ ...|+.. .+...+..+.
T Consensus 131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (290)
T d1qqea_ 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (290)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHH
Confidence 355555555555543321111 11 234555555566666666666655544 1111110 1122222334
Q ss_pred hcCCcHHHHHHHHHHhccCCC
Q 035828 735 HHGDTKMGKQVAELLFKLEPE 755 (781)
Q Consensus 735 ~~g~~~~A~~~~~~~~~~~p~ 755 (781)
..|+++.|...++++.+.+|.
T Consensus 211 ~~~d~~~A~~~~~~~~~~~~~ 231 (290)
T d1qqea_ 211 AATDAVAAARTLQEGQSEDPN 231 (290)
T ss_dssp HTTCHHHHHHHHHGGGCC---
T ss_pred HhccHHHHHHHHHHHHHhCCC
Confidence 456666666666666665554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=6.1e-07 Score=78.58 Aligned_cols=112 Identities=12% Similarity=0.006 Sum_probs=95.0
Q ss_pred HhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHH
Q 035828 664 ACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKM 741 (781)
Q Consensus 664 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 741 (781)
.+...|++++|++.|+++ .+|++.+|..+..+|...|++++|++.|++. ...| .+..|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 556789999999999875 2566788999999999999999999999987 4555 45578889999999999999
Q ss_pred HHHHHHHHhccCCCCC----------------chHHHHHHHHHhcCChhhHHhhc
Q 035828 742 GKQVAELLFKLEPENV----------------GYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 742 A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|...++++++..|.++ .++..++.+|...|++++|.+.+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l 143 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 143 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998765543 45778999999999999998754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.44 E-value=1.7e-07 Score=83.71 Aligned_cols=95 Identities=11% Similarity=-0.019 Sum_probs=83.7
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHH
Q 035828 618 KSNAAWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHV 695 (781)
Q Consensus 618 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 695 (781)
|++..+......+.+.|++++|+..|++..+ +.| +...|..+..+|.+.|++++|+..+++.+ .+.|+ ...|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHH
Confidence 5566677788899999999999999999888 455 56689999999999999999999999986 56887 57899
Q ss_pred HHHHHhhhcCChHHHHHHHHhC
Q 035828 696 CIVDMLGRSGKLQEAYEFIKNL 717 (781)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~ 717 (781)
.++.+|.+.|++++|+..++++
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999876
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=2.5e-06 Score=80.69 Aligned_cols=132 Identities=8% Similarity=-0.028 Sum_probs=78.6
Q ss_pred HHHHHHHHH-hcCChHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-----
Q 035828 623 WSSMISAYG-YHGKGWEAIELFHEMCN----SGIRPT-KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET----- 691 (781)
Q Consensus 623 ~~~li~~~~-~~~~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----- 691 (781)
+..+...|. ..|++++|++.+++..+ .+..+. ..++..+...+...|++++|.+.++++.......+..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 444444553 35788888888777653 121221 2356777778888888888888888876542222211
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---c---chHHHHHHHHHh--cCCcHHHHHHHHHHhccCC
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK---P---GVWGAMLSACSH--HGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~---~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~p 754 (781)
..+...+..+...|+++.|...+++. ...|. . .....++.++.. .+.+++|+..|+++.+++|
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 23345556667788888888888876 34332 1 133445555433 2346778877777776654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=9.8e-07 Score=75.48 Aligned_cols=84 Identities=12% Similarity=0.032 Sum_probs=71.0
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
.+|..+..+|.+.|++++|++.+++. ...| ++..+..++.++...|++++|...++++++++|+++.+...++.++.+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35777889999999999999998876 4455 566888889999999999999999999999999999999999988776
Q ss_pred cCChhh
Q 035828 770 LGRWKD 775 (781)
Q Consensus 770 ~g~~~~ 775 (781)
.++..+
T Consensus 143 ~~~~~~ 148 (170)
T d1p5qa1 143 IRRQLA 148 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=7.7e-07 Score=75.39 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=77.0
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALG 771 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 771 (781)
+...+..|.+.|++++|++.|+++ ...| +...|..+...+...|++++|...++++++++|+++.++..+|.+|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 334567788999999999999987 4455 56678889999999999999999999999999999999999999999999
Q ss_pred ChhhHHhhc
Q 035828 772 RWKDAVEIG 780 (781)
Q Consensus 772 ~~~~A~~l~ 780 (781)
++++|++.+
T Consensus 93 ~~~eA~~~~ 101 (159)
T d1a17a_ 93 KFRAALRDY 101 (159)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999998754
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.16 E-value=4.7e-06 Score=69.60 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=69.1
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
.+|..+..+|.+.|++++|++.++++ ...| ++..|..++.++...|++++|...++++++++|+++.+...+..+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46778999999999999999999886 4455 567899999999999999999999999999999999999988887654
Q ss_pred c
Q 035828 770 L 770 (781)
Q Consensus 770 ~ 770 (781)
.
T Consensus 148 l 148 (153)
T d2fbna1 148 L 148 (153)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.11 E-value=1e-05 Score=68.77 Aligned_cols=83 Identities=8% Similarity=-0.037 Sum_probs=67.6
Q ss_pred chHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 035828 692 EHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA 769 (781)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 769 (781)
.+|..+..+|.+.|++++|+..+++. ...| +...+.....++...|++++|...++++++++|+++.+...++.+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35667888889999999999988876 3344 566788888888999999999999999999999999998888888766
Q ss_pred cCChh
Q 035828 770 LGRWK 774 (781)
Q Consensus 770 ~g~~~ 774 (781)
.++..
T Consensus 145 ~~~~~ 149 (168)
T d1kt1a1 145 AKEHN 149 (168)
T ss_dssp HHHHH
T ss_pred HHhHH
Confidence 65444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.07 E-value=5.7e-06 Score=70.65 Aligned_cols=87 Identities=11% Similarity=-0.012 Sum_probs=75.1
Q ss_pred cchHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 035828 691 TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYV 768 (781)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 768 (781)
...|..+..++.+.|++++|+..++++ ...| ++..|..++.++...|+++.|+..++++++++|+++.+...+..++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 457888999999999999999999887 5566 45688999999999999999999999999999999999999999887
Q ss_pred hcCChhhHH
Q 035828 769 ALGRWKDAV 777 (781)
Q Consensus 769 ~~g~~~~A~ 777 (781)
+.+...++.
T Consensus 157 ~l~~~~~~~ 165 (169)
T d1ihga1 157 KIKAQKDKE 165 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.9e-06 Score=68.33 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=72.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC---CcHHHHHHHHHHhccCCCC--CchHHHHHHH
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHG---DTKMGKQVAELLFKLEPEN--VGYYISLSNM 766 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~ 766 (781)
...++..+...+++++|.+.+++. ...| ++.++..+.+++.+.+ +.++|+..++++++.+|.+ +.+++.||.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456888899999999999999987 4444 5678888998887754 5567999999999998765 4589999999
Q ss_pred HHhcCChhhHHhhc
Q 035828 767 YVALGRWKDAVEIG 780 (781)
Q Consensus 767 ~~~~g~~~~A~~l~ 780 (781)
|.+.|++++|++.+
T Consensus 82 y~~~g~~~~A~~~~ 95 (122)
T d1nzna_ 82 NYRLKEYEKALKYV 95 (122)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHHhhhHHHHHHH
Confidence 99999999999876
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=4.7e-06 Score=67.04 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=56.5
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCch-------HHHHHH
Q 035828 695 VCIVDMLGRSGKLQEAYEFIKNL-PIQP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGY-------YISLSN 765 (781)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~l~~ 765 (781)
-.+...+.+.|++++|++.|++. ...| +...+..+..++.+.|+++.|+..++++++++|+++.. +..+|.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34566667777777777776655 3333 34566667777777777777777777777777766653 444555
Q ss_pred HHHhcCChhhHHhhc
Q 035828 766 MYVALGRWKDAVEIG 780 (781)
Q Consensus 766 ~~~~~g~~~~A~~l~ 780 (781)
.+...|++++|++.+
T Consensus 88 ~~~~~~~~~~A~~~~ 102 (128)
T d1elra_ 88 SYFKEEKYKDAIHFY 102 (128)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 666677777777654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=8.3e-06 Score=69.47 Aligned_cols=105 Identities=8% Similarity=-0.017 Sum_probs=77.0
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHH 736 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 736 (781)
.+......+.+.|++++|...|++.++..+..+.... ........+. ..++..+..++.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~------------~~~~~~~~~~-------~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------EEAQKAQALR-------LASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS------------HHHHHHHHHH-------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch------------HHHhhhchhH-------HHHHHHHHHHHHhh
Confidence 4555566777888888888888888765332222110 0000011110 12466788888999
Q ss_pred CCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 737 GDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|++++|+..++++++++|+++.++..+|.+|...|++++|++.+
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~ 119 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF 119 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=0.0022 Score=60.00 Aligned_cols=280 Identities=9% Similarity=0.037 Sum_probs=153.5
Q ss_pred CCccchhHHHHHhhcCCchhHHHHhhhhcCCCcchhhHHHHHHHhcCCchhhHHHHHHHHhcCCCCChhhHHHHHHHHhc
Q 035828 6 HLPTSTSLLTAYSNVSYFESSLALFYETCNKDVVTWNAMITACVENRCVVMGLHFFGEMVEEGIRFDSTTLLIIVSALTQ 85 (781)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 85 (781)
|..-...+..-|-+.|.++.|..++..+.. |..++..+.+.+++..|.+++.+. -+..+|..+...|.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHh
Confidence 334444556667777888888888774443 667777777777777777776653 245577777777765
Q ss_pred cCcccchhHHHHHHHHhcCCCCcchhhhHHHHhhccCChhhHHHHhccC---CCCCeeehHHHHHHHhhCCChhhHHHHH
Q 035828 86 MNCLKQGRVVHCLSIKAGMIADSSLCNVFVNMYAKCGDLNSSECTFSGM---HCADTVSWNTIMSGCLHNNYPEKCLLYF 162 (781)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~ 162 (781)
......+ .+........+.....++..|-..|.+++...+++.. ..++...++.++..|++.+ .++..+.+
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l 155 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHL 155 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHH
Confidence 5433221 2222233344445566777777778877777777753 2345556777777776653 34444444
Q ss_pred HHHhhcCCCCCcchHHHHHHHhhccCChhHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCc
Q 035828 163 REMGWSGEQADNVSLSSAVAASACLGELSYGKVIHALGIKLGYEDSPYVSVTNSLISMYSQCGDIEAAERAFWGMTCKDV 242 (781)
Q Consensus 163 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 242 (781)
+.. + +.....-+++.|...+ .|.-++-.|.+.|+++.|..+.-.-+ +++
T Consensus 156 ~~~---s---~~y~~~k~~~~c~~~~------------------------l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~ 204 (336)
T d1b89a_ 156 ELF---W---SRVNIPKVLRAAEQAH------------------------LWAELVFLYDKYEEYDNAIITMMNHP-TDA 204 (336)
T ss_dssp HHH---S---TTSCHHHHHHHHHTTT------------------------CHHHHHHHHHHTTCHHHHHHHHHHST-TTT
T ss_pred Hhc---c---ccCCHHHHHHHHHHcC------------------------ChHHHHHHHHhcCCHHHHHHHHHHcc-hhh
Confidence 332 1 1222333444444333 23445555666666666655443221 233
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH-----------HHHHHHHHHhcccchhhhhhHHHHHHHhcCCC
Q 035828 243 VSWNAIIDGFALNGKFEEAFDLLHEMQLMRSVEPDIA-----------TVVTLISLCADSLLLREGRSVHGYAIRRLLGY 311 (781)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~pd~~-----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 311 (781)
......+..+.+..+.+...++.....+ ..|+.. .-..++..+.+.+++......++.....|
T Consensus 205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~---~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n--- 278 (336)
T d1b89a_ 205 WKEGQFKDIITKVANVELYYRAIQFYLE---FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN--- 278 (336)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHHH---HCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHH---cCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---
Confidence 3344455555555555555555444433 223211 12345555667778888888887776655
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 035828 312 DLLMMNSLMDFYSKSNSLSKAELLFNAI 339 (781)
Q Consensus 312 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 339 (781)
+..+.++|...|...+|++.-++..+.-
T Consensus 279 ~~~vn~al~~lyie~~d~~~l~~~i~~~ 306 (336)
T d1b89a_ 279 NKSVNESLNNLFITEEDYQALRTSIDAY 306 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 3468899999999999987766666554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.86 E-value=3.2e-05 Score=60.20 Aligned_cols=86 Identities=13% Similarity=0.016 Sum_probs=56.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhh
Q 035828 626 MISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGR 703 (781)
Q Consensus 626 li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 703 (781)
+...+.+.|++++|+..|++..+ ..| +...|..+..++.+.|++++|...+++.++. .|+ ...+..++..|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHHHHHH
Confidence 34445666777777777777666 344 3456666666777777777777777776644 555 4666667777777
Q ss_pred cCChHHHHHHHHh
Q 035828 704 SGKLQEAYEFIKN 716 (781)
Q Consensus 704 ~g~~~~A~~~~~~ 716 (781)
.|++++|++.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7777777766654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=1.6e-05 Score=59.62 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=60.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC----CC----CC-CcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHH
Q 035828 694 HVCIVDMLGRSGKLQEAYEFIKNL----PI----QP-KPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLS 764 (781)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~----~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 764 (781)
+-.++..+.+.|++++|++.++++ +. .+ ...++..+..++.+.|++++|+..++++++++|+++.++.+++
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 446777788888888888887765 11 11 1346888999999999999999999999999999999999987
Q ss_pred HHHH
Q 035828 765 NMYV 768 (781)
Q Consensus 765 ~~~~ 768 (781)
....
T Consensus 88 ~~~~ 91 (95)
T d1tjca_ 88 YFEY 91 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.76 E-value=2.9e-05 Score=64.55 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=75.8
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHH 736 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 736 (781)
.+..-...+.+.|++.+|...|+++++.....+.... ......... .....+..+..++.+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~--------------~~~~~~~~~----~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD--------------QILLDKKKN----IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC--------------HHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh--------------HHHHHhhhh----HHHHHHhhHHHHHHHh
Confidence 4555666777788888888888887654222221100 000000000 0123567788889999
Q ss_pred CCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 737 GDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 737 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|+++.|+..++++++++|+++.+++.+|.+|...|++++|+..+
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~ 124 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 124 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999998754
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.74 E-value=0.0014 Score=60.26 Aligned_cols=142 Identities=12% Similarity=0.051 Sum_probs=69.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh----cCCh
Q 035828 633 HGKGWEAIELFHEMCNSGIRPTKSSVISL-LSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR----SGKL 707 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 707 (781)
..+.+.|...++...+.|..+....+... ............+...+..... ..+...+..|...|.. ..+.
T Consensus 87 ~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~ 162 (265)
T d1ouva_ 87 SQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDL 162 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred chhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCccccc
Confidence 34556666666666554432221111111 1111223345555555554432 2233444555555543 3345
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCChhhHHhh
Q 035828 708 QEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLEPENVGYYISLSNMYVA----LGRWKDAVEI 779 (781)
Q Consensus 708 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~l 779 (781)
..+..+++......+......+...+.. ..|++.|+.+++++.+.+ ++.+++.||.+|.. .++.++|.+.
T Consensus 163 ~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~ 240 (265)
T d1ouva_ 163 KKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIEN 240 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred ccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHH
Confidence 5555555544222334444444444443 456777777777776653 45666777777764 3366666654
Q ss_pred c
Q 035828 780 G 780 (781)
Q Consensus 780 ~ 780 (781)
+
T Consensus 241 ~ 241 (265)
T d1ouva_ 241 F 241 (265)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=7.6e-06 Score=83.79 Aligned_cols=117 Identities=9% Similarity=-0.035 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-cchHHHHHHH
Q 035828 655 KSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPK-PGVWGAMLSA 732 (781)
Q Consensus 655 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 732 (781)
...+..+...+.+.|+.++|...+++..+. .| ..++..+++.+...|++++|+..++++ ...|+ ...|+.++..
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 345666666667777777777776665432 11 246667777777888888888877776 44453 4577777777
Q ss_pred HHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhh
Q 035828 733 CSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKD 775 (781)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 775 (781)
+...|+..+|+..|.+++...|+.+.++.+|+.+|.+..+..+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~ 238 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRD 238 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhh
Confidence 7778888888888888888888788888888877776554433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=7.1e-05 Score=59.87 Aligned_cols=59 Identities=7% Similarity=0.013 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHH
Q 035828 623 WSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLE 683 (781)
Q Consensus 623 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 683 (781)
+-.+...+...|++++|++.|.+.++ +.| +...+..+..+|.+.|++++|.+.++++++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 44445555555666666666655555 233 344555555555555555555555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.63 E-value=3.6e-05 Score=65.46 Aligned_cols=105 Identities=10% Similarity=0.044 Sum_probs=75.3
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCC-CcchHHHHHHHHHh
Q 035828 657 SVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQP-KPGVWGAMLSACSH 735 (781)
Q Consensus 657 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~ 735 (781)
.+......+...|++++|++.|+++++.. +. ........+. ....| ....+..+..++.+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~---~~----------~~~~~~~~~~------~~~~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG----------SRAAAEDADG------AKLQPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------HHHHSCHHHH------GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh---hh----------hhhhhhhHHH------HHhChhhHHHHHHHHHHHHh
Confidence 35556667777888888888887765420 00 0000011111 01122 33467778888999
Q ss_pred cCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 736 HGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.|++++|+..++++++++|+++.++..+|.+|...|++++|++-+
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~ 134 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 134 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHH
Confidence 999999999999999999999999999999999999999998754
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.61 E-value=9.3e-05 Score=62.60 Aligned_cols=106 Identities=8% Similarity=-0.007 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 035828 656 SSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSH 735 (781)
Q Consensus 656 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 735 (781)
..+......+.+.|++++|...|++.+......+....- .......+ ....+..+..++.+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~------------~~~~~~~~-------~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK------------ESKASESF-------LLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH------------HHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh------------hhhhcchh-------HHHHHHhHHHHHHH
Confidence 355555666677777777777777665442222221100 00000000 02245667778889
Q ss_pred cCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 736 HGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.|++++|+..++++++++|+++.+++.+|.+|...|++++|++-+
T Consensus 77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~ 121 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 121 (168)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999998754
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.57 E-value=2.4e-05 Score=64.27 Aligned_cols=122 Identities=14% Similarity=0.103 Sum_probs=77.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhccc----------CcHHHHHHHHHHhHHHcCCCCC-cchHHHH
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHS----------GLVDEGLQYYNNMLEEYDVRPE-TEHHVCI 697 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 697 (781)
|-+.+.+++|+..|+...+ +.| +...+..+..+|... +++++|.+.++++++. .|+ ..+|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---cchhhHHHhhH
Confidence 4556667777777777776 445 344565565555432 3345666666666543 555 3566666
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHH
Q 035828 698 VDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAV 777 (781)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 777 (781)
..+|...|++. ++.. ...++++.|.+.++++++++|++..++..|+......+.+.++.
T Consensus 82 G~~y~~~g~~~------------~~~~---------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~ 140 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY 140 (145)
T ss_dssp HHHHHHHHHHC------------CCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHcccch------------hhHH---------HHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665544321 1100 01234688999999999999999999999988876666666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.53 E-value=0.00013 Score=62.02 Aligned_cols=108 Identities=16% Similarity=0.021 Sum_probs=71.0
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHH-HHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 035828 660 SLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQE-AYEFIKNLPIQPKPGVWGAMLSACSHHGD 738 (781)
Q Consensus 660 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 738 (781)
.........|++++|.+.|.+.+.-+.-.+-... ..+.|-. ...-++.. ....+..++..+...|+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 3345677889999999999998754321111100 0011111 11111110 12356677777888888
Q ss_pred cHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 739 TKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 739 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+++|+..++++++.+|.+...|..|+.+|.+.|++.+|++.|
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y 124 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAY 124 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888888888888888888888888888888888888765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.49 E-value=0.04 Score=51.16 Aligned_cols=77 Identities=8% Similarity=0.031 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcC
Q 035828 404 IGVNALMHMYINCGDLVAAFSLLQRISHNSDTSCWNIVIVACTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGN 483 (781)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 483 (781)
.+|..+...+.+.....-+.-+ ......+......++..|-..|.+++...+++..... -.++...++.++..+++
T Consensus 70 ~~~k~~~~~l~~~~e~~la~i~--~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 70 RTWKEVCFACVDGKEFRLAQMC--GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHT--TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHH--HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHH
Confidence 3444455555554444333111 1111123333445666666666666666666655432 23444455555555555
Q ss_pred c
Q 035828 484 L 484 (781)
Q Consensus 484 ~ 484 (781)
.
T Consensus 146 ~ 146 (336)
T d1b89a_ 146 F 146 (336)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.49 E-value=7.9e-05 Score=67.93 Aligned_cols=127 Identities=12% Similarity=-0.028 Sum_probs=92.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCc-chHHHHHHHhhhcCCh
Q 035828 630 YGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPET-EHHVCIVDMLGRSGKL 707 (781)
Q Consensus 630 ~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 707 (781)
..+.|++++|+..+++..+ ..| |...+..+...++..|++++|.+.++...+. .|+. ..+..+...+...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhcccc
Confidence 3567999999999999998 456 6679999999999999999999999999865 7874 5555565655555555
Q ss_pred HHHHHHHHhCC--CCCC-cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHH
Q 035828 708 QEAYEFIKNLP--IQPK-PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYI 761 (781)
Q Consensus 708 ~~A~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 761 (781)
+++..-..... .+|+ ...+......+...|+.++|...++++.+..|+.+..+.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 55443322221 2232 222333345567789999999999999999999877654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=1.4e-05 Score=81.69 Aligned_cols=109 Identities=10% Similarity=0.043 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHH
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDM 700 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 700 (781)
.|..+...+.+.|+.++|...+..... ..| ..++..+...+...|++++|...|++..+. .|+ ...|+.|+..
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l---~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCS--YIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAIL 195 (497)
T ss_dssp ---------------------CCHHHH--HHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhC--CCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 566677777888999999888776654 122 246777888888899999999999998855 787 5899999999
Q ss_pred hhhcCChHHHHHHHHhC-C-CCCCcchHHHHHHHHHhc
Q 035828 701 LGRSGKLQEAYEFIKNL-P-IQPKPGVWGAMLSACSHH 736 (781)
Q Consensus 701 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~ 736 (781)
+...|+..+|+..+.+. . .+|-...+..+...+.+.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 99999999999888776 3 345566677777666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.40 E-value=0.0047 Score=56.43 Aligned_cols=117 Identities=13% Similarity=0.051 Sum_probs=76.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc----cCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh----c
Q 035828 633 HGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSH----SGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR----S 704 (781)
Q Consensus 633 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 704 (781)
......+...+..... ..+...+..|...+.. ..+...+..+++...+. .+......+...|.. .
T Consensus 123 ~~~~~~a~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~ 195 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACD---LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGAT 195 (265)
T ss_dssp CCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSC
T ss_pred cchhHHHHHHhhhhhc---ccccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccc
Confidence 4456667777766664 3345556666655553 45777788887776532 245556666666654 5
Q ss_pred CChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccCCCC
Q 035828 705 GKLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 705 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~ 756 (781)
.++++|+.++++....-++..+..|...+.. ..|.++|.++++++.++++.+
T Consensus 196 ~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 196 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 6889999998877333345566667666654 348899999999998887553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.31 E-value=0.00013 Score=60.69 Aligned_cols=56 Identities=13% Similarity=-0.026 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhccCCC-----------CCchHHHHHHHHHhcCChhhHHhhc
Q 035828 725 VWGAMLSACSHHGDTKMGKQVAELLFKLEPE-----------NVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
.|..+..++.+.|++++|...+++++++.|. ...+++.+|.+|...|++++|++.+
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~ 123 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 123 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4555666666677777777776666654322 1235788999999999999998764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.23 E-value=0.0025 Score=53.78 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHH----HcCCCCCcch
Q 035828 622 AWSSMISAYGYHGKGWEAIELFHEMCNSGIRP-TKSSVISLLSACSHSGLVDEGLQYYNNMLE----EYDVRPETEH 693 (781)
Q Consensus 622 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 693 (781)
.+..+...+...|++++|+..++++.+ ..| +...|..++.++...|+.++|++.|+++.+ ..|+.|+..+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 577788888999999999999999988 555 667899999999999999999999988744 3588887643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.13 E-value=0.00071 Score=56.06 Aligned_cols=91 Identities=13% Similarity=0.059 Sum_probs=54.1
Q ss_pred cccCcHHHHHHHHHHhHHHcCCCCC----------cchHHHHHHHhhhcCChHHHHHHHHhC--------CCCCC-----
Q 035828 666 SHSGLVDEGLQYYNNMLEEYDVRPE----------TEHHVCIVDMLGRSGKLQEAYEFIKNL--------PIQPK----- 722 (781)
Q Consensus 666 ~~~~~~~~a~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~----- 722 (781)
...|++++|++.|++.++...-.|+ ...|..+..+|...|++++|++.+++. ...++
T Consensus 20 ~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 99 (156)
T d2hr2a1 20 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLW 99 (156)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchh
Confidence 3445566666666665543222222 134556666667777776666655443 11111
Q ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Q 035828 723 PGVWGAMLSACSHHGDTKMGKQVAELLFKLEPEN 756 (781)
Q Consensus 723 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 756 (781)
...+..+..++...|++++|+..+++++++.|+.
T Consensus 100 ~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 100 ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 1245667777888888888888888888876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.10 E-value=9.3e-05 Score=67.46 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=82.1
Q ss_pred hcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhC-CCCCCcc-hHHHHHHHHHhcCCcHH
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNL-PIQPKPG-VWGAMLSACSHHGDTKM 741 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~ 741 (781)
..+.|++++|+..+++.++. .|+ ...+..++..|+..|++++|.+.++.. ...|+.. .+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 35679999999999999865 776 589999999999999999999999987 5667544 44455555544444444
Q ss_pred HHHHHHHHhcc-CCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 742 GKQVAELLFKL-EPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 742 A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+.....+.... .|++...+...+..+...|+.++|.+++
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~ 122 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 43333322222 3445556667788899999999998865
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.10 E-value=6.5e-05 Score=61.53 Aligned_cols=83 Identities=11% Similarity=0.058 Sum_probs=61.6
Q ss_pred hcccCcHHHHHHHHHHhHHHcCCCCC-cchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHH
Q 035828 665 CSHSGLVDEGLQYYNNMLEEYDVRPE-TEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGK 743 (781)
Q Consensus 665 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 743 (781)
|.+.+.+++|.+.++..++. .|+ +..+..+..+|...+++..+.+ ..+.+++|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHH
Confidence 44556677788888777654 565 4677777777766655544433 223467899
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 035828 744 QVAELLFKLEPENVGYYISLSNMYVALGR 772 (781)
Q Consensus 744 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 772 (781)
..++++++++|+++.++..+|.+|...|+
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~ 90 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAF 90 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence 99999999999999999999999988764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.0004 Score=51.64 Aligned_cols=55 Identities=15% Similarity=-0.027 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhccCCCC-------CchHHHHHHHHHhcCChhhHHhhc
Q 035828 726 WGAMLSACSHHGDTKMGKQVAELLFKLEPEN-------VGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
+-.++..+.+.|+++.|+.++++++++.|++ ..++..||.+|.+.|++++|++.+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y 69 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHH
Confidence 4567888999999999999999999886554 356889999999999999999865
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=1.1 Score=43.63 Aligned_cols=48 Identities=10% Similarity=0.003 Sum_probs=38.3
Q ss_pred HHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhh
Q 035828 730 LSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEI 779 (781)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l 779 (781)
+..+...|....|...+..+.+.. ++.-...++.+..+.|.++.|+..
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a 435 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQA 435 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHH
Confidence 455678899999999998887654 456777888999999999988753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.08 E-value=0.035 Score=42.06 Aligned_cols=78 Identities=14% Similarity=0.087 Sum_probs=52.0
Q ss_pred CCcchHHHHHHHhhhcC---ChHHHHHHHHhC-CCCCC-c-chHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHH
Q 035828 689 PETEHHVCIVDMLGRSG---KLQEAYEFIKNL-PIQPK-P-GVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYIS 762 (781)
Q Consensus 689 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 762 (781)
|+..+--..++++.++. +.++++.++++. ...|. . ..+-.+.-++.+.|++++|.+.++++++.+|++..+..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 44455556667776654 345677777665 23342 2 345566667888888888888888888888888877665
Q ss_pred HHHH
Q 035828 763 LSNM 766 (781)
Q Consensus 763 l~~~ 766 (781)
.-.+
T Consensus 113 ~~~I 116 (124)
T d2pqrb1 113 KSMV 116 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.06 E-value=0.043 Score=43.19 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=69.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhh----cCChHH
Q 035828 634 GKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGR----SGKLQE 709 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 709 (781)
.++++|+++|++..+.|.. .....|. .....+.++|.+++++..+. + ++.....|...|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHH
Confidence 4788899999988887632 2233332 34456788888888887543 2 23445556655543 446778
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHHHHHHHhccCC
Q 035828 710 AYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQVAELLFKLEP 754 (781)
Q Consensus 710 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 754 (781)
|++++++.-..-++.....|...+.. ..|.++|..+++++.+++.
T Consensus 78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 88888776322334445555555544 3577788888888776653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.77 E-value=0.48 Score=35.14 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=86.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHH
Q 035828 631 GYHGKGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 631 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 710 (781)
.-.|..++..+++.+.... .+..-||-+|--....-+-+...+.++.+-+-+.+.|= .-.-.++.++...+...
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n~~s-- 86 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNTLN-- 86 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTCCC--
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhh-hcHHHHHHHHHHhcchH--
Confidence 4568888999998888752 34455666665556666777777787777443332221 23344555555555332
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhhHHhhc
Q 035828 711 YEFIKNLPIQPKPGVWGAMLSACSHHGDTKMGKQVAELLFKLEPENVGYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 711 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
...+.-++.+.++|+.++-.++++.+++.+..+|.....++.+|.+-|+..+|-+++
T Consensus 87 -------------e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell 143 (161)
T d1wy6a1 87 -------------EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 143 (161)
T ss_dssp -------------HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 334445566778888888888888888877777888888888888888888887765
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=2.4 Score=41.01 Aligned_cols=115 Identities=11% Similarity=0.079 Sum_probs=69.5
Q ss_pred CChHHHHHHHHHHHhCC-CCCCHH-H-HHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHH
Q 035828 634 GKGWEAIELFHEMCNSG-IRPTKS-S-VISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEA 710 (781)
Q Consensus 634 ~~~~~A~~~~~~m~~~g-~~p~~~-~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 710 (781)
.+.+.|..++....... ..++.. . ...+.......+..+.+..++...... ..+......++....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHH
Confidence 56777777777766532 222221 1 222223334456667777777766433 33444444555556677888888
Q ss_pred HHHHHhCCCCCCcc--hHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 035828 711 YEFIKNLPIQPKPG--VWGAMLSACSHHGDTKMGKQVAELLFK 751 (781)
Q Consensus 711 ~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (781)
...++.+...|... -.--+..++...|+.+.|..++..+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 88888885444222 223456667788888888888888864
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.16 E-value=0.17 Score=39.58 Aligned_cols=104 Identities=14% Similarity=0.069 Sum_probs=72.5
Q ss_pred CcHHHHHHHHHHhHHHcCCCCCcchHHHHHHHhhhcCChHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCcHHHHH
Q 035828 669 GLVDEGLQYYNNMLEEYDVRPETEHHVCIVDMLGRSGKLQEAYEFIKNLPIQPKPGVWGAMLSACSH----HGDTKMGKQ 744 (781)
Q Consensus 669 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 744 (781)
.|.++|.++|++..+. + ++.....|.. ....+.++|++++++....-++.....+...+.. ..|.++|.+
T Consensus 7 kd~~~A~~~~~kaa~~-g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACEL-N---EMFGCLSLVS--NSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHT-T---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHC-C---Chhhhhhhcc--ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHH
Confidence 4788999999988654 3 2233334433 3456888999998877333344555556555543 457899999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHh----cCChhhHHhhc
Q 035828 745 VAELLFKLEPENVGYYISLSNMYVA----LGRWKDAVEIG 780 (781)
Q Consensus 745 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~l~ 780 (781)
+++++.+. .++.+...|+.+|.. ..+.++|++.+
T Consensus 81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~ 118 (133)
T d1klxa_ 81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTF 118 (133)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHH
Confidence 99998776 456788899999887 56888888765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.21 E-value=0.06 Score=40.73 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=48.8
Q ss_pred CCcchHHHHHHHHHhc---CCcHHHHHHHHHHhccCCCCC-chHHHHHHHHHhcCChhhHHhhc
Q 035828 721 PKPGVWGAMLSACSHH---GDTKMGKQVAELLFKLEPENV-GYYISLSNMYVALGRWKDAVEIG 780 (781)
Q Consensus 721 p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~l~ 780 (781)
|+..+--...+++.++ .+.+.|+.+++++.+.+|.+. ..++.|+.+|.+.|++++|++..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~ 96 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 96 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4445666677777765 456799999999999998765 78899999999999999998753
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=89.54 E-value=3 Score=30.87 Aligned_cols=139 Identities=14% Similarity=0.027 Sum_probs=83.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHH
Q 035828 445 CTQNGHFQEAIKTFKSMTQQQNASPDSVTLVNVISACGNLELAFEGKSLHGLALKSLMGLDTRVQNALITMYGRCRDIKS 524 (781)
Q Consensus 445 ~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 524 (781)
+.-.|..++..++..+...+. +..-|+.++-.....-+-+-..+.++.+ |--.| ...++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~ss----~~~E~NW~ICNiidt~dC~~v~~~Ld~I---G~~FD----------ls~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFD----------LDKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSC----------GGGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcccC----CccccceeeeecccccchHHHHHHHHHH---hhhcC----------chhhhcHHH
Confidence 344566777777777766543 3333443333333333333333333322 21111 122333333
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhCCChhHHHHHHhhc--CCCCCHhHHHHHHHHhcccCchHHHHHHHHHHHHhCCC
Q 035828 525 ASTVFESCYNCNLCTWNCMISAFSQNKAEVRALELFRHL--EFEPNEISIVSILSACTQLGVLRHGKQIHGHVFHLGFQ 601 (781)
Q Consensus 525 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 601 (781)
....+-.+-. +....+..+..+..+|+-+.-.++++.+ .-+|+...+..+..+|.+.|+..++.+++.+.-+.|+.
T Consensus 75 vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3333322221 1224455677888999999999999986 37788888889999999999999999999998888864
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.15 E-value=2.9 Score=29.27 Aligned_cols=69 Identities=12% Similarity=0.020 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHhhCC--CCCeeeHHHHHHHHHHHHHHhcc
Q 035828 296 EGRSVHGYAIRRLLGYDLLMMNSLMDFYSKSNSLSKAELLFNAIAP--MNDLVSWNSMISGLFKEMLYLCS 364 (781)
Q Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~ 364 (781)
++.+-+..+....+-|++.+..+.+.+|.+.+|+..|.++|+.++. ..+...|.-+++.+-..+...|+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilqelkptl~ELGI 94 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGI 94 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhHHHHhCC
Confidence 4445555555566777888888888888888888888888877654 12334555555555444444444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.17 E-value=6.3 Score=27.55 Aligned_cols=63 Identities=13% Similarity=0.267 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHHcCCCCCcchHHHHHH
Q 035828 635 KGWEAIELFHEMCNSGIRPTKSSVISLLSACSHSGLVDEGLQYYNNMLEEYDVRPETEHHVCIVD 699 (781)
Q Consensus 635 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 699 (781)
+.-++.+-+..+-...+.|++....+.++||.+.+|+..|..+++.+..+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 44556667777777789999999999999999999999999999998765 3345567776654
|