Citrus Sinensis ID: 035847
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 523 | 2.2.26 [Sep-21-2011] | |||||||
| Q5G1T1 | 850 | Pentatricopeptide repeat- | yes | no | 0.820 | 0.504 | 0.281 | 2e-61 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.923 | 0.597 | 0.266 | 2e-57 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.883 | 0.665 | 0.256 | 3e-57 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.946 | 0.625 | 0.265 | 3e-57 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.915 | 0.630 | 0.260 | 2e-56 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.852 | 0.512 | 0.266 | 3e-56 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.862 | 0.423 | 0.259 | 1e-55 | |
| Q9STF3 | 657 | Pentatricopeptide repeat- | no | no | 0.845 | 0.672 | 0.285 | 1e-55 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.862 | 0.506 | 0.273 | 3e-55 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.894 | 0.654 | 0.265 | 2e-53 |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 237 bits (604), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 183/651 (28%), Positives = 269/651 (41%), Gaps = 222/651 (34%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFLGM----------------FE 63
T + +F C +L NL LG Q+H+ I G VE C+ + M F+
Sbjct: 271 TLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVE-CSLVDMYAKCSADGSVDDCRKVFD 329
Query: 64 KMPERNVFSWTSMM-GMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDH 111
+M + +V SWT+++ G E +NLF +I +G +KAC L D
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP 389
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF---------- 158
RVGK V N+ V V+ MF+K RME A FE EK+
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449
Query: 159 -----------------------------------SNLSLLKHGKEIHPHHLKKDDLESD 183
+N+ ++ G++IH +K L +
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLG-LSCN 508
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
V N+L+ Y+KC + A F+ ++ ++++SW +M ITGF ++G
Sbjct: 509 QPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSM------------ITGFAKHGFA 556
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
LE F++MI+ ++PN ++ +L+AC+ V L
Sbjct: 557 IRVLETFNQMIEEGVKPNEVTYVAILSACSHV--------------------------GL 590
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
+S EGWR+F M +++ ++P ME Y CMVDLL R
Sbjct: 591 VS---------------------------EGWRHFNSMYEDHKIKPKMEHYACMVDLLCR 623
Query: 364 AGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEP--------L 405
AG D F+ MPF+ + N ++ + AAR + EL+P L
Sbjct: 624 AGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQL 683
Query: 406 SS-----------------------------------GKVHSFIAGDTSHSLVHKISEKL 430
S+ K+H F GDT+H H+I ++L
Sbjct: 684 SNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743
Query: 431 MRLYSEIKKIGYMKRIPAC------------------GHSEKLALAFGLISTSPGSPLRV 472
RL +EIK+ GY+ HSEK+A+AFGLISTS P+RV
Sbjct: 744 DRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRV 803
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCH+ KY+S REI++ D RFHHF DG CSC DYW
Sbjct: 804 FKNLRVCGDCHNAMKYISTVSG----REIVLRDLNRFHHFKDGKCSCNDYW 850
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 184/690 (26%), Positives = 288/690 (41%), Gaps = 207/690 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG--VELCAFLGM----------------FEKM 65
+ + + C L +G ++H L+ G ++L A G+ F++M
Sbjct: 137 NFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRM 196
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGK 115
PER++ SW +++ Y+ G + + + +E V A S L+ VGK
Sbjct: 197 PERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGK 256
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF-------------- 158
+++ Y + F+ + ++DM+ KCG +E A F+ E++
Sbjct: 257 EIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNE 316
Query: 159 -------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
++L L+ G+ IH ++ L+ ++ V
Sbjct: 317 NPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELG-LDRNVSVV 375
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ Y KC+ + A F K++ + LVSWNAM I GF Q G AL
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAM------------ILGFAQNGRPIDAL 423
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+FS+M ++P+T + V+ A A++ K IHG V+R + + V AL+ +
Sbjct: 424 NYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMY 483
Query: 308 GLGTGSFV---------------WNSLIDMYG---------------RCGAIQKN----- 332
+ WN++ID YG + G I+ N
Sbjct: 484 AKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFL 543
Query: 333 -------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
G + F MMK+ Y++E +M+ Y MVDLL RAG+ ++ +F+ +MP
Sbjct: 544 SVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPV 603
Query: 380 EPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------------------- 408
+P+ C N + AE AA LFEL P G
Sbjct: 604 KPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQV 663
Query: 409 ----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--- 443
+VHSF +G T+H KI L +L IK+ GY+
Sbjct: 664 RVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDT 723
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
K HSEKLA++FGL++T+ G+ + V KNLR+C DCH+ TKY+S
Sbjct: 724 NLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVT 783
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REI++ D RFHHF +GACSCGDYW
Sbjct: 784 G----REIVVRDMQRFHHFKNGACSCGDYW 809
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 173/675 (25%), Positives = 280/675 (41%), Gaps = 213/675 (31%)
Query: 43 QVHAHLIVCGVELCAFL------------------GMFEKMPERNVFSWTSMMGMYNVLG 84
Q+HA L+V G++ FL +F+ +P +F W +++ Y+
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 85 YYEEIV------NLFYLLIDEGVY----KACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
++++ + L + D + KACS L ++G+ V+ + + F+ + V+
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQN 158
Query: 135 PVLDMFIKCGRMEMASGEFEE--------------------------------------- 155
++ ++ KC R+ A FE
Sbjct: 159 GLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDV 218
Query: 156 -----------KDFSNLSLLKHGKEIHPHHLKKD-DLESDLLVNNSLMDFYAKCRYLKVA 203
F+ L LK G+ IH +K ++E DLL+ SL YAKC + A
Sbjct: 219 KPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI--SLNTMYAKCGQVATA 276
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F K+K +L+ WNAM++GYA G+ E A++ F MI D++P+TI
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAKNGYARE------------AIDMFHEMINKDVRPDTI 324
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI-------SIQG-------- 308
S++ ++ACAQV + + ++ YV R + + ALI S++G
Sbjct: 325 SITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRT 384
Query: 309 LGTGSFVWNSLIDMYG---------------RCGAIQKN------------------EGW 335
L VW+++I YG G + N EGW
Sbjct: 385 LDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGW 444
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP 389
+F M ++ + P + Y C++DLL RAG D +K MP +P C
Sbjct: 445 WFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKK 503
Query: 390 ----DIAEHAARHLFELEPLSSG------------------------------------- 408
++ E+AA+ LF ++P ++G
Sbjct: 504 HRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCS 563
Query: 409 ------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA-------------- 448
++ +F GD SH +I ++ + S +K+ G++ A
Sbjct: 564 WVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL 623
Query: 449 CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYR 508
C HSE++A+A+GLIST G+PLR+ KNLR C +CH+ TK +SK +REI++ D R
Sbjct: 624 CSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLV----DREIVVRDTNR 679
Query: 509 FHHFVDGACSCGDYW 523
FHHF DG CSCGDYW
Sbjct: 680 FHHFKDGVCSCGDYW 694
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 187/704 (26%), Positives = 283/704 (40%), Gaps = 209/704 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L +S DL P+ + TYA + G +H +V G + LG
Sbjct: 109 LRKSTDL-KPN--SSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYF 165
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------- 100
+F++MPE++ W +M+ Y Y E + +F LI+E
Sbjct: 166 KFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLL 225
Query: 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG---EFEEK 156
+ A +EL++ R+G ++ + V + ++ KCG+++M S EF +
Sbjct: 226 DILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKP 285
Query: 157 DFSNLSLLKHG--------------KE----------------------------IHPHH 174
D + + HG KE IH +
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYC 345
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
LK + L S V+ +L Y+K ++ A F + +K L SWNAM++GY
Sbjct: 346 LKSNFL-SHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY--------- 395
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
TQ G E A+ F M +++ PN ++++ +L+ACAQ+ LGK +H V +
Sbjct: 396 ---TQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFE 452
Query: 295 LSTGVGIALISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK-------- 331
S V ALI + WN++I YG G Q+
Sbjct: 453 SSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEM 512
Query: 332 -------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
EG F M Y EP+++ Y CMVD+L RAG
Sbjct: 513 LNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGH 572
Query: 367 FDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------KV 410
L F++ M EP S+ C + ++A + LFEL+P + G +
Sbjct: 573 LQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNI 632
Query: 411 HS-------------------------------------FIAGDTSHSLVHKISEKLMRL 433
HS F +GD SH V +I EKL +L
Sbjct: 633 HSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKL 692
Query: 434 YSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
++++ GY + + HSE+LA+AFGLI+T PG+ +R+IKNLR+C
Sbjct: 693 EGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVC 752
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ TK +SK ER I++ D RFHHF DG CSCGDYW
Sbjct: 753 LDCHTVTKLISKIT----ERVIVVRDANRFHHFKDGVCSCGDYW 792
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 171/656 (26%), Positives = 286/656 (43%), Gaps = 177/656 (26%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKMPERN 69
+F+ C +L+ ++G Q+H V G+++ AF+ +F++M +++
Sbjct: 122 LFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKD 181
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN 129
V + ++++ Y G EE+V + SE++ + ++ + +
Sbjct: 182 VVTCSALLCAYARKGCLEEVVRIL------------SEMESSGIEANIVSWNGILSGFNR 229
Query: 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHHLKKDDLESDLL 185
+ + + MF K + + + +L G+ IH + +K+ L+ D
Sbjct: 230 SGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLK-DKC 288
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-----------FREE- 233
V ++++D Y K ++ F++ + NA + G + G F+E+
Sbjct: 289 VISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQT 348
Query: 234 -----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
I G Q G ALE F M ++PN +++ +L AC + G+
Sbjct: 349 MELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGR 408
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQG--------------LGTGSFV-WNSLID---MYG 324
HG+ +R H+ + VG ALI + + T + V WNSL++ M+G
Sbjct: 409 STHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHG 468
Query: 325 R-----------------------------CGAIQ-KNEGWRYFEMMKKEYNMEPAMEQY 354
+ CG + +EGW+YF+MM +EY ++P +E Y
Sbjct: 469 KAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHY 528
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
CMV+LL RAG+ + + +K+MPFEP S C N D+AE AA LF LEP
Sbjct: 529 SCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEP 588
Query: 405 LSSG-------------------------------------------KVHSFIAGDTSHS 421
+ G +V++ +AGD SH
Sbjct: 589 ENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHP 648
Query: 422 LVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPG 467
+ +I+EK+ + E++K G+ + GHSEKLA+ FGL++T G
Sbjct: 649 QIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDG 708
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+PL+VIKNLR+CGDCH+ K++S REI + D RFHHF DG CSCGD+W
Sbjct: 709 TPLQVIKNLRICGDCHAVIKFISSYAG----REIFIRDTNRFHHFKDGICSCGDFW 760
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 170/637 (26%), Positives = 273/637 (42%), Gaps = 191/637 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F++M ER+V SW S++ Y G E+ +++F ++ G V+ C++ +
Sbjct: 252 VFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRL 311
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA--------------------- 149
+G+ V+ + F +LDM+ KCG ++ A
Sbjct: 312 ISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAG 371
Query: 150 ------SGE----FEEKDFSNLS-----------------LLKHGKEIHPHHLKKDDLES 182
+GE FEE + +S LL GK +H +K++DL
Sbjct: 372 YAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH-EWIKENDLGF 430
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V+N+LMD YAKC ++ A FS+++ K ++SWN ++ GY+ + E
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANE--------- 481
Query: 243 GETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL F+ +++ P+ +++ VL ACA + F G+EIHGY++R+ V
Sbjct: 482 ---ALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN 538
Query: 302 ALISI--------------QGLGTGSFV-WNSLIDMYG---------------RCGAIQK 331
+L+ + + + V W +I YG R I+
Sbjct: 539 SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 598
Query: 332 NE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
+E GWR+F +M+ E +EP +E Y C+VD+LAR G F
Sbjct: 599 DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRF 658
Query: 374 MKKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLSSG--------------- 408
++ MP P + A C + +AE A +FELEP ++G
Sbjct: 659 IENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKW 718
Query: 409 ----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
+V+ F+AGD+S+ I L ++ + + +
Sbjct: 719 EQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEE 778
Query: 441 GYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY K CGHSEKLA+A G+IS+ G +RV KNLR+CGDCH
Sbjct: 779 GYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMA 838
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK + REI++ D+ RFH F DG CSC +W
Sbjct: 839 KFMSKLTR----REIVLRDSNRFHQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 172/664 (25%), Positives = 271/664 (40%), Gaps = 213/664 (32%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF---- 58
++N + + M + TY I + C +L +LELG Q+H+ +I +L A+
Sbjct: 471 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 530
Query: 59 -LGMFEKMPE-------------RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--- 101
+ M+ K+ + ++V SWT+M+ Y + ++ + F ++D G+
Sbjct: 531 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSD 590
Query: 102 -------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA----- 149
AC+ L+ + G+ ++ F + + ++ ++ +CG++E +
Sbjct: 591 EVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFE 650
Query: 150 -------------------SGEFEE------------------------KDFSNLSLLKH 166
SG EE K S + +K
Sbjct: 651 QTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQ 710
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK++H + K +S+ V N+L+ YAKC + A +F ++ K+ VSWNA++ Y+
Sbjct: 711 GKQVHAV-ITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 769
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
GF G AL+ F +MI ++++PN ++L GVL+AC+ +
Sbjct: 770 KHGF------------GSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI----------- 806
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
L+D +G YFE M EY
Sbjct: 807 -------------------------------GLVD-----------KGIAYFESMNSEYG 824
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAA 396
+ P E Y C+VD+L RAG F+++MP +P + C N +I E AA
Sbjct: 825 LSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAA 884
Query: 397 RHLFELEPLSSG-------------------------------------------KVHSF 413
HL ELEP S +HSF
Sbjct: 885 HHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSF 944
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMK-------------RIPACG-HSEKLALAF 459
GD +H L +I E L +IGY++ + P HSEKLA++F
Sbjct: 945 YVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISF 1004
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GL+S P+ V+KNLR+C DCH+ K+VSK REII+ D YRFHHF GACSC
Sbjct: 1005 GLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSN----REIIVRDAYRFHHFEGGACSC 1060
Query: 520 GDYW 523
DYW
Sbjct: 1061 KDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 182/637 (28%), Positives = 276/637 (43%), Gaps = 195/637 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY L+ C ++L ++VH H++ G + FL +F+K
Sbjct: 79 TYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG--KDVYDYMIS 123
+R ++ W ++ + G+ EE++ L++ K +R+G D + Y
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYW--------------KMNRIGVESDRFTYTYV 184
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+K ACV +C ++ L GKEIH H L + S
Sbjct: 185 LK----ACVAS-------EC----------------TVNHLMKGKEIHAH-LTRRGYSSH 216
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ + +L+D YA+ + A F + +++VSW+AM+A YA + G
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYA------------KNGKA 264
Query: 244 ETALEFFSRMIQ--TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL F M++ D PN++++ VL ACA + + GK IHGY+LR + V
Sbjct: 265 FEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVIS 324
Query: 302 ALISIQG----LGTGSFV-----------WNSLIDMYGRCG----AIQ------------ 330
AL+++ G L G V WNSLI YG G AIQ
Sbjct: 325 ALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASP 384
Query: 331 -----------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
EG R FE M +++ ++P +E Y CMVDLL RA + D+
Sbjct: 385 TPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKM 444
Query: 374 MKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG--------------- 408
++ M EP S C N ++AE A+R LF LEP ++G
Sbjct: 445 VQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMW 504
Query: 409 ----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
K++SF++ D + L+ +I L++L ++K+
Sbjct: 505 DEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEK 564
Query: 441 GYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY+ + GHSEKLALAFGLI+TS G P+R+ KNLR+C DCH T
Sbjct: 565 GYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFT 624
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK E+EI++ D RFH F +G CSCGDYW
Sbjct: 625 KFISKF----MEKEILVRDVNRFHRFKNGVCSCGDYW 657
|
Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 177/646 (27%), Positives = 273/646 (42%), Gaps = 195/646 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-VELCAFLG---------------- 60
PDE T++ L C L L G ++HA+ + G ++ +F+G
Sbjct: 300 PDEFTISSVL--PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 357
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
+F+ M +R + W +M+ Y+ + +E + LF G+ ++ L + V
Sbjct: 358 RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI-----GMEESAGLLANSTTMAGVV 412
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
ACV+ SG F K+ + ++K G
Sbjct: 413 P----------ACVR----------------SGAFSRKEAIHGFVVKRG----------- 435
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
L+ D V N+LMD Y++ + +A F K++ + LV+WN M+ GY E+
Sbjct: 436 -LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLL 494
Query: 239 QYGDGETALEFFSRMI-----QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
++ R + + ++PN+I+L +L +CA + GKEIH Y +++++
Sbjct: 495 H------KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 548
Query: 294 QLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQK------- 331
VG AL+ + Q WN +I YG G Q+
Sbjct: 549 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRM 608
Query: 332 --------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+EG R F +MK +Y +EP+ + Y C+VDLL RAG
Sbjct: 609 MMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAG 668
Query: 366 QFDDTLNFMKKMP--FEPSSAEPC---------NPDIAEHAARHLFELEP---------- 404
+ + M MP F + A N +I E AA++L +LEP
Sbjct: 669 RIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLA 728
Query: 405 ---LSSG------------------------------KVHSFIAGDTSHSLVHKISEKLM 431
S+G +VH F+AGD+SH K+S L
Sbjct: 729 NIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLE 788
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
L+ ++K GY+ K I CGHSEKLA+AFG+++TSPG+ +RV KNLR
Sbjct: 789 TLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLR 848
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH TK++SK +REII+ D RFH F +G CSCGDYW
Sbjct: 849 VCNDCHLATKFISKIV----DREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 168/633 (26%), Positives = 263/633 (41%), Gaps = 165/633 (26%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVE------------LCAFLGMFEKMPERNVF---- 71
+ + C + +L G VH ++ G++ LGM K+ NVF
Sbjct: 111 VLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMP 170
Query: 72 SWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNAC 131
TS G +V E + F + V++ KDV Y I +
Sbjct: 171 QRTSNSGDEDVKA--ETCIMPFGIDSVRRVFEVMPR-------KDVVSYNTIIAGYAQSG 221
Query: 132 VKRPVLDMFIKCGRMEMASGEFEEKD----FSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
+ L M + G ++ F FS + GKEIH + ++K ++SD+ +
Sbjct: 222 MYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKG-IDSDVYIG 280
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
+SL+D YAK ++ + FS++ + +SWN+++AGY Q G AL
Sbjct: 281 SSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGY------------VQNGRYNEAL 328
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI- 306
F +M+ ++P ++ S V+ ACA + LGK++HGYVLR + + AL+ +
Sbjct: 329 RLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMY 388
Query: 307 -------------------------------------------------QGLGTGSFVWN 317
QG+ +
Sbjct: 389 SKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFV 448
Query: 318 SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+++ G + +E W YF M K Y + +E Y + DLL RAG+ ++ NF+ KM
Sbjct: 449 AVLTACSHVGLV--DEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKM 506
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
EP+ + C N ++AE A +F ++ + G
Sbjct: 507 CVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMA 566
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
K H F++GD SH + KI+E L + +++K GY+
Sbjct: 567 KLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVA 626
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
KR GHSE+LA+AFG+I+T PG+ +RV KN+R+C DCH K++S
Sbjct: 627 DTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFIS 686
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K EREII+ DN RFHHF G CSCGDYW
Sbjct: 687 KIT----EREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 523 | ||||||
| 296083884 | 729 | unnamed protein product [Vitis vinifera] | 0.948 | 0.680 | 0.423 | 1e-149 | |
| 225435852 | 972 | PREDICTED: pentatricopeptide repeat-cont | 0.915 | 0.492 | 0.322 | 4e-84 | |
| 328774763 | 820 | pentatricopeptide repeat protein 79 [Fun | 0.954 | 0.608 | 0.287 | 1e-65 | |
| 147767942 | 929 | hypothetical protein VITISV_016435 [Viti | 0.638 | 0.359 | 0.367 | 1e-65 | |
| 359483532 | 824 | PREDICTED: pentatricopeptide repeat-cont | 0.850 | 0.540 | 0.294 | 2e-65 | |
| 148909481 | 795 | unknown [Picea sitchensis] | 0.933 | 0.613 | 0.263 | 3e-64 | |
| 225449798 | 849 | PREDICTED: pentatricopeptide repeat-cont | 0.923 | 0.568 | 0.272 | 6e-63 | |
| 168045266 | 804 | predicted protein [Physcomitrella patens | 0.954 | 0.620 | 0.276 | 2e-62 | |
| 224073070 | 704 | predicted protein [Populus trichocarpa] | 0.923 | 0.686 | 0.276 | 7e-62 | |
| 449465002 | 926 | PREDICTED: pentatricopeptide repeat-cont | 0.835 | 0.471 | 0.300 | 3e-61 |
| >gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 315/744 (42%), Positives = 401/744 (53%), Gaps = 248/744 (33%)
Query: 13 MDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------ 60
MDLTNPDEC YA I Q+C KL NL LG QVHA L+V GV++C FLG
Sbjct: 1 MDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC 60
Query: 61 ------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKA 104
MF+KM ERNVFSWT++M MY LG YEE + LFYL+++EGV +KA
Sbjct: 61 VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKA 120
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF------ 158
CSELK++RVGKDVYDYM+SI FEGN+CVK +LDMFIKCGRM++A FEE +F
Sbjct: 121 CSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMW 180
Query: 159 ------------------------------------------SNLSLLKHGKEIHPHHLK 176
+NLSLL+HG+EIH + +K
Sbjct: 181 NIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIK 240
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
++L+SDLLV NSL+D+YAKCR ++VA KF IKQ LVSWNAMLA +TG
Sbjct: 241 VEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLA----------VTG 290
Query: 237 FTQYGDGETALEFFSRM-----------------------------------------IQ 255
FTQYGDG+ ALEFF RM
Sbjct: 291 FTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNL 350
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF- 314
++++ NT+++ L AC+++ + GKEIH +++R + + +LI + G GS
Sbjct: 351 SNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYG-RCGSIQ 409
Query: 315 ---------------VWNSLIDMYG---------------RCGAIQKN------------ 332
WN +I +YG R ++ N
Sbjct: 410 KSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACS 469
Query: 333 ------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE- 385
EGW+YF+MMK EY M+PA+EQY CMVDLL+RAGQF++TL F++KMPFEP++A
Sbjct: 470 HSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVW 529
Query: 386 ---------PCNPDIAEHAARHLFELEPLSSG---------------------------- 408
CNPD+AE+AAR+LFELEP SSG
Sbjct: 530 GSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKER 589
Query: 409 ---------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---------- 443
K+HSF+ GDTSH L+ +IS K+ LY +IK+IGY+
Sbjct: 590 GVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDV 649
Query: 444 ----KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERER 499
K CGHSEK+ALAFGLIST+ G+PLR+IKNLR+CGDCHS TK++SK EK R
Sbjct: 650 DEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEK----R 705
Query: 500 EIIMIDNYRFHHFVDGACSCGDYW 523
+IIM DNYRFHHFVDG CSCGDYW
Sbjct: 706 DIIMRDNYRFHHFVDGVCSCGDYW 729
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 213/660 (32%), Positives = 314/660 (47%), Gaps = 181/660 (27%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI---------VCGVELCAFL 59
+ + M L ++T A C L+ L G ++H + I + G L +
Sbjct: 349 VFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYY 408
Query: 60 GM----------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY----------LLIDE 99
F + + ++ SW +M+ Y + G +EE + L ++
Sbjct: 409 AKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWN 468
Query: 100 GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159
G+ ++ D + + + M S+ + N L CG++
Sbjct: 469 GLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGAL---AACGQVRN----------- 514
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
LK GKEIH + L+ + +E V ++L+ Y+ C L+VA FS++ + +V WN
Sbjct: 515 ----LKLGKEIHGYVLR-NHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWN 569
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
++++ A Q G AL+ M ++++ NT+++ L AC+++ +
Sbjct: 570 SIISACA------------QSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALR 617
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMY 323
GKEIH +++R + + +LI + G GS WN +I +Y
Sbjct: 618 QGKEIHQFIIRCGLDTCNFILNSLIDMYGR-CGSIQKSRRIFDLMPQRDLVSWNVMISVY 676
Query: 324 G---------------RCGAIQKN------------------EGWRYFEMMKKEYNMEPA 350
G R ++ N EGW+YF+MMK EY M+PA
Sbjct: 677 GMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPA 736
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLF 400
+EQY CMVDLL+RAGQF++TL F++KMPFEP++A CNPD+AE+AAR+LF
Sbjct: 737 VEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLF 796
Query: 401 ELEPLSSG-------------------------------------------KVHSFIAGD 417
ELEP SSG K+HSF+ GD
Sbjct: 797 ELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGD 856
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIS 463
TSH L+ +IS K+ LY +IK+IGY+ K CGHSEK+ALAFGLIS
Sbjct: 857 TSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLIS 916
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
T+ G+PLR+IKNLR+CGDCHS TK++SK EK R+IIM DNYRFHHFVDG CSCGDYW
Sbjct: 917 TTAGTPLRIIKNLRVCGDCHSATKFISKVEK----RDIIMRDNYRFHHFVDGVCSCGDYW 972
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica] | Back alignment and taxonomy information |
|---|
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 204/710 (28%), Positives = 299/710 (42%), Gaps = 211/710 (29%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---- 60
N+ L+Q L PD+ T+ I C L G +VH ++ G+ A +G
Sbjct: 131 NLFTLMQQEGL-EPDK--FTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALI 187
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----- 101
+F+ M R+ SWT++ G Y GY +E + ++ ++ EGV
Sbjct: 188 SMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRI 247
Query: 102 -----YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA------- 149
AC L GK ++ ++ + + V + M+IKCG ++ A
Sbjct: 248 TYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECL 307
Query: 150 -----------------SGEFEEKDFSNLSLLKH------------------------GK 168
SG+ EE +LK GK
Sbjct: 308 PNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGK 367
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
EIH +K D L SD+ N+L++ Y+K +K A F ++ ++ +VSW A++ GYA
Sbjct: 368 EIHARAVK-DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADC 426
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
G + + F+ F +M+Q ++ N I+ VL AC+ K GKEIH V
Sbjct: 427 G--QVVESFST----------FKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEV 474
Query: 289 LRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCG----AI 329
++ I V AL+S+ +G+ T V WN+LI + G A+
Sbjct: 475 VKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEAL 534
Query: 330 QK-----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
QK EG R F M+K+Y + P + Y CMVD+
Sbjct: 535 QKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDI 594
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-- 408
LARAG + + + MPF+PS+A C N +I E AA +LEP ++G
Sbjct: 595 LARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTY 654
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
+VHSF+AGD SH +I
Sbjct: 655 VSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIY 714
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
+L L +IK +GY+ K C HSEKLA+A+GLIST P +P+RV
Sbjct: 715 SELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVS 774
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C DCH+ TK++SK REII D +RFHHF +G CSCGDYW
Sbjct: 775 KNLRVCTDCHTATKFISKITG----REIIARDAHRFHHFKNGECSCGDYW 820
|
Source: Funaria hygrometrica Species: Funaria hygrometrica Genus: Funaria Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 160/435 (36%), Positives = 228/435 (52%), Gaps = 101/435 (23%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG- 60
V+ N +LL SMDLTNPDEC YA I Q+C KL NL LG QVHA L+V GV++C FLG
Sbjct: 69 VLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGS 128
Query: 61 -----------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-- 101
MF+KM ERNVFSWT++M MY LG YEE + LFYL+++EGV
Sbjct: 129 RLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRP 188
Query: 102 --------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153
+KACSELK++RVGKDVYDYM+SI FEGN+CVK +LDMFIKCGRM++A F
Sbjct: 189 DHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFF 248
Query: 154 EEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHC----KFSK 209
EE +F KD +++V+ + +K + K C K S
Sbjct: 249 EEIEF------------------KDVFMWNIMVSG----YTSKGEFKKALKCISDMKLSG 286
Query: 210 IKQKHLVSWNAMLAGYALGGFREE------------------------ITGFTQYGDGET 245
+K V+WNA+++GYA G EE I G Q G
Sbjct: 287 VKPDQ-VTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFE 345
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL F +M+ ++PN+I+++ ++AC + + G+EIHGY ++
Sbjct: 346 ALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIK--------------- 390
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
++ L + V NSL+D Y +C +++ R F M+K + + + M+ A G
Sbjct: 391 VEELDSDLLVGNSLVDYYAKCRSVEVAR--RKFGMIK-----QTDLVSWNAMLAGYALRG 443
Query: 366 QFDDTLNFMKKMPFE 380
++ + + +M F+
Sbjct: 444 SHEEAIELLSEMKFQ 458
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 187/636 (29%), Positives = 282/636 (44%), Gaps = 191/636 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+++ +R+V SW SM+ Y G E+ ++LF ++ G V CS
Sbjct: 207 LFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGM 266
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---------------- 154
+G+ ++ Y I F + +LDM+ K G + A FE
Sbjct: 267 LLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAG 326
Query: 155 --EKDFSNLS------------------------------LLKHGKEIHPHHLKKDDLES 182
+ S++S LL++GK++H +++K++ ++S
Sbjct: 327 YAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVH-NYIKENKMQS 385
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
DL V+N+LMD YAKC + AH FS+++ K +VSWN M+ GY+ E
Sbjct: 386 DLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNE--------- 436
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL F M Q + +PN+I+++ +L ACA + + G+EIHG++LR+ L V A
Sbjct: 437 ---ALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANA 492
Query: 303 LISI----QGLGTGSFV-----------WNSLIDMYG---------------RCGAIQKN 332
L+ + LG + W +I YG R I+ +
Sbjct: 493 LVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPD 552
Query: 333 E------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
E GW +F MM+ +EP E Y C+VDLLARAG F+
Sbjct: 553 EVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFI 612
Query: 375 KKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLSSG---------------- 408
K MP EP + A C + +AE A H+FELEP ++G
Sbjct: 613 KMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWE 672
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
KVH F+ GD+SH L +KI L + + +K+ G
Sbjct: 673 EVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEG 732
Query: 442 YM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
+ K + CGHSEK+A+AFG++S PG +RV KNLR+CGDCH K
Sbjct: 733 HFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAK 792
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++SK K R+II+ D+ RFHHF DG+CSC +W
Sbjct: 793 FMSKMVK----RDIILRDSNRFHHFKDGSCSCRGHW 824
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 184/698 (26%), Positives = 295/698 (42%), Gaps = 210/698 (30%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------- 60
NPD+ + + + + C ++L+ G +VH +I G E +G
Sbjct: 117 NPDK--LVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENA 174
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
+F++MP+R+V SW +++ Y+ G E + LF + G V C+ L
Sbjct: 175 RQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHL 234
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS------ 162
GK ++ Y I E + V +++M+ KCG + A FE +++
Sbjct: 235 LALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAII 294
Query: 163 ------------------------------------------LLKHGKEIHPHHLKKDDL 180
L+ G++IH + ++
Sbjct: 295 GGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIR-SGF 353
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
ES+ +V N+L++ YAKC + A+ F ++ +K++V+WNA+++GY +Q+
Sbjct: 354 ESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGY------------SQH 401
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G AL F M ++P++ ++ VL ACA + GK+IHGY +R + + VG
Sbjct: 402 GHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVG 461
Query: 301 IALISIQG----LGTGS-----------FVWNSLIDMYGRCG------------------ 327
L+ I + T W ++I YG G
Sbjct: 462 TGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTK 521
Query: 328 ---------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
A ++G +YF+ MK +Y + P +E Y C+VDLL RAG D+
Sbjct: 522 LDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANG 581
Query: 373 FMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG-------------- 408
+K M EP + CN ++ E AA+HLFEL+P ++G
Sbjct: 582 IIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQR 641
Query: 409 -----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
V +F+ GD +H +I L LY +++K
Sbjct: 642 WEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRK 701
Query: 440 IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
GY+ K HSEKLA++FG+I+TSPG P+R++KNLR+C DCH+
Sbjct: 702 AGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNA 761
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TK++SK REII+ D RFHH +G CSCGDYW
Sbjct: 762 TKFISKIVG----REIIVRDANRFHHVKNGFCSCGDYW 795
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 188/690 (27%), Positives = 296/690 (42%), Gaps = 207/690 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
+ + + C +L G ++H LIV G F MF++M
Sbjct: 177 NFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRM 236
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
PER++ W +++ Y G+ + + L + +EG + A +++ R+G+
Sbjct: 237 PERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGR 296
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---------------------- 153
++ Y + FE V ++DM+ KCG + A F
Sbjct: 297 SIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNG 356
Query: 154 --------------EEKDFSNLSLL------------KHGKEIHPHHLKKDDLESDLLVN 187
E+ + +N++++ + G+ +H L + +L SD+ V
Sbjct: 357 DPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVH-KLLDQLELGSDVSVM 415
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ Y+KC+ + +A F ++ K LVSWNAM+ GYA Q G A+
Sbjct: 416 NSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYA------------QNGRINEAI 463
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
++F +M +++P++ ++ V+ A A++ K IHG V+R + + V AL+ +
Sbjct: 464 DYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMY 523
Query: 308 G----LGTGS-----------FVWNSLIDMYGRCG---------------AIQKNE---- 333
+ T WN++ID YG G I+ NE
Sbjct: 524 AKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFL 583
Query: 334 --------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
G++YF MKK+Y +EPAM+ Y MVDLL RA + ++ +F++KMP
Sbjct: 584 CVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPI 643
Query: 380 EPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------------------- 408
EP+ + C N ++ E AA +F+L+P G
Sbjct: 644 EPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARV 703
Query: 409 ----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
+VH+F +G TSH KI L L + IK GYM
Sbjct: 704 RTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDT 763
Query: 447 PAC-------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
+ HSEKLA+AF L++TSPG+ + + KNLR+CGDCH+ TKY+S
Sbjct: 764 NSVHDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVT 823
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
K REII+ D RFHHF DG CSCGDYW
Sbjct: 824 K----REIIVRDMRRFHHFKDGTCSCGDYW 849
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 196/710 (27%), Positives = 295/710 (41%), Gaps = 211/710 (29%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---- 60
N+ L+Q L PD+ T+ I C L G ++H ++ G+ +G
Sbjct: 115 NLFTLMQQERL-EPDK--FTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALI 171
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE------- 99
+F+ M R+ SWT++ G Y GY EE + ++ ++ E
Sbjct: 172 SMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRI 231
Query: 100 ---GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA------- 149
V AC L GK ++ +++ ++ + V + M++KCG + A
Sbjct: 232 TYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECL 291
Query: 150 -----------------SGEFEEK--------------DFSNLSL----------LKHGK 168
SG+ EE D + + L GK
Sbjct: 292 SYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGK 351
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
EIH KD L SD+ N+L++ Y+K +K A F ++ ++ +VSW +L YA
Sbjct: 352 EIHAR-AAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYA-- 408
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+ + FT F +M+Q ++ N I+ VL AC+ K GKEIH V
Sbjct: 409 DCDQVVESFTT----------FKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEV 458
Query: 289 LRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCG----AI 329
++ + V AL+S+ +G+ V WN+LI G+ G A+
Sbjct: 459 VKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEAL 518
Query: 330 QK-----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
Q+ EG R F M K+Y + P + Y CMVD+
Sbjct: 519 QRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDI 578
Query: 361 LARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG-- 408
LARAG + + + +P +PS+A CN +I E AA H +LEP ++G
Sbjct: 579 LARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLY 638
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
+VHSF+A D SH +I
Sbjct: 639 VSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIY 698
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
+L L ++K +GY+ K C HSEKLA+A+GLIST PG+P+R+
Sbjct: 699 AELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRIS 758
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C DCH+ TK++SK K REII D +RFHHF +G CSCGDYW
Sbjct: 759 KNLRVCTDCHTATKFISKITK----REIIARDAHRFHHFKNGECSCGDYW 804
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa] gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 191/690 (27%), Positives = 292/690 (42%), Gaps = 207/690 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGV--ELCAFLG----------------MFEKM 65
+ + + C ++L+ G ++H +I G L A G MF++M
Sbjct: 32 NFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRM 91
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
PER++ W +M+ Y G+ + + L + +EG + A ++ + R+G
Sbjct: 92 PERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGM 151
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----------------- 158
V+ Y++ FE V ++DM+ KCG + +A F+ D
Sbjct: 152 AVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSG 211
Query: 159 -------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
++L L+ GK +H + + L+SD+ V
Sbjct: 212 DAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKL-VDQLKLDSDVSVM 270
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ Y+KC+ + +A F ++ K LVSWNAM+ GYA G E AL
Sbjct: 271 NSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNE------------AL 318
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI- 306
F M +++P++ ++ V+ A A++ + K IHG V+R + + V AL+ +
Sbjct: 319 NAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMY 378
Query: 307 ---QGLGTGS-----------FVWNSLIDMYG---------------RCGAIQKN----- 332
+ T WN++ID YG + G I+ N
Sbjct: 379 AKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFL 438
Query: 333 -------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
EG +FE MKK+Y +EP M+ Y MVDLL RAG+ + +F++KMP
Sbjct: 439 CALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPI 498
Query: 380 EP------SSAEPC----NPDIAEHAARHLFELEPLSSG--------------------- 408
+P + C N D+ E AA +F+L P G
Sbjct: 499 KPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKV 558
Query: 409 ----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
+VHSF +G TSH KI L L EI+ GY+
Sbjct: 559 RTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDT 618
Query: 447 PAC-------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
+ HSEKLA+AFGL++TS G+P+ + KNLR+CGDCH+ TKY+S
Sbjct: 619 NSIHDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVT 678
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D +RFH F DG CSCGDYW
Sbjct: 679 G----REIIVRDMHRFHLFKDGVCSCGDYW 704
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cucumis sativus] gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 191/636 (30%), Positives = 274/636 (43%), Gaps = 199/636 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIV--------------------CGVELCAFLGMFE 63
T +F C + L LG +H++ I CG +L + + +FE
Sbjct: 354 TMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCG-DLNSAIRVFE 412
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
+M E+ V SWTSM + GY E + +G K E+K V DVY +
Sbjct: 413 RMDEKTVVSWTSM-----ITGYVRE-------GLSDGAIKLFDEMKSRGVVPDVY----A 456
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+ NAC +G LK GK +H ++++++LE++
Sbjct: 457 VTSILNACA----------------INGN-----------LKSGKIVH-DYIRENNLETN 488
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
V+N+L D YAKC +K AH FS +K+K ++SWN M+ GY E
Sbjct: 489 SFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNE---------- 538
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL F+ M Q + +P+ +++ +L ACA + G+EIHGY LR+ V A+
Sbjct: 539 --ALTLFAEM-QRESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAV 595
Query: 304 ISIQGLGTGSFV----------------WNSLIDMYGRCG----AIQK------------ 331
+ + + G V W +I YG G AI
Sbjct: 596 VDMY-VKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPD 654
Query: 332 -----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
+EGW+ F +MKKE +EP +E Y CMVDLLAR G F+
Sbjct: 655 EVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFI 714
Query: 375 KKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLSSG---------------- 408
K MP +P + A C + +AE A +FELEP ++G
Sbjct: 715 KAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWE 774
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
K++ F+AGD S KI L RL S++K+ G
Sbjct: 775 EVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEG 834
Query: 442 YM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y K + CGHSEKLA+AFG+++ PG +RV KNLR+CGDCH K
Sbjct: 835 YSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAK 894
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++SK+ REII+ D+ RFHHF DG+CSC YW
Sbjct: 895 FMSKSA----SREIILRDSSRFHHFKDGSCSCRGYW 926
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 523 | ||||||
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.210 | 0.127 | 0.390 | 3.8e-50 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.646 | 0.341 | 0.303 | 7.2e-47 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.632 | 0.371 | 0.302 | 1.4e-46 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.212 | 0.141 | 0.410 | 3.7e-46 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.640 | 0.414 | 0.289 | 2.4e-45 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.403 | 0.248 | 0.298 | 4.5e-45 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.214 | 0.126 | 0.454 | 2.3e-43 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.630 | 0.500 | 0.309 | 6.5e-42 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.625 | 0.519 | 0.304 | 7e-42 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.636 | 0.334 | 0.297 | 3.9e-41 |
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 227 (85.0 bits), Expect = 3.8e-50, Sum P(4) = 3.8e-50
Identities = 50/128 (39%), Positives = 68/128 (53%)
Query: 408 GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA--------------CGHSE 453
GKVH+F++ D H +I+ L Y ++ ++G K + CGHSE
Sbjct: 743 GKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSE 802
Query: 454 KLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKXXXXXXXXXXDNYRFHHFV 513
+ A+AFGLI+T PG P+ V KNL MC +CH K++SK + D FHHF
Sbjct: 803 RKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVR----DAEHFHHFK 858
Query: 514 DGACSCGD 521
DG CSCGD
Sbjct: 859 DGECSCGD 866
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 7.2e-47, Sum P(3) = 7.2e-47
Identities = 120/395 (30%), Positives = 192/395 (48%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K S L+ L+ G++IH + LK + +D V SL+D YAKC + A+C F +I+ ++
Sbjct: 626 KASSCLTALEQGRQIHANALKLN-CTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNI 684
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
+WNAML G A Q+G+G+ L+ F +M ++P+ ++ GVL+AC+
Sbjct: 685 TAWNAMLVGLA------------QHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHS 732
Query: 276 ----KGFKLGKEIHG-YVLR----HHIQLSTGVGIALISIQGLGT-GSFVWNSLIDMYGR 325
+ +K + +HG Y ++ H+ L+ +G A + Q S + MY
Sbjct: 733 GLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRT 792
Query: 326 CGAIQKNEGWRYF--EMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
A + +G + K +EP Y + ++ A A ++D+ + + M +
Sbjct: 793 LLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDE-MKLARTM-MKGH 850
Query: 383 SAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
+ +P + E++ K+H F+ D S+ I K+ + +IK+ GY
Sbjct: 851 KVKK-DPGFS------WIEVK----NKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGY 899
Query: 443 M--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ K HSEKLA+AFGL+ST P +P+RVIKNLR+CGDCH+ KY
Sbjct: 900 VPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKY 959
Query: 489 VSKAEKXXXXXXXXXXDNYRFHHFVDGACSCGDYW 523
++K D RFH F DG CSCGDYW
Sbjct: 960 IAKVYNREIVLR----DANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 1.4e-46, Sum P(3) = 1.4e-46
Identities = 119/393 (30%), Positives = 193/393 (49%)
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
LS L GKEIH + +K ++L +D+ V ++L+D YAKC L+++ F +I QK++++WN
Sbjct: 530 LSALAKGKEIHAYAIK-NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNV 588
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
++ Y + +G+G+ A++ M+ ++PN ++ V AAC+
Sbjct: 589 IIMAYGM------------HGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDE 636
Query: 281 GKEIHGYVLR--HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR-----------CG 327
G I YV++ + ++ S+ ++ + G L++M R G
Sbjct: 637 GLRIF-YVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLG 695
Query: 328 AIQKNEGWRYFEMMKKEY-NMEPAM-EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE 385
A + + E+ + +EP + Y + ++ + AG +D + M + E
Sbjct: 696 ASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKE 755
Query: 386 P-CNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
P C+ EH +VH F+AGD+SH K+S L L+ ++K GY+
Sbjct: 756 PGCS--WIEHG------------DEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVP 801
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
K I CGHSEKLA+AFG+++TSPG+ +RV KNLR+C DCH TK++S
Sbjct: 802 DTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFIS 861
Query: 491 KAEKXXXXXXXXXXDNYRFHHFVDGACSCGDYW 523
K D RFH F +G CSCGDYW
Sbjct: 862 KI----VDREIILRDVRRFHRFKNGTCSCGDYW 890
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 3.7e-46, Sum P(4) = 3.7e-46
Identities = 53/129 (41%), Positives = 71/129 (55%)
Query: 409 KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEK 454
KVH F D +H ++I + +++ EIKK+GY+ + HSEK
Sbjct: 662 KVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEK 721
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKXXXXXXXXXXDNYRFHHFVD 514
LA+AFGLIST + LR++KNLR+C DCH+ K++SK D RFHHF D
Sbjct: 722 LAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKL----VGREIIVRDTTRFHHFKD 777
Query: 515 GACSCGDYW 523
G CSC DYW
Sbjct: 778 GFCSCRDYW 786
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 2.4e-45, Sum P(3) = 2.4e-45
Identities = 113/391 (28%), Positives = 188/391 (48%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ LS+ H K IH + + L+ ++ V +L+D YAKC + +A F + ++H+ +W
Sbjct: 449 AELSITHHAKWIHGV-VMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTW 507
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
NAM+ GY GF G+ ALE F M + ++PN ++ V++AC+
Sbjct: 508 NAMIDGYGTHGF------------GKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLV 555
Query: 279 KLGKEIHGYVLRHH--IQLSTGVGIALISIQG-LGTGSFVWNSLIDM--------YGRC- 326
+ G + Y+++ + I+LS A++ + G G + W+ ++ M YG
Sbjct: 556 EAGLKCF-YMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAML 614
Query: 327 GAIQKNEGWRYFEMMKKE-YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE 385
GA Q ++ + E + + + P Y ++ + RA + + ++ +
Sbjct: 615 GACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRK 674
Query: 386 PCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM-- 443
P + + E++ +VHSF +G T+H KI L +L IK+ GY+
Sbjct: 675 --TPGCS------MVEIK----NEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPD 722
Query: 444 -----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492
K HSEKLA++FGL++T+ G+ + V KNLR+C DCH+ TKY+S
Sbjct: 723 TNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLV 782
Query: 493 EKXXXXXXXXXXDNYRFHHFVDGACSCGDYW 523
D RFHHF +GACSCGDYW
Sbjct: 783 ----TGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 249 (92.7 bits), Expect = 4.5e-45, Sum P(4) = 4.5e-45
Identities = 72/241 (29%), Positives = 116/241 (48%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F M ++V SW +M+ Y+ +G +E+ V LF + +E K ++ Y
Sbjct: 286 VFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEE---KIKMDVVTWSAAISGYAQ 342
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH------PHH 174
+ +E V R +L IK + + S +++ L HGKEIH P
Sbjct: 343 R-GLGYEALG-VCRQMLSSGIKPNEVTLIS---VLSGCASVGALMHGKEIHCYAIKYPID 397
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSWNAMLAGYALGGFRE 232
L+K+ + +V N L+D YAKC+ + A F + K++ +V+W M+ GY+
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYS------ 451
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQ--PNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
Q+GD ALE S M + D Q PN ++S L ACA + ++GK+IH Y LR
Sbjct: 452 ------QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALR 505
Query: 291 H 291
+
Sbjct: 506 N 506
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 2.3e-43, Sum P(4) = 2.3e-43
Identities = 60/132 (45%), Positives = 73/132 (55%)
Query: 408 GK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---------------KRIPACGH 451
GK VH F +GD S I + L LYS + K GY+ KR CGH
Sbjct: 755 GKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGH 814
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKXXXXXXXXXXDNYRFHH 511
SE+LA+AFGL++T PG+PL+V+KNLR+CGDCH TK +SK D RFH
Sbjct: 815 SERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKI----VGREILVRDANRFHL 870
Query: 512 FVDGACSCGDYW 523
F DG CSC D W
Sbjct: 871 FKDGTCSCKDRW 882
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 6.5e-42, Sum P(2) = 6.5e-42
Identities = 123/397 (30%), Positives = 184/397 (46%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
S+ L+ GK IH ++ LE D++V S++D Y KC ++ A F ++K K++ SW
Sbjct: 298 SHSGALRIGKCIHDQVIRMG-LEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSW 356
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ---- 274
AM+AGY + +G ALE F MI + ++PN I+ VLAAC+
Sbjct: 357 TAMIAGYGM------------HGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLH 404
Query: 275 VKGFKLGKEIHGYV-----LRHH---IQLSTGVGIA-----LISIQGLGTGSFVWNSLID 321
V+G++ + G L H+ + L G LI + S +W+SL+
Sbjct: 405 VEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLL- 463
Query: 322 MYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
C I KN + + + ++ + Y + + A AG++ D M
Sbjct: 464 --AAC-RIHKNVELAEISVARL-FELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMK-- 517
Query: 381 PSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
N + + L EL +G+VH F+ GD H KI E L L ++ +
Sbjct: 518 -------NRGLVKPPGFSLLEL----NGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEA 566
Query: 441 GYMKRIPA-CG-------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY+ + C HSEKLA+AFG+++T PGS + V+KNLR+C DCH+
Sbjct: 567 GYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVI 626
Query: 487 KYVSKAEKXXXXXXXXXXDNYRFHHFVDGACSCGDYW 523
K +SK D RFHHF DG CSCGDYW
Sbjct: 627 KLISKI----VDREFVVRDAKRFHHFKDGGCSCGDYW 659
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 7.0e-42, Sum P(2) = 7.0e-42
Identities = 121/398 (30%), Positives = 191/398 (47%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ L+LL+ G + H H +K D DL++NN+L+D Y KC L+ A F+++K++ +++W
Sbjct: 271 TGLALLELGMQAHVHIVKYDQ---DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITW 327
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV--- 275
+ M++G A G+ +E AL+ F RM + +PN I++ GVL AC+
Sbjct: 328 STMISGLAQNGYSQE------------ALKLFERMKSSGTKPNYITIVGVLFACSHAGLL 375
Query: 276 -KG---FKLGKEIHGY-VLRHH----IQLSTGVG-----IALISIQGLGTGSFVWNSLID 321
G F+ K+++G +R H I L G + L++ + W +L+
Sbjct: 376 EDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL- 434
Query: 322 MYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
G C +Q+N + KK ++P Y + ++ A + ++D +M
Sbjct: 435 --GAC-RVQRNMVLAEYAA-KKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDR 490
Query: 381 PSSAEP-CNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
EP C+ E+ ++H+FI GD SH + ++S+KL +L +
Sbjct: 491 GIKKEPGCS----------WIEVNK----QIHAFIIGDNSHPQIVEVSKKLNQLIHRLTG 536
Query: 440 IGYMKRIPAC-----G---------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
IGY+ G HSEKLALAFGL++ +R+ KNLR+CGDCH
Sbjct: 537 IGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVF 596
Query: 486 TKYVSKAEKXXXXXXXXXXDNYRFHHFVDGACSCGDYW 523
K SK E D R+HHF DG CSCGDYW
Sbjct: 597 CKLASKLE----IRSIVIRDPIRYHHFQDGKCSCGDYW 630
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 3.9e-41, Sum P(2) = 3.9e-41
Identities = 119/400 (29%), Positives = 194/400 (48%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
F++++ L+ G E+H ++ LESD++V ++L+D Y+KC L A F+ + ++ S
Sbjct: 629 FASVATLERGMEVHACSVRAC-LESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYS 687
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM-IQTDMQPNTISLSGVLAACAQV- 275
WN+M++GYA ++G GE AL+ F M + P+ ++ GVL+AC+
Sbjct: 688 WNSMISGYA------------RHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAG 735
Query: 276 ---KGFKLGKEI---HGYVLR--HHIQLSTGVGIA--------LISIQGLGTGSFVWNSL 319
+GFK + + +G R H ++ +G A I + +W ++
Sbjct: 736 LLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTV 795
Query: 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME-QYCCMVDLLARAGQFDDTLNFMKKMP 378
+ R + G + EM+ + +EP Y + ++ A G+++D + KKM
Sbjct: 796 LGACCRANGRKAELGKKAAEML---FQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMK 852
Query: 379 FEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
+ D+ + A + + G VH F+AGD SH I +KL L +++
Sbjct: 853 ---------DADVKKEAG---YSWVTMKDG-VHMFVAGDKSHPDADVIYKKLKELNRKMR 899
Query: 439 KIGYM--------------KRIPACGHSEKLALAFGLISTSPGS-PLRVIKNLRMCGDCH 483
GY+ K HSEKLA+AF L + + P+R++KNLR+CGDCH
Sbjct: 900 DAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCH 959
Query: 484 SPTKYVSKAEKXXXXXXXXXXDNYRFHHFVDGACSCGDYW 523
S KY+SK E D+ RFHHF DGACSC D+W
Sbjct: 960 SAFKYISKIE----GRQIILRDSNRFHHFQDGACSCSDFW 995
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 523 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-67 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-62 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-32 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-29 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 6e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-07 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 2e-67
Identities = 164/646 (25%), Positives = 258/646 (39%), Gaps = 214/646 (33%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLGM---- 61
+PD T+T + C L + LG ++H +++ G +++ LG
Sbjct: 285 DPDLMTITS--VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 62 ---FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSEL 108
F +M ++ SWT+M+ Y G ++ + + L+ + V AC+ L
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD-------- 157
D VG +++ V +++M+ KC ++ A F EKD
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462
Query: 158 ---------FSNLSLLKH---------------------------GKEIHPHHLKKDDLE 181
F L + GKEIH H L+ +
Sbjct: 463 AGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG-IG 521
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
D + N+L+D Y +C + A +F+ +K +VSWN +L GY +G
Sbjct: 522 FDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYV------------AHG 568
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
G A+E F+RM+++ + P+ ++ +L AC
Sbjct: 569 KGSMAVELFNRMVESGVNPDEVTFISLLCAC----------------------------- 599
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
R G + +G YF M+++Y++ P ++ Y C+VDLL
Sbjct: 600 ----------------------SRSGMVT--QGLEYFHSMEEKYSITPNLKHYACVVDLL 635
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS----- 406
RAG+ + NF+ KMP P A C + ++ E AA+H+FEL+P S
Sbjct: 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695
Query: 407 --------------------------------------SGKVHSFIAGDTSHSLVHKISE 428
GKVH+F+ D SH + +I+
Sbjct: 696 LLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINT 755
Query: 429 KLMRLYSEIKKIGY-------MKRIPA------CGHSEKLALAFGLISTSPGSPLRVIKN 475
L Y ++K G M I CGHSE+LA+AFGLI+T PG P+ V KN
Sbjct: 756 VLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKN 815
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
L MC +CH+ K++SK + REI + D +FHHF DG CSCGD
Sbjct: 816 LYMCENCHNTVKFISKIVR----REISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 8e-62
Identities = 148/607 (24%), Positives = 240/607 (39%), Gaps = 180/607 (29%)
Query: 36 NNLELGIQVHAHLIVCGVELCAFLG----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVN 91
+ E + +++ V+ C L +F++MPERN+ SW +++G G Y E
Sbjct: 152 SGFEPDQYMMNRVLLMHVK-CGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFA 210
Query: 92 LFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG 151
LF + ++G + R F+ R G
Sbjct: 211 LFREMWEDG----------------------------SDAEPR----TFVVMLRASAGLG 238
Query: 152 EFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211
+ G+++H LK + D V+ +L+D Y+KC ++ A C F +
Sbjct: 239 -----------SARAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMP 286
Query: 212 QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
+K V+WN+MLAGYAL G+ EE AL + M + + + + S ++
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEE------------ALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV-----------W 316
+++ + K+ H ++R L AL+ + + V W
Sbjct: 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394
Query: 317 NSLIDMYGRCGAIQK---------------------------------NEGWRYFEMMKK 343
N+LI YG G K +GW F+ M +
Sbjct: 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS------AEPC----NPDIAE 393
+ ++P Y CM++LL R G D+ +++ PF+P+ C N ++
Sbjct: 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514
Query: 394 HAARHLFELEP-------------LSSGKV------------------------------ 410
AA L+ + P SSG+
Sbjct: 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQD 574
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
HSF +GD H +I +KL L EI + GY+ +++ HSEKLA
Sbjct: 575 HSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLA 634
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+AFGLI+TS +PL++ ++ R+C DCH K+++ K REI++ D RFHHF G
Sbjct: 635 IAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTK----REIVVRDASRFHHFKLGK 690
Query: 517 CSCGDYW 523
CSCGDYW
Sbjct: 691 CSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 6e-32
Identities = 97/397 (24%), Positives = 165/397 (41%), Gaps = 108/397 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGM-------------FEKM 65
T+ + + C + +L G +VHAH++ G E + A + M F++M
Sbjct: 189 TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFY----------LLIDEGVYKACSELKDHRVGK 115
P R+ SW +M+ Y G E + LF+ L+ V AC L D R+G+
Sbjct: 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN--------------- 160
+++ Y++ F + V ++ M++ G A F + +
Sbjct: 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368
Query: 161 ---------------------------------LSLLKHGKEIHPHHLKKDDLESDLLVN 187
L L G ++H +K L S ++V
Sbjct: 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG-LISYVVVA 427
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N+L++ Y+KC+ + A F I +K ++SW +++AG L E AL
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE------------AL 475
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
FF +M+ T ++PN+++L L+ACA++ GKEIH +VLR
Sbjct: 476 IFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLR----------------T 518
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
G+G F+ N+L+D+Y RCG + N W F +K+
Sbjct: 519 GIGFDGFLPNALLDLYVRCG--RMNYAWNQFNSHEKD 553
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 6e-29
Identities = 100/384 (26%), Positives = 156/384 (40%), Gaps = 111/384 (28%)
Query: 9 LLQSMD--LTNPDECTVTYALIFQRCPKLNNLELGIQVHAH----LIVCGVELC-AFLGM 61
LL+SM DE Y +F+ C +E G +V + GV L A L M
Sbjct: 73 LLESMQELRVPVDE--DAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM 130
Query: 62 -------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSEL 108
F KMPER++FSW ++G Y GY++E + L++ ++ GV
Sbjct: 131 FVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP----- 185
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
DVY + CV R CG + L G+
Sbjct: 186 -------DVYTF---------PCVLR-------TCG---------------GIPDLARGR 207
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
E+H H ++ E D+ V N+L+ Y KC + A F ++ ++ +SWNAM++GY
Sbjct: 208 EVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY--- 263
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+ G+ LE F M + + P+ ++++ V++AC + +LG+E+HGYV
Sbjct: 264 ---------FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK----- 343
++ G V NSLI MY G+ + E + F M+
Sbjct: 315 VK----------------TGFAVDVSVCNSLIQMYLSLGSWGEAE--KVFSRMETKDAVS 356
Query: 344 --------EYNMEP--AMEQYCCM 357
E N P A+E Y M
Sbjct: 357 WTAMISGYEKNGLPDKALETYALM 380
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 6e-14
Identities = 40/123 (32%), Positives = 53/123 (43%), Gaps = 37/123 (30%)
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP--------------------ACG 450
++GD SH L+ IK G +
Sbjct: 9 KKTLSGDGSHP------TSKEELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLAS 62
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNL-RMCGDCHSPTKYVSKAEKREREREIIMIDNYRF 509
H+EK ALA+GL++T R+IK L RMCGDCH +Y++K REII+ D RF
Sbjct: 63 HAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTG----REIIVRDPSRF 112
Query: 510 HHF 512
HHF
Sbjct: 113 HHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 53/196 (27%)
Query: 13 MDLTN--PDECTVTYALIFQRCPKLNNLELGIQVH-----AHLIVCGVELCAFLGMFEK- 64
M+ N PDE T+ L C L +L++G+++H LI V A + M+ K
Sbjct: 380 MEQDNVSPDEITIASVL--SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 65 ------------MPERNVFSWTSMMGMYNVLGY------YEEIVNLFYLLIDE------- 99
+PE++V SWTS+ + G +E ++ +L+
Sbjct: 438 KCIDKALEVFHNIPEKDVISWTSI-----IAGLRLNNRCFEALIFFRQMLLTLKPNSVTL 492
Query: 100 -GVYKACSELKDHRVGKDVYDYMI--SIKFEG---NACVKRPVLDMFIKCGRMEMASGEF 153
AC+ + GK+++ +++ I F+G NA +LD++++CGRM A +F
Sbjct: 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA-----LLDLYVRCGRMNYAWNQF 547
Query: 154 --EEKDFSNLSLLKHG 167
EKD + ++L G
Sbjct: 548 NSHEKDVVSWNILLTG 563
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 30/168 (17%)
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
H++ E D + N ++ + KC L A F ++ +++L SW +
Sbjct: 148 HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI------------ 195
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
I G G+ A F M + + +L A A + + G+++H VL+
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK--- 252
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
G+ +FV +LIDMY +CG I+ + F+ M
Sbjct: 253 -------------TGVVGDTFVSCALIDMYSKCGDIE--DARCVFDGM 285
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL------------C 56
L M + T++++ + +L LE Q HA LI G L
Sbjct: 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371
Query: 57 AFLGM------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+ M F++MP +N+ SW +++ Y G + V +F +I EGV
Sbjct: 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
|
Length = 697 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 523 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.92 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.85 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.77 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.54 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.52 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.48 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.46 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.46 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.45 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.43 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.41 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.39 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.38 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.36 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.28 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.25 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.25 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.23 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.15 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.11 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.1 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.06 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.05 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.02 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.96 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.91 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.85 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.84 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.81 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.78 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.76 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.76 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.76 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.73 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.7 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.6 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.52 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.51 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.5 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.5 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.5 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.48 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.45 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.41 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.39 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.38 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.38 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.32 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.3 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.26 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.25 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.19 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.17 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.14 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.13 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.13 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.09 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.05 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.03 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.0 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.99 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.96 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.96 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.96 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.93 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.93 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.92 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 97.91 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.9 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.8 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.79 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.79 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.75 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 97.74 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.71 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.67 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.58 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.56 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.54 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.51 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.46 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.46 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.44 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.43 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.4 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.34 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.3 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.29 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.27 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.27 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.22 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.22 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.19 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.13 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.12 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.11 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.05 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.05 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 96.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.98 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.97 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 96.96 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 96.95 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 96.91 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 96.9 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 96.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.89 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.87 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 96.84 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 96.84 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.8 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 96.79 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.79 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.74 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 96.73 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.72 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.7 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.59 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.57 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.51 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 96.51 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.46 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.44 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.44 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.43 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 96.29 | |
| PLN02789 | 320 | farnesyltranstransferase | 96.25 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 96.24 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.16 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.1 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.0 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.8 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.8 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.79 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.78 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.77 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.73 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.72 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 95.66 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.62 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.58 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 95.51 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.42 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.37 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.27 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.17 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 94.81 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 94.71 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 94.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.42 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 94.31 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 94.3 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 94.26 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 94.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 94.1 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 94.07 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 94.0 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 93.94 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 93.9 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.87 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.54 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 93.51 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.49 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.48 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 93.19 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 92.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 92.85 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 92.67 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.66 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 92.56 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 92.4 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 92.04 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 91.92 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 91.87 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 91.85 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 91.83 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.16 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.02 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 90.89 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 90.87 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 90.7 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.52 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 90.35 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 90.02 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 89.52 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 89.02 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.94 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 88.84 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 88.64 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 88.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.39 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 88.38 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 87.86 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.68 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.1 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 86.8 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.48 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 86.42 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 86.39 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 86.29 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.22 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 85.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 84.75 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 84.68 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 84.47 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 84.34 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 83.92 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.33 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.29 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.52 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.69 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 81.03 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.91 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 80.8 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 80.78 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.59 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 80.39 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 80.21 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-97 Score=821.80 Aligned_cols=500 Identities=35% Similarity=0.638 Sum_probs=475.9
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH------------------Hhc
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------------------~f~ 63 (523)
++++|+++|++|+..|+.||.+||+++|++|++.+++..+.++|..|.+.|+.++..+. +|+
T Consensus 167 ~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~ 246 (857)
T PLN03077 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999999999987766 999
Q ss_pred CCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeH
Q 035847 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVK 133 (523)
Q Consensus 64 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 133 (523)
.|+.||+++||+||.+|+++|++++|+++|.+|.+.| ++.+|++.|+++.|.++|..|.+.|+.||..+|
T Consensus 247 ~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred cCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 9999999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhc------------------------------------------------cccccCchh
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEK------------------------------------------------DFSNLSLLK 165 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~------------------------------------------------~~~~~~~~~ 165 (523)
|+||++|+++|++++|.++|+++ +|+..+.++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 99999999999999999999883 888899999
Q ss_pred hHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchH
Q 035847 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245 (523)
Q Consensus 166 ~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~ 245 (523)
.|.++|..+.+. |+.|+..+||+||++|+|+|++++|.++|++|.++|+++||+||. +|+++|+.++
T Consensus 407 ~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~------------~~~~~g~~~e 473 (857)
T PLN03077 407 VGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA------------GLRLNNRCFE 473 (857)
T ss_pred HHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH------------HHHHCCCHHH
Confidence 999999998888 999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh------------------
Q 035847 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ------------------ 307 (523)
Q Consensus 246 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y------------------ 307 (523)
|+++|++|.. +++||..||+++|.+|++.|.++.+.++|..+.+.|+.+|..++|+||++|
T Consensus 474 A~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~ 552 (857)
T PLN03077 474 ALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK 552 (857)
T ss_pred HHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCC
Confidence 9999999986 699999999999999999999999999999999999988777777776666
Q ss_pred -------------------------------CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHH
Q 035847 308 -------------------------------GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCC 356 (523)
Q Consensus 308 -------------------------------~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~ 356 (523)
|+.||.+||+++|.+|++.|++ ++|.++|++|.+.+|+.|+..||++
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v--~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV--TQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH--HHHHHHHHHHHHHhCCCCchHHHHH
Confidence 5678888888888888888888 9999999999977799999999999
Q ss_pred HHHHHHhhCCHHHHHHHHHhCCCCCCCC----------CCCCHHHHHHHHHHHHhhCCCCCc------------------
Q 035847 357 MVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHAARHLFELEPLSSG------------------ 408 (523)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~m~~~p~~~----------~~~~~~~~~~~~~~l~~~~~~~~~------------------ 408 (523)
|+++|+|.|++++|.+++++|+++||.. .|+|.+.|+.+++++++++|.+++
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 9999999999999999999999999987 799999999999999999999876
Q ss_pred -------------------------ceeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCc-------------hhhh
Q 035847 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI-------------PACG 450 (523)
Q Consensus 409 -------------------------~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~-------------~~~~ 450 (523)
.+|.|++|+.+||+.++|+..|++|..+|++.||+||+ .+++
T Consensus 711 ~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~ 790 (857)
T PLN03077 711 ARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCG 790 (857)
T ss_pred HHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHh
Confidence 78999999999999999999999999999999999996 5799
Q ss_pred hhHHHHHHHccccCCCCCcEEEEecccccCCCchhhHhHhhhccccCCceEEEeeCCcccccccccccCCC
Q 035847 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521 (523)
Q Consensus 451 ~~~~la~a~~l~~~~~~~~~~i~~nl~~~~d~h~~~~~~s~~~~~~~~r~i~~~d~~~~h~~~~g~csc~~ 521 (523)
||||||+||||+++|++.||||+||||+|+|||+++|+||+++ +|+|||||.+|||||+||+|||+|
T Consensus 791 hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~----~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 791 HSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIV----RREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred ccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHh----CeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999 999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-94 Score=777.08 Aligned_cols=477 Identities=27% Similarity=0.496 Sum_probs=379.6
Q ss_pred chhHHHHHHHHhhhCC-CCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH------------------Hh
Q 035847 2 VIKNVTLLLQSMDLTN-PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MF 62 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------------------~f 62 (523)
.+++|+++|++|...+ +.||..||++++.+|++.++++.|.++|..|.+.|+.||..++ +|
T Consensus 102 ~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 181 (697)
T PLN03081 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181 (697)
T ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4689999999999864 7899999999999999999999999999999999996665544 66
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------HHHHhhccCChHHHHHHHHHHHHhcCCCCcee
Q 035847 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACV 132 (523)
Q Consensus 63 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 132 (523)
+.|++||+++||+||.+|++.|++++|+++|++|.+.| ++.+|++.|+.+.++++|..+.+.|+.||..+
T Consensus 182 ~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 182 DEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred hcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 66666666666666666666666666666666666555 56666666666666666666666666666666
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK- 211 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~- 211 (523)
||+||++|+++|++++|.++|++ |. .+|+++||+||.+|++.|+.++|.++|++|.
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~-------------------m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDG-------------------MP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-------------------CC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66666666666666666666666 32 3466666666666666666666666666663
Q ss_pred ---CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHH
Q 035847 212 ---QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288 (523)
Q Consensus 212 ---~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~ 288 (523)
.||.+||+++|. +|++.|++++|.+++.+|.+.|+.||..+|++||++|++.|++++|.++|+.|
T Consensus 319 ~g~~pd~~t~~~ll~------------a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 319 SGVSIDQFTFSIMIR------------IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred cCCCCCHHHHHHHHH------------HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 356666666666 66666666666666666666666666666666666666666666666666665
Q ss_pred HHhcCCchHHHHhHHHhhh-------------------CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc
Q 035847 289 LRHHIQLSTGVGIALISIQ-------------------GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349 (523)
Q Consensus 289 ~~~g~~~~~~~~~~li~~y-------------------~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p 349 (523)
.+ +|..+||+||..| |+.||.+||+++|++|++.|++ ++|.++|+.|.+.+|+.|
T Consensus 387 ~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~--~~a~~~f~~m~~~~g~~p 460 (697)
T PLN03081 387 PR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS--EQGWEIFQSMSENHRIKP 460 (697)
T ss_pred CC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhcCCCC
Confidence 42 5566666666666 5677777777777777777777 888888888877778999
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCC----------CCCCHHHHHHHHHHHHhhCCCCCc-----------
Q 035847 350 AMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHAARHLFELEPLSSG----------- 408 (523)
Q Consensus 350 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~~~----------~~~~~~~~~~~~~~l~~~~~~~~~----------- 408 (523)
+..||++||++|++.|++++|.+++++|++.|+.. .+|+++.|+.++++++++.|.+..
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Confidence 99999999999999999999999999999999886 799999999999999999998654
Q ss_pred --------------------------------ceeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCc----------
Q 035847 409 --------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI---------- 446 (523)
Q Consensus 409 --------------------------------~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~---------- 446 (523)
.+|.|++|+..||+.+++++.+++|..+|++.||.||+
T Consensus 541 ~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~ 620 (697)
T PLN03081 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDED 620 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHH
Confidence 56999999999999999999999999999999999997
Q ss_pred ----hhhhhhHHHHHHHccccCCCCCcEEEEecccccCCCchhhHhHhhhccccCCceEEEeeCCcccccccccccCCCC
Q 035847 447 ----PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522 (523)
Q Consensus 447 ----~~~~~~~~la~a~~l~~~~~~~~~~i~~nl~~~~d~h~~~~~~s~~~~~~~~r~i~~~d~~~~h~~~~g~csc~~~ 522 (523)
.+++||||||+||||+++|++.||||+||||+|+|||+++|+||+++ +|+|||||.+|||||+||+|||+||
T Consensus 621 ~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~----~r~i~~rd~~rfh~f~~g~csc~d~ 696 (697)
T PLN03081 621 EEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVT----KREIVVRDASRFHHFKLGKCSCGDY 696 (697)
T ss_pred HHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhc----ceEEEEecCCccccCCCCccccccc
Confidence 57899999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred C
Q 035847 523 W 523 (523)
Q Consensus 523 ~ 523 (523)
|
T Consensus 697 w 697 (697)
T PLN03081 697 W 697 (697)
T ss_pred C
Confidence 9
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=552.82 Aligned_cols=489 Identities=22% Similarity=0.335 Sum_probs=442.6
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH------------------Hhc
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------------------~f~ 63 (523)
.+++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.|.++|..+.+.|..++..+. +|+
T Consensus 66 ~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~ 145 (857)
T PLN03077 66 QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFG 145 (857)
T ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999988776554 999
Q ss_pred CCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeH
Q 035847 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVK 133 (523)
Q Consensus 64 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 133 (523)
.|++||+++||+||.+|++.|++++|+++|++|...| ++++|+..++++.+.++|..|.+.|+.||..+|
T Consensus 146 ~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225 (857)
T ss_pred cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence 9999999999999999999999999999999999887 899999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhc------------------------------------------------cccccCchh
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEK------------------------------------------------DFSNLSLLK 165 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~------------------------------------------------~~~~~~~~~ 165 (523)
|+||++|+++|++++|.++|+++ +|+..+.++
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 99999999999999999999873 788889999
Q ss_pred hHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchH
Q 035847 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245 (523)
Q Consensus 166 ~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~ 245 (523)
.|+++|..+.+. |+.||..+||+||++|+++|++++|.++|++|.+||+++||+||. +|++.|++++
T Consensus 306 ~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~------------~~~~~g~~~~ 372 (857)
T PLN03077 306 LGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS------------GYEKNGLPDK 372 (857)
T ss_pred HHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH------------HHHhCCCHHH
Confidence 999999998888 999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh--------------CC-C
Q 035847 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ--------------GL-G 310 (523)
Q Consensus 246 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y--------------~~-~ 310 (523)
|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++|+.+.+.|+.|+..+||+||++| .+ .
T Consensus 373 A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 66 7
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC---CCCCCCC---
Q 035847 311 TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM---PFEPSSA--- 384 (523)
Q Consensus 311 p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~--- 384 (523)
||+++||+||.+|++.|+. ++|..+|++|.. ++.||..||++++.+|++.|.++++.+++..| ++.|+..
T Consensus 453 ~d~vs~~~mi~~~~~~g~~--~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRC--FEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred CCeeeHHHHHHHHHHCCCH--HHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 9999999999999999999 999999999975 79999999999999999999999999998775 5666665
Q ss_pred -------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCc-------hhhh
Q 035847 385 -------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI-------PACG 450 (523)
Q Consensus 385 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~-------~~~~ 450 (523)
++|+++.|...++.+ +.|..+|+++|.|++.+|+.+++. ++|++|++.|+.||. ..|.
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAV----ELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 789999887665553 678889999999999999999985 899999999999998 4578
Q ss_pred hhHHHHHHHccccCCC-CCcE--------EEEecccccCCCchhhHhHhhhccccCCce---EEEeeCCccccccccc
Q 035847 451 HSEKLALAFGLISTSP-GSPL--------RVIKNLRMCGDCHSPTKYVSKAEKRERERE---IIMIDNYRFHHFVDGA 516 (523)
Q Consensus 451 ~~~~la~a~~l~~~~~-~~~~--------~i~~nl~~~~d~h~~~~~~s~~~~~~~~r~---i~~~d~~~~h~~~~g~ 516 (523)
|+++++.|..++..+. ..++ .+++-+..+|+...|.+++.++. .+|+.. .++..++.+.+.+.|+
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHH
Confidence 8999988887776654 2221 45567889999999999999997 666654 2445555555554443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-56 Score=488.16 Aligned_cols=372 Identities=15% Similarity=0.217 Sum_probs=305.7
Q ss_pred CCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc
Q 035847 20 ECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE 99 (523)
Q Consensus 20 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 99 (523)
||..||+.+|++|++.|+++.|.++|+.|.+.|+ .||.++||+||.+|++.|++++|.++|++|.+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl-------------~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~ 501 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL-------------KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA 501 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence 6777778888888888888888888888887777 677888888888888888888888888888876
Q ss_pred c----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhh
Q 035847 100 G----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169 (523)
Q Consensus 100 g----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~ 169 (523)
| +|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.|++++|.++|++
T Consensus 502 Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~e-------------- 567 (1060)
T PLN03218 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE-------------- 567 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH--------------
Confidence 6 7888888888888888888888888888888888888888888888888888887
Q ss_pred Hhhhhhhc--CCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CChhhHHHHHHhhhhcCCccccchhhccCCc
Q 035847 170 IHPHHLKK--DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ----KHLVSWNAMLAGYALGGFREEITGFTQYGDG 243 (523)
Q Consensus 170 ~~~~~~~~--~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~----~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~ 243 (523)
|+. .|+.||..+|++||++|+++|++++|.++|+.|.+ |+..+||++|. +|++.|++
T Consensus 568 -----M~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~------------ay~k~G~~ 630 (1060)
T PLN03218 568 -----MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN------------SCSQKGDW 630 (1060)
T ss_pred -----HHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH------------HHHhcCCH
Confidence 643 47899999999999999999999999999999974 67799999999 99999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh----------------
Q 035847 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ---------------- 307 (523)
Q Consensus 244 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y---------------- 307 (523)
++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+.|+.||..+|++||++|
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC---CCCC
Q 035847 308 ---GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM---PFEP 381 (523)
Q Consensus 308 ---~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m---~~~p 381 (523)
++.||+++||+||.+|++.|++ ++|.++|++|.+. |+.||..||++||.+|++.|++++|.+++++| ++.|
T Consensus 711 ~~~g~~PdvvtyN~LI~gy~k~G~~--eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 711 KSIKLRPTVSTMNALITALCEGNQL--PKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 5689999999999999999999 9999999999987 99999999999999999999999999999998 5778
Q ss_pred CCCCCCCHH-HHHHHHHHHHhhCCCCCcceeEEEecC--CCCchHHHHHHHHHHHHHHHHHcCCcCCc
Q 035847 382 SSAEPCNPD-IAEHAARHLFELEPLSSGKVHSFIAGD--TSHSLVHKISEKLMRLYSEIKKIGYMKRI 446 (523)
Q Consensus 382 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 446 (523)
|...+..+- ......++..++.. ....|+ .|. ......+++ ..+|++|++.|+.||.
T Consensus 788 d~~tynsLIglc~~~y~ka~~l~~-~v~~f~---~g~~~~~n~w~~~A----l~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 788 NLVMCRCITGLCLRRFEKACALGE-PVVSFD---SGRPQIENKWTSWA----LMVYRETISAGTLPTM 847 (1060)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhh-hhhhhh---ccccccccchHHHH----HHHHHHHHHCCCCCCH
Confidence 776222221 11111111111100 000111 111 111233444 4899999999999997
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-55 Score=478.66 Aligned_cols=392 Identities=15% Similarity=0.224 Sum_probs=352.3
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
.+++|+++|++|.+.|+.||..+|++||.+|++.|+++.|.+++++|.+.|+ .||+++||+||.+|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv-------------~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV-------------EANVHTFGALIDGCA 518 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred hcCCchHHHHHHHHhhHcc----------HHHHhhccCChHHHHHHHHHHHH--hcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 82 VLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMIS--IKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g----------ll~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
+.|++++|+++|++|...| +|.+|++.|++++|.++|++|.+ .|+.||..+|++||++|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999887 99999999999999999999986 67999999999999999999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHhh
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK----QKHLVSWNAMLAGY 225 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~----~~~~~t~~~li~~~ 225 (523)
.++|++ |...|+.|+..+||++|.+|++.|++++|.++|++|. .||.++|++||.
T Consensus 599 ~elf~~-------------------M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~-- 657 (1060)
T PLN03218 599 KEVYQM-------------------IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD-- 657 (1060)
T ss_pred HHHHHH-------------------HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--
Confidence 999999 7777999999999999999999999999999999997 489999999999
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
+|++.|++++|.++|++|.+.|++||..||++||.+|++.|++++|.++|+.|.+.|+.||..+||+||+
T Consensus 658 ----------a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~ 727 (1060)
T PLN03218 658 ----------VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727 (1060)
T ss_pred ----------HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-------------------CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh---
Q 035847 306 IQ-------------------GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR--- 363 (523)
Q Consensus 306 ~y-------------------~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~--- 363 (523)
.| |+.||..||+++|.+|++.|++ ++|.++|+.|.+. |+.||..+|++|+..|.+
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l--e~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ 804 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA--DVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFE 804 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHH
Confidence 99 6789999999999999999999 9999999999988 999999999999976542
Q ss_pred -h-------------------CCHHHHHHHHHhC---CCCCCCC----------CCCCHHHHHHHHHHHH-hhCCCCCcc
Q 035847 364 -A-------------------GQFDDTLNFMKKM---PFEPSSA----------EPCNPDIAEHAARHLF-ELEPLSSGK 409 (523)
Q Consensus 364 -~-------------------g~~~~A~~~~~~m---~~~p~~~----------~~~~~~~~~~~~~~l~-~~~~~~~~~ 409 (523)
+ +..++|..+|++| ++.||.. +.+..+.+....+.+. .-.+.+..+
T Consensus 805 ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~ 884 (1060)
T PLN03218 805 KACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSN 884 (1060)
T ss_pred HHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhh
Confidence 2 2346799999998 5888876 3444444443333221 112345568
Q ss_pred eeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCc
Q 035847 410 VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446 (523)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 446 (523)
++++|.|+... .++|+ .++++|...|+.|+.
T Consensus 885 y~~Li~g~~~~--~~~A~----~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 885 LSTLVDGFGEY--DPRAF----SLLEEAASLGVVPSV 915 (1060)
T ss_pred hHHHHHhhccC--hHHHH----HHHHHHHHcCCCCCc
Confidence 88889887544 24554 789999999999997
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=451.81 Aligned_cols=354 Identities=21% Similarity=0.320 Sum_probs=315.7
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCc-chHH-------------HHhcCC---
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-CAFL-------------GMFEKM--- 65 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~-------------~~f~~~--- 65 (523)
++.|..++..|.+.|+.||..+|+.|++.|++.|+++.|.++|++|.+..... +..+ .+|++|
T Consensus 139 ~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 139 IRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 34566777777777777777777777777777777777777777665422110 0000 045544
Q ss_pred -CCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHh
Q 035847 66 -PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKR 134 (523)
Q Consensus 66 -~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 134 (523)
..||..+|+.+|.+|++.|..+.+.+++..|.+.| ++.+|++.|++++|.++|+.|. .+|+.+||
T Consensus 219 g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n 294 (697)
T PLN03081 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWN 294 (697)
T ss_pred CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHH
Confidence 37999999999999999999999999999999887 9999999999999999999995 67999999
Q ss_pred HHHHHHHhcCCHHHHHHHhhhc-----------------cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhc
Q 035847 135 PVLDMFIKCGRMEMASGEFEEK-----------------DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197 (523)
Q Consensus 135 ~li~~~~~~g~~~~A~~~f~~~-----------------~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~ 197 (523)
+||.+|++.|++++|.++|++| +|+..+.++.|+++|..+.+. |+.||..+||+||++|+|+
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHC
Confidence 9999999999999999999985 899999999999999999988 9999999999999999999
Q ss_pred CChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 035847 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277 (523)
Q Consensus 198 g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~ 277 (523)
|++++|.++|++|.+||++|||+||. +|+++|+.++|+++|++|.+.|+.||..||+++|.+|++.|.
T Consensus 374 G~~~~A~~vf~~m~~~d~~t~n~lI~------------~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 374 GRMEDARNVFDRMPRKNLISWNALIA------------GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHH------------HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH-hcCCchHHHHhHHHhhh----------------CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHH
Q 035847 278 FKLGKEIHGYVLR-HHIQLSTGVGIALISIQ----------------GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340 (523)
Q Consensus 278 ~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y----------------~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~ 340 (523)
+++|.++|+.|.+ .|+.|+..+|+++|+.| ++.||..+|++||.+|+.+|+. +.|..+++.
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~--~~a~~~~~~ 519 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL--ELGRLAAEK 519 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc--HHHHHHHHH
Confidence 9999999999986 69999999999999999 4489999999999999999999 999999998
Q ss_pred hHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 341 MKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 341 m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
+. ++.|+ ..+|+.|+++|++.|++++|.+++++|.
T Consensus 520 l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 520 LY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred Hh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 85 56776 6899999999999999999999999984
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-25 Score=179.92 Aligned_cols=86 Identities=58% Similarity=0.980 Sum_probs=75.8
Q ss_pred eeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCc----------------------hhhhhhHHHHHHHccccCCCC
Q 035847 410 VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI----------------------PACGHSEKLALAFGLISTSPG 467 (523)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~----------------------~~~~~~~~la~a~~l~~~~~~ 467 (523)
.|.|++|+.+||+.. +..+|...||.|+. .++.||||||+||||+++
T Consensus 8 ~h~F~sgd~shp~~~--------~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~--- 76 (116)
T PF14432_consen 8 VHSFVSGDRSHPQSE--------LINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT--- 76 (116)
T ss_pred eEEEEeCCCcCccHH--------HHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce---
Confidence 489999999999983 34555666666655 347899999999999998
Q ss_pred CcEEEEecc-cccCCCchhhHhHhhhccccCCceEEEeeCCcccccc
Q 035847 468 SPLRVIKNL-RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFV 513 (523)
Q Consensus 468 ~~~~i~~nl-~~~~d~h~~~~~~s~~~~~~~~r~i~~~d~~~~h~~~ 513 (523)
+|+||+ |||+|||+++|+||+++ +|+|||||++|||||+
T Consensus 77 ---~vvkn~~RvC~DCH~~~K~iS~~~----~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 77 ---RVVKNLKRVCGDCHSFIKFISKIT----GREIIVRDSNRFHHFK 116 (116)
T ss_pred ---eEEecCCccchHHHHHHHHHHHHH----CeEEEEeCCCeeeeCC
Confidence 899999 99999999999999999 9999999999999996
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-18 Score=193.29 Aligned_cols=419 Identities=12% Similarity=0.038 Sum_probs=268.1
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|+..|......... +......++..+.+.|+++.|..+++.+.... .++..+|+.+...|.+
T Consensus 413 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~ 477 (899)
T TIGR02917 413 PSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ--------------PDNASLHNLLGAIYLG 477 (899)
T ss_pred hHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------------CCCcHHHHHHHHHHHh
Confidence 45677777766654322 22334445566667777777777777666542 2345566666666666
Q ss_pred cCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHh
Q 035847 83 LGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 153 (523)
.|++++|...|+++.+.. +...+...|++++|.+.++.+.+.. +.+..++..+...|.+.|+.++|..+|
T Consensus 478 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666655432 4445555666666666666666543 334556666666666666666666666
Q ss_pred hhc----------------cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CC
Q 035847 154 EEK----------------DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KH 214 (523)
Q Consensus 154 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~ 214 (523)
+++ .+...+..+.+..++..+.+. ...+..+|..+...|.+.|++++|...|+.+.+ .+
T Consensus 557 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 634 (899)
T TIGR02917 557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634 (899)
T ss_pred HHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 653 222345555555555554433 344566778888888888888888888877643 24
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
...|..+.. .|.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|.++++.+.+...
T Consensus 635 ~~~~~~l~~------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 700 (899)
T TIGR02917 635 ALALLLLAD------------AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP- 700 (899)
T ss_pred hHHHHHHHH------------HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-
Confidence 456777777 6777777777777777776532 22456677777777777777777777777766542
Q ss_pred chHHHHhHHHhhh-----------------CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHH
Q 035847 295 LSTGVGIALISIQ-----------------GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357 (523)
Q Consensus 295 ~~~~~~~~li~~y-----------------~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~l 357 (523)
.+...+..+...| ...|+..++..+...|.+.|+. ++|.+.++.+.+. ...+...+..+
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~l~~--~~~~~~~~~~l 776 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT--AEAVKTLEAWLKT--HPNDAVLRTAL 776 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH--HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 2333344333333 3356667788888888899998 8899888888764 34557788888
Q ss_pred HHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHH
Q 035847 358 VDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHK 425 (523)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (523)
...|.+.|++++|.+.++++ ...|+.. ..++ ..|...+++.++..|.++..+..+...+...|+.++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 88888899999999888885 3445544 4555 568888888888888887766666555667788888
Q ss_pred HHHHHHHHHHHHHHcCCc-CCc-----hhhhhhHHHHHHHccc
Q 035847 426 ISEKLMRLYSEIKKIGYM-KRI-----PACGHSEKLALAFGLI 462 (523)
Q Consensus 426 ~~~~l~~l~~~m~~~g~~-pd~-----~~~~~~~~la~a~~l~ 462 (523)
+. +.++++.+.+-. |+. ......|+...|..++
T Consensus 856 A~----~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 856 AL----PLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred HH----HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 75 455566554432 222 2234455555554443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.3e-18 Score=188.24 Aligned_cols=448 Identities=12% Similarity=0.043 Sum_probs=342.9
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
.+++|..+|+++.+.. +.+...+..+...+...|+++.|...+..+.+... .+...+..++..|.
T Consensus 378 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 378 DFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP--------------ELGRADLLLILSYL 442 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC--------------cchhhHHHHHHHHH
Confidence 4678999999987653 22455677777888899999999999999887542 23456777889999
Q ss_pred hcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 82 VLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
+.|++++|+++++.+.... +...+...|+.+.|.+.+..+.+.. +.+...+..+...+.+.|++++|...
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999987653 6777888999999999999998764 34566788899999999999999999
Q ss_pred hhhc----------------cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---C
Q 035847 153 FEEK----------------DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---K 213 (523)
Q Consensus 153 f~~~----------------~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~ 213 (523)
|+++ .....+..+.+...+..+.+. ...+...+..+...|.+.|+.++|..+++.+.+ .
T Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 9884 233456778888888887665 234567888899999999999999999998863 4
Q ss_pred ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
+..+|..+.. .|.+.|++++|...|+.+.+.. +.+...+..+..++.+.|+.++|..++..+.+..
T Consensus 600 ~~~~~~~l~~------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 600 SPEAWLMLGR------------AQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred CHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 6678999999 8899999999999999998753 2356778888899999999999999999988753
Q ss_pred CchHHHHhHHHhhh-----------------CC-CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHH
Q 035847 294 QLSTGVGIALISIQ-----------------GL-GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYC 355 (523)
Q Consensus 294 ~~~~~~~~~li~~y-----------------~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~ 355 (523)
+.+...+..+...+ .. .++...|..+...|...|+. ++|...|+.+... .|+..++.
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~~~~~~~~~---~~~~~~~~ 740 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY--PAAIQAYRKALKR---APSSQNAI 740 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH--HHHHHHHHHHHhh---CCCchHHH
Confidence 33455666666555 22 45667888899999999999 9999999999865 57778888
Q ss_pred HHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchH
Q 035847 356 CMVDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLV 423 (523)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 423 (523)
.+..++.+.|++++|.+.++++ ...|+.. ..|+.+.|....+++++..|+++..++.+...+...+.
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-
Confidence 8999999999999999998885 3455554 58999999999999999999988777766666666666
Q ss_pred HHHHHHHHHHHHHHHHcCCcCCc--------hhhhhhHHHHHHHccc----cCCCCCcE---EEEecccccCCCchhhHh
Q 035847 424 HKISEKLMRLYSEIKKIGYMKRI--------PACGHSEKLALAFGLI----STSPGSPL---RVIKNLRMCGDCHSPTKY 488 (523)
Q Consensus 424 ~~~~~~l~~l~~~m~~~g~~pd~--------~~~~~~~~la~a~~l~----~~~~~~~~---~i~~nl~~~~d~h~~~~~ 488 (523)
.++...+++.+. ..|+. .+..+.++.+.|...+ ...|..+. .+..-+...|+-..|+++
T Consensus 820 ~~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 820 PRALEYAEKALK------LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHHHHHHHHHHh------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 666544444333 23544 2344455555555444 22222221 112234455888888888
Q ss_pred Hhhhc
Q 035847 489 VSKAE 493 (523)
Q Consensus 489 ~s~~~ 493 (523)
+.++.
T Consensus 894 ~~~~~ 898 (899)
T TIGR02917 894 LDKLL 898 (899)
T ss_pred HHHHh
Confidence 88775
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-16 Score=160.12 Aligned_cols=277 Identities=11% Similarity=0.073 Sum_probs=218.4
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-----------
Q 035847 32 CPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------- 100 (523)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------- 100 (523)
+...|+++.|...+..+.+.. ..+..+|..+...|.+.|++++|+.+++.+...+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD--------------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC--------------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 346788999999999988764 2356788899999999999999999998887643
Q ss_pred --HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 101 --VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 101 --ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
+...+...|+++.|..+|..+.+.. .++..+++.++..|.+.|++++|...|++ +...
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~-------------------~~~~ 170 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAER-------------------LEKL 170 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHH-------------------HHHh
Confidence 4666778889999999998888652 45677889999999999999999999988 3331
Q ss_pred CCCCc----hhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHH
Q 035847 179 DLESD----LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251 (523)
Q Consensus 179 g~~~d----~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~ 251 (523)
+..++ ...+..+...+.+.|+.++|...|+++.+ | +..++..+.. .|.+.|++++|.++|+
T Consensus 171 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~------------~~~~~g~~~~A~~~~~ 238 (389)
T PRK11788 171 GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGD------------LALAQGDYAAAIEALE 238 (389)
T ss_pred cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHH------------HHHHCCCHHHHHHHHH
Confidence 22221 22456677788899999999999988753 3 3456777777 8889999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCch
Q 035847 252 RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331 (523)
Q Consensus 252 ~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~ 331 (523)
++...+..+...+++.+..++...|+.++|.+.++.+.+. .|+...++.+...+.+.|+.
T Consensus 239 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~------------------~p~~~~~~~la~~~~~~g~~-- 298 (389)
T PRK11788 239 RVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE------------------YPGADLLLALAQLLEEQEGP-- 298 (389)
T ss_pred HHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCchHHHHHHHHHHHhCCH--
Confidence 9987543333467888889999999999999998888764 34555668888999999999
Q ss_pred HHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh---hCCHHHHHHHHHhC
Q 035847 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR---AGQFDDTLNFMKKM 377 (523)
Q Consensus 332 ~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~---~g~~~~A~~~~~~m 377 (523)
++|..+|+.+.+. .|+..++..++..+.. .|+.+++..++++|
T Consensus 299 ~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 299 EAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 9999999988754 6898899988887765 55888999888887
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=162.55 Aligned_cols=285 Identities=14% Similarity=0.129 Sum_probs=232.2
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ..+...|..+...|.
T Consensus 50 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----------~~~~~~~~~La~~~~ 118 (389)
T PRK11788 50 QPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR----------EQRLLALQELGQDYL 118 (389)
T ss_pred ChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH----------HHHHHHHHHHHHHHH
Confidence 3678999999999863 22445788888999999999999999999887532100 012357899999999
Q ss_pred hcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCc----eeHhHHHHHHHhcCCHHH
Q 035847 82 VLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNA----CVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~ 148 (523)
+.|++++|+.+|+++.+.. +...+...|++++|.+.+..+.+.+-.++. ..+..+...+.+.|++++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999998643 778889999999999999999887533221 245667788899999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC--hhhHHHHHHh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH--LVSWNAMLAG 224 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~--~~t~~~li~~ 224 (523)
|...|++ ... ....+...+..+...|.+.|+.++|.++|+++.+ |+ ..+++.+..
T Consensus 199 A~~~~~~-------------------al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~- 257 (389)
T PRK11788 199 ARALLKK-------------------ALA-ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLME- 257 (389)
T ss_pred HHHHHHH-------------------HHh-HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHH-
Confidence 9999999 333 1223466788899999999999999999999874 44 346888889
Q ss_pred hhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHH
Q 035847 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304 (523)
Q Consensus 225 ~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li 304 (523)
.|.+.|++++|...|+++.+. .|+...+..+...+.+.|+.++|..+++.+.+.
T Consensus 258 -----------~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~------------- 311 (389)
T PRK11788 258 -----------CYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR------------- 311 (389)
T ss_pred -----------HHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------------
Confidence 899999999999999999885 577777788999999999999999999988774
Q ss_pred hhhCCCCCcchHHHHHHHHHh---cCCCchHHHHHHHHHhHHhcCCccCHh
Q 035847 305 SIQGLGTGSFVWNSLIDMYGR---CGAIQKNEGWRYFEMMKKEYNMEPAME 352 (523)
Q Consensus 305 ~~y~~~p~~~~~n~li~~~~~---~g~~~~~~a~~~~~~m~~~~g~~p~~~ 352 (523)
.|+..+++.++..+.. .|+. +++..+|+.|.++ ++.|+..
T Consensus 312 -----~P~~~~~~~l~~~~~~~~~~g~~--~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 312 -----HPSLRGFHRLLDYHLAEAEEGRA--KESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred -----CcCHHHHHHHHHHhhhccCCccc--hhHHHHHHHHHHH-HHhCCCC
Confidence 4677888988888775 5688 9999999999987 8888876
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-12 Score=124.46 Aligned_cols=355 Identities=14% Similarity=0.143 Sum_probs=230.9
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhcc--CCCChHHH-HHHHHHHHHhCCCcc-------hHHHHhcCCCCCCcch
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCP--KLNNLELG-IQVHAHLIVCGVELC-------AFLGMFEKMPERNVFS 72 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~-------~~~~~f~~~~~~~~~~ 72 (523)
++++.-+|+.|+..|+..+...--.|++.-+ .+.+..-+ ++-|-.|.+.|-.+. ..-.+|+..| ++-.|
T Consensus 131 vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P-KT~et 209 (625)
T KOG4422|consen 131 VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP-KTDET 209 (625)
T ss_pred cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC-CCchh
Confidence 4677888999999888777766555555433 23332222 234445555443221 1111666665 46689
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHcc------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEG------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~g------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
|.+||.|+|+-...+.|.+++++-.... ...+......+..++.+..+|+...+.||..|+|++++..++.|++
T Consensus 210 ~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F 289 (625)
T KOG4422|consen 210 VSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKF 289 (625)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcch
Confidence 9999999999999999999998876543 3333333344455599999999999999999999999999999999
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHH-HHHHHhcCC--------C---C-
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV-AHCKFSKIK--------Q---K- 213 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~-A~~vf~~m~--------~---~- 213 (523)
+.|.+.+-+ +... ||.-|++|...+|..+|.-+++.++..+ |..+..++. + |
T Consensus 290 ~~ar~aalq--------------il~E-mKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 290 EDARKAALQ--------------ILGE-MKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred HHHHHHHHH--------------HHHH-HHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 988776655 3444 5656999999999999999998888644 333333322 1 1
Q ss_pred ChhhHHHHHH---------------hhhhcCCccc---------------cchhhccCCchHHHHHHHHHHhcCCCCCHH
Q 035847 214 HLVSWNAMLA---------------GYALGGFREE---------------ITGFTQYGDGETALEFFSRMIQTDMQPNTI 263 (523)
Q Consensus 214 ~~~t~~~li~---------------~~~~~g~~~~---------------i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 263 (523)
|..-+-+-+. ++.+.|.-.. ....|+....+.-+..|+.|.-+-.-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 1111111111 1222222211 346667777888888999998888889999
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh-CC--CCCcchHHHHHHHHHhcC-CCchHHHHHHHH
Q 035847 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ-GL--GTGSFVWNSLIDMYGRCG-AIQKNEGWRYFE 339 (523)
Q Consensus 264 t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y-~~--~p~~~~~n~li~~~~~~g-~~~~~~a~~~~~ 339 (523)
+...++.|..-.+.++...+++..++..|........--++..+ +. .|+...-..+=..+++.- ++ .+....--.
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~-~e~~e~~~~ 513 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADI-KEAYESQPI 513 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH-HHHHHhhHH
Confidence 99999999999999999999999999988665554444333333 22 344332222222222221 11 012222234
Q ss_pred HhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 340 ~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+|++. .......++..-.+.|.|+.++|.+++.-.
T Consensus 514 R~r~~---~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 514 RQRAQ---DWPATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred HHHhc---cCChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 45543 344456677777788888888888886654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-11 Score=129.13 Aligned_cols=328 Identities=10% Similarity=-0.047 Sum_probs=218.5
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|+.+++........+.. .+..+..++...|+++.|...++.+.... ..+...|..+-..+.+
T Consensus 58 ~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--------------P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 58 TDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVN--------------VCQPEDVLLVASVLLK 122 (656)
T ss_pred cchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhC--------------CCChHHHHHHHHHHHH
Confidence 45666666666655333322 23333344445777777777777777653 1245567777777777
Q ss_pred cCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHh
Q 035847 83 LGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 153 (523)
.|++++|+..|++..... +...+...|+.++|...+..+....- .+...+..+ ..+.+.|++++|..++
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 777888877777776532 55566777777777777776655431 122223222 3466777777777777
Q ss_pred hhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCC
Q 035847 154 EEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGF 230 (523)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~ 230 (523)
+. +......++...+..+...+.+.|+.++|...|+...+ | +...++.+-.
T Consensus 201 ~~-------------------~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~------- 254 (656)
T PRK15174 201 RA-------------------LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGL------- 254 (656)
T ss_pred HH-------------------HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-------
Confidence 76 32212223344555566788888999999988887653 3 4456777777
Q ss_pred ccccchhhccCCchH----HHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 231 REEITGFTQYGDGET----ALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 231 ~~~i~~~~~~g~~~~----A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
.|.+.|++++ |+..|++..+. .| +...+..+...+...|+.++|...++...+.. |
T Consensus 255 -----~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P---------- 315 (656)
T PRK15174 255 -----AYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--P---------- 315 (656)
T ss_pred -----HHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C----------
Confidence 7778888875 78888888764 45 45677788888888999999999988887642 2
Q ss_pred hhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhH-HHHHHHHHHhhCCHHHHHHHHHhC-CCCCCC
Q 035847 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ-YCCMVDLLARAGQFDDTLNFMKKM-PFEPSS 383 (523)
Q Consensus 306 ~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~t-y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 383 (523)
.+...+..+...|.+.|+. ++|...|+.+... .|+... +..+..++...|+.++|...+++. ...|+.
T Consensus 316 -----~~~~a~~~La~~l~~~G~~--~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 316 -----DLPYVRAMYARALRQVGQY--TAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred -----CCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 1334667788899999999 9999999988764 566433 344566788999999999999884 455655
Q ss_pred CCCCCHHHHHHHHHHHHhhC
Q 035847 384 AEPCNPDIAEHAARHLFELE 403 (523)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~ 403 (523)
. ..+.+.+.......++..
T Consensus 386 ~-~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 386 L-PQSFEEGLLALDGQISAV 404 (656)
T ss_pred c-hhhHHHHHHHHHHHHHhc
Confidence 4 344555555555555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-11 Score=129.35 Aligned_cols=315 Identities=10% Similarity=-0.007 Sum_probs=243.1
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG- 100 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 100 (523)
....-.++..+.+.|+++.|..++........ . +...+..+..+....|++++|+..|+++....
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-------------~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P 107 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAK-------------N-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV 107 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-------------C-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC
Confidence 34455566777788999999999888887643 2 34455566677778999999999999998764
Q ss_pred --------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhh
Q 035847 101 --------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172 (523)
Q Consensus 101 --------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~ 172 (523)
+...+...|+.+.|.+.++...+.. +.+..++..+...|...|++++|...++.
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~----------------- 169 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLART----------------- 169 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHH-----------------
Confidence 6667788999999999999998762 33567888899999999999999999987
Q ss_pred hhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC----ChhhHHHHHHhhhhcCCccccchhhccCCchHHHH
Q 035847 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK----HLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248 (523)
Q Consensus 173 ~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~----~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~ 248 (523)
+...... +...+..+ ..+.+.|++++|..+++.+.+. +...+..+.. .+.+.|++++|+.
T Consensus 170 --~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~------------~l~~~g~~~eA~~ 233 (656)
T PRK15174 170 --QAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVD------------TLCAVGKYQEAIQ 233 (656)
T ss_pred --HHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHH------------HHHHCCCHHHHHH
Confidence 4321222 22333333 3478899999999999987542 2334444556 7788999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhccCChhH----HHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHH
Q 035847 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKL----GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYG 324 (523)
Q Consensus 249 lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~ 324 (523)
.|++..+.. .-+...+..+-..+...|+.++ |...++...+. .| .+...+..+...+.
T Consensus 234 ~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P---------------~~~~a~~~lg~~l~ 295 (656)
T PRK15174 234 TGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NS---------------DNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CC---------------CCHHHHHHHHHHHH
Confidence 999998753 2245667778888899999886 78888887763 22 24568889999999
Q ss_pred hcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC-CCCCCC-----------CCCCHHH
Q 035847 325 RCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP-FEPSSA-----------EPCNPDI 391 (523)
Q Consensus 325 ~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~-----------~~~~~~~ 391 (523)
..|+. ++|..++++..+. .|+ ...+..+..++.+.|++++|.+.++++. ..|+.. ..|+.+.
T Consensus 296 ~~g~~--~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 296 RTGQN--EKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HCCCH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 99999 9999999998864 455 4567778889999999999999998863 566653 6789999
Q ss_pred HHHHHHHHHhhCCCCC
Q 035847 392 AEHAARHLFELEPLSS 407 (523)
Q Consensus 392 ~~~~~~~l~~~~~~~~ 407 (523)
|...+++.++..|++.
T Consensus 371 A~~~l~~al~~~P~~~ 386 (656)
T PRK15174 371 AESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHhChhhc
Confidence 9999999999999865
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.5e-11 Score=135.62 Aligned_cols=384 Identities=10% Similarity=0.053 Sum_probs=262.3
Q ss_pred hhHHHHHHHHhhhCCCCC-CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHH-----
Q 035847 3 IKNVTLLLQSMDLTNPDE-CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSM----- 76 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~l----- 76 (523)
+++|+..|++..+. .| |...+..+-.++.+.|++++|...++...+.... .++...|..+
T Consensus 285 ~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~------------~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 285 GGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH------------SSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------ccchhHHHHHHHhhh
Confidence 57788888877764 34 5567777778888888888888888887765321 1122223322
Q ss_pred -------HHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHH
Q 035847 77 -------MGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140 (523)
Q Consensus 77 -------i~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (523)
-..+.+.|++++|+..|++..... +-..+...|+.++|.+.|+..++.. +.+...+..+...|
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 235678899999999999887654 5667788999999999999998763 23455666677766
Q ss_pred HhcCCHHHHHHHhhhc-------------------------cccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHH
Q 035847 141 IKCGRMEMASGEFEEK-------------------------DFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFY 194 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~ 194 (523)
. .++.++|..+++.. .....+..++|.+.+...++. .| +..++..+...|
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDL 505 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 4 45778888777642 112356777788877777765 34 456777888889
Q ss_pred HhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHH--------
Q 035847 195 AKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI-------- 263 (523)
Q Consensus 195 ~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~-------- 263 (523)
.+.|+.++|...|+...+ | +...+..+.. .+.+.|+.++|+..++.+......++..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al------------~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGL------------YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH------------HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 999999999999987642 4 3334444434 5567888899998888765433222221
Q ss_pred -HHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhH
Q 035847 264 -SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342 (523)
Q Consensus 264 -t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~ 342 (523)
.+..+...+...|+.++|.++++. . +++...+..+-..|.+.|+. ++|+..|+...
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~------~---------------p~~~~~~~~La~~~~~~g~~--~~A~~~y~~al 630 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQ------Q---------------PPSTRIDLTLADWAQQRGDY--AAARAAYQRVL 630 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh------C---------------CCCchHHHHHHHHHHHcCCH--HHHHHHHHHHH
Confidence 123345567778888888887661 1 12444566778888899999 99999998887
Q ss_pred HhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC-CCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcc
Q 035847 343 KEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP-FEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGK 409 (523)
Q Consensus 343 ~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~ 409 (523)
+. .|+ ...+..+...|...|++++|.+.++... ..|+.. ..|+.+.|....+++++..|+++..
T Consensus 631 ~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 707 (1157)
T PRK11447 631 TR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPS 707 (1157)
T ss_pred Hh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcc
Confidence 64 444 6788888889999999999999988753 455554 6788888888888888877665431
Q ss_pred e------eEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCc
Q 035847 410 V------HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446 (523)
Q Consensus 410 ~------~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 446 (523)
. .....-+...|+.+++...++ .-|...|+.|+.
T Consensus 708 ~~~a~~~~~~a~~~~~~G~~~~A~~~y~---~Al~~~~~~~~~ 747 (1157)
T PRK11447 708 MESALVLRDAARFEAQTGQPQQALETYK---DAMVASGITPTR 747 (1157)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHH---HHHhhcCCCCCC
Confidence 1 111122345677777754433 334556777655
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-10 Score=123.41 Aligned_cols=369 Identities=8% Similarity=-0.000 Sum_probs=261.1
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
.++|+.++...... -+.+...+..+..++.+.|++++|..++....+.. ..+...+..+...+.+
T Consensus 31 ~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--------------P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 31 DAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--------------PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHH
Confidence 56888888887652 13344568888888889999999999999987753 2346677888889999
Q ss_pred cCCchHHHHHHHHhhHcc--------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhh
Q 035847 83 LGYYEEIVNLFYLLIDEG--------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g--------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~ 154 (523)
.|++++|+..+++..... +..++...|+.+.|...++.+.+.. +.+..++..+...+.+.|..+.|+..++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 999999999999886644 4556678899999999999999873 3345566678888888999999998888
Q ss_pred hccc-------------------------cccCch---hhHhhHhhhhhhcCCCCCchh-HH----HHHHHHHHhcCChH
Q 035847 155 EKDF-------------------------SNLSLL---KHGKEIHPHHLKKDDLESDLL-VN----NSLMDFYAKCRYLK 201 (523)
Q Consensus 155 ~~~~-------------------------~~~~~~---~~~~~~~~~~~~~~g~~~d~~-~~----~~li~~~~k~g~~~ 201 (523)
.+.. ...+.+ +.+.+.+..+.+.....|+.. .+ ...+.++...|+.+
T Consensus 175 ~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 175 DANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 5211 000111 344445555443312233321 11 11133456779999
Q ss_pred HHHHHHhcCCCCC--hhhH--HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC---CHHHHHHHHHHhhc
Q 035847 202 VAHCKFSKIKQKH--LVSW--NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP---NTISLSGVLAACAQ 274 (523)
Q Consensus 202 ~A~~vf~~m~~~~--~~t~--~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p---~~~t~~~ll~a~~~ 274 (523)
+|...|+.+.+.+ ...+ -.+.. .|...|++++|+..|++..+..-.. .......+..++..
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~~~la~------------~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQRWVAS------------AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHH------------HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 9999999987532 2222 11344 7788999999999999987643111 12445666668889
Q ss_pred cCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCc---chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH
Q 035847 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS---FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM 351 (523)
Q Consensus 275 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~---~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~ 351 (523)
.|+.++|.++++.+.+.. ++....+... .-.|+. ..+..+...+...|+. ++|+.+++++... ..-+.
T Consensus 323 ~g~~~eA~~~l~~~~~~~-P~~~~~~~~~----~~~p~~~~~~a~~~~a~~l~~~g~~--~eA~~~l~~al~~--~P~n~ 393 (765)
T PRK10049 323 SENYPGALTVTAHTINNS-PPFLRLYGSP----TSIPNDDWLQGQSLLSQVAKYSNDL--PQAEMRARELAYN--APGNQ 393 (765)
T ss_pred cccHHHHHHHHHHHhhcC-CceEeecCCC----CCCCCchHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh--CCCCH
Confidence 999999999999888642 1111000000 003342 2456677888999999 9999999999864 23346
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 352 EQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 352 ~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
..+..+...+...|+.++|++.+++. ...|+.. ..++.+.|+...+.+++..|+++.
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 78888999999999999999999984 5788875 778899999999999999998874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-13 Score=94.91 Aligned_cols=50 Identities=20% Similarity=0.508 Sum_probs=48.7
Q ss_pred CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 035847 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274 (523)
Q Consensus 213 ~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 274 (523)
||+++||++|. +|++.|++++|+++|++|.+.|++||..||++||++||+
T Consensus 1 P~~~~yn~li~------------~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLIS------------GYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHH------------HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999 999999999999999999999999999999999999986
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-10 Score=125.64 Aligned_cols=376 Identities=13% Similarity=0.032 Sum_probs=241.9
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|+..|.+... +.|+...|..+-.++.+.|+++.|...+...++.. ..+...|..+-.+|..
T Consensus 143 ~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--------------p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 143 FNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--------------PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--------------CCCHHHHHHHHHHHHH
Confidence 5678888887665 45677777777777888888888888888777643 2356677778888888
Q ss_pred cCCchHHHHHHHHhhHcc------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc
Q 035847 83 LGYYEEIVNLFYLLIDEG------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK 156 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~ 156 (523)
.|++++|+.-|......+ ......+ .....+.+......+.. .++...+..+ ..|......+.+..-+++.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVER-LLKKFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHH-HHHHHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhhhhcc
Confidence 888888887775543221 0000000 00011111111111110 1111111111 1111110000000000000
Q ss_pred -------------------cccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC
Q 035847 157 -------------------DFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH 214 (523)
Q Consensus 157 -------------------~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~ 214 (523)
-....+.++.+.+.+...+......| +...|+.+-..|...|++++|...|+...+ |+
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 00011223333344444454422334 456788888899999999999999998753 54
Q ss_pred -hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035847 215 -LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 215 -~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
..+|..+.. .+...|++++|+..|++..+.. +-+..+|..+-..+...|++++|...++..++..
T Consensus 364 ~~~~~~~la~------------~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~- 429 (615)
T TIGR00990 364 VTQSYIKRAS------------MNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD- 429 (615)
T ss_pred cHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 447777777 8889999999999999987753 2246788888888999999999999999988742
Q ss_pred CchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHH
Q 035847 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLN 372 (523)
Q Consensus 294 ~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~ 372 (523)
+.+...|..+...+.+.|+. ++|...|++..+. .|+ ...|+.+-..+...|++++|.+
T Consensus 430 ----------------P~~~~~~~~la~~~~~~g~~--~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 430 ----------------PDFIFSHIQLGVTQYKEGSI--ASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred ----------------ccCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 22456677888899999999 9999999998764 354 6788889999999999999999
Q ss_pred HHHh-CCCCCCCC------------------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHHH
Q 035847 373 FMKK-MPFEPSSA------------------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMR 432 (523)
Q Consensus 373 ~~~~-m~~~p~~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (523)
.+++ ....|+.. ..++++.|...+++.++++|.+...+..+...+...|+.+++...+++
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9988 44555421 147788888899999999888766555555555667778887654444
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-10 Score=131.78 Aligned_cols=342 Identities=9% Similarity=0.011 Sum_probs=232.1
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------- 100 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------- 100 (523)
.+...|++++|...++...+.. ..|...+..|-..|.+.|++++|+..|++..+..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--------------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--------------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 3456788888888888877753 2367788888888999999999999998876532
Q ss_pred -H------------HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhH
Q 035847 101 -V------------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167 (523)
Q Consensus 101 -l------------l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ 167 (523)
+ -..+.+.|++++|.+.+.++++.. +.+...+..+-..|.+.|++++|.+.|++
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~------------ 410 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQ------------ 410 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH------------
Confidence 0 123457788999999999888763 33556677788889999999999999988
Q ss_pred hhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh------------hhHHHHHHhhhhcCCccccc
Q 035847 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL------------VSWNAMLAGYALGGFREEIT 235 (523)
Q Consensus 168 ~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~------------~t~~~li~~~~~~g~~~~i~ 235 (523)
... .-..+...+..+...|. .++.++|...++.+..... ..+..+..
T Consensus 411 -------aL~-~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~------------ 469 (1157)
T PRK11447 411 -------ALR-MDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE------------ 469 (1157)
T ss_pred -------HHH-hCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH------------
Confidence 322 11223455666666664 4678999998887753211 12333444
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHh-HHHh--------
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI-ALIS-------- 305 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~-~li~-------- 305 (523)
.+...|++++|++.|++..+. .|+ ...+..+...+.+.|+.++|...++.+.+..-......+. ++..
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHH
Confidence 677899999999999999874 454 4566778888999999999999999988743221111221 1110
Q ss_pred ---hh-CCC-----CCcch---------HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCH
Q 035847 306 ---IQ-GLG-----TGSFV---------WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367 (523)
Q Consensus 306 ---~y-~~~-----p~~~~---------~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~ 367 (523)
.+ .+. ++... +..+...+...|+. ++|..+++. ..++...+..+-..+.+.|++
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~--~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE--AEAEALLRQ------QPPSTRIDLTLADWAQQRGDY 619 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH--HHHHHHHHh------CCCCchHHHHHHHHHHHcCCH
Confidence 00 111 11111 11345567778888 888887761 133455667788888889999
Q ss_pred HHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHH
Q 035847 368 DDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKL 430 (523)
Q Consensus 368 ~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 430 (523)
++|.+.+++. ...|+.. ..|+.+.|....+.+.+..|.+......+...+...|+.+++.+.+
T Consensus 620 ~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 620 AAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999998874 4567665 6788888888888888887776654333333344567777775333
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-13 Score=92.66 Aligned_cols=50 Identities=26% Similarity=0.516 Sum_probs=48.5
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh
Q 035847 311 TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363 (523)
Q Consensus 311 p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 363 (523)
||+++||++|++|++.|++ ++|.++|++|.+. |+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~--~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKF--EEALKLFKEMKKR-GIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCH--HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHcC
Confidence 8999999999999999999 9999999999988 999999999999999985
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6e-10 Score=122.22 Aligned_cols=367 Identities=8% Similarity=-0.035 Sum_probs=237.4
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+..-..-.+......|+.++|.+++....... ..+...+..+...+.+.|++++|+.+|++.....
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--------------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~ 79 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM--------------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE 79 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44445556667778899999999998887522 3356679999999999999999999999976553
Q ss_pred ---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHh
Q 035847 101 ---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171 (523)
Q Consensus 101 ---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ 171 (523)
+...+...|+.++|...++..++.. +.+.. +..+-..+...|+.++|...++++
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~a--------------- 142 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQA--------------- 142 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHH---------------
Confidence 6667788999999999999998872 34555 888899999999999999999992
Q ss_pred hhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-CCh------hhHHHHHH--------------------
Q 035847 172 PHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHL------VSWNAMLA-------------------- 223 (523)
Q Consensus 172 ~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-~~~------~t~~~li~-------------------- 223 (523)
-. ..| +...+..+..++.+.|..++|...++...+ |+. .....++.
T Consensus 143 ----l~--~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 143 ----LP--RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred ----HH--hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 22 122 233444455555555555555555554332 110 00000000
Q ss_pred ----hhhhc--CCccc-----------cchhhccCCchHHHHHHHHHHhcCCC-CCHHHHHHHHHHhhccCChhHHHHHH
Q 035847 224 ----GYALG--GFREE-----------ITGFTQYGDGETALEFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 224 ----~~~~~--g~~~~-----------i~~~~~~g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~i~ 285 (523)
.+.+. ..++. +..+...|++++|+..|+.+.+.+.. |+..- ..+..++...|++++|.+.+
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHH
Confidence 00000 00000 01344567777777777777766532 33211 11345677777777777777
Q ss_pred HHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcC----------CccC---Hh
Q 035847 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN----------MEPA---ME 352 (523)
Q Consensus 286 ~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g----------~~p~---~~ 352 (523)
+.+.+.. |.. .......+..+..++...|+. ++|..+++.+..... -.|+ ..
T Consensus 296 ~~~l~~~--p~~-----------~~~~~~~~~~L~~a~~~~g~~--~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 296 TELFYHP--ETI-----------ADLSDEELADLFYSLLESENY--PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhhcC--CCC-----------CCCChHHHHHHHHHHHhcccH--HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 7766531 100 000123455667788999999 999999999986410 1123 23
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCC
Q 035847 353 QYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSH 420 (523)
Q Consensus 353 ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 420 (523)
.+..+...+...|++++|.++++++ ...|+.. ..|+.+.|+...++++++.|++..............
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 4566778889999999999999985 3556665 678999999999999999999876433333334445
Q ss_pred chHHHHHHHHHHHHHHHHHcCCcCCc
Q 035847 421 SLVHKISEKLMRLYSEIKKIGYMKRI 446 (523)
Q Consensus 421 ~~~~~~~~~l~~l~~~m~~~g~~pd~ 446 (523)
++.+++ +.+++++.+ ..||.
T Consensus 441 ~~~~~A----~~~~~~ll~--~~Pd~ 460 (765)
T PRK10049 441 QEWRQM----DVLTDDVVA--REPQD 460 (765)
T ss_pred CCHHHH----HHHHHHHHH--hCCCC
Confidence 566665 355555554 35665
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-10 Score=111.69 Aligned_cols=335 Identities=13% Similarity=0.171 Sum_probs=204.4
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
-..+|+.+-+.+-..|+++.|..++..+++.. ...+..|..+-.++...|+.+.|...|.+-.+.+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--------------p~fida~inla~al~~~~~~~~a~~~~~~alqln 180 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK--------------PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN 180 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--------------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC
Confidence 34577777777777888888888888777653 2356777777778888888888877777666554
Q ss_pred ---------HHHHhhccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhc---------ccccc
Q 035847 101 ---------VYKACSELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEK---------DFSNL 161 (523)
Q Consensus 101 ---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~---------~~~~~ 161 (523)
+-......|++.+|..-+-+.++. .|. ..+|+.|-..+-..|+...|..-|++| ++-++
T Consensus 181 P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNL 258 (966)
T KOG4626|consen 181 PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINL 258 (966)
T ss_pred cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhH
Confidence 111222345666677666666654 333 456777777777777777777777773 11122
Q ss_pred CchhhHhhHhhhhh----hcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh-hhHHHHHHhhhhcCCccc
Q 035847 162 SLLKHGKEIHPHHL----KKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL-VSWNAMLAGYALGGFREE 233 (523)
Q Consensus 162 ~~~~~~~~~~~~~~----~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~-~t~~~li~~~~~~g~~~~ 233 (523)
|.+-....+++..+ +.....|+ .+++..|-..|-..|.+|-|...+++-.+ |+- ..||.|-.
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nlan---------- 328 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLAN---------- 328 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHH----------
Confidence 21111111111110 00122332 33444444445555555555555554432 322 35555555
Q ss_pred cchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCC-
Q 035847 234 ITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT- 311 (523)
Q Consensus 234 i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p- 311 (523)
++-..|++.+|.+.|+.-..- .|+ ....+.|-..+...|.++.|..++....+ +.|
T Consensus 329 --ALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~------------------v~p~ 386 (966)
T KOG4626|consen 329 --ALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE------------------VFPE 386 (966)
T ss_pred --HHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh------------------hChh
Confidence 555555555555555554432 232 23344455555555555555555554443 222
Q ss_pred CcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCCCC-----
Q 035847 312 GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSSA----- 384 (523)
Q Consensus 312 ~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~----- 384 (523)
=...+|.|-..|-+.|++ ++|...+++.. .|.|+ ...|+.|-..|-..|+++.|.+.+.+ +.+.|...
T Consensus 387 ~aaa~nNLa~i~kqqgnl--~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN 461 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNL--DDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN 461 (966)
T ss_pred hhhhhhhHHHHHHhcccH--HHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence 234678888888899999 88988888776 57888 57888888888889999998888776 34555443
Q ss_pred ------CCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 385 ------EPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 385 ------~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
-.||+..|....+..+++.|+-+.
T Consensus 462 Lasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 462 LASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 567888888888899999888665
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-10 Score=113.31 Aligned_cols=320 Identities=14% Similarity=0.181 Sum_probs=252.6
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHH-H
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVL-D 138 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~ 138 (523)
-..+|..+-+.+-..|++.+|+.+|+.|.+.. +-.++...|+.+.|.+.|...++. .|+.+...+-+ .
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 46789999999999999999999999998775 666777889999999999988875 57666544444 3
Q ss_pred HHHhcCCHHHHHHHhhhc----------------cccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChH
Q 035847 139 MFIKCGRMEMASGEFEEK----------------DFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLK 201 (523)
Q Consensus 139 ~~~~~g~~~~A~~~f~~~----------------~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~ 201 (523)
..-..|++++|...+.+| .+...|+.-.|.+-+...++. .|+ ...|-.|-..|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcch
Confidence 444579999999999884 334556777787877777654 554 335666667777777777
Q ss_pred HHHHHHhcCC--CCC-hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCC
Q 035847 202 VAHCKFSKIK--QKH-LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKG 277 (523)
Q Consensus 202 ~A~~vf~~m~--~~~-~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~ 277 (523)
.|...+.+.. .|+ .+.+..|-. -|...|..+-|+..|++-.+ +.|+ ...|+.|-.|+-..|+
T Consensus 270 ~Avs~Y~rAl~lrpn~A~a~gNla~------------iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPNHAVAHGNLAC------------IYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHHHHhcCCcchhhccceEE------------EEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccc
Confidence 7777666543 343 456777766 88899999999999999876 5676 5789999999999999
Q ss_pred hhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHH
Q 035847 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCC 356 (523)
Q Consensus 278 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~ 356 (523)
+.+|...+.......- ...-+-|.|-..|...|.+ ++|.++|.... .+.|. ...++.
T Consensus 336 V~ea~~cYnkaL~l~p-----------------~hadam~NLgni~~E~~~~--e~A~~ly~~al---~v~p~~aaa~nN 393 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCP-----------------NHADAMNNLGNIYREQGKI--EEATRLYLKAL---EVFPEFAAAHNN 393 (966)
T ss_pred hHHHHHHHHHHHHhCC-----------------ccHHHHHHHHHHHHHhccc--hHHHHHHHHHH---hhChhhhhhhhh
Confidence 9999999988876421 1234678899999999999 99999998775 45677 578899
Q ss_pred HHHHHHhhCCHHHHHHHHHh-CCCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHH
Q 035847 357 MVDLLARAGQFDDTLNFMKK-MPFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVH 424 (523)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~-m~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
|-..|-..|++++|...+++ +.++|... ..|++..|.....+.+..+|.-....+.+.+-++..|.+.
T Consensus 394 La~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~ 473 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP 473 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH
Confidence 99999999999999999887 56777766 5677778888889999999987777777888888899998
Q ss_pred HHHHH
Q 035847 425 KISEK 429 (523)
Q Consensus 425 ~~~~~ 429 (523)
++...
T Consensus 474 ~AI~s 478 (966)
T KOG4626|consen 474 EAIQS 478 (966)
T ss_pred HHHHH
Confidence 88643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-08 Score=109.59 Aligned_cols=243 Identities=8% Similarity=0.001 Sum_probs=157.6
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCc--chHHHHHHHHHhcCCchHHHHHHHHhhHcc--
Q 035847 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNV--FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-- 100 (523)
Q Consensus 25 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-- 100 (523)
|...|-. .+.|+++.|...+.+..+.. |+. ..+ .++..+...|+.++|+..+++.....
T Consensus 38 y~~aii~-~r~Gd~~~Al~~L~qaL~~~---------------P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~ 100 (822)
T PRK14574 38 YDSLIIR-ARAGDTAPVLDYLQEESKAG---------------PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNI 100 (822)
T ss_pred HHHHHHH-HhCCCHHHHHHHHHHHHhhC---------------ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCC
Confidence 4444433 36777888888877777653 332 233 66777777788888888777766332
Q ss_pred -------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc---------------cc
Q 035847 101 -------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK---------------DF 158 (523)
Q Consensus 101 -------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~---------------~~ 158 (523)
+...+...|+++.|.++++.+.+.. +-+..++..++..|.+.++.++|+..++++ ..
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~ 179 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLN 179 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence 2335556677888888888777663 234566667777777778888887777772 00
Q ss_pred cccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCh-------------------
Q 035847 159 SNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHL------------------- 215 (523)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~------------------- 215 (523)
...+....+.+.+..+++. .| +...+..++....+.|-...|.++..+-++ +..
T Consensus 180 ~~~~~~~~AL~~~ekll~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~ 256 (822)
T PRK14574 180 RATDRNYDALQASSEAVRL---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLP 256 (822)
T ss_pred HhcchHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccc
Confidence 0112222244444444544 34 466777888888888888888877765441 000
Q ss_pred ---------------hhHHHHHHhhhhcCC-c-----------cccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHH
Q 035847 216 ---------------VSWNAMLAGYALGGF-R-----------EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268 (523)
Q Consensus 216 ---------------~t~~~li~~~~~~g~-~-----------~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 268 (523)
.-+..++. +-+. + +.+.++...|+..++++.|+.|...|.+...++-..+
T Consensus 257 ~~~~~~r~~~~d~ala~~~~l~~---~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 257 TRSETERFDIADKALADYQNLLT---RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred cccchhhHHHHHHHHHHHHHHHh---hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 01112221 1111 1 1177888899999999999999998877566688889
Q ss_pred HHHhhccCChhHHHHHHHHHHHh
Q 035847 269 LAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 269 l~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
.++|...+.+++|..++..+...
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhc
Confidence 99999999999999999988664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-08 Score=112.72 Aligned_cols=381 Identities=10% Similarity=-0.004 Sum_probs=237.3
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHH-HHhccCCCChHHHHHHHHHHHHhCCCcchHHH-----------------HhcC
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALI-FQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-----------------MFEK 64 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~f~~ 64 (523)
+++|+..++ .......|+..+.... .+.+...++++.+..++..+.+.+........ ++..
T Consensus 163 ~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~ 241 (987)
T PRK09782 163 LPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQ 241 (987)
T ss_pred HHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhch
Confidence 355666666 3333444445555555 78888899999999999998887654333211 2333
Q ss_pred CCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-----------------------------------------HHH
Q 035847 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------------------------------------VYK 103 (523)
Q Consensus 65 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------------------------------------ll~ 103 (523)
..+.|...+..+...|.+.|+.++|.++++++.... .+.
T Consensus 242 ~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (987)
T PRK09782 242 GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLP 321 (987)
T ss_pred hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHH
Confidence 334578889999999999999999999999886542 133
Q ss_pred HhhccCChHHHHHHH-----------------------------HHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhh
Q 035847 104 ACSELKDHRVGKDVY-----------------------------DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154 (523)
Q Consensus 104 ~~~~~~~~~~a~~~~-----------------------------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~ 154 (523)
-+.+.++.+.+.++. ..|.+.. +-+....--+--...+.|+.++|.++|+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~ 400 (987)
T PRK09782 322 VLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLL 400 (987)
T ss_pred HHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 333444443333331 1121110 0011112222222344566777777776
Q ss_pred hcccc---------------------------------------------ccCchhhHhhHhhhhhhcCCC-CC--chhH
Q 035847 155 EKDFS---------------------------------------------NLSLLKHGKEIHPHHLKKDDL-ES--DLLV 186 (523)
Q Consensus 155 ~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~g~-~~--d~~~ 186 (523)
++ .. -.+....+........+..+. .+ +...
T Consensus 401 ~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a 479 (987)
T PRK09782 401 QR-YPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA 479 (987)
T ss_pred Hh-cCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH
Confidence 62 11 011111111111122222122 22 4566
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 187 NNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 187 ~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
|..+-..+.. |+.++|...|.+.. .|+. |+.+..++ .+.+.|++++|...|+++... .|+...
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~--~~~L~lA~----------al~~~Gr~eeAi~~~rka~~~--~p~~~a 544 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQRQPDA--WQHRAVAY----------QAYQVEDYATALAAWQKISLH--DMSNED 544 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHhCCch--HHHHHHHH----------HHHHCCCHHHHHHHHHHHhcc--CCCcHH
Confidence 7777777776 78888888766554 3553 44443311 445789999999999987553 455555
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHH-hh------------h----CCCCCcchHHHHHHHHHhcC
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI-SI------------Q----GLGTGSFVWNSLIDMYGRCG 327 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li-~~------------y----~~~p~~~~~n~li~~~~~~g 327 (523)
+..+..++.+.|+.+.|.+.+...++..... ...+..+. .. | .+.|+...|..+-..+.+.|
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGD-NALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 6666677788899999999998888764222 22222211 11 1 34677778888888899999
Q ss_pred CCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHH
Q 035847 328 AIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEH 394 (523)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~ 394 (523)
+. ++|...|++.... .|+ ...++.+-..+...|+.++|...+++. ...|+.. ..|+.+.|+.
T Consensus 624 ~~--deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 624 NV--PAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred CH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99 8999999888754 565 566777777888899999999888873 4667666 7888888999
Q ss_pred HHHHHHhhCCCCC
Q 035847 395 AARHLFELEPLSS 407 (523)
Q Consensus 395 ~~~~l~~~~~~~~ 407 (523)
.+++.++++|.+.
T Consensus 699 ~l~~Al~l~P~~a 711 (987)
T PRK09782 699 YARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHhcCCCCc
Confidence 9999998888765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-08 Score=106.83 Aligned_cols=321 Identities=13% Similarity=0.013 Sum_probs=214.6
Q ss_pred chhHHHHHHHHhhhCCCCC-CcchHHHHHHhccCCCChHHHHHHHHHHHHhC-CCcchHHH----------------Hhc
Q 035847 2 VIKNVTLLLQSMDLTNPDE-CTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-VELCAFLG----------------MFE 63 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~----------------~f~ 63 (523)
++++|++.+....+. .| +...|..+-.++...|++++|..-+..+.... +....... .++
T Consensus 175 ~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~ 252 (615)
T TIGR00990 175 DWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILE 252 (615)
T ss_pred CHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888887764 44 44578888888999999999987665443221 11100000 111
Q ss_pred CCCCCCcchHHHHHH------------------------------HH------HhcCCchHHHHHHHHhhHcc-------
Q 035847 64 KMPERNVFSWTSMMG------------------------------MY------NVLGYYEEIVNLFYLLIDEG------- 100 (523)
Q Consensus 64 ~~~~~~~~~~~~li~------------------------------~~------~~~g~~~~A~~l~~~m~~~g------- 100 (523)
.- .++..+|..+-. .+ ...+++++|++.|++....+
T Consensus 253 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a 331 (615)
T TIGR00990 253 TK-PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA 331 (615)
T ss_pred cC-CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH
Confidence 11 111111111100 00 11256778888887776532
Q ss_pred -----HHHHhhccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhh
Q 035847 101 -----VYKACSELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174 (523)
Q Consensus 101 -----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~ 174 (523)
+-..+...|++++|...++..++. .|+ ...|..+...|...|++++|...|++ +
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~------------------a 391 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDK------------------A 391 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH------------------H
Confidence 333344678888888888887765 344 44677777778888888888888887 1
Q ss_pred hhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHH
Q 035847 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251 (523)
Q Consensus 175 ~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~ 251 (523)
++. -..+..+|..+...|...|++++|...|+...+ | +...|..+-. .+.+.|++++|+..|+
T Consensus 392 l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~------------~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 392 LKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV------------TQYKEGSIASSMATFR 457 (615)
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH------------HHHHCCCHHHHHHHHH
Confidence 222 223467888899999999999999999988753 4 4556666766 7888999999999999
Q ss_pred HHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCc-chHHHHHHHHHhcCCC
Q 035847 252 RMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS-FVWNSLIDMYGRCGAI 329 (523)
Q Consensus 252 ~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~-~~~n~li~~~~~~g~~ 329 (523)
+..+. .| +...|+.+-..+...|++++|.+.++..++..-..+.. ..+. ..++..+..|...|+.
T Consensus 458 ~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~-----------~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 458 RCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM-----------YMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred HHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc-----------cccHHHHHHHHHHHHHHhhhH
Confidence 98764 34 46778888888999999999999999987743211100 0011 1223333344556899
Q ss_pred chHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 330 QKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 330 ~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
++|..+++...+. .|+ ...+..+...+.+.|++++|.+++++.
T Consensus 525 --~eA~~~~~kAl~l---~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 525 --IEAENLCEKALII---DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred --HHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999987654 455 457889999999999999999999884
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-10 Score=116.10 Aligned_cols=274 Identities=11% Similarity=0.023 Sum_probs=178.3
Q ss_pred HHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCch
Q 035847 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87 (523)
Q Consensus 8 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 87 (523)
.++-.|...|+.||.+||.++|.-||..|+.+.|. +|..|....+ .-+...++.++.+..++++.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL-------------pv~e~vf~~lv~sh~~And~E 76 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL-------------PVREGVFRGLVASHKEANDAE 76 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc-------------cccchhHHHHHhccccccccc
Confidence 45667888899999999999999999999999888 8888876654 335677888888888877776
Q ss_pred HHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH---HHHHhhhc--cccccC
Q 035847 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM---ASGEFEEK--DFSNLS 162 (523)
Q Consensus 88 ~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~f~~~--~~~~~~ 162 (523)
.+. .|...+|+.|..+|...||+.. ..+.++.. .++..|
T Consensus 77 npk------------------------------------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~G 120 (1088)
T KOG4318|consen 77 NPK------------------------------------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHG 120 (1088)
T ss_pred CCC------------------------------------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhc
Confidence 554 4667788888888888888654 22211110 222222
Q ss_pred chhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHhhhhcCCccccchhhcc
Q 035847 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQY 240 (523)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~ 240 (523)
.......+.-.+--..+.-||.. ..|....-.|-++.+.+++..++. .+. +.-..|. -....
T Consensus 121 vgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLr------------qnv~~ 184 (1088)
T KOG4318|consen 121 VGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLR------------QNVVD 184 (1088)
T ss_pred cCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHH------------HhccC
Confidence 22222222221111224455543 334444556778888888877763 111 1111344 33333
Q ss_pred CCchHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHH
Q 035847 241 GDGETALEFFSRMIQTDM-QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319 (523)
Q Consensus 241 g~~~~A~~lf~~M~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~l 319 (523)
..+ ..++ ..|.+.+. .|++.+|..++.+-.-.|+++.|..++..|.+.|++.+.. -|-.|
T Consensus 185 ntp--vekL-l~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H----------------yFwpL 245 (1088)
T KOG4318|consen 185 NTP--VEKL-LNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH----------------YFWPL 245 (1088)
T ss_pred Cch--HHHH-HHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc----------------cchhh
Confidence 322 2222 22333333 5999999999999999999999999999999999887542 22333
Q ss_pred HHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHH
Q 035847 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372 (523)
Q Consensus 320 i~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 372 (523)
|-| .+.. .-+..+++.|+.. |+.|+.+||.-.+-.+..+|....+..
T Consensus 246 l~g---~~~~--q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 246 LLG---INAA--QVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQTKYGEE 292 (1088)
T ss_pred hhc---Cccc--hHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchhhhhccc
Confidence 333 5666 6677788888876 999999999988888877666554433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-09 Score=99.76 Aligned_cols=308 Identities=13% Similarity=0.191 Sum_probs=200.6
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH--HhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
.|=|.|++.. .+|.+..+--+++.|.+.|...+.-+. +|+ |+.-|-...-+-.-.+-|-.|...|
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~------------LV~~~Ns~~~~~~E~~~Fv~~~~~~ 183 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFR------------LVTYYNSSNVPFAEWEEFVGMRNFG 183 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHH------------HHHhhcCCCCcchhHHHHhhccccc
Confidence 3556666654 467788888999999998875433222 221 1111111111112233344444333
Q ss_pred -HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhcc-------------ccccCchhh
Q 035847 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD-------------FSNLSLLKH 166 (523)
Q Consensus 101 -ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------------~~~~~~~~~ 166 (523)
=-..-.+.|++ |. ++.+. .+.+..+|.++|.+.||-...+.|..++.+.. .-....+..
T Consensus 184 E~S~~sWK~G~v--Ad-L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~ 256 (625)
T KOG4422|consen 184 EDSTSSWKSGAV--AD-LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV 256 (625)
T ss_pred cccccccccccH--HH-HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc
Confidence 00000011111 22 22221 24455677777777777777777777776631 111123445
Q ss_pred HhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHH----HHHhcCC----CCChhhHHHHHHhhhhcCCccccchhh
Q 035847 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAH----CKFSKIK----QKHLVSWNAMLAGYALGGFREEITGFT 238 (523)
Q Consensus 167 ~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~----~vf~~m~----~~~~~t~~~li~~~~~~g~~~~i~~~~ 238 (523)
++.+...|... ...||..|+|+++...++.|+++.|+ +++.+|+ +|...||.-+|. -++
T Consensus 257 ~K~Lv~EMisq-km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik------------~f~ 323 (625)
T KOG4422|consen 257 GKKLVAEMISQ-KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIK------------NFK 323 (625)
T ss_pred cHHHHHHHHHh-hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHH------------Hhc
Confidence 67777777777 89999999999999999999988765 4556665 599999999999 777
Q ss_pred ccCCchH-HHHHHHHHHh----cCCCC----CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCC
Q 035847 239 QYGDGET-ALEFFSRMIQ----TDMQP----NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309 (523)
Q Consensus 239 ~~g~~~~-A~~lf~~M~~----~g~~p----~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 309 (523)
+.+++.+ |..+..+.+. ..++| |...|.+.++.|.++.+.+.|.++++.+....-.. -+
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~------------~i 391 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK------------FI 391 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh------------hc
Confidence 8777654 5555555544 23444 56778899999999999999999998876521100 01
Q ss_pred CCC---cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 310 GTG---SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 310 ~p~---~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
.|+ .+=|..+....|+.... +.-+..++.|.-. -+-|+..+...++++..-.|+++-.-+++.+|.
T Consensus 392 g~~~~~~fYyr~~~~licq~es~--~~~~~~Y~~lVP~-~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~ 460 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESI--DVTLKWYEDLVPS-AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK 460 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccc-eecCCchhHHHHHHHHhhcCcchhHHHHHHHHH
Confidence 122 23356688888888888 8899999999876 678888999999999999999999888888873
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.5e-08 Score=97.57 Aligned_cols=270 Identities=11% Similarity=0.094 Sum_probs=203.5
Q ss_pred CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------HHHH
Q 035847 35 LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKA 104 (523)
Q Consensus 35 ~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------ll~~ 104 (523)
.|+++.|++......+.+- . ....|-.......+.|+++.|.+.|.++.+.. ....
T Consensus 97 eGd~~~A~k~l~~~~~~~~-------------~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE-------------Q-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred CCCHHHHHHHHHHHHhccc-------------c-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 5888888876665433210 1 12334333344478899999999999987753 1345
Q ss_pred hhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch
Q 035847 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184 (523)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~ 184 (523)
+...|+.+.|.+.++...+.. +-+..+...+...|.+.|++++|..++.. +++.+..++.
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~-------------------l~k~~~~~~~ 222 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPS-------------------MAKAHVGDEE 222 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHH-------------------HHHcCCCCHH
Confidence 667899999999999998875 44678899999999999999999999999 6553433222
Q ss_pred -------hHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHH
Q 035847 185 -------LVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254 (523)
Q Consensus 185 -------~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~ 254 (523)
.+|..++....+..+.+...++++.+++ .+......+.. .+...|+.++|.+++++..
T Consensus 223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~------------~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAE------------HLIECDDHDTAQQIILDGL 290 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHH------------HHHHCCCHHHHHHHHHHHH
Confidence 2344555555566677888888888864 36667777777 8889999999999999988
Q ss_pred hcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHH
Q 035847 255 QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334 (523)
Q Consensus 255 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a 334 (523)
+. .||... .++.+....++.+.+.+..+...+.. +-|.....++-..+.+.+++ ++|
T Consensus 291 ~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-----------------P~~~~l~l~lgrl~~~~~~~--~~A 347 (398)
T PRK10747 291 KR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-----------------GDTPLLWSTLGQLLMKHGEW--QEA 347 (398)
T ss_pred hc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-----------------CCCHHHHHHHHHHHHHCCCH--HHH
Confidence 74 455522 23344455689999999988887642 12344577788889999999 999
Q ss_pred HHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 335 WRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 335 ~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
.+.|+...+. .|+..+|..|..++.+.|+.++|.+++++
T Consensus 348 ~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 348 SLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999854 79999999999999999999999999886
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-10 Score=108.44 Aligned_cols=255 Identities=17% Similarity=0.228 Sum_probs=107.3
Q ss_pred HHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhc
Q 035847 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSE 107 (523)
Q Consensus 28 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~ 107 (523)
+-..+.+.|+++.|.+++........ +..|..-|..+-...-..++.++|++.++++...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~------------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~------- 74 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIA------------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD------- 74 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc------------ccccccccccccccccccccccccccccccccccc-------
Confidence 34555566777777776643322210 01233444444434444566666666666665543
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~ 187 (523)
.-+...+..++.. ...+++++|..+++++ .+. .++...+
T Consensus 75 -------------------~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~------------------~~~---~~~~~~l 113 (280)
T PF13429_consen 75 -------------------KANPQDYERLIQL-LQDGDPEEALKLAEKA------------------YER---DGDPRYL 113 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------ccccccccccccc-cccccccccccccccc------------------ccc---ccccchh
Confidence 3356677777777 7889999999988770 222 3456677
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC-----CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSKIK-----QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN- 261 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~m~-----~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~- 261 (523)
..++..|.+.++.+++..+++... .++...|..+.. .+.+.|+.++|++.|++..+. .|+
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~------------~~~~~G~~~~A~~~~~~al~~--~P~~ 179 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAE------------IYEQLGDPDKALRDYRKALEL--DPDD 179 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH------------HHHHCCHHHHHHHHHHHHHHH---TT-
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHc--CCCC
Confidence 788899999999999999988754 245667777777 888999999999999999874 564
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHh
Q 035847 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341 (523)
Q Consensus 262 ~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m 341 (523)
....+.++..+...|+.+++.+++....+.. ..|...|..+-.+|...|+. ++|..+|+..
T Consensus 180 ~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~la~~~~~lg~~--~~Al~~~~~~ 240 (280)
T PF13429_consen 180 PDARNALAWLLIDMGDYDEAREALKRLLKAA-----------------PDDPDLWDALAAAYLQLGRY--EEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------------------HTSCCHCHHHHHHHHHHT-H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----------------cCHHHHHHHHHHHhcccccc--cccccccccc
Confidence 6678888889999999999999888887743 23567788999999999999 9999999998
Q ss_pred HHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 342 ~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.+. -+.|......+.+++...|+.++|.++.++.
T Consensus 241 ~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 241 LKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHH--STT-HHHHHHHHHHHT---------------
T ss_pred ccc--ccccccccccccccccccccccccccccccc
Confidence 875 2336788889999999999999999987663
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-07 Score=100.51 Aligned_cols=167 Identities=7% Similarity=0.030 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---------ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHH
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQK---------HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~~~---------~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~ 254 (523)
..+--++.++|...+..++|..+++....+ +......|.- +|..++++++|..+++++.
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y------------A~ld~e~~~~A~~~l~~~~ 394 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY------------SLNESEQLDKAYQFAVNYS 394 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH------------HHHhcccHHHHHHHHHHHH
Confidence 345556667777777777777777765321 1222345555 8888999999999999998
Q ss_pred hcC-------------CCCCHHHH-HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHH
Q 035847 255 QTD-------------MQPNTISL-SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320 (523)
Q Consensus 255 ~~g-------------~~p~~~t~-~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li 320 (523)
+.- ..||-..+ ..+...+...|++.+|++.++.+.... +-|...++.+-
T Consensus 395 ~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-----------------P~n~~l~~~~A 457 (822)
T PRK14574 395 EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-----------------PANQNLRIALA 457 (822)
T ss_pred hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHH
Confidence 731 12333333 334556788899999999999987632 34677888899
Q ss_pred HHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC
Q 035847 321 DMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA 384 (523)
Q Consensus 321 ~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 384 (523)
+.+...|.+ .+|...++... .+.|+ ..+.......+...|++++|..++++. ...|+..
T Consensus 458 ~v~~~Rg~p--~~A~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 458 SIYLARDLP--RKAEQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHhcCCH--HHHHHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 999999999 99999996665 44676 466667778888889999998888664 2345443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-07 Score=103.24 Aligned_cols=220 Identities=12% Similarity=-0.038 Sum_probs=156.7
Q ss_pred CChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHH
Q 035847 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ 188 (523)
++.++|...+...... .|+......+...+.+.|++++|...|++ ... ..|+...+.
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rk-------------------a~~--~~p~~~a~~ 546 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQK-------------------ISL--HDMSNEDLL 546 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHH-------------------Hhc--cCCCcHHHH
Confidence 5666666666555544 46644333344455688999999999987 433 234444566
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 268 (523)
.+...+.+.|+.++|...|+...+.+...++....... ...+.|++++|+..|++..+. .|+...|..+
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~---------~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~L 615 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHA---------QRYIPGQPELALNDLTRSLNI--APSANAYVAR 615 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHH---------HHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 66778888999999999998765432222222221000 333559999999999988764 5677788888
Q ss_pred HHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCc
Q 035847 269 LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348 (523)
Q Consensus 269 l~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~ 348 (523)
-.++.+.|+.++|.+.+...++.. +.+...++.+-..+...|+. ++|..+|++..+. .
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~-----------------Pd~~~a~~nLG~aL~~~G~~--eeAi~~l~~AL~l---~ 673 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELE-----------------PNNSNYQAALGYALWDSGDI--AQSREMLERAHKG---L 673 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHh---C
Confidence 888999999999999998887742 22445677777889999999 9999999888764 5
Q ss_pred cC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC
Q 035847 349 PA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA 384 (523)
Q Consensus 349 p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 384 (523)
|+ ...+..+-.++...|++++|...+++. ...|+..
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 55 577788888999999999999998884 6777776
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.2e-10 Score=108.01 Aligned_cols=240 Identities=14% Similarity=0.156 Sum_probs=106.3
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhc-cCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRC-PKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMY 80 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~ 80 (523)
++++|++++..-.....+|+...|-.++..+ ...++.+.|...++.+...+- -+...+..++..
T Consensus 23 ~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~--------------~~~~~~~~l~~l- 87 (280)
T PF13429_consen 23 DYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK--------------ANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------cccccccccccc-
Confidence 4678999986544443356666666665544 467899999999999987763 355667777777
Q ss_pred HhcCCchHHHHHHHHhhHcc--------HHHHhhccCChHHHHHHHHHHHHhc-CCCCceeHhHHHHHHHhcCCHHHHHH
Q 035847 81 NVLGYYEEIVNLFYLLIDEG--------VYKACSELKDHRVGKDVYDYMISIK-FEGNACVKRPVLDMFIKCGRMEMASG 151 (523)
Q Consensus 81 ~~~g~~~~A~~l~~~m~~~g--------ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~ 151 (523)
...+++++|++++....+.. ++..+...++.+.+.++++.+.... ..++...|..+-..+.+.|+.++|.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78999999999987764433 6777788999999999999987543 35678889999999999999999999
Q ss_pred HhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhh
Q 035847 152 EFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYAL 227 (523)
Q Consensus 152 ~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~ 227 (523)
.|+++ ++. .| |..+.+.++..+...|+.+++..++....+ .|...|..+-.
T Consensus 168 ~~~~a------------------l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~---- 222 (280)
T PF13429_consen 168 DYRKA------------------LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA---- 222 (280)
T ss_dssp HHHHH------------------HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH----
T ss_pred HHHHH------------------HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH----
Confidence 99991 333 55 477889999999999999998888876643 45667888888
Q ss_pred cCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 228 ~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
+|...|+.++|+..|++..... +.|..+...+..++...|+.++|.++..++.+
T Consensus 223 --------~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 223 --------AYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --------HHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred --------Hhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 8889999999999999988742 23677788888999999999999999877654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.3e-07 Score=92.54 Aligned_cols=273 Identities=9% Similarity=0.029 Sum_probs=194.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC-cchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------HH
Q 035847 34 KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN-VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VY 102 (523)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------ll 102 (523)
..|+++.|.+......+.. |+ ...|-..-..+.+.|+++.|.+.|.+..+.. ..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~---------------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA---------------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 5789999999887765542 33 2333344456667799999999998864431 24
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 182 (523)
......|+.+.|.+.++.+.+.. +-+..++..+...|.+.|+++.|.+.+.. ..+.+..+
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~-------------------l~k~~~~~ 220 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDN-------------------MAKAGLFD 220 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHH-------------------HHHcCCCC
Confidence 44456899999999999999875 44667889999999999999999999999 55534433
Q ss_pred chhH-------HHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 183 DLLV-------NNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 183 d~~~-------~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
.... +..+++.-......+...+.++..++ .+...+..+.. .+.+.|+.++|.+++++
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~------------~l~~~g~~~~A~~~l~~ 288 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAE------------HLIDCDDHDSAQEIIFD 288 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH------------HHHHCCChHHHHHHHHH
Confidence 2222 22222222233345566667777664 37778888888 88999999999999999
Q ss_pred HHhcCCCCCHHHHH-HHHHH--hhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCc---chHHHHHHHHHhc
Q 035847 253 MIQTDMQPNTISLS-GVLAA--CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS---FVWNSLIDMYGRC 326 (523)
Q Consensus 253 M~~~g~~p~~~t~~-~ll~a--~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~---~~~n~li~~~~~~ 326 (523)
..+. .||..... .++.. ....++.+.+.+.++...+. .|+. ....++-..+.+.
T Consensus 289 ~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~------------------~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 289 GLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN------------------VDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred HHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh------------------CCCChhHHHHHHHHHHHHHc
Confidence 9885 34443210 12222 23346777777777766653 2333 3445777888999
Q ss_pred CCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 327 GAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 327 g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
|++ ++|.++|+..... ...|+...+..+...+-+.|+.++|.+++++
T Consensus 349 ~~~--~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 349 GEF--IEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred ccH--HHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999 9999999953332 5589999999999999999999999999887
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-07 Score=92.62 Aligned_cols=270 Identities=9% Similarity=-0.014 Sum_probs=195.6
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHH--HHHHHH
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWT--SMMGMY 80 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~--~li~~~ 80 (523)
+++|.+.+..-.+.+-.| ...|-....+..+.|+++.+...+..+.+. .|+...+- .....+
T Consensus 100 ~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---------------~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 100 YQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL---------------ADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------CCcchHHHHHHHHHHH
Confidence 456666666544432111 222333344446899999999999998764 34443332 335678
Q ss_pred HhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCc-------eeHhHHHHHHHhcC
Q 035847 81 NVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNA-------CVKRPVLDMFIKCG 144 (523)
Q Consensus 81 ~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g 144 (523)
...|+++.|...++++.+.. +...+.+.|+++.+.+++..+.+.+..++. .+|..++....+..
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999998776 788888999999999999999988754322 23344455444555
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHh
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~ 224 (523)
+.+...++++. .-. ....++....++...+.+.|+.++|.+++++..+.....--.++.
T Consensus 244 ~~~~l~~~w~~-------------------lp~-~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~- 302 (398)
T PRK10747 244 GSEGLKRWWKN-------------------QSR-KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLI- 302 (398)
T ss_pred CHHHHHHHHHh-------------------CCH-HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHH-
Confidence 56666666666 322 234577888999999999999999999998765422222222334
Q ss_pred hhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH-HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHH
Q 035847 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT-ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303 (523)
Q Consensus 225 ~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~l 303 (523)
+....++++++++..+...+. .|+. ..+..+-..|.+.+++++|.+.++...+.
T Consensus 303 -----------~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~------------ 357 (398)
T PRK10747 303 -----------PRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ------------ 357 (398)
T ss_pred -----------hhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------
Confidence 556679999999999999875 4554 45677888899999999999999999874
Q ss_pred HhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhH
Q 035847 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342 (523)
Q Consensus 304 i~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~ 342 (523)
.|+..+|-.|-..+.+.|+. ++|.+++++-.
T Consensus 358 ------~P~~~~~~~La~~~~~~g~~--~~A~~~~~~~l 388 (398)
T PRK10747 358 ------RPDAYDYAWLADALDRLHKP--EEAAAMRRDGL 388 (398)
T ss_pred ------CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHH
Confidence 56778888899999999999 99999988653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-09 Score=66.71 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=32.1
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|+.||..+||+||++|||.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 899999999999999999999999999999995
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-06 Score=79.82 Aligned_cols=279 Identities=17% Similarity=0.154 Sum_probs=164.4
Q ss_pred chhHHHHHHHHhhhCCCCCCcc-hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcc------hHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTV-TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVF------SWT 74 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~------~~~ 74 (523)
+.++|.++|-+|.+. .|..+ +--+|=+.|-+.|..+.|.++|..+.++ ||.. .--
T Consensus 50 Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----------------pdlT~~qr~lAl~ 111 (389)
T COG2956 50 QPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----------------PDLTFEQRLLALQ 111 (389)
T ss_pred CcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----------------CCCchHHHHHHHH
Confidence 356677777777653 22222 2223334555666777777777766542 2221 122
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhh
Q 035847 75 SMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154 (523)
Q Consensus 75 ~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~ 154 (523)
-|-.-|...|-++.|..+|..+.++| ..-....--|+..|-+..+|++|..+-+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~--------------------------efa~~AlqqLl~IYQ~treW~KAId~A~ 165 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEG--------------------------EFAEGALQQLLNIYQATREWEKAIDVAE 165 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcch--------------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 23344555566666666665555543 2223345567788888888888887777
Q ss_pred hccccccCchhhHhhHhhhhhhcCCCCCc----hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHhhhhc
Q 035847 155 EKDFSNLSLLKHGKEIHPHHLKKDDLESD----LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALG 228 (523)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~d----~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~~~li~~~~~~ 228 (523)
+ +...+-.+. ..-|.-|-..+.-..+++.|..++....+ |+-+--+.++.
T Consensus 166 ~-------------------L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG----- 221 (389)
T COG2956 166 R-------------------LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG----- 221 (389)
T ss_pred H-------------------HHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh-----
Confidence 6 322122221 12334444555556778888888876654 33222222221
Q ss_pred CCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhC
Q 035847 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308 (523)
Q Consensus 229 g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 308 (523)
+ -+...|+++.|++.++...+.+..--..+...|..+|...|+.+++...+..+.+..-.++
T Consensus 222 -~-----v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~------------ 283 (389)
T COG2956 222 -R-----VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD------------ 283 (389)
T ss_pred -H-----HHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc------------
Confidence 0 5567888999999998888876655667777888888889999888888877766432222
Q ss_pred CCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHH---hhCCHHHHHHHHHhC
Q 035847 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA---RAGQFDDTLNFMKKM 377 (523)
Q Consensus 309 ~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~---~~g~~~~A~~~~~~m 377 (523)
.-+.|-.--....-. +.|..++.+-... +|+...+..+|+.-. ..|...+-+.++++|
T Consensus 284 ------~~l~l~~lie~~~G~--~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 284 ------AELMLADLIELQEGI--DAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred ------HHHHHHHHHHHhhCh--HHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 112222222222223 6677766655544 799999999998654 344566666666666
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-07 Score=84.12 Aligned_cols=189 Identities=12% Similarity=0.042 Sum_probs=134.3
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (523)
...|..+...|...|++++|++.|++..... +...+...|+.+.|.+.+....+.. +.+...+..+...|
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 3455556666666666666666666654432 4444555666666666666666553 34556778888899
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Chhh
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVS 217 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t 217 (523)
...|++++|.+.|+++ +...........+..+...|.+.|+.++|...|+...+ | +...
T Consensus 110 ~~~g~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 171 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQA------------------IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPES 171 (234)
T ss_pred HHcccHHHHHHHHHHH------------------HhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHH
Confidence 9999999999999981 11111122345677788889999999999999987653 3 3457
Q ss_pred HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 218 ~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
|..+.. .+.+.|++++|.+.+++..+. ...+...+..+...+...|+.+.+..+.+.+.+
T Consensus 172 ~~~la~------------~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 172 LLELAE------------LYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHH------------HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777 888999999999999998876 344566677777778888999999988777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.9e-09 Score=64.28 Aligned_cols=33 Identities=24% Similarity=0.561 Sum_probs=26.2
Q ss_pred CCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 346 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
|+.||..||++||++||+.|++++|.+++++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 777888888888888888888888888888773
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-06 Score=81.68 Aligned_cols=196 Identities=15% Similarity=0.177 Sum_probs=155.2
Q ss_pred CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
....+..+...|.+.|++++|...|++ ... ..+.+...+..+...|...|+.++|.+.|+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~-------------------~l~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 89 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDK-------------------ALE-HDPDDYLAYLALALYYQQLGELEKAEDSFR 89 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------HHH-hCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345677888999999999999999998 322 123346788889999999999999999998
Q ss_pred cCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHH
Q 035847 209 KIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 209 ~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i 284 (523)
...+ .+...+..+.. .+...|++++|.+.|++.......| +...+..+-..+...|+.++|.+.
T Consensus 90 ~al~~~~~~~~~~~~~~~------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 90 RALTLNPNNGDVLNNYGT------------FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHhhCCCCHHHHHHHHH------------HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7653 34456777777 8889999999999999998753333 345566677788899999999999
Q ss_pred HHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhh
Q 035847 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364 (523)
Q Consensus 285 ~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~ 364 (523)
+....+.. +.+...|..+...+...|+. ++|..++++..+. ..++...+..+...+...
T Consensus 158 ~~~~~~~~-----------------~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 216 (234)
T TIGR02521 158 LTRALQID-----------------PQRPESLLELAELYYLRGQY--KDARAYLERYQQT--YNQTAESLWLGIRIARAL 216 (234)
T ss_pred HHHHHHhC-----------------cCChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 99887742 12345678888999999999 9999999998865 244567777888889999
Q ss_pred CCHHHHHHHHHhC
Q 035847 365 GQFDDTLNFMKKM 377 (523)
Q Consensus 365 g~~~~A~~~~~~m 377 (523)
|+.++|..+.+.+
T Consensus 217 ~~~~~a~~~~~~~ 229 (234)
T TIGR02521 217 GDVAAAQRYGAQL 229 (234)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999987765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-06 Score=88.24 Aligned_cols=285 Identities=12% Similarity=0.066 Sum_probs=197.3
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
+.++|+.+|...... +.-+......+-++|-..+++++++.+|+.+.+..- +...++..|.+.+--+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p-----------~rv~~meiyST~LWHLq 401 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEP-----------YRVKGMEIYSTTLWHLQ 401 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------ccccchhHHHHHHHHHH
Confidence 356777777774332 222234455555677777778888888777776431 11346667776665432
Q ss_pred hcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhcccccc
Q 035847 82 VLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 161 (523)
+ +-++..+.+ ++.+ . -+-.+.+|-++-+.|+-.++.+.|.+.|++|
T Consensus 402 ~----~v~Ls~Laq--------------------~Li~----~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RA----- 447 (638)
T KOG1126|consen 402 D----EVALSYLAQ--------------------DLID----T-DPNSPESWCALGNCFSLQKDHDTAIKCFKRA----- 447 (638)
T ss_pred h----hHHHHHHHH--------------------HHHh----h-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHh-----
Confidence 1 222222211 1111 1 1345789999999999999999999999982
Q ss_pred CchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhcc
Q 035847 162 SLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240 (523)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~ 240 (523)
+ .+.| ..++|+.+-+-+.-...+|.|..-|+.....|...||+.-. .|. .|.+.
T Consensus 448 -------------i---Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG----lG~-----vy~Kq 502 (638)
T KOG1126|consen 448 -------------I---QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG----LGT-----VYLKQ 502 (638)
T ss_pred -------------h---ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh----hhh-----heecc
Confidence 1 3566 67888888888888889999999999988888877776432 111 78899
Q ss_pred CCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHH
Q 035847 241 GDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319 (523)
Q Consensus 241 g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~l 319 (523)
++++.|+-.|+...+ +.| |.+....+...+-+.|+.|+|.++++......- .|..+-=-.
T Consensus 503 ek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-----------------kn~l~~~~~ 563 (638)
T KOG1126|consen 503 EKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-----------------KNPLCKYHR 563 (638)
T ss_pred chhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-----------------CCchhHHHH
Confidence 999999999998876 445 456666677778889999999999999876432 233333334
Q ss_pred HHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCC
Q 035847 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKK-MPFEP 381 (523)
Q Consensus 320 i~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p 381 (523)
+..+...++. ++|+..|+++++ +.|+ ...|..+...|-+.|+.+.|+.-|.- |.++|
T Consensus 564 ~~il~~~~~~--~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRY--VEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcch--HHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 5556667788 999999999975 4677 57788888999999999999866544 34444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.5e-06 Score=85.08 Aligned_cols=276 Identities=10% Similarity=0.017 Sum_probs=184.6
Q ss_pred chHHHHHHHHH--hcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCce--eHhHHH
Q 035847 71 FSWTSMMGMYN--VLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNAC--VKRPVL 137 (523)
Q Consensus 71 ~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li 137 (523)
..+..+..|.. ..|+++.|.+.+.+..+.. ...+....|+.+.+.+.+....+. .|+.. +.-...
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a 160 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHH
Confidence 34555666654 3699999999998776653 344556779999999999998765 35543 344457
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---C
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK---H 214 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~---~ 214 (523)
..+...|+++.|...++. +.. .-+-+..+...+...|...|++++|.+++..+.+. +
T Consensus 161 ~l~l~~~~~~~Al~~l~~-------------------l~~-~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 161 RILLAQNELHAARHGVDK-------------------LLE-MAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHHHHCCCHHHHHHHHHH-------------------HHH-hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 888889999999999998 555 22335678889999999999999999999988753 2
Q ss_pred hhhHHHH-HHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC---CCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 215 LVSWNAM-LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM---QPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 215 ~~t~~~l-i~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
...+..+ ..++. +....+..+++.+.+..+.+... +.+...+..+...+...|+.+.|.++++...+
T Consensus 221 ~~~~~~l~~~a~~---------~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 221 DEEFADLEQKAEI---------GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 2223111 11110 22223333344455555554321 23778888888999999999999999999887
Q ss_pred hcCCchHHHHhHHHhhhCCCCCcchH-HHHHHHH--HhcCCCchHHHHHHHHHhHHhcCCccCHh---HHHHHHHHHHhh
Q 035847 291 HHIQLSTGVGIALISIQGLGTGSFVW-NSLIDMY--GRCGAIQKNEGWRYFEMMKKEYNMEPAME---QYCCMVDLLARA 364 (523)
Q Consensus 291 ~g~~~~~~~~~~li~~y~~~p~~~~~-n~li~~~--~~~g~~~~~~a~~~~~~m~~~~g~~p~~~---ty~~li~~~~~~ 364 (523)
.. ||...- -.++..+ ...++. +.+.+.++...+. .|+.. ...++-..+.+.
T Consensus 292 ~~------------------pd~~~~~~~~l~~~~~l~~~~~--~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 292 KL------------------GDDRAISLPLCLPIPRLKPEDN--EKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred hC------------------CCcccchhHHHHHhhhcCCCCh--HHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHc
Confidence 53 222210 0122322 334566 7888888887765 45544 455788889999
Q ss_pred CCHHHHHHHHHh---CCCCCCCC----------CCCCHHHHHHHHHHHH
Q 035847 365 GQFDDTLNFMKK---MPFEPSSA----------EPCNPDIAEHAARHLF 400 (523)
Q Consensus 365 g~~~~A~~~~~~---m~~~p~~~----------~~~~~~~~~~~~~~l~ 400 (523)
|++++|.+.|+. ....|+.. ..|+.+.|....++.+
T Consensus 349 ~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999993 44566655 4455555555554443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.4e-06 Score=78.87 Aligned_cols=262 Identities=11% Similarity=0.111 Sum_probs=198.3
Q ss_pred HHHHHHHHh--cCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHh
Q 035847 74 TSMMGMYNV--LGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK 142 (523)
Q Consensus 74 ~~li~~~~~--~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 142 (523)
..+..|..+ .|++..|.++..+-.+.+ ..++.-..||.+.+-+...+..+.--.++..++-+.......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 345566654 599999999998766555 455666789999999999998876446677788888888889
Q ss_pred cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh-------
Q 035847 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL------- 215 (523)
Q Consensus 143 ~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~------- 215 (523)
.|+.+.|..-.++ ... .-..+..+.......|.+.|++.....+...|.+..+
T Consensus 166 ~~d~~aA~~~v~~-------------------ll~-~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 166 RRDYPAARENVDQ-------------------LLE-MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred CCCchhHHHHHHH-------------------HHH-hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 9999999888877 433 2344677889999999999999999999999986433
Q ss_pred ----hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 216 ----VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 216 ----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
.+|+.++. -....+..+.-...+++... ..+-+...-.+++.-+.+.|+.++|.++..+..++
T Consensus 226 ~le~~a~~glL~------------q~~~~~~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~ 292 (400)
T COG3071 226 RLEQQAWEGLLQ------------QARDDNGSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR 292 (400)
T ss_pred HHHHHHHHHHHH------------HHhccccchHHHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 37898888 44444444443445555443 24556666677777888899999999999999998
Q ss_pred cCCchHHHHhHHHhhh----------------C-CCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHH
Q 035847 292 HIQLSTGVGIALISIQ----------------G-LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354 (523)
Q Consensus 292 g~~~~~~~~~~li~~y----------------~-~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty 354 (523)
+.++.... ++... . ..-+.-.+.+|=.-|.+++.+ .+|..+|+.-.+ ..|+..+|
T Consensus 293 ~~D~~L~~---~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w--~kA~~~leaAl~---~~~s~~~~ 364 (400)
T COG3071 293 QWDPRLCR---LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW--GKASEALEAALK---LRPSASDY 364 (400)
T ss_pred ccChhHHH---HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH--HHHHHHHHHHHh---cCCChhhH
Confidence 88887222 22222 1 122335677777888899999 999999997664 58999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHh
Q 035847 355 CCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~ 376 (523)
+-+-+++.+.|+..+|.++.++
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHH
Confidence 9999999999999999999877
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-05 Score=77.38 Aligned_cols=353 Identities=11% Similarity=0.031 Sum_probs=212.7
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc---------------------ccc
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK---------------------DFS 159 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~---------------------~~~ 159 (523)
+..|+++...++.|+.+++...+. ++.|..+|-+--..=-..|+.+...++.+++ +|.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 778888888889999999888776 6778888888777778889999888888882 555
Q ss_pred ccCchhhHhhHhhhhhhcCCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHH-----------
Q 035847 160 NLSLLKHGKEIHPHHLKKDDLESD--LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLA----------- 223 (523)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~d--~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~----------- 223 (523)
..|..-....|...++.- |++.. -.||+.--+.|.+.+.++-|+.||....+ .+...|.-...
T Consensus 491 ~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 555555555555555544 44332 33566666666666666666666655432 12233333332
Q ss_pred ------hhhhcCCccc-----cchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 224 ------GYALGGFREE-----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 224 ------~~~~~g~~~~-----i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
+...+...+. .+.+..+|++..|..++....+..-. +...|-..+..-.....++.|+.++.....
T Consensus 570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~-- 646 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS-- 646 (913)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--
Confidence 0000000000 11444556666666666555553221 344555555555556666666666655543
Q ss_pred CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHH
Q 035847 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTL 371 (523)
Q Consensus 293 ~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~ 371 (523)
..|+...|.--+..---.+.. ++|.+++++..+. -|+ ...|-.+-..+-+.++++.|.
T Consensus 647 ----------------~sgTeRv~mKs~~~er~ld~~--eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 647 ----------------ISGTERVWMKSANLERYLDNV--EEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred ----------------cCCcchhhHHHhHHHHHhhhH--HHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 234556666555556666777 8888888887765 355 345666666777788888887
Q ss_pred HHHHh-CCCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHHHHHHHHHH
Q 035847 372 NFMKK-MPFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439 (523)
Q Consensus 372 ~~~~~-m~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 439 (523)
+-+.. ...-|++. +.+++-.|+...++..--+|++...|-.-|.-..++|..+.+-..+.+-+++-
T Consensus 706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-- 783 (913)
T KOG0495|consen 706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC-- 783 (913)
T ss_pred HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 77554 45566666 66778888888888887888888777666666666777766643332222222
Q ss_pred cCCcCCchhhhhhHHH-HHHHccccCCCCCcEEEEecccccCCCchhhHhHhhh
Q 035847 440 IGYMKRIPACGHSEKL-ALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492 (523)
Q Consensus 440 ~g~~pd~~~~~~~~~l-a~a~~l~~~~~~~~~~i~~nl~~~~d~h~~~~~~s~~ 492 (523)
|+ |+.| +.+.-+.+.+...+ +-++-|+.|..=|-.+--|.++
T Consensus 784 ----p~------sg~LWaEaI~le~~~~rkT-ks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 784 ----PS------SGLLWAEAIWLEPRPQRKT-KSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred ----Cc------cchhHHHHHHhccCcccch-HHHHHHHhccCCchhHHHHHHH
Confidence 22 2222 34454555555544 5677899995444333334444
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-07 Score=96.44 Aligned_cols=250 Identities=12% Similarity=0.079 Sum_probs=150.0
Q ss_pred HHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHH
Q 035847 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYA 195 (523)
Q Consensus 116 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~ 195 (523)
.++..+...|+.|+.+||.++|.-||..|+.+.|- +|.- |+...+..+..+++.++.+..
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~f-------------------m~~ksLpv~e~vf~~lv~sh~ 70 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPF-------------------MEIKSLPVREGVFRGLVASHK 70 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhh-------------------hhcccccccchhHHHHHhccc
Confidence 56777888899999999999999999999999998 8887 776567778889999999999
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH-HHh-------cCCCCCHHHHHH
Q 035847 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR-MIQ-------TDMQPNTISLSG 267 (523)
Q Consensus 196 k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~-M~~-------~g~~p~~~t~~~ 267 (523)
..++.+.+. +|...||+.|+. +|.++|+... ++..++ |.. .|+.--..-|-.
T Consensus 71 ~And~Enpk-------ep~aDtyt~Ll~------------ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~ 130 (1088)
T KOG4318|consen 71 EANDAENPK-------EPLADTYTNLLK------------AYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLM 130 (1088)
T ss_pred ccccccCCC-------CCchhHHHHHHH------------HHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHh
Confidence 999988776 788889999999 7777877654 222222 211 222212222222
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHH---HHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNS---LIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 268 ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~---li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
.+. |+..-..+....+...+.+ | .|-.++......|-..-++. +|.-+.... ....++.+..+.-
T Consensus 131 k~~-c~p~~lpda~n~illlv~e-g------lwaqllkll~~~Pvsa~~~p~~vfLrqnv~~n----tpvekLl~~cksl 198 (1088)
T KOG4318|consen 131 KIH-CCPHSLPDAENAILLLVLE-G------LWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDN----TPVEKLLNMCKSL 198 (1088)
T ss_pred hcc-cCcccchhHHHHHHHHHHH-H------HHHHHHHHHhhCCcccccchHHHHHHHhccCC----chHHHHHHHHHHh
Confidence 222 2221111111111111111 0 01111111101121111111 122222222 3344555544433
Q ss_pred cCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHH
Q 035847 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVH 424 (523)
Q Consensus 345 ~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
.+ .|++.+|..+++.-.-+|+++.|..++.+|.- +.| |-+.--+|.++.|....+
T Consensus 199 ~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke------------------~gf---pir~HyFwpLl~g~~~~q--- 253 (1088)
T KOG4318|consen 199 VE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKE------------------KGF---PIRAHYFWPLLLGINAAQ--- 253 (1088)
T ss_pred hc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH------------------cCC---CcccccchhhhhcCccch---
Confidence 23 69999999999999999999999999999931 111 222224455555522222
Q ss_pred HHHHHHHHHHHHHHHcCCcCCc
Q 035847 425 KISEKLMRLYSEIKKIGYMKRI 446 (523)
Q Consensus 425 ~~~~~l~~l~~~m~~~g~~pd~ 446 (523)
.++.+.+.|++.|+.||.
T Consensus 254 ----~~e~vlrgmqe~gv~p~s 271 (1088)
T KOG4318|consen 254 ----VFEFVLRGMQEKGVQPGS 271 (1088)
T ss_pred ----HHHHHHHHHHHhcCCCCc
Confidence 235677899999999997
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-05 Score=82.86 Aligned_cols=306 Identities=13% Similarity=0.180 Sum_probs=212.4
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------H
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------V 101 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------l 101 (523)
.+++ |+++.|..++.++++.. ..+...|-+|-..|-+.|+.++++..+-..-... +
T Consensus 149 lfar-g~~eeA~~i~~EvIkqd--------------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQD--------------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhC--------------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3444 99999999999999875 3577899999999999999999988774332211 5
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC
Q 035847 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 181 (523)
-....+.|.+..|.-.|.+.++.. +++...+--=+..|-+.|+...|..-|.+ +-.....
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~-------------------l~~~~p~ 273 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQ-------------------LLQLDPP 273 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHH-------------------HHhhCCc
Confidence 555667788999999999998874 44544444567788999999999999988 3220111
Q ss_pred CchhHHH----HHHHHHHhcCChHHHHHHHhcCCC-----CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 182 SDLLVNN----SLMDFYAKCRYLKVAHCKFSKIKQ-----KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 182 ~d~~~~~----~li~~~~k~g~~~~A~~vf~~m~~-----~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
.|..-.- -.++.|...++-+.|.+.++.-.. -+...+|.++. .|.+...++.|......
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ae------------l~l~~~q~d~~~~~i~~ 341 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAE------------LFLKNKQSDKALMKIVD 341 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHH------------HHHHhHHHHHhhHHHHH
Confidence 1222222 235556667777888877776542 23346777777 77788889999998888
Q ss_pred HHhcCCCCCHHHH----------------------H----HHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhh
Q 035847 253 MIQTDMQPNTISL----------------------S----GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306 (523)
Q Consensus 253 M~~~g~~p~~~t~----------------------~----~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 306 (523)
+......||..-+ . -+.-+..+....+....+...+.+..+.++.
T Consensus 342 ~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d--------- 412 (895)
T KOG2076|consen 342 DRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSD--------- 412 (895)
T ss_pred HhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhh---------
Confidence 8773222222222 1 2233455666667777777777776655543
Q ss_pred hCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-
Q 035847 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA- 384 (523)
Q Consensus 307 y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 384 (523)
+.-.|.-+.++|...|+. .+|+.+|...... -.--+...|--+-.+|-..|..++|.+.+++. ...|+..
T Consensus 413 -----~~dL~~d~a~al~~~~~~--~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D 484 (895)
T KOG2076|consen 413 -----DVDLYLDLADALTNIGKY--KEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD 484 (895)
T ss_pred -----hHHHHHHHHHHHHhcccH--HHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh
Confidence 556677788888888988 8899988888875 22333667778888888888889988888874 4566665
Q ss_pred ----------CCCCHHHHHHHHHHHH
Q 035847 385 ----------EPCNPDIAEHAARHLF 400 (523)
Q Consensus 385 ----------~~~~~~~~~~~~~~l~ 400 (523)
..|+.+.|..+.+.++
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 6777776666666555
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.2e-06 Score=83.71 Aligned_cols=242 Identities=16% Similarity=0.154 Sum_probs=166.2
Q ss_pred ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC--CCCCchhHH
Q 035847 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD--DLESDLLVN 187 (523)
Q Consensus 110 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~d~~~~ 187 (523)
..++|...|...... ..-+..+..-+-.+|...++++.|.++|+. ++.. -..-+..+|
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~-------------------~r~~~p~rv~~meiy 393 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSL-------------------VRRIEPYRVKGMEIY 393 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhhccccccchhHH
Confidence 567788888884443 222335666778899999999999999998 4431 123367888
Q ss_pred HHHHHHHHhcCChH-HHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHH
Q 035847 188 NSLMDFYAKCRYLK-VAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISL 265 (523)
Q Consensus 188 ~~li~~~~k~g~~~-~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~ 265 (523)
.+.+.-+-+.=.+. -|..+.+.++ -...||-++-. .|.-.++.+.|++.|++-.+ +.| ..++|
T Consensus 394 ST~LWHLq~~v~Ls~Laq~Li~~~~-~sPesWca~GN------------cfSLQkdh~~Aik~f~RAiQ--ldp~faYay 458 (638)
T KOG1126|consen 394 STTLWHLQDEVALSYLAQDLIDTDP-NSPESWCALGN------------CFSLQKDHDTAIKCFKRAIQ--LDPRFAYAY 458 (638)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhCC-CCcHHHHHhcc------------hhhhhhHHHHHHHHHHHhhc--cCCccchhh
Confidence 88887654433332 2444444433 24468999988 88889999999999999877 456 56777
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc
Q 035847 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345 (523)
Q Consensus 266 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~ 345 (523)
+.+-.-+.....+|.|...|...+. .|+..||+ |--|--.|.+.++. +.|+-.|+...
T Consensus 459 TLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnA-------------wYGlG~vy~Kqek~--e~Ae~~fqkA~--- 516 (638)
T KOG1126|consen 459 TLLGHESIATEEFDKAMKSFRKALG----VDPRHYNA-------------WYGLGTVYLKQEKL--EFAEFHFQKAV--- 516 (638)
T ss_pred hhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHH-------------HHhhhhheeccchh--hHHHHHHHhhh---
Confidence 7765556667778888888776653 22222222 33455678899999 99999888775
Q ss_pred CCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 346 NMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 346 g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
.+.|. .+..+++...+-+.|+.|+|++++++- .++|..+ ..++.+.|....|++.++-|+++.
T Consensus 517 ~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~ 592 (638)
T KOG1126|consen 517 EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESS 592 (638)
T ss_pred cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHH
Confidence 46676 566777778888999999999999884 3455544 345555566666666666666553
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.7e-06 Score=87.11 Aligned_cols=208 Identities=10% Similarity=-0.059 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHH
Q 035847 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNS 189 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~ 189 (523)
.++|.+.+++.++.. +-+..++..+-..+...|++++|...|++ .-. ..| +...+..
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~-------------------Al~--l~P~~~~a~~~ 377 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQ-------------------ANL--LSPISADIKYY 377 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHH-------------------HHH--hCCCCHHHHHH
Confidence 344444444444332 33566777777788888999999999988 222 234 3557777
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--CChh-hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHH
Q 035847 190 LMDFYAKCRYLKVAHCKFSKIKQ--KHLV-SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISL 265 (523)
Q Consensus 190 li~~~~k~g~~~~A~~vf~~m~~--~~~~-t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~ 265 (523)
+-..|...|+.++|...++...+ |+.. .+..+.. .+...|++++|+..+++..... .|+ ...+
T Consensus 378 lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~------------~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~ 444 (553)
T PRK12370 378 YGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW------------ITYYHTGIDDAIRLGDELRSQH-LQDNPILL 444 (553)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH------------HHHhccCHHHHHHHHHHHHHhc-cccCHHHH
Confidence 88888889999999999988753 5432 2333344 4556788899999998877543 343 3345
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc
Q 035847 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345 (523)
Q Consensus 266 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~ 345 (523)
..+-.++...|+.++|.+.+..+.... | .+...++.+-..|+..| ++|...++.+.+..
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~~--~---------------~~~~~~~~l~~~~~~~g----~~a~~~l~~ll~~~ 503 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQE--I---------------TGLIAVNLLYAEYCQNS----ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhcc--c---------------hhHHHHHHHHHHHhccH----HHHHHHHHHHHHHh
Confidence 556666778899999999887765421 1 12234555556666666 56777777776654
Q ss_pred CCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 346 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.-.|....+..++. .-.|+-+.+..+ +++
T Consensus 504 ~~~~~~~~~~~~~~--~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 504 QRIDNNPGLLPLVL--VAHGEAIAEKMW-NKF 532 (553)
T ss_pred hHhhcCchHHHHHH--HHHhhhHHHHHH-HHh
Confidence 55555444444443 344555555555 555
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.6e-05 Score=71.77 Aligned_cols=250 Identities=14% Similarity=0.158 Sum_probs=155.0
Q ss_pred cCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCce------eHhHHHHHHHhcCCHH
Q 035847 83 LGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNAC------VKRPVLDMFIKCGRME 147 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~ 147 (523)
+.+.++|.++|-+|.+.. +-+.+.+.|.++.|.++|.-+.++ ||.. +.-.|-.-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 488999999999999876 667777888888888888877743 4422 2334556677788888
Q ss_pred HHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHh-hh
Q 035847 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG-YA 226 (523)
Q Consensus 148 ~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~-~~ 226 (523)
.|..+|.. +.. --+.-....--|+..|-+..++++|.++-+++.+-+--+|+.-|.- ||
T Consensus 125 RAE~~f~~-------------------L~d-e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 125 RAEDIFNQ-------------------LVD-EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHH-------------------Hhc-chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 88888877 333 1122233455678888888888888887776665444455554431 22
Q ss_pred hcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHH-HHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV-LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 227 ~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
.... .+....+.+.|..++.+-.+.. |+.+--+++ -+.....|+.+.|.+.++.+.+.+..--
T Consensus 185 ELAq-----~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl--------- 248 (389)
T COG2956 185 ELAQ-----QALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL--------- 248 (389)
T ss_pred HHHH-----HHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH---------
Confidence 1110 3334567788888888777643 444333333 3455667888888888887777543221
Q ss_pred hhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHH-hCCCCCCC
Q 035847 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK-KMPFEPSS 383 (523)
Q Consensus 306 ~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~-~m~~~p~~ 383 (523)
..+-..|..+|.+.|+. +++..++.++.+. .|....-..|-+.-....-.+.|...+. ...-+|+.
T Consensus 249 -------~evl~~L~~~Y~~lg~~--~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 249 -------SEVLEMLYECYAQLGKP--AEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred -------HHHHHHHHHHHHHhCCH--HHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence 12346677888888888 8888888777654 3343333444443333333444544433 34444543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00012 Score=70.44 Aligned_cols=225 Identities=11% Similarity=-0.009 Sum_probs=135.7
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCc-------ee
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNA-------CV 132 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~ 132 (523)
+...+-+.-......|+++.|..-..+..+.+ ...+|.+.|++.....+...+.+.|.-.|. .+
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a 231 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA 231 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 33344444444445555555555444444433 444445555555555555555555433322 13
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
|+.+++=....+..+.-...+++ ... ...-++.+-.+++.-+.++|+.++|.++..+..+
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~-------------------~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKN-------------------QPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHh-------------------ccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44444444333333333333333 222 3444566677888888999999999888766543
Q ss_pred --CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-cCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 035847 213 --KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 213 --~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~ 289 (523)
.|.. +..+. ...+-++.+.=++..+.-.. .+..| -.+.+|-.-|.+.+.+.+|...++...
T Consensus 292 ~~~D~~-----L~~~~---------~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 292 RQWDPR-----LCRLI---------PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred hccChh-----HHHHH---------hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2322 22122 55666777766666665443 44444 566667777888999999999988766
Q ss_pred HhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC
Q 035847 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350 (523)
Q Consensus 290 ~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~ 350 (523)
+. .|+..+|+-+-++|.+.|+. ++|.+++++-... -.+|+
T Consensus 356 ~~------------------~~s~~~~~~la~~~~~~g~~--~~A~~~r~e~L~~-~~~~~ 395 (400)
T COG3071 356 KL------------------RPSASDYAELADALDQLGEP--EEAEQVRREALLL-TRQPN 395 (400)
T ss_pred hc------------------CCChhhHHHHHHHHHHcCCh--HHHHHHHHHHHHH-hcCCC
Confidence 53 57889999999999999999 9999998876644 34444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00012 Score=77.68 Aligned_cols=218 Identities=18% Similarity=0.162 Sum_probs=140.6
Q ss_pred hhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChhhHHHHHHhhhhcCCccccchhhc
Q 035847 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----KHLVSWNAMLAGYALGGFREEITGFTQ 239 (523)
Q Consensus 165 ~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----~~~~t~~~li~~~~~~g~~~~i~~~~~ 239 (523)
.++...+...+.. ...++.+++-+-+.|.+...+..|..-|..+.+ +|..+--+|-.-|.+.-....=..-..
T Consensus 547 ~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 547 YEASLLLKDALNI--DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred HHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 3333333334433 334445555566678888888778775554432 344333222221111000000001113
Q ss_pred cCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHH
Q 035847 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319 (523)
Q Consensus 240 ~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~l 319 (523)
.+..++|+.+|....+.. +-|.+.-|.+--.++..|++..|..||.++.+... .+..+|-.+
T Consensus 625 kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----------------~~~dv~lNl 686 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----------------DFEDVWLNL 686 (1018)
T ss_pred HHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----------------hCCceeeeH
Confidence 456788999999887753 23777777777788999999999999999998653 134578889
Q ss_pred HHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCCCC-CCCCH-HHHHHHH
Q 035847 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSSA-EPCNP-DIAEHAA 396 (523)
Q Consensus 320 i~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~-~~~~~-~~~~~~~ 396 (523)
-.+|...|++ ..|+++|+...+.+.-.-+.....+|-+++-+.|.+.+|.+.... +...|..+ ..-|+ ....+.+
T Consensus 687 ah~~~e~~qy--~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 687 AHCYVEQGQY--RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 9999999999 999999999888878777788999999999999999999998655 44444443 22222 2233445
Q ss_pred HHHHhhCC
Q 035847 397 RHLFELEP 404 (523)
Q Consensus 397 ~~l~~~~~ 404 (523)
+.++...+
T Consensus 765 ~s~lr~~k 772 (1018)
T KOG2002|consen 765 ESILRLEK 772 (1018)
T ss_pred HHHHhccc
Confidence 55555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00029 Score=69.10 Aligned_cols=362 Identities=13% Similarity=0.097 Sum_probs=203.6
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH-----------------HhcC-
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-----------------MFEK- 64 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~f~~- 64 (523)
+..|..+|++-+.-. ..+...|-.-+..=-+.+.+..|+.+++..+..-...|.+.+ +|++
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 357888888776543 335555666666666788889999999988876655555544 5553
Q ss_pred CC-CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhc
Q 035847 65 MP-ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143 (523)
Q Consensus 65 ~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 143 (523)
|. +|+...|++.|+--.+-..++.|.++|++..-. .|++..|--....=.++
T Consensus 168 ~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~---------------------------HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 168 MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV---------------------------HPKVSNWIKYARFEEKH 220 (677)
T ss_pred HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---------------------------cccHHHHHHHHHHHHhc
Confidence 22 688888888888888888888888888776532 34444444444444445
Q ss_pred CCHHHHHHHhhhc---------------cccc----cCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHH
Q 035847 144 GRMEMASGEFEEK---------------DFSN----LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAH 204 (523)
Q Consensus 144 g~~~~A~~~f~~~---------------~~~~----~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~ 204 (523)
|.+..|..+|+.| +++. ....+.++-++...+..-.-......|......=-+-|+.....
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 5555555554442 1111 12233344444444544111112556666666666667755554
Q ss_pred HHHh--------cCCCC---ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH-------HHHH
Q 035847 205 CKFS--------KIKQK---HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT-------ISLS 266 (523)
Q Consensus 205 ~vf~--------~m~~~---~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~-------~t~~ 266 (523)
.+.- .+.+. |-.||--.+. .--..|+.+...++|++.... ++|-. +.|.
T Consensus 301 d~Iv~KRk~qYE~~v~~np~nYDsWfdylr------------L~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPYNYDSWFDYLR------------LEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYL 367 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCCCchHHHHHHH------------HHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHH
Confidence 4332 22222 3346666666 555779999999999998764 66622 2332
Q ss_pred HHHHHh---hccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHH----hcCCCchHHHHHHHH
Q 035847 267 GVLAAC---AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYG----RCGAIQKNEGWRYFE 339 (523)
Q Consensus 267 ~ll~a~---~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~----~~g~~~~~~a~~~~~ 339 (523)
-+=-+| ....+++.+++++...++ =++. ..+||.-+=-.|+ ++.++ ..|.+++.
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~-lIPH----------------kkFtFaKiWlmyA~feIRq~~l--~~ARkiLG 428 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLD-LIPH----------------KKFTFAKIWLMYAQFEIRQLNL--TGARKILG 428 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc----------------ccchHHHHHHHHHHHHHHHccc--HHHHHHHH
Confidence 222222 235778888888888777 2333 3344444333333 33445 55666555
Q ss_pred HhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCC
Q 035847 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSSA-----------EPCNPDIAEHAARHLFELEPLSS 407 (523)
Q Consensus 340 ~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~ 407 (523)
... |..|...+|...|..=.+.+.+|....++++ +.+.|... .-|+.+.++-+++..++...-+.
T Consensus 429 ~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 429 NAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred HHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 443 5566666666666666666666666666665 34555544 44555555444333332211111
Q ss_pred --cceeEEEecCCCCchHHHHH
Q 035847 408 --GKVHSFIAGDTSHSLVHKIS 427 (523)
Q Consensus 408 --~~~~~~~~~~~~~~~~~~~~ 427 (523)
..|.++|.-....+..+.+.
T Consensus 506 pellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 506 PELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHHHHHHhhhhhhhcchHHHHH
Confidence 14445555445555555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-05 Score=80.46 Aligned_cols=256 Identities=15% Similarity=0.138 Sum_probs=160.2
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcch-HHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFS-WTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
..++..|-..|...|+++.|.+++.+..+.-.. .+ .+..|.+.+ -+.+-..|...+++.+|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k------~~-G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~-- 269 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEK------TS-GLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT-- 269 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH------cc-CccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--
Confidence 356777889999999999999999988765000 00 011233322 23455677788999999999887654
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+.+...-...+--..+++.|-..|.+.|++++|...++. |..|.....-. .
T Consensus 270 ----------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~-----------Al~I~~~~~~~--~ 320 (508)
T KOG1840|consen 270 ----------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER-----------ALEIYEKLLGA--S 320 (508)
T ss_pred ----------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH-----------HHHHHHHhhcc--C
Confidence 222211010111234566677789999999999999988 44444442211 2
Q ss_pred CCchh-HHHHHHHHHHhcCChHHHHHHHhcCC-------CCCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHH
Q 035847 181 ESDLL-VNNSLMDFYAKCRYLKVAHCKFSKIK-------QKHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALE 248 (523)
Q Consensus 181 ~~d~~-~~~~li~~~~k~g~~~~A~~vf~~m~-------~~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~ 248 (523)
.|++. .++.+...|+..+.+++|..+++... .++. -+++.|-. .|-+.|++.+|.+
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~------------l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAE------------LYLKMGKYKEAEE 388 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH------------HHHHhcchhHHHH
Confidence 33333 45667777888899999988887542 2222 36888888 8889999999999
Q ss_pred HHHHHHhc----CC--CCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHH
Q 035847 249 FFSRMIQT----DM--QPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321 (523)
Q Consensus 249 lf~~M~~~----g~--~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~ 321 (523)
+|++..+. +- .+. ...++-|-.+|.+.+..+.|.++|.+
T Consensus 389 ~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~---------------------------------- 434 (508)
T KOG1840|consen 389 LYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE---------------------------------- 434 (508)
T ss_pred HHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH----------------------------------
Confidence 99987652 11 121 23344455555555555555555422
Q ss_pred HHHhcCCCchHHHHHHHHHhHHhcC-CccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 322 MYGRCGAIQKNEGWRYFEMMKKEYN-MEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 322 ~~~~~g~~~~~~a~~~~~~m~~~~g-~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+..+. +..| -.|+ ..+|..|...|.+.|++++|.++.+..
T Consensus 435 ------------~~~i~----~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 435 ------------AKDIM----KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred ------------HHHHH----HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 22222 1112 1233 467888888888888888888876553
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-05 Score=83.17 Aligned_cols=234 Identities=11% Similarity=-0.021 Sum_probs=145.1
Q ss_pred hhHHHHHHHHhhhCCCCCCcc-hHHHHHHhcc---------CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcch
Q 035847 3 IKNVTLLLQSMDLTNPDECTV-TYALIFQRCP---------KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFS 72 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~ 72 (523)
+++|+.+|++-.+. .|+.. .|..+-.++. ..++++.|...++...+.. ..+...
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--------------P~~~~a 340 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--------------HNNPQA 340 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--------------CCCHHH
Confidence 46788888877654 45443 3433322221 3345788888888887654 236778
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCc-eeHhHHHHHHHh
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNA-CVKRPVLDMFIK 142 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~ 142 (523)
|..+-..+...|++++|...|++..+.+ +-..+...|+.++|.+.++..++. .|+. ..+..+...+..
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~ 418 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHh
Confidence 8888888889999999999999987765 455566778888888888887765 3432 233344445666
Q ss_pred cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hhhH
Q 035847 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH-LVSW 218 (523)
Q Consensus 143 ~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~-~~t~ 218 (523)
.|++++|...+++ ... ...| +...+..+-..|...|+.++|...++++.. |+ ...+
T Consensus 419 ~g~~eeA~~~~~~-------------------~l~-~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~ 478 (553)
T PRK12370 419 HTGIDDAIRLGDE-------------------LRS-QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAV 478 (553)
T ss_pred ccCHHHHHHHHHH-------------------HHH-hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHH
Confidence 7888888888777 322 1223 344466667777788888888888877653 22 2334
Q ss_pred HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-cCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 219 ~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
+.+-. .|+..| ++|...++.+.+ ....|....+..++.+ -.|+-+.+... ..+.+.
T Consensus 479 ~~l~~------------~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 479 NLLYA------------EYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLV--AHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHH------------HHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHH--HHhhhHHHHHH-HHhhcc
Confidence 44544 555556 467776666654 2233433333333333 23444444443 555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00028 Score=69.08 Aligned_cols=181 Identities=13% Similarity=0.177 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 186 ~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
|...+-+-|+-.++.++|...|++..+ .-...|+.|-. -|....+...|++-++....-. +.|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGH------------EyvEmKNt~AAi~sYRrAvdi~-p~Dy 398 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGH------------EYVEMKNTHAAIESYRRAVDIN-PRDY 398 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhH------------HHHHhcccHHHHHHHHHHHhcC-chhH
Confidence 444555667777788888888887654 34457887777 7888888888888888877642 2366
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhH
Q 035847 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342 (523)
Q Consensus 263 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~ 342 (523)
..|-.|-++|.-.+...-|.-.++...+. . +.|...|.+|=.+|.+.++. ++|.+.|.+..
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~--k---------------PnDsRlw~aLG~CY~kl~~~--~eAiKCykrai 459 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALEL--K---------------PNDSRLWVALGECYEKLNRL--EEAIKCYKRAI 459 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhc--C---------------CCchHHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 77888888888888887777777777652 1 34788999999999999999 99999999888
Q ss_pred HhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC--------CCCCCC-----------CCCCHHHHHHHHHHHH
Q 035847 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP--------FEPSSA-----------EPCNPDIAEHAARHLF 400 (523)
Q Consensus 343 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~--------~~p~~~-----------~~~~~~~~~~~~~~l~ 400 (523)
.- | ..+...|..|-+++-+.++.++|.+.+++-- ..|... ++++.+.|...+..+.
T Consensus 460 ~~-~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 460 LL-G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hc-c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 64 3 4467889999999999999999999877631 222222 6667777666555544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00022 Score=69.34 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=100.1
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Q 035847 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275 (523)
Q Consensus 196 k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 275 (523)
..|++++|.+.+.+....|...-.+|.. .|- .+-..|++++|++.|-.+..- +.-+.....-+.+-|-..
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn----igl-----t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN----IGL-----TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELL 571 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH----hcc-----cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHh
Confidence 3577777777777666555543333222 111 334556777777777665431 122334444455555555
Q ss_pred CChhHHHHHHHHHHHhcCCchHHHHhHHHhhh-----------------CC-CCCcchHHHHHHHHHhcCCCchHHHHHH
Q 035847 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ-----------------GL-GTGSFVWNSLIDMYGRCGAIQKNEGWRY 337 (523)
Q Consensus 276 g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y-----------------~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~ 337 (523)
.+...|.+++.+... -++.|+.+.+-|-+.| .. +-|+.+..-|-.-|....-+ +++..+
T Consensus 572 ed~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~--ekai~y 648 (840)
T KOG2003|consen 572 EDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFS--EKAINY 648 (840)
T ss_pred hCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHH--HHHHHH
Confidence 666666665544332 3445566666666666 22 44555655566666666666 888888
Q ss_pred HHHhHHhcCCccCHhHHHHHHHHH-HhhCCHHHHHHHHHhC
Q 035847 338 FEMMKKEYNMEPAMEQYCCMVDLL-ARAGQFDDTLNFMKKM 377 (523)
Q Consensus 338 ~~~m~~~~g~~p~~~ty~~li~~~-~~~g~~~~A~~~~~~m 377 (523)
|+... -++|+..-|..||..| .|.|++.+|+++++..
T Consensus 649 ~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 649 FEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 88664 4688888888887755 4688888888887765
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00015 Score=73.60 Aligned_cols=76 Identities=9% Similarity=0.030 Sum_probs=45.7
Q ss_pred HHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHH
Q 035847 11 QSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIV 90 (523)
Q Consensus 11 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 90 (523)
.++...|+..|...|-.=...|-+.|..-.+..+...++.-|+.... --.||+.--..|.+.+.++-|.
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed-----------~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED-----------RKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch-----------hHhHHhhhHHHHHhcchHHHHH
Confidence 34556677777777777777777777777777777777766653211 1245555555555555555555
Q ss_pred HHHHHhh
Q 035847 91 NLFYLLI 97 (523)
Q Consensus 91 ~l~~~m~ 97 (523)
.+|....
T Consensus 537 AVya~al 543 (913)
T KOG0495|consen 537 AVYAHAL 543 (913)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0018 Score=68.95 Aligned_cols=336 Identities=13% Similarity=0.103 Sum_probs=179.3
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeH--
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVK-- 133 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-- 133 (523)
.|.+.-|.|-+-|.-.|+++.+..+...+...- +-+++-..|+++.|...|-...+. .||-+++
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 467777888888888888888888887665433 667777788888888888776654 4554444
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcC----ChHHHHHHHhc
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR----YLKVAHCKFSK 209 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g----~~~~A~~vf~~ 209 (523)
--|..+|.+.|+++.+...|+. +-. ..+-+..+...|-..|+..+ ..+.|..++..
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEk-------------------v~k-~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEK-------------------VLK-QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHH-------------------HHH-hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 4577888899999988888888 333 23334556666666666554 45666666665
Q ss_pred CCCCC---hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHH----HhcCCCCCHHHHHHHHHHhhccCChhHHH
Q 035847 210 IKQKH---LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM----IQTDMQPNTISLSGVLAACAQVKGFKLGK 282 (523)
Q Consensus 210 m~~~~---~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M----~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 282 (523)
..++. ...|-.+-. . ...+++..++.+|... ...+-.+.....|.+-.-....|.++.|.
T Consensus 406 ~~~~~~~d~~a~l~laq------------l-~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQ------------L-LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHhcccccHHHHHHHHH------------H-HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 55433 333333322 2 2233344444444332 23333355555565555555666666666
Q ss_pred HHHHHHHHh---cCCchHH-------HHhHH--Hhhh-CCCCCcch-------HHHHHHHHHhcC-------CCchHHHH
Q 035847 283 EIHGYVLRH---HIQLSTG-------VGIAL--ISIQ-GLGTGSFV-------WNSLIDMYGRCG-------AIQKNEGW 335 (523)
Q Consensus 283 ~i~~~~~~~---g~~~~~~-------~~~~l--i~~y-~~~p~~~~-------~n~li~~~~~~g-------~~~~~~a~ 335 (523)
..+...... -..+|.. -||.- .... ....-... +-.-|++|.+.| .. .+|.
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~--~ea~ 550 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNL--YEAS 550 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCc--HHHH
Confidence 665555443 1122221 11100 0000 00000000 112344554443 33 5666
Q ss_pred HHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHH----HHHhCCCCCCCC----------------------CCCCH
Q 035847 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN----FMKKMPFEPSSA----------------------EPCNP 389 (523)
Q Consensus 336 ~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~----~~~~m~~~p~~~----------------------~~~~~ 389 (523)
..++..... ..-+...++-+-+.+.+...+..|.+ ++.+....+|+. ..+..
T Consensus 551 ~~lk~~l~~--d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 551 LLLKDALNI--DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHhc--ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 666655542 22223333333344555555555554 222222223332 11223
Q ss_pred HHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHHHHHHHHHHcCC-cCCc
Q 035847 390 DIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY-MKRI 446 (523)
Q Consensus 390 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~-~pd~ 446 (523)
+.|...+.+++..+|.|...-|-.-.-++..|+..++. .+|...++.+- -||.
T Consensus 629 ~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~----dIFsqVrEa~~~~~dv 682 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEAR----DIFSQVREATSDFEDV 682 (1018)
T ss_pred HHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHH----HHHHHHHHHHhhCCce
Confidence 34445566677777777665555555566677777764 56666666665 4555
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00032 Score=73.94 Aligned_cols=316 Identities=13% Similarity=0.193 Sum_probs=223.8
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|.+++.+..+.. +-+...|-+|-..+-..|+.+++...+- +...+. ..|..-|-.+-.-..+
T Consensus 155 ~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~l--lAAHL~------------p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWL--LAAHLN------------PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHH--HHHhcC------------CCChHHHHHHHHHHHh
Confidence 578999999998864 3377889999999999999988766543 333332 3467889999999999
Q ss_pred cCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhH----HHHHHHhcCCHHHH
Q 035847 83 LGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP----VLDMFIKCGRMEMA 149 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~----li~~~~~~g~~~~A 149 (523)
.|.++.|.-.|.+..+.. -...|-+.|+...|.+-|.++.+..-+.|..-.-. .+..|...++-+.|
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999877654 56677889999999999999987642112222223 34556667777888
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCh----------
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ----KHL---------- 215 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~----~~~---------- 215 (523)
.+.++.+ ....+-..+...+|.++..|.+....+.|......+.. +|.
T Consensus 300 ~~~le~~------------------~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 300 AKALEGA------------------LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHH------------------HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 8888871 22113344556778888888888888888776655532 221
Q ss_pred ------------hhHHHHH-HhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC--CHHHHHHHHHHhhccCChhH
Q 035847 216 ------------VSWNAML-AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP--NTISLSGVLAACAQVKGFKL 280 (523)
Q Consensus 216 ------------~t~~~li-~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p--~~~t~~~ll~a~~~~g~~~~ 280 (523)
.+|+.=+ .- +-++......+...-+..-..+..+.| +.-.|.-+..++.+.|.+.+
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~rl---------~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~ 432 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVIRL---------MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKE 432 (895)
T ss_pred ccccccccCCCCCCccchhHhH---------hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHH
Confidence 2222111 10 003333333344444444455555434 55678889999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHH
Q 035847 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVD 359 (523)
Q Consensus 281 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~ 359 (523)
|..++..+..... .-+...|--+-.+|-..|.. ++|.+.|+..... .|+ ...-.+|-.
T Consensus 433 Al~~l~~i~~~~~----------------~~~~~vw~~~a~c~~~l~e~--e~A~e~y~kvl~~---~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 433 ALRLLSPITNREG----------------YQNAFVWYKLARCYMELGEY--EEAIEFYEKVLIL---APDNLDARITLAS 491 (895)
T ss_pred HHHHHHHHhcCcc----------------ccchhhhHHHHHHHHHHhhH--HHHHHHHHHHHhc---CCCchhhhhhHHH
Confidence 9999999987422 12467888899999999999 9999999988754 566 455566777
Q ss_pred HHHhhCCHHHHHHHHHhCCCCCC
Q 035847 360 LLARAGQFDDTLNFMKKMPFEPS 382 (523)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m~~~p~ 382 (523)
.+-+.|+.++|.+.++.|- .||
T Consensus 492 l~~~~g~~EkalEtL~~~~-~~D 513 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQII-NPD 513 (895)
T ss_pred HHHhcCCHHHHHHHHhccc-CCC
Confidence 8889999999999999974 555
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-05 Score=73.04 Aligned_cols=224 Identities=14% Similarity=0.080 Sum_probs=168.3
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+-+.|-+.|...+|+..+..-++. .|-+.||--|-+.|.+..+.+.|+.+|.+ --. .+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~-------------------gld-~f 286 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGE-------------------GLD-SF 286 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhh-------------------hhh-cC
Confidence 778888999999998888777665 46667788888999999999999999988 222 22
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
.-|+....-+-..+-..++.++|.++++...+ -++.+..++-. +|.-.++++-|++.|+++.+.|
T Consensus 287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~------------~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAV------------GYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeee------------ccccCCChHHHHHHHHHHHHhc
Confidence 33444444566677778899999999987654 34555555666 8888999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHH
Q 035847 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337 (523)
Q Consensus 258 ~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~ 337 (523)
+. +...|+.+--+|.-.+.+|.+..-|......--.|+. -...|-.+=......|+. .-|.+.
T Consensus 355 ~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~--------------aaDvWYNlg~vaV~iGD~--nlA~rc 417 (478)
T KOG1129|consen 355 AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ--------------AADVWYNLGFVAVTIGDF--NLAKRC 417 (478)
T ss_pred CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch--------------hhhhhhccceeEEeccch--HHHHHH
Confidence 75 6667777766777888899888888877764333332 112355555555677888 889999
Q ss_pred HHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 338 ~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
|+-.... -.-+.+.|+.|--.-.|.|++++|..+++.-
T Consensus 418 frlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 418 FRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9877653 2334789999998889999999999998874
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0001 Score=71.99 Aligned_cols=193 Identities=11% Similarity=0.158 Sum_probs=150.9
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
.|...+-+-|+-.++.++|...|+. .++ +.| ....|+.+-+-|....+...|..-++.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkR------------------ALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKR------------------ALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHH------------------HHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 4566666777777788888888877 233 344 356788888999999999999999987
Q ss_pred CCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHH
Q 035847 210 IKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 210 m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~ 285 (523)
..+ +|-..|-.|-+ +|.-.+.+.=|+-.|++..+ ++| |+..|.+|-+.|.+.+++++|.+.+
T Consensus 390 Avdi~p~DyRAWYGLGQ------------aYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQ------------AYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred HHhcCchhHHHHhhhhH------------HHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 654 67889999999 88899999999999999877 566 6789999999999999999999999
Q ss_pred HHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc---C-CccC-HhHHHHHHHH
Q 035847 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY---N-MEPA-MEQYCCMVDL 360 (523)
Q Consensus 286 ~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~---g-~~p~-~~ty~~li~~ 360 (523)
......|-. +...+..|-+.|-+.++. ++|-.+|+.-.+.. | +.|. ...-.-|-.-
T Consensus 456 krai~~~dt-----------------e~~~l~~LakLye~l~d~--~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 456 KRAILLGDT-----------------EGSALVRLAKLYEELKDL--NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHHhcccc-----------------chHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 999886521 336788899999999999 99998887766531 3 3332 2333335566
Q ss_pred HHhhCCHHHHHHHHHhC
Q 035847 361 LARAGQFDDTLNFMKKM 377 (523)
Q Consensus 361 ~~~~g~~~~A~~~~~~m 377 (523)
+-+.+++++|.......
T Consensus 517 f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 517 FKKMKDFDEASYYATLV 533 (559)
T ss_pred HHhhcchHHHHHHHHHH
Confidence 78899999999877664
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.5e-05 Score=79.72 Aligned_cols=239 Identities=13% Similarity=0.114 Sum_probs=162.4
Q ss_pred chhHHHHHHHHhhhC---CCCCCcchHH----HHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHH
Q 035847 2 VIKNVTLLLQSMDLT---NPDECTVTYA----LIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWT 74 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~---g~~p~~~t~~----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~ 74 (523)
++++|..++.+-.+. +.-.+..... .+-..+...+.+++|..+++.+..-- ..+|..+...-..+++
T Consensus 214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~------e~~~G~~h~~va~~l~ 287 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR------EEVFGEDHPAVAATLN 287 (508)
T ss_pred cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH------HHhcCCCCHHHHHHHH
Confidence 356677776664432 1112222233 34456677889999999999887421 1123333333457888
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcC-CCCce-eHhHHHHHHHhcCCHHHHHHH
Q 035847 75 SMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF-EGNAC-VKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 75 ~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~-~~~~li~~~~~~g~~~~A~~~ 152 (523)
.|-..|.+.|++++|...+++ |.+|+.. ..|. .|++. .++.+...|+..++++.|..+
T Consensus 288 nLa~ly~~~GKf~EA~~~~e~------------------Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 288 NLAVLYYKQGKFAEAEEYCER------------------ALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred HHHHHHhccCChHHHHHHHHH------------------HHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 888999999999999999866 3445554 1221 23322 456777888889999999999
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C---C-hhhHHHH
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-------K---H-LVSWNAM 221 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-------~---~-~~t~~~l 221 (523)
+.. +..++...+.. ...--..+++.|-..|-+.|++++|+++|....+ . . -.+.|-|
T Consensus 348 ~q~-----------al~i~~~~~g~-~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 348 LQK-----------ALKIYLDAPGE-DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred HHH-----------HHHHHHhhccc-cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 987 34444433322 1112356899999999999999999999987642 1 1 2356667
Q ss_pred HHhhhhcCCccccchhhccCCchHHHHHHHHHHh----cCC-CCC-HHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQ----TDM-QPN-TISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 222 i~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~----~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
-. .|.+.++..+|.++|.+-.. .|. .|+ ..||..|...|.+.|+++.|.++.+.+..
T Consensus 416 a~------------~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 416 AE------------AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HH------------HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 67 88899999999999987543 232 233 37788999999999999999999888764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.8e-07 Score=55.60 Aligned_cols=35 Identities=31% Similarity=0.713 Sum_probs=33.1
Q ss_pred hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
++||+||. +|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~------------~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLID------------GLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHH------------HHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999 999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00013 Score=71.31 Aligned_cols=220 Identities=13% Similarity=0.153 Sum_probs=150.2
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc----------------cccccCchhhHhhHh
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK----------------DFSNLSLLKHGKEIH 171 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~----------------~~~~~~~~~~~~~~~ 171 (523)
.++++.|+.+|++.+... ..+...|---+.+=.|+..+..|..+|+.| .--.+|++..++|++
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 456777888888887654 456667777788888899999999999885 233457788888888
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHH
Q 035847 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249 (523)
Q Consensus 172 ~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~l 249 (523)
..-|. .+||...|++.|+.=.+-..++.|+.++++.. .|++.+|---.. -=.++|....|..+
T Consensus 165 erW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyar------------FE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 165 ERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYAR------------FEEKHGNVALARSV 229 (677)
T ss_pred HHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHH------------HHHhcCcHHHHHHH
Confidence 88774 58999999999999999999999999999854 699999877766 66688999888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhh----ccCChhHHHHHHHHHHHhcCCc-hHHHHhHHHhh---h--------------
Q 035847 250 FSRMIQTDMQPNTISLSGVLAACA----QVKGFKLGKEIHGYVLRHHIQL-STGVGIALISI---Q-------------- 307 (523)
Q Consensus 250 f~~M~~~g~~p~~~t~~~ll~a~~----~~g~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~---y-------------- 307 (523)
|...... -.|...-..+..|++ +....+.|.-++...+++--.. ....|..++.. |
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 8876652 123333334444444 4566788888888777642211 12333332221 1
Q ss_pred -----C-C---CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc
Q 035847 308 -----G-L---GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349 (523)
Q Consensus 308 -----~-~---~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p 349 (523)
+ + +-|--+|=-.+..--..|+. +...++|++... ++.|
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~--~~Ire~yErAIa--nvpp 354 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDK--DRIRETYERAIA--NVPP 354 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCH--HHHHHHHHHHHc--cCCc
Confidence 1 1 23444555555555566777 666666666654 4444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-06 Score=54.76 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM 351 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~ 351 (523)
++||+||.+|++.|++ ++|.++|++|.+. |+.||.
T Consensus 1 ~~~n~li~~~~~~~~~--~~a~~~~~~M~~~-g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRV--EEALELFKEMLER-GIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCH--HHHHHHHHHHHHc-CCCCCC
Confidence 4899999999999999 9999999999987 999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00039 Score=67.45 Aligned_cols=189 Identities=15% Similarity=0.072 Sum_probs=128.5
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
..|..+-..|.+.|+.+.|...|++ ... ..| +...|+.+-..|...|++++|...|+.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~-------------------Al~--l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 123 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQ-------------------ALA--LRPDMADAYNYLGIYLTQAGNFDAAYEAFDS 123 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-------------------HHH--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3466777788899999999999988 222 234 577899999999999999999999988
Q ss_pred CCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHH
Q 035847 210 IKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286 (523)
Q Consensus 210 m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~ 286 (523)
..+ | +..+|..+-. .+...|++++|++.|+...+. .|+..........+...++.++|...+.
T Consensus 124 Al~l~P~~~~a~~~lg~------------~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 124 VLELDPTYNYAYLNRGI------------ALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred HHHhCCCCHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 753 4 3467777777 778899999999999998874 4544322222222345678899998886
Q ss_pred HHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc-----CHhHHHHHHHHH
Q 035847 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP-----AMEQYCCMVDLL 361 (523)
Q Consensus 287 ~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p-----~~~ty~~li~~~ 361 (523)
...... .|+. |.. -..+...|+. .++ ..|..+.+.....| ....|..+-..+
T Consensus 190 ~~~~~~-----------------~~~~--~~~-~~~~~~lg~~--~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 190 QRYEKL-----------------DKEQ--WGW-NIVEFYLGKI--SEE-TLMERLKAGATDNTELAERLCETYFYLAKYY 246 (296)
T ss_pred HHHhhC-----------------Cccc--cHH-HHHHHHccCC--CHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 655321 1222 221 1222335666 444 35556554222222 235788899999
Q ss_pred HhhCCHHHHHHHHHhC
Q 035847 362 ARAGQFDDTLNFMKKM 377 (523)
Q Consensus 362 ~~~g~~~~A~~~~~~m 377 (523)
.+.|++++|...+++-
T Consensus 247 ~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 247 LSLGDLDEAAALFKLA 262 (296)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 9999999999999874
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-06 Score=53.08 Aligned_cols=34 Identities=29% Similarity=0.619 Sum_probs=32.3
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p 260 (523)
+.|||++|. +|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~------------a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLR------------ACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHH------------HHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 469999999 9999999999999999999999998
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00066 Score=65.92 Aligned_cols=185 Identities=9% Similarity=0.000 Sum_probs=114.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCC-CceeHhHHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEG-NACVKRPVLDMF 140 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 140 (523)
..|..+-..|.+.|+.++|...|++..+.. +-..+...|+++.|.+.++..++. .| +..+|..+...+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 445555556666677777777776665543 444555666777777777766654 45 456778888888
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-CChhhHH
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHLVSWN 219 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-~~~~t~~ 219 (523)
...|++++|.+.|++ .-. ..|+..........+...++.++|...|..... -+...|.
T Consensus 143 ~~~g~~~eA~~~~~~-------------------al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~ 201 (296)
T PRK11189 143 YYGGRYELAQDDLLA-------------------FYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG 201 (296)
T ss_pred HHCCCHHHHHHHHHH-------------------HHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH
Confidence 899999999999988 222 234332222223334456789999999965332 1222232
Q ss_pred HHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc---CC--CC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT---DM--QP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 220 ~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~---g~--~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
.-+ .....|+..++ +.|..+.+. .+ .| ...+|..+-..+.+.|+.++|...|+...+..
T Consensus 202 ~~~-------------~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 202 WNI-------------VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHH-------------HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 212 22235555554 355555432 11 12 23567788888899999999999999998754
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0013 Score=68.09 Aligned_cols=260 Identities=15% Similarity=0.163 Sum_probs=176.7
Q ss_pred HHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCcee-HhHHHHHHHhc----
Q 035847 78 GMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACV-KRPVLDMFIKC---- 143 (523)
Q Consensus 78 ~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~---- 143 (523)
..+...|++++|++.+..-...- ..+.+.+.|+.++|..++..+++.+ ||-.. |..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 34577899999999986643322 5566778999999999999999885 55554 44555554222
Q ss_pred -CCHHHHHHHhhhc---------------cccccCch-hhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 035847 144 -GRMEMASGEFEEK---------------DFSNLSLL-KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206 (523)
Q Consensus 144 -g~~~~A~~~f~~~---------------~~~~~~~~-~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~v 206 (523)
.+.+....+|++. .+.....+ ..+.......++. |+++ +++.|-..|....+.+-...+
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2567777787772 11111111 1223333344444 6544 677888888766665555555
Q ss_pred HhcCC------------------CCChhhHH--HHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHH
Q 035847 207 FSKIK------------------QKHLVSWN--AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISL 265 (523)
Q Consensus 207 f~~m~------------------~~~~~t~~--~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~ 265 (523)
+.... .|....|. -+-. .|-..|++++|+++.++-.+. .|+ ...|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAq------------hyd~~g~~~~Al~~Id~aI~h--tPt~~ely 231 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQ------------HYDYLGDYEKALEYIDKAIEH--TPTLVELY 231 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHH------------HHHHhCCHHHHHHHHHHHHhc--CCCcHHHH
Confidence 55431 13333454 4445 677899999999999988874 566 4567
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc
Q 035847 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345 (523)
Q Consensus 266 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~ 345 (523)
..--..+-+.|++++|.+..+...+.. .-|...=+-.+..+.++|++ ++|.+++....+.
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD-----------------~~DRyiNsK~aKy~LRa~~~--e~A~~~~~~Ftr~- 291 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELD-----------------LADRYINSKCAKYLLRAGRI--EEAEKTASLFTRE- 291 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCC-----------------hhhHHHHHHHHHHHHHCCCH--HHHHHHHHhhcCC-
Confidence 777778899999999999999988743 23666777788899999999 9999999988876
Q ss_pred CCccCHhHH--------HHHHHHHHhhCCHHHHHHHHHhC
Q 035847 346 NMEPAMEQY--------CCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 346 g~~p~~~ty--------~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+..|-...+ .-.-.+|.|.|++..|++.+...
T Consensus 292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 554443222 33456888999999998876553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.1e-05 Score=72.38 Aligned_cols=155 Identities=13% Similarity=0.137 Sum_probs=106.7
Q ss_pred HHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh-
Q 035847 137 LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL- 215 (523)
Q Consensus 137 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~- 215 (523)
-.+|...|++++|++++.+ + .+.......+..|.+.++++.|.+.++.|++-|.
T Consensus 109 A~i~~~~~~~~~AL~~l~~-----------------------~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD 163 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHK-----------------------G--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED 163 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTT-----------------------T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC
T ss_pred HHHHHHcCCHHHHHHHHHc-----------------------c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3566778999999999877 4 3456667788999999999999999999986322
Q ss_pred hhHHHHHHhhhhcCCccccchhhcc-CCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 216 VSWNAMLAGYALGGFREEITGFTQY-GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~~~-g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
.+-.-+..+|. .+... +.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++....+..
T Consensus 164 ~~l~qLa~awv---------~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-- 231 (290)
T PF04733_consen 164 SILTQLAEAWV---------NLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-- 231 (290)
T ss_dssp HHHHHHHHHHH---------HHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---
T ss_pred HHHHHHHHHHH---------HHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--
Confidence 33334445443 33333 4689999999998664 67888899999889999999999999887765421
Q ss_pred chHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 295 ~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
| .|..+.-.+|......|+.. +.+.+++..++..
T Consensus 232 ~---------------~~~d~LaNliv~~~~~gk~~-~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 P---------------NDPDTLANLIVCSLHLGKPT-EAAERYLSQLKQS 265 (290)
T ss_dssp C---------------CHHHHHHHHHHHHHHTT-TC-HHHHHHHHHCHHH
T ss_pred c---------------CCHHHHHHHHHHHHHhCCCh-hHHHHHHHHHHHh
Confidence 1 13334555677767767652 4566788888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.001 Score=65.60 Aligned_cols=191 Identities=19% Similarity=0.130 Sum_probs=140.6
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcC-CchHHHHhHHHh----hh---
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI-QLSTGVGIALIS----IQ--- 307 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~-~~~~~~~~~li~----~y--- 307 (523)
-+.-.|+.-.|.+-|+......-.++.. |.-+-.+|....+.++..+.|....+..- .||++.-+.-|. -|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence 3445788889999999988765444442 66666689999999999999999988543 455554444333 33
Q ss_pred --------CC-CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh-C
Q 035847 308 --------GL-GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK-M 377 (523)
Q Consensus 308 --------~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~-m 377 (523)
.+ +-++..|-.+--+.-+.+++ ++++..|++.+++ +.-..+.|+-.-..+...+++++|.+.++. |
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~--~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKI--AESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 45 44666777777777788899 9999999999986 344478899899999999999999999987 5
Q ss_pred CCCCCCC------------------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHH
Q 035847 378 PFEPSSA------------------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLM 431 (523)
Q Consensus 378 ~~~p~~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (523)
.++|+.. -.+++..|....++.++++|+....+-.+..-....+.++++.+.++
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6777722 34788899999999999999876555444444455667777764443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.09 E-value=5e-06 Score=51.58 Aligned_cols=34 Identities=21% Similarity=0.520 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc
Q 035847 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349 (523)
Q Consensus 313 ~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p 349 (523)
+.+||++|.+|++.|++ +.|.++|+.|++. |++|
T Consensus 1 v~ty~~ll~a~~~~g~~--~~a~~~~~~M~~~-gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDP--DAALQLFDEMKEQ-GVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCH--HHHHHHHHHHHHh-CCCC
Confidence 46899999999999999 9999999999987 9988
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0024 Score=65.10 Aligned_cols=307 Identities=12% Similarity=0.166 Sum_probs=166.9
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc------HHHHhhccCChHHHHHHHHHHHHhc------CCCCceeHhHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------VYKACSELKDHRVGKDVYDYMISIK------FEGNACVKRPV 136 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ll~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~l 136 (523)
-...|...|.-.-+.+-++-++++|++..+-. -|..++..+++++|.+.+..++... .+.+-..|+-+
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 34678888888888888999999998876654 7788888888888888877765321 12334455555
Q ss_pred HHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC--CCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 137 LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL--ESD--LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 137 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~d--~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
-+..++.-+.-.-+.+= .+++. |+ -+| ...|++|.+-|.+.|.++.|..+|++-.+
T Consensus 217 cdlis~~p~~~~slnvd-------------------aiiR~-gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVD-------------------AIIRG-GIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHhCcchhcccCHH-------------------HHHHh-hcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55444443222111110 11332 43 344 45899999999999999999999987433
Q ss_pred --CChhhHHHHHHhhhhcCCccc---cc-hhhccCC------chHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhH
Q 035847 213 --KHLVSWNAMLAGYALGGFREE---IT-GFTQYGD------GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280 (523)
Q Consensus 213 --~~~~t~~~li~~~~~~g~~~~---i~-~~~~~g~------~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~ 280 (523)
-.+.-++.+..+|++.-..-. +. +-.+.|+ ++-.+.-|+.+...+ | ...|++ +.+ .+...
T Consensus 277 ~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr--~--~~lNsV---lLR-Qn~~n 348 (835)
T KOG2047|consen 277 TVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR--P--LLLNSV---LLR-QNPHN 348 (835)
T ss_pred hheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc--c--hHHHHH---HHh-cCCcc
Confidence 233345555553321100000 00 0001111 111222233322211 0 000110 111 11111
Q ss_pred HHHHHHHHHHh-c-CCchHHHHhHHHhhhC--C--CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC---H
Q 035847 281 GKEIHGYVLRH-H-IQLSTGVGIALISIQG--L--GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA---M 351 (523)
Q Consensus 281 a~~i~~~~~~~-g-~~~~~~~~~~li~~y~--~--~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~---~ 351 (523)
..+-+....-. | ..--+.+|+-.|..-+ . ..-...|..+-+-|-.+|++ +.|..+|+...+. ..+-- .
T Consensus 349 V~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l--~~aRvifeka~~V-~y~~v~dLa 425 (835)
T KOG2047|consen 349 VEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL--DDARVIFEKATKV-PYKTVEDLA 425 (835)
T ss_pred HHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH--HHHHHHHHHhhcC-CccchHHHH
Confidence 22222221110 0 1111223333332211 1 12234689999999999999 9999999988764 22111 3
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCC------------------------------CCCCHHHHHHHHHHHHh
Q 035847 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------------------------------EPCNPDIAEHAARHLFE 401 (523)
Q Consensus 352 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~~~------------------------------~~~~~~~~~~~~~~l~~ 401 (523)
.+|..-..+=.+..+++.|+++++.-..-|... ..|.++.-..+.+++++
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566666667778999999999998854333331 46666666677777777
Q ss_pred hCCCC
Q 035847 402 LEPLS 406 (523)
Q Consensus 402 ~~~~~ 406 (523)
+.-..
T Consensus 506 LriaT 510 (835)
T KOG2047|consen 506 LRIAT 510 (835)
T ss_pred HhcCC
Confidence 65433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0011 Score=64.66 Aligned_cols=202 Identities=11% Similarity=0.100 Sum_probs=119.6
Q ss_pred CChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHH
Q 035847 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ 188 (523)
|+++.|.+.+.+.+...-.-....||.=+ .+-+.|++++|+..|-+ +|.... -++.+.-
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~k--------------lh~il~------nn~evl~ 562 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLK--------------LHAILL------NNAEVLV 562 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHH--------------HHHHHH------hhHHHHH
Confidence 45555555555544332111222233211 34566777777777766 343322 2344555
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 265 (523)
-+.+.|--..+...|.+++-+... | |....+-|-. .|-+.|+-..|++.+-+--. -++-|..|.
T Consensus 563 qianiye~led~aqaie~~~q~~slip~dp~ilskl~d------------lydqegdksqafq~~ydsyr-yfp~nie~i 629 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLAD------------LYDQEGDKSQAFQCHYDSYR-YFPCNIETI 629 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHH------------Hhhcccchhhhhhhhhhccc-ccCcchHHH
Confidence 566666666667777766655432 2 4445555555 66667777777665543322 244455666
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHH-HhcCCCchHHHHHHHHHhHHh
Q 035847 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY-GRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 266 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~-~~~g~~~~~~a~~~~~~m~~~ 344 (523)
.-|-.-|....-.+++.+.|+...- ++|+.+-|-.||..| .+.|.. .+|+++++....+
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaal------------------iqp~~~kwqlmiasc~rrsgny--qka~d~yk~~hrk 689 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAAL------------------IQPNQSKWQLMIASCFRRSGNY--QKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHh------------------cCccHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHh
Confidence 6666666666666777777665532 367777777776544 466888 8888888888764
Q ss_pred cCCccCHhHHHHHHHHHHhhCC
Q 035847 345 YNMEPAMEQYCCMVDLLARAGQ 366 (523)
Q Consensus 345 ~g~~p~~~ty~~li~~~~~~g~ 366 (523)
+.-|.....-|++.++..|.
T Consensus 690 --fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 690 --FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred --CccchHHHHHHHHHhccccc
Confidence 56677888888888887774
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.3e-06 Score=49.85 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
++||+||++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 589999999999999999999999999876
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.011 Score=60.50 Aligned_cols=253 Identities=13% Similarity=0.136 Sum_probs=131.5
Q ss_pred CCCc--chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcC------------CC------------------
Q 035847 19 DECT--VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEK------------MP------------------ 66 (523)
Q Consensus 19 ~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~------------~~------------------ 66 (523)
-||. ..|.+|.+-|.++|.++.|..++++-.+.-+....|..+|+. |.
T Consensus 243 ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 243 FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 3454 468899999999999999999999887665433333331110 00
Q ss_pred -----------------------CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc-------c--------HHHHhhcc
Q 035847 67 -----------------------ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-------G--------VYKACSEL 108 (523)
Q Consensus 67 -----------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g--------ll~~~~~~ 108 (523)
..|+.+|..-+.. ..|+..+-+..|.+..+. | +-+.|-..
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhc
Confidence 1133334333322 234455555555544332 1 55566667
Q ss_pred CChHHHHHHHHHHHHhcCCCC---ceeHhHHHHHHHhcCCHHHHHHHhhhccccccC----chhhHhhHhhhhhhcCCCC
Q 035847 109 KDHRVGKDVYDYMISIKFEGN---ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS----LLKHGKEIHPHHLKKDDLE 181 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~----~~~~~~~~~~~~~~~~g~~ 181 (523)
|+++.|+.+|+...+..++-- ..+|-..-.+=.+..+++.|+++.+.|.+.-.. .++.+..+... +.
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r------lh 474 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR------LH 474 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH------HH
Confidence 777777777777765443221 234555555556666777777777773222111 11222211111 11
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChh-hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----KHLV-SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----~~~~-t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.+..+|...++.--..|-++....+++.+.+ |.++ .|..++. .+.-+++++++|++=..
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE---------------eh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE---------------EHKYFEESFKAYERGIS 539 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------hhHHHHHHHHHHHcCCc
Confidence 2345566666666667777777777777654 3222 2333333 34445666666654322
Q ss_pred cCCCCCH-HHHHHHHHHhh---ccCChhHHHHHHHHHHHhcCCc
Q 035847 256 TDMQPNT-ISLSGVLAACA---QVKGFKLGKEIHGYVLRHHIQL 295 (523)
Q Consensus 256 ~g~~p~~-~t~~~ll~a~~---~~g~~~~a~~i~~~~~~~g~~~ 295 (523)
-=--|+. ..|++-|.-+. ....++.|+.+|++.++ |.+|
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 2112332 22333222222 12356667777776666 4433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0016 Score=65.41 Aligned_cols=226 Identities=14% Similarity=0.103 Sum_probs=148.9
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++.+++++...+. .+++...+..-|.++...|+...-.-+=..+++.- ....++|=++---|.-
T Consensus 260 f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--------------P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 260 FKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--------------PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--------------CCCCcchhhHHHHHHH
Confidence 45666666666553 34455555566666777776655555444444432 1234555555555555
Q ss_pred cCCchHHHHHHHHhhHcc-------------------------------------------HHHHhhccCChHHHHHHHH
Q 035847 83 LGYYEEIVNLFYLLIDEG-------------------------------------------VYKACSELKDHRVGKDVYD 119 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g-------------------------------------------ll~~~~~~~~~~~a~~~~~ 119 (523)
-|+..+|.+.|.+--..+ +---|.+.+.++.|.+.|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 555556655554432211 3333556777888888887
Q ss_pred HHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC--CchhHHHHHHHHHHhc
Q 035847 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE--SDLLVNNSLMDFYAKC 197 (523)
Q Consensus 120 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~d~~~~~~li~~~~k~ 197 (523)
...... +.|+.+.+-+--+..+.+.+.+|...|..+. ...+..+-+ .-..+++.|-+.|-|+
T Consensus 405 ~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l---------------~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 405 QALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKAL---------------EVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHH---------------HHhhhccccccchhHHHHhHHHHHHHH
Confidence 776552 4577788888777778888888888888710 011111111 2344688889999999
Q ss_pred CChHHHHHHHhcC---CCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 035847 198 RYLKVAHCKFSKI---KQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273 (523)
Q Consensus 198 g~~~~A~~vf~~m---~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 273 (523)
+..++|...|+.- ...|..++.++-- .|...|+++.|.+.|++-.. ++||..+-+.+|.-+.
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~------------iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGY------------IYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHH------------HHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999999999864 4578889999877 77889999999999998764 7899988888877543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00022 Score=66.70 Aligned_cols=216 Identities=11% Similarity=0.057 Sum_probs=164.9
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
|...|-..-+-|-..|.+.|.+.+|++.|+.-. .|-+.||-.|-. .|.+-.++..|+.+|.+-..
T Consensus 218 ~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLsk------------vY~ridQP~~AL~~~~~gld- 284 (478)
T KOG1129|consen 218 GCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSK------------VYQRIDQPERALLVIGEGLD- 284 (478)
T ss_pred cchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHH------------HHHHhccHHHHHHHHhhhhh-
Confidence 334455555788899999999999999998754 377788888888 99999999999999998776
Q ss_pred CCCCCHHHHHH-HHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHH
Q 035847 257 DMQPNTISLSG-VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335 (523)
Q Consensus 257 g~~p~~~t~~~-ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~ 335 (523)
..|-.+||.. +-..+-..+..+.+.+++....+.. .-|+...-.+-.+|.-.+++ +-|+
T Consensus 285 -~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-----------------~~nvEaiAcia~~yfY~~~P--E~Al 344 (478)
T KOG1129|consen 285 -SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-----------------PINVEAIACIAVGYFYDNNP--EMAL 344 (478)
T ss_pred -cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-----------------CccceeeeeeeeccccCCCh--HHHH
Confidence 4577777653 4455666788999999999988742 22455555666778888999 9999
Q ss_pred HHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC---CCCCCC------------CCCCHHHHHHHHHHHH
Q 035847 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP---FEPSSA------------EPCNPDIAEHAARHLF 400 (523)
Q Consensus 336 ~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~------------~~~~~~~~~~~~~~l~ 400 (523)
+++++.... |+. +.+.|+.+--.|.-.+++|-++.-|++-- -.|+.. .-||+.+|.+.++..+
T Consensus 345 ryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 345 RYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 999999987 854 66788887777778888888888777631 122222 6799999999999988
Q ss_pred hhCCCCCcceeEEEecCCCCchHHHHHHH
Q 035847 401 ELEPLSSGKVHSFIAGDTSHSLVHKISEK 429 (523)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (523)
..+|.++..++.+..-..+.|.++++.+.
T Consensus 423 ~~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 423 TSDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred ccCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 88888887777766555667777776433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0078 Score=60.06 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=49.7
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--- 212 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--- 212 (523)
+-..+...|++++|...+++ .-. .-+.+...+..+-..|...|++++|...++...+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~-------------------al~-~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARR-------------------ALE-LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHH-------------------HHh-hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 33455666666666666666 222 1122345566666666667777777777665442
Q ss_pred --CCh--hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 213 --KHL--VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 213 --~~~--~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
++. ..|..+.. .+...|++++|+.+|++...
T Consensus 180 ~~~~~~~~~~~~la~------------~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 180 CSSMLRGHNWWHLAL------------FYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCcchhHHHHHHHHH------------HHHHCCCHHHHHHHHHHHhc
Confidence 121 12334445 66666777777777766643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.9e-06 Score=49.18 Aligned_cols=31 Identities=32% Similarity=0.677 Sum_probs=29.2
Q ss_pred hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC
Q 035847 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~ 258 (523)
+|||+||+ +|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~------------~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLIS------------GYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHH------------HHHccchHHHHHHHHHHHhHCcC
Confidence 58999999 99999999999999999999875
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=79.59 Aligned_cols=196 Identities=12% Similarity=0.143 Sum_probs=158.3
Q ss_pred CCCh-hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC--H---HHHHHHHHHhhccCChhHHHHHH
Q 035847 212 QKHL-VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN--T---ISLSGVLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 212 ~~~~-~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~--~---~t~~~ll~a~~~~g~~~~a~~i~ 285 (523)
.||. +.|-..|. ...+.++.++|.+++++.... |.|. . -.|.++++.--.-|.-+...++|
T Consensus 1454 sPNSSi~WI~YMa------------f~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMA------------FHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CCCcchHHHHHHH------------HHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 3654 57888888 888999999999999998763 3221 1 23555555444456777888889
Q ss_pred HHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhC
Q 035847 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365 (523)
Q Consensus 286 ~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g 365 (523)
+++.+.-- .-..|..|..-|.+.+.. ++|-++|+.|.+.+| -....|....+.+.+..
T Consensus 1521 eRAcqycd------------------~~~V~~~L~~iy~k~ek~--~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1521 ERACQYCD------------------AYTVHLKLLGIYEKSEKN--DEADELLRLMLKKFG--QTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred HHHHHhcc------------------hHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHhc--chhhHHHHHHHHHhccc
Confidence 88877421 124688899999999999 999999999999877 55678999999999999
Q ss_pred CHHHHHHHHHh-CCCCCCCC-------------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHH
Q 035847 366 QFDDTLNFMKK-MPFEPSSA-------------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLM 431 (523)
Q Consensus 366 ~~~~A~~~~~~-m~~~p~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (523)
+-+.|..++.+ |..-|..- ++|+.++|+.+++-++.-.|+....|+.++....+|+..+.+ .
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v----R 1654 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV----R 1654 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH----H
Confidence 99999999877 56666622 899999999999999999999999999999999999988775 6
Q ss_pred HHHHHHHHcCCcCCc
Q 035847 432 RLYSEIKKIGYMKRI 446 (523)
Q Consensus 432 ~l~~~m~~~g~~pd~ 446 (523)
.||++....++.|-.
T Consensus 1655 ~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1655 DLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHHHHHhcCCChhH
Confidence 899999999998765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.023 Score=55.32 Aligned_cols=233 Identities=11% Similarity=0.035 Sum_probs=144.9
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChh----hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLV----SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~----t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
.+.-|+....++-+.|...|+.++|...|+.... |+.+ .|..|+. +.|+.++...+-..
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~---------------~eg~~e~~~~L~~~ 291 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG---------------QEGGCEQDSALMDY 291 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH---------------hccCHhhHHHHHHH
Confidence 5777899999999999999999999999998664 4443 3555555 77888888877777
Q ss_pred HHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchH
Q 035847 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332 (523)
Q Consensus 253 M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~ 332 (523)
+.... +-+..-|-.-........+.+.|..+-+..++.. +.++..|-.-=..+...|+. +
T Consensus 292 Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-----------------~r~~~alilKG~lL~~~~R~--~ 351 (564)
T KOG1174|consen 292 LFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-----------------PRNHEALILKGRLLIALERH--T 351 (564)
T ss_pred HHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-----------------cccchHHHhccHHHHhccch--H
Confidence 76531 1122222222222334566666666655554421 11222221112345677888 9
Q ss_pred HHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHH----HhCCCCCCCC----------CCCCHHHHHHHHH
Q 035847 333 EGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFM----KKMPFEPSSA----------EPCNPDIAEHAAR 397 (523)
Q Consensus 333 ~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~----~~m~~~p~~~----------~~~~~~~~~~~~~ 397 (523)
+|.-.|+..+ .+.|. ..+|.-|+..|...|++.||.-+- +.|+-...+. ....-|.|.+.++
T Consensus 352 ~A~IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 352 QAVIAFRTAQ---MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHHHHH---hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9999999886 45655 799999999999999999987764 4454221111 2334577888888
Q ss_pred HHHhhCCCCCcceeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCchhhhhhHHH
Q 035847 398 HLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKL 455 (523)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~l 455 (523)
+.+.++|.-...++....-....|..+++.+.|++ ..-..||.++..|-+.+
T Consensus 429 k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~------~L~~~~D~~LH~~Lgd~ 480 (564)
T KOG1174|consen 429 KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK------HLIIFPDVNLHNHLGDI 480 (564)
T ss_pred hhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH------HHhhccccHHHHHHHHH
Confidence 88888887655444333333345555555544432 12234666555554443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.013 Score=60.10 Aligned_cols=307 Identities=13% Similarity=0.132 Sum_probs=157.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHH
Q 035847 34 KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKA 104 (523)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~ 104 (523)
..|+.++|......-.+. | ..+-++|..+--.+-...++++|+..|......+ +--.
T Consensus 53 ~lg~~~ea~~~vr~glr~----d----------~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL 118 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRN----D----------LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL 118 (700)
T ss_pred cccchHHHHHHHHHHhcc----C----------cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 455666666554433332 2 3567888877666666678888998887766554 1111
Q ss_pred hhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc--cc----------------------cc
Q 035847 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK--DF----------------------SN 160 (523)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~--~~----------------------~~ 160 (523)
-++.++++..........+.. ......|..+..++--.|+...|..+.++- .+ ..
T Consensus 119 Q~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E 197 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 123344444433333333321 112233444444444445555554444431 00 00
Q ss_pred cCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHhhhhcCCccccchhh
Q 035847 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFT 238 (523)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~ 238 (523)
.+.++.+.+.... -+. .+.-....--+--+.+.+.+++++|..++..+.. ||-+-|+-.+.. ++.
T Consensus 198 ~g~~q~ale~L~~-~e~-~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~-----------~lg 264 (700)
T KOG1156|consen 198 AGSLQKALEHLLD-NEK-QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEK-----------ALG 264 (700)
T ss_pred cccHHHHHHHHHh-hhh-HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHH-----------HHH
Confidence 0111111110000 111 1111122233445667778888888888887754 555555554441 222
Q ss_pred ccCCchHHH-HHHHHHHhc---CCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHh-------------
Q 035847 239 QYGDGETAL-EFFSRMIQT---DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI------------- 301 (523)
Q Consensus 239 ~~g~~~~A~-~lf~~M~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~------------- 301 (523)
+--+.-+++ .+|....+. .-.|-....+.+ -...-.+...+++..+.+.|+++-.....
T Consensus 265 k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le 340 (700)
T KOG1156|consen 265 KIKDMLEALKALYAILSEKYPRHECPRRLPLSVL----NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLE 340 (700)
T ss_pred HHhhhHHHHHHHHHHHhhcCcccccchhccHHHh----CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHH
Confidence 222233333 445444332 111211111111 11222334444455555666554222222
Q ss_pred HHHhhh----------------CC-CCCcchHHH--HHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHH
Q 035847 302 ALISIQ----------------GL-GTGSFVWNS--LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLL 361 (523)
Q Consensus 302 ~li~~y----------------~~-~p~~~~~n~--li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~ 361 (523)
-++..| .. .|....|+. ++..|-+.|++ +.|..+.+... +-.|+ .+-|-.=.+.+
T Consensus 341 ~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~--~~A~~yId~AI---dHTPTliEly~~KaRI~ 415 (700)
T KOG1156|consen 341 KLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY--EVALEYIDLAI---DHTPTLIELYLVKARIF 415 (700)
T ss_pred HHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH--HHHHHHHHHHh---ccCchHHHHHHHHHHHH
Confidence 223333 22 566666765 77888899999 99999999876 44787 46777777888
Q ss_pred HhhCCHHHHHHHHHhC
Q 035847 362 ARAGQFDDTLNFMKKM 377 (523)
Q Consensus 362 ~~~g~~~~A~~~~~~m 377 (523)
..+|++++|..++++-
T Consensus 416 kH~G~l~eAa~~l~ea 431 (700)
T KOG1156|consen 416 KHAGLLDEAAAWLDEA 431 (700)
T ss_pred HhcCChHHHHHHHHHH
Confidence 9999999999999885
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.011 Score=59.82 Aligned_cols=109 Identities=11% Similarity=0.020 Sum_probs=77.0
Q ss_pred HHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhH--cc----H
Q 035847 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID--EG----V 101 (523)
Q Consensus 28 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g----l 101 (523)
=++-+...+++++|.+....+...+. -|...+.+=+-++++.+++++|+.+.+.-.. .+ +
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~p--------------dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~f 83 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVP--------------DDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFF 83 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCC--------------CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhH
Confidence 34556678889999999888887652 2555666667788999999999977765432 11 3
Q ss_pred HHHhh--ccCChHHHHHHHHHHHHhcCCCCce-eHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 102 YKACS--ELKDHRVGKDVYDYMISIKFEGNAC-VKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 102 l~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
=++|| +.+..++|...+. |..++.. +...=-..+-+.|++++|+.+|+.
T Consensus 84 EKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~ 135 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQH 135 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45665 6778888887777 4555443 444445567788999999999988
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.003 Score=59.97 Aligned_cols=165 Identities=18% Similarity=0.140 Sum_probs=105.8
Q ss_pred cchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHh-hc----cCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh-
Q 035847 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC-AQ----VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ- 307 (523)
Q Consensus 234 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~-~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y- 307 (523)
|--|.+.+++.+|..+.+++.- ..|-.+..-.+..+- .+ ...+.-|.+.|...-.++..-|..-..--+..|
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 5567788899999988877642 345555444444332 21 224567777787776666655443332222222
Q ss_pred -----------------CC--CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHH-HHHHhhCCH
Q 035847 308 -----------------GL--GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV-DLLARAGQF 367 (523)
Q Consensus 308 -----------------~~--~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li-~~~~~~g~~ 367 (523)
.. ..|.+.|| +..+++..|.. .+|.++|-..... .+ -|..+|.+++ +.|.+.++.
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny--~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNY--VEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcCh--HHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCc
Confidence 11 34444444 67888999999 9999999877543 22 4566776654 588999999
Q ss_pred HHHHHHHHhCCCCCCCC-----------CCCCHHHHHHHHHHHHhhCCC
Q 035847 368 DDTLNFMKKMPFEPSSA-----------EPCNPDIAEHAARHLFELEPL 405 (523)
Q Consensus 368 ~~A~~~~~~m~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~ 405 (523)
+-|++++-++.-..+.. +.+.+-.+.+++..+-.++|.
T Consensus 445 ~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 445 QLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 99999998885433332 555566667777777777765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0018 Score=67.02 Aligned_cols=225 Identities=16% Similarity=0.185 Sum_probs=144.9
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL 215 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~ 215 (523)
..+...|++++|+..+++ -.. -+.....+....-..|.+.|+.++|..++..+.+ |+-
T Consensus 12 ~il~e~g~~~~AL~~L~~-------------------~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn 71 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEK-------------------NEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN 71 (517)
T ss_pred HHHHHCCCHHHHHHHHHh-------------------hhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 456788999999999987 444 3444466777888999999999999999999875 655
Q ss_pred hhHHHHHHhhhhcCCccccchhh-----ccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCh-hHHHHHHHHHH
Q 035847 216 VSWNAMLAGYALGGFREEITGFT-----QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF-KLGKEIHGYVL 289 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~-----~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~i~~~~~ 289 (523)
..|-..+.. +.. .....+...++|+++...- |.......+.-.+.....+ ..+.+.+..+.
T Consensus 72 ~~Yy~~L~~-----------~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 72 YDYYRGLEE-----------ALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred HHHHHHHHH-----------HHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHH
Confidence 555444441 221 1234677788888886643 4333333332222221222 34445566666
Q ss_pred HhcCCchHHHHhH-------------HHhhh-------------C---C-CCCcchH--HHHHHHHHhcCCCchHHHHHH
Q 035847 290 RHHIQLSTGVGIA-------------LISIQ-------------G---L-GTGSFVW--NSLIDMYGRCGAIQKNEGWRY 337 (523)
Q Consensus 290 ~~g~~~~~~~~~~-------------li~~y-------------~---~-~p~~~~~--n~li~~~~~~g~~~~~~a~~~ 337 (523)
+.|+++-.....+ ++..| + . .|....| .-+-..|-..|+. ++|+++
T Consensus 139 ~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~--~~Al~~ 216 (517)
T PF12569_consen 139 RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY--EKALEY 216 (517)
T ss_pred hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH--HHHHHH
Confidence 6776553322222 22222 1 1 3444445 4556778889999 999999
Q ss_pred HHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC-CCCCCC-----------CCCCHHHHHHHHHHHH
Q 035847 338 FEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP-FEPSSA-----------EPCNPDIAEHAARHLF 400 (523)
Q Consensus 338 ~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~-----------~~~~~~~~~~~~~~l~ 400 (523)
.+...+. +|+ +..|..-.+.|-+.|++++|.+.++.-. +.+... ..|..+.|+..+....
T Consensus 217 Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 217 IDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 9988764 677 6888888999999999999999988753 232222 6778888866655443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00053 Score=61.04 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=96.7
Q ss_pred CCCCHHHHHHHHHHhhc-----cCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh--CC-CCCcchHHHHHHHHHhcCCC
Q 035847 258 MQPNTISLSGVLAACAQ-----VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ--GL-GTGSFVWNSLIDMYGRCGAI 329 (523)
Q Consensus 258 ~~p~~~t~~~ll~a~~~-----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y--~~-~p~~~~~n~li~~~~~~g~~ 329 (523)
-..|..+|..+++.+.+ .|.++-....+..|.+.|+..|..+|+.|++.+ |. .|... +-++---|-+..
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~-fQ~~F~hyp~Qq-- 119 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNF-FQAEFMHYPRQQ-- 119 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccH-HHHHhccCcHHH--
Confidence 45688899999988865 477888888899999999999999999999987 33 33322 222322333333
Q ss_pred chHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCH-HHHHHHHHhCC----CCCCCC----CCCCHHHHHHHHHHHH
Q 035847 330 QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF-DDTLNFMKKMP----FEPSSA----EPCNPDIAEHAARHLF 400 (523)
Q Consensus 330 ~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~-~~A~~~~~~m~----~~p~~~----~~~~~~~~~~~~~~l~ 400 (523)
+-|++++++|... |+.||.+|+..+++.+++.+.. .+..+++-=|+ ..|-.. -...+++|..+.+++-
T Consensus 120 --~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP~plp~~lP~Dp~eLA~lal~rm~ 196 (228)
T PF06239_consen 120 --ECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINPWPLPRPLPQDPLELAKLALRRMS 196 (228)
T ss_pred --HHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCCCCCCcCCCCCHHHHHHHHHHHhc
Confidence 7799999999876 9999999999999999988874 33333332232 233222 3345677776666654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.058 Score=54.93 Aligned_cols=343 Identities=13% Similarity=0.083 Sum_probs=187.9
Q ss_pred hhHHHHHHHHhhhCCCCCCc-chHHHHHHhccCCCChHHHHHHHHHHHHhCCCc-c--hHHH-----------HhcCCCC
Q 035847 3 IKNVTLLLQSMDLTNPDECT-VTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-C--AFLG-----------MFEKMPE 67 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~-----------~f~~~~~ 67 (523)
+++|+..+. |..++. .+...--..|-+.+++++|..++..+.+.+..- + ..+. +....|.
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 455555555 333333 355555567778999999999999998776531 1 1111 3555555
Q ss_pred CCcchHHHHHH---HHHhcCCchHHHHHHHHhhHcc------------------------HHHHhhccCChHHHHHHHHH
Q 035847 68 RNVFSWTSMMG---MYNVLGYYEEIVNLFYLLIDEG------------------------VYKACSELKDHRVGKDVYDY 120 (523)
Q Consensus 68 ~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g------------------------ll~~~~~~~~~~~a~~~~~~ 120 (523)
....+|..+-+ .++..|++.+|+++++.-.+.+ +.-.+-..|+.++|.+++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 45556665554 4566899999999998773322 44445578999999999999
Q ss_pred HHHhcCCCCce----eHhHHHHHHHhcCCHH-HHHHHhhhcccccc--------------------C--ch--hhHhhHh
Q 035847 121 MISIKFEGNAC----VKRPVLDMFIKCGRME-MASGEFEEKDFSNL--------------------S--LL--KHGKEIH 171 (523)
Q Consensus 121 m~~~g~~p~~~----~~~~li~~~~~~g~~~-~A~~~f~~~~~~~~--------------------~--~~--~~~~~~~ 171 (523)
.++.. .+|.. .-|.|+.+-....-++ .++..|+. .+... . .+ ..+.++.
T Consensus 250 ~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~-~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r 327 (652)
T KOG2376|consen 250 IIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKS-QVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR 327 (652)
T ss_pred HHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99886 44542 2333333222222222 33334433 00000 0 00 0111111
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHhc-C-ChHHHHHHHhcCCC--C--ChhhHHHHHHhhhhcCCccccchhhccCCchH
Q 035847 172 PHHLKKDDLESDLLVNNSLMDFYAKC-R-YLKVAHCKFSKIKQ--K--HLVSWNAMLAGYALGGFREEITGFTQYGDGET 245 (523)
Q Consensus 172 ~~~~~~~g~~~d~~~~~~li~~~~k~-g-~~~~A~~vf~~m~~--~--~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~ 245 (523)
.......+-.|.. .+.+++....++ . ....|..++...-+ | ..+.--+++. -....|+++.
T Consensus 328 ~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ------------l~is~gn~~~ 394 (652)
T KOG2376|consen 328 ELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ------------LKISQGNPEV 394 (652)
T ss_pred HHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH------------HHHhcCCHHH
Confidence 1111121223332 223333322222 1 13334444333321 1 1223333333 5566788888
Q ss_pred HHHHHH--------HHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHH
Q 035847 246 ALEFFS--------RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWN 317 (523)
Q Consensus 246 A~~lf~--------~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n 317 (523)
|++++. ...+.+-.|- +...++..+.+.++-+.|.+++...++.-....+ +-..-..+|-
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t----------~s~~l~~~~~ 462 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT----------GSIALLSLMR 462 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc----------cchHHHhHHH
Confidence 877777 4444344443 3344555566666666677776666552110000 0000112333
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCCCCCC
Q 035847 318 SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382 (523)
Q Consensus 318 ~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~ 382 (523)
-+...-.++|+. ++|..+++++.+. -.+|..+...+|.+|++. +.+.|..+-..++-.+.
T Consensus 463 ~aa~f~lr~G~~--~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~~ 522 (652)
T KOG2376|consen 463 EAAEFKLRHGNE--EEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLKG 522 (652)
T ss_pred HHhHHHHhcCch--HHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCccc
Confidence 344445577888 9999999999874 478899999999999976 67888888888764443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0011 Score=63.83 Aligned_cols=157 Identities=12% Similarity=0.057 Sum_probs=101.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
+..+.-..-.+|...|++++|.++++.- .+.......+. .|.+.++++.|.+.++.|.+.. .|
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vq------------i~L~~~R~dlA~k~l~~~~~~~--eD- 163 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQ------------ILLKMNRPDLAEKELKNMQQID--ED- 163 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHH------------HHHHTT-HHHHHHHHHHHHCCS--CC-
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHH------------HHHHcCCHHHHHHHHHHHHhcC--Cc-
Confidence 3333333335566778888888888765 44555556666 7788888888988888887642 33
Q ss_pred HHHHHHHHHhhc----cCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHH
Q 035847 263 ISLSGVLAACAQ----VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338 (523)
Q Consensus 263 ~t~~~ll~a~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~ 338 (523)
.|..-+..++.. ...+..|..+|+++.+. + .++..+.|.+..++...|++ ++|.+++
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~----------------~~t~~~lng~A~~~l~~~~~--~eAe~~L 224 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-F----------------GSTPKLLNGLAVCHLQLGHY--EEAEELL 224 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S------------------SHHHHHHHHHHHHHCT-H--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-c----------------CCCHHHHHHHHHHHHHhCCH--HHHHHHH
Confidence 444445555443 23578888888887552 1 23556777788888888888 8888887
Q ss_pred HHhHHhcCCccC-HhHHHHHHHHHHhhCCH-HHHHHHHHhCC
Q 035847 339 EMMKKEYNMEPA-MEQYCCMVDLLARAGQF-DDTLNFMKKMP 378 (523)
Q Consensus 339 ~~m~~~~g~~p~-~~ty~~li~~~~~~g~~-~~A~~~~~~m~ 378 (523)
.+.... .|+ ..+...+|-.....|+. +.+.+++.++.
T Consensus 225 ~~al~~---~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 225 EEALEK---DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHCCC----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHh---ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 775432 343 56666677777777776 66777777763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0073 Score=54.23 Aligned_cols=180 Identities=14% Similarity=0.081 Sum_probs=123.3
Q ss_pred HHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 79 MYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 79 ~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
+|.+.|+...|..-+++-.+.+ +...|-+.|..+.|.+-|+..++.. +-+..+.|..-..+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHH
Confidence 4444444444444444444433 2223334444444444444444432 44677899999999999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh-hhHHHHHHhhh
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL-VSWNAMLAGYA 226 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~-~t~~~li~~~~ 226 (523)
...|++| +...-..--..+|..+.-+-.+.|+.+.|+..|++-.+ |+. .+.-.+-.
T Consensus 123 ~q~F~~A------------------l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~--- 181 (250)
T COG3063 123 MQQFERA------------------LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELAR--- 181 (250)
T ss_pred HHHHHHH------------------HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHH---
Confidence 9999982 33322222344677777777899999999999988654 332 35556666
Q ss_pred hcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 227 ~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
...+.|++..|..+++.....+. ++..+.-..|.---..|+.+.+.+.-.++.+
T Consensus 182 ---------~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 182 ---------LHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ---------HHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77789999999999999888776 8888888888888888998888877666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.021 Score=56.80 Aligned_cols=219 Identities=10% Similarity=0.084 Sum_probs=144.9
Q ss_pred CChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHH
Q 035847 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVN 187 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~ 187 (523)
|+.-.+.+-|+..++....++ ..|--+-.+|....+.++-.+.|++ ..+ +.| |..+|
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~------------------A~~---ldp~n~dvY 397 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNK------------------AED---LDPENPDVY 397 (606)
T ss_pred CCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHH------------------HHh---cCCCCCchh
Confidence 455566666666665532221 1244455566666666666666666 232 333 45566
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSKIKQK---HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~m~~~---~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
..--.++.-.+++++|..=|+.-..- ++.+|--+-. +..+.++++++...|++-+.+ ++-.+..
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~------------a~Yr~~k~~~~m~~Fee~kkk-FP~~~Ev 464 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCC------------ALYRQHKIAESMKTFEEAKKK-FPNCPEV 464 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHh-CCCCchH
Confidence 66666666678899999999887652 3445544433 666778999999999998875 5556788
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
|+-.-..+...++++.|.+.++..++..-..+....| +-...--+++ .+--.+++ .+|..+++...+
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~---------~~plV~Ka~l-~~qwk~d~--~~a~~Ll~KA~e- 531 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN---------AAPLVHKALL-VLQWKEDI--NQAENLLRKAIE- 531 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc---------chhhhhhhHh-hhchhhhH--HHHHHHHHHHHc-
Confidence 8888899999999999999999988743221110000 0000001111 11123777 899999988764
Q ss_pred cCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 345 YNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 345 ~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+.|. ...|.+|-..-...|++++|+++|++-
T Consensus 532 --~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 532 --LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred --cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4565 578999999999999999999999984
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.031 Score=56.30 Aligned_cols=167 Identities=17% Similarity=0.230 Sum_probs=121.9
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHH
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ----K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~----~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M 253 (523)
..+|+ .+|-.+|+.--|..-+..|+.+|.+..+ + ++..++++|. -|| .++..-|.++|+-=
T Consensus 362 ~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE------------y~c-skD~~~AfrIFeLG 427 (656)
T KOG1914|consen 362 DIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME------------YYC-SKDKETAFRIFELG 427 (656)
T ss_pred ccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH------------HHh-cCChhHHHHHHHHH
Confidence 34444 4777888888888889999999998864 3 7778899988 555 56688899999864
Q ss_pred HhcCCCCCHHHH-HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchH
Q 035847 254 IQTDMQPNTISL-SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332 (523)
Q Consensus 254 ~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~ 332 (523)
... -+|...| ..-++-+.+.++-..++.+|+.....++.++. ....|+.+|+-=..-|++ .
T Consensus 428 Lkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k--------------s~~Iw~r~l~yES~vGdL--~ 489 (656)
T KOG1914|consen 428 LKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK--------------SKEIWDRMLEYESNVGDL--N 489 (656)
T ss_pred HHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh--------------hHHHHHHHHHHHHhcccH--H
Confidence 432 2343333 45667778889999999999999988777665 557899999999999999 8
Q ss_pred HHHHHHHHhHHhcC--CccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 333 EGWRYFEMMKKEYN--MEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 333 ~a~~~~~~m~~~~g--~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.+.++-+++...+. ..|...+-..+++-|+-.+....-..-++.|
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 88888888877654 5555566667777777666655444333333
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0024 Score=65.85 Aligned_cols=112 Identities=15% Similarity=0.280 Sum_probs=82.5
Q ss_pred cchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCc
Q 035847 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313 (523)
Q Consensus 234 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~ 313 (523)
|.+......+.+|+.+++.++.... -+--|..+-+-|++.|+++.|+++|-..
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~------------------------- 791 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA------------------------- 791 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc-------------------------
Confidence 5566777888899999998877543 3344677778899999999999987543
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
-.++-.|..|.+.|++ ++|.++-++.. |-...+..|-+-..-+-..|++.+|.+++-..
T Consensus 792 ~~~~dai~my~k~~kw--~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 792 DLFKDAIDMYGKAGKW--EDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred chhHHHHHHHhccccH--HHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 3466778899999999 88888755432 55666777777666777777777777765443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.095 Score=52.93 Aligned_cols=131 Identities=16% Similarity=0.229 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCc-hHHHHhHHHhhh-------------
Q 035847 243 GETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL-STGVGIALISIQ------------- 307 (523)
Q Consensus 243 ~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y------------- 307 (523)
.+..-+.+++.... .+.| ..+|...++.--+...+..|+.+|....+.+..+ +++++++++..|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence 45566667766653 3344 4578888888889999999999999999988887 889999999888
Q ss_pred -CC--CCCcchH-HHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC--HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 308 -GL--GTGSFVW-NSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 308 -~~--~p~~~~~-n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
|+ -+|...| +..++-+...++- ..+..+|++.... ++.|+ ...|..+|+-=..-|++.-+.++-+++
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd--~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDD--NNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcc--hhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44 3454444 4456666666666 7888899988877 77777 478888888888889988888886664
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.013 Score=65.02 Aligned_cols=230 Identities=12% Similarity=0.111 Sum_probs=169.5
Q ss_pred CC-cchHHHHHHhccCCCChHHHHHHHHHHHHhC-CCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 035847 20 EC-TVTYALIFQRCPKLNNLELGIQVHAHLIVCG-VELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI 97 (523)
Q Consensus 20 p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 97 (523)
|| ...|-..+.-....++++.|+.+.++....= +. +- +--...|.++++.-.-.|.-+...++|++..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R---------Ee-eEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR---------EE-EEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc---------hh-HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44 4567777777788899999999988877542 10 00 1124578888887777788888888888877
Q ss_pred Hcc--------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhh
Q 035847 98 DEG--------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169 (523)
Q Consensus 98 ~~g--------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~ 169 (523)
+.- |..-|.+.+..++|-++++.|.+. +.-...+|...++.+.+..+-+.|..++.+|
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA------------- 1590 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRA------------- 1590 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHH-------------
Confidence 654 778888899999999999999865 4456778999999999999989999998882
Q ss_pred HhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHH
Q 035847 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246 (523)
Q Consensus 170 ~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A 246 (523)
++..--.-.+....-.+.+-.++|+.+.++.+|+.... +-...|+..|. .-.++|+.+.+
T Consensus 1591 -----L~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid------------~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1591 -----LKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID------------MEIKHGDIKYV 1653 (1710)
T ss_pred -----HhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH------------HHHccCCHHHH
Confidence 33201111344555666777889999999999998764 34568999999 88899999999
Q ss_pred HHHHHHHHhcCCCCCH--HHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 247 LEFFSRMIQTDMQPNT--ISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 247 ~~lf~~M~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
..+|++....++.|-. +.|.--|..=-+.|+-+.++.+-..+.+
T Consensus 1654 R~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1654 RDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 9999999998887753 5666666665566766666665444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0015 Score=51.77 Aligned_cols=82 Identities=12% Similarity=0.174 Sum_probs=62.8
Q ss_pred hhhccCCchHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDM-QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF 314 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~ 314 (523)
.+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++...-. ..+...|
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~--~~ie~kl-------------------------- 85 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS--EDIENKL-------------------------- 85 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc--hhHHHHH--------------------------
Confidence 67777999999999999999999 999999999998877643211 2222222
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 363 (523)
-+.+.++..|... +++|+..||+.++..+.+
T Consensus 86 -----------------~~LLtvYqDiL~~-~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 86 -----------------TNLLTVYQDILSN-KLKPNDETYNIVLGSLLK 116 (120)
T ss_pred -----------------HHHHHHHHHHHHh-ccCCcHHHHHHHHHHHHH
Confidence 5567788888877 889999999988887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.026 Score=50.82 Aligned_cols=187 Identities=15% Similarity=0.127 Sum_probs=143.4
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
...|--.|...|+...|..-++++ ++. .|+ ..+|..+-..|-+.|..+.|.+-|+...
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekA------------------L~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl 96 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKA------------------LEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKAL 96 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH------------------HHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH
Confidence 344566789999999999999882 333 454 5588899999999999999999998754
Q ss_pred C---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHH
Q 035847 212 Q---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGY 287 (523)
Q Consensus 212 ~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~ 287 (523)
+ .+....|..=. .+|..|++++|...|++-...---| -..||..+--+..+.|+.+.|+..+.+
T Consensus 97 sl~p~~GdVLNNYG~------------FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 97 SLAPNNGDVLNNYGA------------FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred hcCCCccchhhhhhH------------HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 2 34455555555 6779999999999999988753222 346777776677789999999999999
Q ss_pred HHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCH
Q 035847 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367 (523)
Q Consensus 288 ~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~ 367 (523)
.++..-. ...+.-.|-...-+.|+. -.|..+++..... ..++..+.-.-|+.-.+.|+-
T Consensus 165 aL~~dp~-----------------~~~~~l~~a~~~~~~~~y--~~Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 165 ALELDPQ-----------------FPPALLELARLHYKAGDY--APARLYLERYQQR--GGAQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred HHHhCcC-----------------CChHHHHHHHHHHhcccc--hHHHHHHHHHHhc--ccccHHHHHHHHHHHHHhccH
Confidence 8875321 223455677777888999 9999999998765 348988888888888889998
Q ss_pred HHHHHH
Q 035847 368 DDTLNF 373 (523)
Q Consensus 368 ~~A~~~ 373 (523)
+.|.++
T Consensus 224 ~~a~~Y 229 (250)
T COG3063 224 AAAQRY 229 (250)
T ss_pred HHHHHH
Confidence 887766
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.013 Score=60.80 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=87.8
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
.+.+......+..|..+++.+.... .-..-|..+-+-|+..|+++.|.++|-++ +
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~----------------------~- 792 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA----------------------D- 792 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc----------------------c-
Confidence 3444455566666666666655442 22334556667777777777777777661 2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC--hhhHHHHHHhhhhcCCccc--------------cchhhccCCch
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH--LVSWNAMLAGYALGGFREE--------------ITGFTQYGDGE 244 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~--~~t~~~li~~~~~~g~~~~--------------i~~~~~~g~~~ 244 (523)
.++--|++|.+.|++++|.++-.+...|. +++|-+--.-+-+.|++.+ |+.|-+.|..+
T Consensus 793 -----~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~d 867 (1636)
T KOG3616|consen 793 -----LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDD 867 (1636)
T ss_pred -----hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcch
Confidence 34556788888888888888877655443 3345544444444554443 44555555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 035847 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287 (523)
Q Consensus 245 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~ 287 (523)
+.+++..+-.-..+ ..|-..+-.-+-..|++..|+.-|-.
T Consensus 868 dmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 868 DMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHh
Confidence 55555443321111 23344445556667888888775533
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0084 Score=56.99 Aligned_cols=182 Identities=13% Similarity=0.123 Sum_probs=128.6
Q ss_pred HHHHHHhcCCchHHHHHHHHhhHcc----HHHHhh---------ccCChHHHHHHHHHHHHhcCCCCceeHh-HHHHHHH
Q 035847 76 MMGMYNVLGYYEEIVNLFYLLIDEG----VYKACS---------ELKDHRVGKDVYDYMISIKFEGNACVKR-PVLDMFI 141 (523)
Q Consensus 76 li~~~~~~g~~~~A~~l~~~m~~~g----ll~~~~---------~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~ 141 (523)
|+--|.+.+++.+|..+..++.... ++++.. +...++.|.+.|..+-.++..-|+.... ++-+.+.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 4446778899999999887775433 333322 2234677888888888888777766544 4555566
Q ss_pred hcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhH
Q 035847 142 KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSW 218 (523)
Q Consensus 142 ~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~ 218 (523)
-.-++|+.+-.+.. +++.-..-|...+| +..+++..|+..+|+++|-.+.. +|-++|
T Consensus 371 L~~qFddVl~YlnS-------------------i~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y 430 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNS-------------------IESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILY 430 (557)
T ss_pred HHHHHHHHHHHHHH-------------------HHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHH
Confidence 66778888888877 66633344555554 67889999999999999998876 456788
Q ss_pred HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHH-HHhhccCChhHHHHHHHHHHHh
Q 035847 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL-AACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 219 ~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
-+++. ..|.++++++-|+++|-.+.. ..+..+..-+| +-|.+.+.+--|.+.|+.+...
T Consensus 431 ~s~LA-----------rCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 431 KSMLA-----------RCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHH-----------HHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 88775 278899999999988766643 33445544444 5688889998888888887653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0081 Score=56.09 Aligned_cols=182 Identities=13% Similarity=-0.008 Sum_probs=121.9
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.....+-.+...|.+.|+.++|...|++..+ |+. .+|..+-. .|.+.|++++|+..|+++.+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~------------~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAY------------AYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH------------HHHhcCCHHHHHHHHHHHHH
Confidence 3455677788889999999999999997753 432 35666666 88899999999999999987
Q ss_pred cCCC-CCH-HHHHHHHHHhhcc--------CChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCc-chHHHHHHHHH
Q 035847 256 TDMQ-PNT-ISLSGVLAACAQV--------KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS-FVWNSLIDMYG 324 (523)
Q Consensus 256 ~g~~-p~~-~t~~~ll~a~~~~--------g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~-~~~n~li~~~~ 324 (523)
..-. |.. .++..+-.++.+. |+.+.|.+.+..+.+..-.. ...+.++.......... ...-.+-..|.
T Consensus 99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 177 (235)
T TIGR03302 99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRMDYLRNRLAGKELYVARFYL 177 (235)
T ss_pred HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 111 1333333334333 67888999988887753221 11222221110000000 00124556788
Q ss_pred hcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 325 RCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 325 ~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
+.|+. ++|...|+...+.+.-.|. ...+..+..++...|++++|..+++.+.
T Consensus 178 ~~g~~--~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 178 KRGAY--VAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HcCCh--HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999 9999999999877433343 5788899999999999999999988864
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.072 Score=51.98 Aligned_cols=256 Identities=12% Similarity=0.056 Sum_probs=158.2
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLD 138 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 138 (523)
-|+..-..+-..+...|+..+|+..|++.+..+ .--.+.+.|+.+....+.+.+.... .-....|-.-..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 367777888888889999999999998766544 1112234556555555555544321 111222222222
Q ss_pred HHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHH---HHHHhcCChHHHHHHHhcCC--CC
Q 035847 139 MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM---DFYAKCRYLKVAHCKFSKIK--QK 213 (523)
Q Consensus 139 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li---~~~~k~g~~~~A~~vf~~m~--~~ 213 (523)
......++..|+.+-++ .+..|....-++| ..+...|+.++|.--|+... .|
T Consensus 309 ~l~~~K~~~rAL~~~eK-----------------------~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEK-----------------------CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred hhhhhhhHHHHHHHHHH-----------------------HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 33344556666665555 1222222111221 44556788888888887654 33
Q ss_pred -ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHH-HHhhc-cCChhHHHHHHHHHHH
Q 035847 214 -HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL-AACAQ-VKGFKLGKEIHGYVLR 290 (523)
Q Consensus 214 -~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~i~~~~~~ 290 (523)
+..+|.-|+. .|.-.|++.+|.-+-++-... +.-+..|.+.+- ..|.- ...-++|+++++.-.+
T Consensus 366 ~rL~~Y~GL~h------------sYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~ 432 (564)
T KOG1174|consen 366 YRLEIYRGLFH------------SYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK 432 (564)
T ss_pred hhHHHHHHHHH------------HHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence 6788999999 888888888887766554332 223444544441 23332 3344778777766554
Q ss_pred hcCCchHHHHhHHHhhhCCCCC-cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHH
Q 035847 291 HHIQLSTGVGIALISIQGLGTG-SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369 (523)
Q Consensus 291 ~g~~~~~~~~~~li~~y~~~p~-~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~ 369 (523)
. .|+ +..-+.+..-+...|+. +++..+++.-... .||....+.|-+.+...+.+.+
T Consensus 433 ~------------------~P~Y~~AV~~~AEL~~~Eg~~--~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 433 I------------------NPIYTPAVNLIAELCQVEGPT--KDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQK 489 (564)
T ss_pred c------------------CCccHHHHHHHHHHHHhhCcc--chHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHH
Confidence 2 222 23456667777888888 8999999887754 7899999999999999999999
Q ss_pred HHHHHHh-CCCCCCC
Q 035847 370 TLNFMKK-MPFEPSS 383 (523)
Q Consensus 370 A~~~~~~-m~~~p~~ 383 (523)
|++.+.. +...|+.
T Consensus 490 am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 490 AMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHhcCccc
Confidence 9888776 4555543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.074 Score=53.95 Aligned_cols=243 Identities=12% Similarity=0.079 Sum_probs=131.5
Q ss_pred HHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 78 GMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 78 ~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
.-+-..+++.+.+++++...+.. -|..+...|+..+-..+=..+++. .+....+|=++---|.-.|+..+
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 33334444444444444444333 122233333333333333333333 24455666666666666666677
Q ss_pred HHHHhhhc----------------cccccCchhhHhhHhhhh---hhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 149 ASGEFEEK----------------DFSNLSLLKHGKEIHPHH---LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 149 A~~~f~~~----------------~~~~~~~~~~~~~~~~~~---~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
|++.|.++ +++..+.-+.+..-+..+ |.. ...|.. |.. --|.+.++++.|.+.|.+
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~L--Ylg--mey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSL--YLG--MEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHH--HHH--HHHHHhccHHHHHHHHHH
Confidence 77766662 222222222222222111 111 233332 222 236667888888888876
Q ss_pred CCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc--CC---C-CCHHHHHHHHHHhhccCChhH
Q 035847 210 IKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT--DM---Q-PNTISLSGVLAACAQVKGFKL 280 (523)
Q Consensus 210 m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~--g~---~-p~~~t~~~ll~a~~~~g~~~~ 280 (523)
... | |....+-+-- ...+.+.+.+|...|+.-.+. .+ + --..|++.|-.+|.+.+..++
T Consensus 406 A~ai~P~Dplv~~Elgv------------vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 406 ALAIAPSDPLVLHELGV------------VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHhcCCCcchhhhhhhh------------eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 542 3 4455555533 444567788888888876621 11 1 134556666667777777777
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHH
Q 035847 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360 (523)
Q Consensus 281 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~ 360 (523)
|...+++.+... +.|..++.++--.|...|.+ +.|.+.|..-. .+.|+..+-+.|+..
T Consensus 474 AI~~~q~aL~l~-----------------~k~~~~~asig~iy~llgnl--d~Aid~fhKaL---~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 474 AIDYYQKALLLS-----------------PKDASTHASIGYIYHLLGNL--DKAIDHFHKAL---ALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHcC-----------------CCchhHHHHHHHHHHHhcCh--HHHHHHHHHHH---hcCCccHHHHHHHHH
Confidence 777777766521 34566677777777777777 77777777654 567776666665553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0065 Score=60.32 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=84.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS 150 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 150 (523)
.-|..-+. +-+.|++++|+..++.+...- +-|...+....+.+.+.++.++|.
T Consensus 308 a~YG~A~~-~~~~~~~d~A~~~l~~L~~~~--------------------------P~N~~~~~~~~~i~~~~nk~~~A~ 360 (484)
T COG4783 308 AQYGRALQ-TYLAGQYDEALKLLQPLIAAQ--------------------------PDNPYYLELAGDILLEANKAKEAI 360 (484)
T ss_pred HHHHHHHH-HHHhcccchHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCChHHHH
Confidence 33444443 346788888888888766542 223334444456666666666666
Q ss_pred HHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhh
Q 035847 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYA 226 (523)
Q Consensus 151 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~ 226 (523)
+.|++ ... ..|+ ....-.+-.+|.+.|+..+|.++++.-.. .|...|..|-.+|.
T Consensus 361 e~~~k-------------------al~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~ 419 (484)
T COG4783 361 ERLKK-------------------ALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA 419 (484)
T ss_pred HHHHH-------------------HHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 66666 222 2343 34444555666666666666666655432 24556666666555
Q ss_pred hcCCccc-----cchhhccCCchHHHHHHHHHHhcCCCCCHHHH
Q 035847 227 LGGFREE-----ITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265 (523)
Q Consensus 227 ~~g~~~~-----i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 265 (523)
+.|+..+ -.+|.-.|++++|+..+....+. ++++..++
T Consensus 420 ~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 420 ELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred HhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 5444444 33666778888888887777664 33444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.066 Score=49.96 Aligned_cols=70 Identities=10% Similarity=-0.018 Sum_probs=43.9
Q ss_pred hCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 035847 15 LTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY 94 (523)
Q Consensus 15 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 94 (523)
..|+..-..-|.+++..+.+...+..+.++...-.+.. .++....+.|-.+|-+..++..|-..|+
T Consensus 3 ~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--------------p~~rAgLSlLgyCYY~~Q~f~~AA~CYe 68 (459)
T KOG4340|consen 3 GSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS--------------PRSRAGLSLLGYCYYRLQEFALAAECYE 68 (459)
T ss_pred cccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--------------ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556666666666666777776655544432 2355666677777777777788887777
Q ss_pred HhhH
Q 035847 95 LLID 98 (523)
Q Consensus 95 ~m~~ 98 (523)
++..
T Consensus 69 QL~q 72 (459)
T KOG4340|consen 69 QLGQ 72 (459)
T ss_pred HHHh
Confidence 7654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0083 Score=56.03 Aligned_cols=173 Identities=11% Similarity=0.000 Sum_probs=113.0
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCc----eeHhHHHHHHHhc
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNA----CVKRPVLDMFIKC 143 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~ 143 (523)
.....+-.+...+.+.|++++|...|++.... .|+. .++..+...|.+.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---------------------------~p~~~~~~~a~~~la~~~~~~ 83 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR---------------------------YPFSPYAEQAQLDLAYAYYKS 83 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------------CCCchhHHHHHHHHHHHHHhc
Confidence 34556667777788888888888888876653 2432 3556677888899
Q ss_pred CCHHHHHHHhhhccccccCchhhHhhHhhhhhhc-CCCCCch-hHHHHHHHHHHhc--------CChHHHHHHHhcCCC-
Q 035847 144 GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK-DDLESDL-LVNNSLMDFYAKC--------RYLKVAHCKFSKIKQ- 212 (523)
Q Consensus 144 g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~d~-~~~~~li~~~~k~--------g~~~~A~~vf~~m~~- 212 (523)
|+++.|...|++ ... ..-.|.. .++..+-..+.+. |+.++|.+.|+.+.+
T Consensus 84 ~~~~~A~~~~~~-------------------~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 84 GDYAEAIAAADR-------------------FIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred CCHHHHHHHHHH-------------------HHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999988 322 0111111 1333344444443 678888888887753
Q ss_pred -CCh-hhHHHHHH----------hhhhcCCccccchhhccCCchHHHHHHHHHHhcCC-CC-CHHHHHHHHHHhhccCCh
Q 035847 213 -KHL-VSWNAMLA----------GYALGGFREEITGFTQYGDGETALEFFSRMIQTDM-QP-NTISLSGVLAACAQVKGF 278 (523)
Q Consensus 213 -~~~-~t~~~li~----------~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~-~p-~~~t~~~ll~a~~~~g~~ 278 (523)
|+. ..+.++.. .....+ ..|.+.|++.+|+..|++.....- .| ....+..+..++...|+.
T Consensus 145 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~a-----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 145 YPNSEYAPDAKKRMDYLRNRLAGKELYVA-----RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 433 22222210 000000 067788999999999999887532 23 356788899999999999
Q ss_pred hHHHHHHHHHHHh
Q 035847 279 KLGKEIHGYVLRH 291 (523)
Q Consensus 279 ~~a~~i~~~~~~~ 291 (523)
++|..+++.+...
T Consensus 220 ~~A~~~~~~l~~~ 232 (235)
T TIGR03302 220 DLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0061 Score=60.80 Aligned_cols=120 Identities=11% Similarity=0.129 Sum_probs=94.0
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
.+...++++.|+++|+++.+.. |+.. ..+...+...++-.+|.+++...++.. +.|...
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-----------------p~d~~L 236 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-----------------PQDSEL 236 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-----------------CCCHHH
Confidence 5556789999999999999875 6543 346666666777788888877776531 224445
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH-hHHHHHHHHHHhhCCHHHHHHHHHhCCCCC
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM-EQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~p 381 (523)
.+.-...|.+.++. +.|..+.+++.+ ..|+. .+|..|..+|...|++++|+-.++.+|+.|
T Consensus 237 L~~Qa~fLl~k~~~--~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 237 LNLQAEFLLSKKKY--ELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 55566778899999 999999999975 47885 699999999999999999999999998554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.19 Score=57.05 Aligned_cols=299 Identities=9% Similarity=-0.049 Sum_probs=174.2
Q ss_pred HhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcc--hHHHHHHHHHhcCCchHHHHHHHHhhHc-c------
Q 035847 30 QRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVF--SWTSMMGMYNVLGYYEEIVNLFYLLIDE-G------ 100 (523)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~-g------ 100 (523)
..+...++++.+..........--..+. -..+... .-..+-..+...|++++|...+++.... .
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNI-------ELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS 489 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCc-------ccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH
Confidence 3344667888888877766543110000 0001111 1112223445789999999998876541 1
Q ss_pred -------HHHHhhccCChHHHHHHHHHHHHhcCC---C--CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHh
Q 035847 101 -------VYKACSELKDHRVGKDVYDYMISIKFE---G--NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168 (523)
Q Consensus 101 -------ll~~~~~~~~~~~a~~~~~~m~~~g~~---p--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~ 168 (523)
+-..+...|+++.|...+.......-. + ...+++.+-..+...|+++.|...++++ .
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a-----------l 558 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA-----------F 558 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------H
Confidence 333455689999999888887754211 1 1234455666788899999999998881 1
Q ss_pred hHhhhhhhcCCCC--C-chhHHHHHHHHHHhcCChHHHHHHHhcCCC------CC--hhhHHHHHHhhhhcCCccccchh
Q 035847 169 EIHPHHLKKDDLE--S-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ------KH--LVSWNAMLAGYALGGFREEITGF 237 (523)
Q Consensus 169 ~~~~~~~~~~g~~--~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~------~~--~~t~~~li~~~~~~g~~~~i~~~ 237 (523)
.+. -.. +.. + ...++..+-..+...|++++|...+++... +. ..++..+-. .+
T Consensus 559 ~~~---~~~-~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~------------~~ 622 (903)
T PRK04841 559 QLI---EEQ-HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK------------IS 622 (903)
T ss_pred HHH---HHh-ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH------------HH
Confidence 111 111 211 1 233455566667778999999988877532 11 123333334 66
Q ss_pred hccCCchHHHHHHHHHHhc----CCCCCH-HHH-HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCC
Q 035847 238 TQYGDGETALEFFSRMIQT----DMQPNT-ISL-SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT 311 (523)
Q Consensus 238 ~~~g~~~~A~~lf~~M~~~----g~~p~~-~t~-~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p 311 (523)
...|++++|.+.+.+.... +..+.. ... ...+..+...|+.+.+.+.+............ .
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-------------~ 689 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH-------------F 689 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch-------------h
Confidence 7889999999999887542 111111 111 11123344578888888876554321100000 0
Q ss_pred CcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh---cCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 312 GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE---YNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 312 ~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~---~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
....+..+..++...|+. ++|..+++..... .|..++ ..+...+-.++.+.|+.++|...+.+.
T Consensus 690 ~~~~~~~~a~~~~~~g~~--~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 690 LQGQWRNIARAQILLGQF--DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 011234567778889999 9999998877652 233332 345666777888999999999888774
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.09 Score=51.35 Aligned_cols=217 Identities=12% Similarity=0.060 Sum_probs=132.3
Q ss_pred CCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcC-CHHHHHHHhhhcccccc
Q 035847 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCG-RMEMASGEFEEKDFSNL 161 (523)
Q Consensus 84 g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g-~~~~A~~~f~~~~~~~~ 161 (523)
+.+.+|...|+.....+ +..++|..+.+.+++. .|+ ..+|+.--..+.+.| ++++++..+++
T Consensus 34 ~~~~~a~~~~ra~l~~~--------e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~------ 97 (320)
T PLN02789 34 PEFREAMDYFRAVYASD--------ERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAED------ 97 (320)
T ss_pred HHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHH------
Confidence 34455555555443322 4555666666655543 343 345655555566666 57888888887
Q ss_pred CchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCCh--HHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccch
Q 035847 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL--KVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITG 236 (523)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~--~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~ 236 (523)
+-. .-..+..+|+..-..+.+.|+. +++..+++.+.+ +|..+|+-.-- .
T Consensus 98 -------------~i~-~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w------------~ 151 (320)
T PLN02789 98 -------------VAE-DNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQW------------V 151 (320)
T ss_pred -------------HHH-HCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHH------------H
Confidence 322 1233445666554445556652 566777766653 57778888777 7
Q ss_pred hhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc---CCh----hHHHHHHHHHHHhcCCchHHHHhHHHhhhCC
Q 035847 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV---KGF----KLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309 (523)
Q Consensus 237 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~---g~~----~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 309 (523)
+.+.|++++|++.++++.+.+.. |...|+.....+.+. |.. +...+....+++..
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~----------------- 213 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN----------------- 213 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-----------------
Confidence 77788999999999999987654 455555544444443 222 23333333333321
Q ss_pred CCCcchHHHHHHHHHhcC----CCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhh
Q 035847 310 GTGSFVWNSLIDMYGRCG----AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364 (523)
Q Consensus 310 ~p~~~~~n~li~~~~~~g----~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~ 364 (523)
+-|...|+-+-..|...+ +. .+|.+++.+..+. + ..+......|++.|+..
T Consensus 214 P~N~SaW~Yl~~ll~~~~~~l~~~--~~~~~~~~~~~~~-~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 214 PRNESPWRYLRGLFKDDKEALVSD--PEVSSVCLEVLSK-D-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred CCCcCHHHHHHHHHhcCCcccccc--hhHHHHHHHhhcc-c-CCcHHHHHHHHHHHHhh
Confidence 347788998888887733 34 5688888776542 1 33467788899999863
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.019 Score=52.70 Aligned_cols=144 Identities=11% Similarity=0.110 Sum_probs=105.5
Q ss_pred HHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHH
Q 035847 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194 (523)
Q Consensus 115 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~ 194 (523)
.++.+.+.......+......-...|++.|++++|++.... |-..+... .=+..+
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-----------------------~~~lE~~A--l~VqI~ 147 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-----------------------GENLEAAA--LNVQIL 147 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-----------------------cchHHHHH--HHHHHH
Confidence 34555555444444444444455678999999999999876 33333333 334456
Q ss_pred HhcCChHHHHHHHhcCCCC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 035847 195 AKCRYLKVAHCKFSKIKQK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273 (523)
Q Consensus 195 ~k~g~~~~A~~vf~~m~~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 273 (523)
.|..+++-|.+.++.|.+- +-.|-+-|-.+|.+ ...-.+...+|+-+|++|-+. ..|+..+.+....++.
T Consensus 148 lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~--------la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVK--------LATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH--------HhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHH
Confidence 6788899999999999984 44577767775552 223345689999999999764 7899999999999999
Q ss_pred ccCChhHHHHHHHHHHHhc
Q 035847 274 QVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 274 ~~g~~~~a~~i~~~~~~~g 292 (523)
..|++++|..+++......
T Consensus 219 ~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HhcCHHHHHHHHHHHHhcc
Confidence 9999999999999988753
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.011 Score=53.67 Aligned_cols=153 Identities=10% Similarity=0.092 Sum_probs=106.8
Q ss_pred HHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK 156 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~ 156 (523)
+..|.+.|++..+..-.+.+... ...+...++.+++...+...++.. +.|...|..|-..|...|++++|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~- 98 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP--LHQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQ- 98 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc--cccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH-
Confidence 35677888887764444332111 112223455666666666666653 55788899999999999999999999998
Q ss_pred cccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHH-HHhcCC--hHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcC
Q 035847 157 DFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDF-YAKCRY--LKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGG 229 (523)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~-~~k~g~--~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g 229 (523)
... +.| +..++..+-.+ |...|+ .++|.+++++..+ | +...+..+-.
T Consensus 99 ------------------Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~------ 152 (198)
T PRK10370 99 ------------------ALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS------ 152 (198)
T ss_pred ------------------HHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH------
Confidence 322 233 56677777775 467777 5899999998764 3 5567777777
Q ss_pred CccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 230 ~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
.+.+.|++++|+..|+.+.+. ..|+..-+.
T Consensus 153 ------~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~ 182 (198)
T PRK10370 153 ------DAFMQADYAQAIELWQKVLDL-NSPRVNRTQ 182 (198)
T ss_pred ------HHHHcCCHHHHHHHHHHHHhh-CCCCccHHH
Confidence 888999999999999999875 345554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0083 Score=62.28 Aligned_cols=228 Identities=13% Similarity=0.100 Sum_probs=159.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhHcc-HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 74 TSMMGMYNVLGYYEEIVNLFYLLIDEG-VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 74 ~~li~~~~~~g~~~~A~~l~~~m~~~g-ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
-.+-..+...|-..+|+.+|++..... ++..|+..|+...|..+...-.+. +||...|..+.+..-...-++.|.++
T Consensus 402 ~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHH
Confidence 456667788899999999999876554 899999999999999998888773 78999999999888888888888888
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcC
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGG 229 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g 229 (523)
++. ... + .--.+-....+.++++++.+.|+.-.+ --..+|-..=.
T Consensus 480 sn~-------------------~sa-r------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~------ 527 (777)
T KOG1128|consen 480 SNY-------------------ISA-R------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGC------ 527 (777)
T ss_pred hhh-------------------hhH-H------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccH------
Confidence 887 211 1 000000111226788888888875432 23346665544
Q ss_pred CccccchhhccCCchHHHHHHHHHHhcCCCCCH-HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhC
Q 035847 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNT-ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308 (523)
Q Consensus 230 ~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 308 (523)
+..+.+++..|.+.|..-.. ..||. ..||.+-.++.+.++-.+|...+.+..+....
T Consensus 528 ------~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-------------- 585 (777)
T KOG1128|consen 528 ------AALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-------------- 585 (777)
T ss_pred ------HHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC--------------
Confidence 66678888888888887765 45654 56888888888888888888888888876533
Q ss_pred CCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHH
Q 035847 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362 (523)
Q Consensus 309 ~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~ 362 (523)
+...|-+-+....+.|.+ ++|.+.+.+|.......-|..+-..++....
T Consensus 586 ---~w~iWENymlvsvdvge~--eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 586 ---HWQIWENYMLVSVDVGEF--EDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred ---CCeeeechhhhhhhcccH--HHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 334566666677778888 8888877776553222224455554444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=57.68 Aligned_cols=118 Identities=15% Similarity=0.224 Sum_probs=79.9
Q ss_pred CCCceeHhHHHHHHHhc-----CCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChH
Q 035847 127 EGNACVKRPVLDMFIKC-----GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201 (523)
Q Consensus 127 ~p~~~~~~~li~~~~~~-----g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~ 201 (523)
..|..+|..+|+.|.+. |.++=....+.. |...|++.|..+|+.||+.+=| |.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~-------------------M~efgv~kDL~~Y~~LLDvFPK-g~fv 103 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKK-------------------MDEFGVEKDLEVYKALLDVFPK-GKFV 103 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHH-------------------HHHcCCcccHHHHHHHHHhCCC-CCcc
Confidence 56777888888888754 666666666666 6666999999999999987765 3221
Q ss_pred HHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCh-hH
Q 035847 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF-KL 280 (523)
Q Consensus 202 ~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~-~~ 280 (523)
-..+|+. +-. -...+-+-|++++++|...|+.||..|+..|++.+++.+.. .+
T Consensus 104 -p~n~fQ~-----------~F~--------------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K 157 (228)
T PF06239_consen 104 -PRNFFQA-----------EFM--------------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKK 157 (228)
T ss_pred -cccHHHH-----------Hhc--------------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHH
Confidence 1122221 111 12345567999999999999999999999999999887654 33
Q ss_pred HHHHHHHHHH
Q 035847 281 GKEIHGYVLR 290 (523)
Q Consensus 281 a~~i~~~~~~ 290 (523)
..++.--|.+
T Consensus 158 ~~rmmYWmpk 167 (228)
T PF06239_consen 158 YRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHH
Confidence 3333333333
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.19 Score=54.48 Aligned_cols=190 Identities=10% Similarity=0.079 Sum_probs=127.3
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPV 136 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 136 (523)
.|...-+.-+.++..++.+.+-++++++..-.. ++-.-+-..+.....+..+++-... .| .+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-ch------hH
Confidence 355555667899999999999999999886544 2222222334444455555543322 22 23
Q ss_pred HHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh
Q 035847 137 LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV 216 (523)
Q Consensus 137 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~ 216 (523)
-......+-+++|..+|++ +..+....+.||. ..++++.|.+.-++..+|.
T Consensus 1055 a~iai~~~LyEEAF~ifkk------------------------f~~n~~A~~VLie---~i~~ldRA~efAe~~n~p~-- 1105 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKK------------------------FDMNVSAIQVLIE---NIGSLDRAYEFAERCNEPA-- 1105 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHH------------------------hcccHHHHHHHHH---HhhhHHHHHHHHHhhCChH--
Confidence 4455567778899999887 3445555666664 3577888888877776664
Q ss_pred hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCch
Q 035847 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296 (523)
Q Consensus 217 t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~ 296 (523)
.|+.+-. +-.+.|.+.+|++-|-+. -|+..|.-+++++.+.|.+++-.+.+...++..-+|.
T Consensus 1106 vWsqlak------------AQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~ 1167 (1666)
T KOG0985|consen 1106 VWSQLAK------------AQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY 1167 (1666)
T ss_pred HHHHHHH------------HHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc
Confidence 5888888 777888888888766432 2567788888888888888888888877777655553
Q ss_pred HHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCC
Q 035847 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329 (523)
Q Consensus 297 ~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~ 329 (523)
+ =+.||-+|++.+++
T Consensus 1168 i------------------d~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1168 I------------------DSELIFAYAKTNRL 1182 (1666)
T ss_pred c------------------hHHHHHHHHHhchH
Confidence 2 24566666666666
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.044 Score=59.17 Aligned_cols=184 Identities=10% Similarity=0.054 Sum_probs=129.7
Q ss_pred CcchHHHHHHHHHhcCCchHH-HHHHHHhhHccHHHHhhccCChHHHHH-HHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEI-VNLFYLLIDEGVYKACSELKDHRVGKD-VYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A-~~l~~~m~~~gll~~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
+....+.+=.+.+.-|..++| .++..+..+ ++...+......++.. +.+.... +..++..+-.|-......|..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~La~i~~~~g~~ 102 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ--VLERHAAVHKPAAALPELLDYVRR--YPHTELFQVLVARALEAAHRS 102 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH--HHHHhhhhcchHhhHHHHHHHHHh--ccccHHHHHHHHHHHHHcCCc
Confidence 344445555566677777776 456666555 5655555554444432 2333222 456678888888889999999
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChh-hHHHHH
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLV-SWNAML 222 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~-t~~~li 222 (523)
++|..+++. .-. +.|| ......+...+.+.+++++|....++..+ |+.. ..+.+-
T Consensus 103 ~ea~~~l~~-------------------~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 103 DEGLAVWRG-------------------IHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHH-------------------HHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 999999988 332 4665 44667778888899999999999888765 4333 344444
Q ss_pred HhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 223 ~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
. ++.+.|++++|.++|++.... .|+ ..++.++-.++-..|+.++|...|+...+.
T Consensus 162 ~------------~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 K------------SWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred H------------HHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 677889999999999999873 344 678888888888899999999999888774
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.075 Score=56.13 Aligned_cols=127 Identities=11% Similarity=0.039 Sum_probs=82.3
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...|..+.+.|.+.++++.|+-.+..|....-. -.+-+....++ .+=.-+-..-.+.|.+++|+.+|++-++-+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga----RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA----RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH----HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4577999999999999999999888888743210 00111111232 211122223356799999999999988888
Q ss_pred HH-HHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 101 VY-KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 101 ll-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
++ +.|-..|.+++|.++-+.=-+..+.. ||-.--.-+-..++.+.|++.|++
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRiHLr~---Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRIHLRN---TYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhccceehhh---hHHHHHHHHHhhccHHHHHHHHHh
Confidence 44 45667899999998877544433332 333333444456889999999998
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.047 Score=54.40 Aligned_cols=198 Identities=9% Similarity=0.051 Sum_probs=122.3
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch-hHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL-LVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
.|..+-..+...|+.+++.+.+... .+..-..++. .........+...|++++|..+++..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~ 69 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAA------------------AQALAARATERERAHVEALSAWIAGDLPKALALLEQL 69 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHH------------------HHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445556666667777776666551 1110111121 11222233456789999999988875
Q ss_pred CC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhccCChhHHHHHHH
Q 035847 211 KQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI-SLSGVLAACAQVKGFKLGKEIHG 286 (523)
Q Consensus 211 ~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~i~~ 286 (523)
.+ | |...++. ..++.. .....+....+.+.+.. .....|+.. ....+-..+...|++++|.+.++
T Consensus 70 l~~~P~~~~a~~~-~~~~~~--------~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 70 LDDYPRDLLALKL-HLGAFG--------LGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred HHHCCCcHHHHHH-hHHHHH--------hcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 43 4 3344442 211110 12234555566665554 223344443 33445557778999999999999
Q ss_pred HHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH--hHHHHHHHHHHhh
Q 035847 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM--EQYCCMVDLLARA 364 (523)
Q Consensus 287 ~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~--~ty~~li~~~~~~ 364 (523)
...+.. +.+...+..+-..|...|++ ++|..+++.........|+. ..|..+...+...
T Consensus 139 ~al~~~-----------------p~~~~~~~~la~i~~~~g~~--~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 139 RALELN-----------------PDDAWAVHAVAHVLEMQGRF--KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHhhC-----------------CCCcHHHHHHHHHHHHcCCH--HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 988742 23456778888899999999 99999999887642222333 3456788889999
Q ss_pred CCHHHHHHHHHhC
Q 035847 365 GQFDDTLNFMKKM 377 (523)
Q Consensus 365 g~~~~A~~~~~~m 377 (523)
|++++|..++++.
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999985
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.021 Score=59.47 Aligned_cols=209 Identities=14% Similarity=0.127 Sum_probs=125.6
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+...+-+.|-+..|..++++. ..|..+|..|...|+..+|..+..+ ..+ -
T Consensus 404 laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q------------------~le---k 453 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQ------------------ELE---K 453 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHH------------------Hhc---C
Confidence 334444455555555555543 2334455555555555555555444 122 2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p 260 (523)
+||...|..+.+..-.---.++|.++++....+--.+|+-++- .+++++++.+.|+.-.+.. .-
T Consensus 454 ~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~---------------~~~~fs~~~~hle~sl~~n-pl 517 (777)
T KOG1128|consen 454 DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLIL---------------SNKDFSEADKHLERSLEIN-PL 517 (777)
T ss_pred CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccc---------------cchhHHHHHHHHHHHhhcC-cc
Confidence 5666666666666555555666777666544332223333332 4677777777777644421 11
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCC-CcchHHHHHHHHHhcCCCchHHHHHHHH
Q 035847 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT-GSFVWNSLIDMYGRCGAIQKNEGWRYFE 339 (523)
Q Consensus 261 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p-~~~~~n~li~~~~~~g~~~~~~a~~~~~ 339 (523)
-..||-..=.+.-++++...+.+.|..-.. ..| +...||++-.+|.+.|+- .+|...+.
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvt------------------L~Pd~~eaWnNls~ayi~~~~k--~ra~~~l~ 577 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVT------------------LEPDNAEAWNNLSTAYIRLKKK--KRAFRKLK 577 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhh------------------cCCCchhhhhhhhHHHHHHhhh--HHHHHHHH
Confidence 234444443344456666666666554443 233 456899999999999999 99999998
Q ss_pred HhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 340 ~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+..+- + .-+...|...+-...+.|.+++|.+.+.++
T Consensus 578 EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 578 EALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 88764 5 444556666777778899999999998775
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0032 Score=63.11 Aligned_cols=111 Identities=11% Similarity=0.093 Sum_probs=95.6
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP 135 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 135 (523)
-+.+....+++.+....+++++..++.+.+... +++.|-..|..+.+..++..=...|+-||.+++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 356677778888888888899999998887764 99999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhc
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~ 197 (523)
||+.+.+.|++..|.++... |...+.-.+..|+..-+.++.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~-------------------~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATE-------------------MMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHH-------------------HHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999988 44436666777887777777776
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.65 Score=49.10 Aligned_cols=407 Identities=13% Similarity=0.083 Sum_probs=223.4
Q ss_pred hHHHHHHHHhhhCCCCCCcchHHHHHHhcc---CCCChHHHHHHHHHHHHhCCCc----chHHH---HhcCCC----CCC
Q 035847 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCP---KLNNLELGIQVHAHLIVCGVEL----CAFLG---MFEKMP----ERN 69 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~~g~~~----~~~~~---~f~~~~----~~~ 69 (523)
++++.-+..-..++..-+..++..+...+. ..++.+.+ .+...+...-... |..+. ++..+. +.|
T Consensus 244 ~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd 322 (799)
T KOG4162|consen 244 KEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQND 322 (799)
T ss_pred hHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcch
Confidence 455666666666667777777777776554 44556655 3333332222222 22222 222221 357
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (523)
...|..|--+....|+++.+.+.|++....- +-..+...|.-..|..++..-... .|++..-..++-++
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~--~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK--SEQPSDISVLLMAS 400 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc--ccCCCcchHHHHHH
Confidence 7788888888888888888888887754322 333444555555666666554332 32222223333322
Q ss_pred Hh----cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcC-----------ChHHHHH
Q 035847 141 IK----CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR-----------YLKVAHC 205 (523)
Q Consensus 141 ~~----~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g-----------~~~~A~~ 205 (523)
.- -|.++++...-.++ .+..-...+ ......|-.+--+|...- ...++.+
T Consensus 401 klc~e~l~~~eegldYA~ka--------------i~~~~~~~~-~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKA--------------ISLLGGQRS-HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred HHHHhchhhhhhHHHHHHHH--------------HHHhhhhhh-hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 22 23444444443331 100000001 111223333333333221 1233444
Q ss_pred HHhcCC-----CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhH
Q 035847 206 KFSKIK-----QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280 (523)
Q Consensus 206 vf~~m~-----~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~ 280 (523)
.+++-. .|+++-|-++ -|+..++.+.|++..++...-+-.-+...|-.|.-.+...+++..
T Consensus 466 ale~av~~d~~dp~~if~lal--------------q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYLAL--------------QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred HHHHHHhcCCCCchHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 454432 3555555555 567788899999999998887556677777777667777788888
Q ss_pred HHHHHHHHHH-hcCCc------------------hHHHHhHHHhhh----------------------------------
Q 035847 281 GKEIHGYVLR-HHIQL------------------STGVGIALISIQ---------------------------------- 307 (523)
Q Consensus 281 a~~i~~~~~~-~g~~~------------------~~~~~~~li~~y---------------------------------- 307 (523)
|..+.+.... .|... ...+...+++..
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 8888766544 33200 001111111111
Q ss_pred -------------------------CC--CCC------cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhH
Q 035847 308 -------------------------GL--GTG------SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQ 353 (523)
Q Consensus 308 -------------------------~~--~p~------~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~t 353 (523)
.. .|+ ...|...-+.+.+.+.. ++|...+.+..+ +.|- ...
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~--~~a~~CL~Ea~~---~~~l~~~~ 686 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGND--DEARSCLLEASK---IDPLSASV 686 (799)
T ss_pred hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHh---cchhhHHH
Confidence 11 122 12355666777788888 888877777654 3443 445
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHh-CCCCCCCC-----------CCCCHHHHHH--HHHHHHhhCCCCCcceeEEEecCCC
Q 035847 354 YCCMVDLLARAGQFDDTLNFMKK-MPFEPSSA-----------EPCNPDIAEH--AARHLFELEPLSSGKVHSFIAGDTS 419 (523)
Q Consensus 354 y~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~-----------~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~ 419 (523)
|...-..+-..|.+++|.+.|.. .-+.|+.+ .-|+..+++. .....++.+|.+...|..
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~------- 759 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY------- 759 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH-------
Confidence 55555677788999999988765 56788887 5666666666 777788888887754432
Q ss_pred CchHHHHHHHHHHHHHHHHHcCCcCCchhhhhhHHHHHHHccccCCCCCcEEE
Q 035847 420 HSLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRV 472 (523)
Q Consensus 420 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~la~a~~l~~~~~~~~~~i 472 (523)
|-.-++..|-.- .-.+-.+.|..|-.+.|-.|..+
T Consensus 760 -------------LG~v~k~~Gd~~-----~Aaecf~aa~qLe~S~PV~pFs~ 794 (799)
T KOG4162|consen 760 -------------LGEVFKKLGDSK-----QAAECFQAALQLEESNPVLPFSN 794 (799)
T ss_pred -------------HHHHHHHccchH-----HHHHHHHHHHhhccCCCcccccc
Confidence 222334444322 22455667777877777666433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.015 Score=58.11 Aligned_cols=126 Identities=10% Similarity=0.137 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
..-.+|+..+...++++.|..+|+++.+.+...+..|.. .+...++-.+|++++++..+.. +-|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~------------v~l~~~~E~~AI~ll~~aL~~~-p~d~~L 236 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLAR------------VYLLMNEEVEAIRLLNEALKEN-PQDSEL 236 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHH------------HHHhcCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 344556666777899999999999998766555556777 7777888899999999988642 235555
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCC-cchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG-SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~-~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
+..-...|.+.++.+.|.++...+.+. .|+ -.+|..|..+|.+.|++ ++|+..++.+.-
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~l------------------sP~~f~~W~~La~~Yi~~~d~--e~ALlaLNs~Pm 296 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVEL------------------SPSEFETWYQLAECYIQLGDF--ENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh------------------CchhHHHHHHHHHHHHhcCCH--HHHHHHHhcCcC
Confidence 555566688899999999999998873 344 44999999999999999 999999998863
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.59 Score=50.91 Aligned_cols=245 Identities=13% Similarity=0.142 Sum_probs=135.5
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc----HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCC
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR 145 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 145 (523)
...|+.+-.+-.+.|...+|++-|-+-..-+ +++.+.+.|.+++-...+-...+..-+| .+=+.||-+|+|.++
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNR 1181 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhch
Confidence 4679999999999999999999886544333 8888888888888777776666654444 445678888888888
Q ss_pred HHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhh
Q 035847 146 MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225 (523)
Q Consensus 146 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~ 225 (523)
+.+-..+... ||+.-...+-+-|...|.++.|.-++. ++..|.-|-.
T Consensus 1182 l~elE~fi~g--------------------------pN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~-- 1228 (1666)
T KOG0985|consen 1182 LTELEEFIAG--------------------------PNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLAS-- 1228 (1666)
T ss_pred HHHHHHHhcC--------------------------CCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHH--
Confidence 8777666543 333333334444444455555554444 3334444444
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHH--------------HHHHHHHHh
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK--------------EIHGYVLRH 291 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~--------------~i~~~~~~~ 291 (523)
.+...|++..|.+.-+.. -+..||--+-.||...+.+..|. ++.+.-...
T Consensus 1229 ----------TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~r 1292 (1666)
T KOG0985|consen 1229 ----------TLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDR 1292 (1666)
T ss_pred ----------HHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhc
Confidence 444445555444433221 13345555544554433332221 122222222
Q ss_pred cCCchHHHHhHHHhhh----CC-CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCc------cCHhHHHHHHHH
Q 035847 292 HIQLSTGVGIALISIQ----GL-GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME------PAMEQYCCMVDL 360 (523)
Q Consensus 292 g~~~~~~~~~~li~~y----~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~------p~~~ty~~li~~ 360 (523)
|. +.-||..+ |+ ......|+-|--.|++-. + ++.++.++-.-.+-++. -..+.|+-++-.
T Consensus 1293 Gy------FeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p--~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfL 1363 (1666)
T KOG0985|consen 1293 GY------FEELISLLEAGLGLERAHMGMFTELAILYSKYK-P--EKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFL 1363 (1666)
T ss_pred Cc------HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-H--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 21 12222222 44 445566777777776654 2 44444433332221211 124678888888
Q ss_pred HHhhCCHHHHHHHH
Q 035847 361 LARAGQFDDTLNFM 374 (523)
Q Consensus 361 ~~~~g~~~~A~~~~ 374 (523)
|.+-..+|.|.-.+
T Consensus 1364 Y~~y~eyDNAa~tm 1377 (1666)
T KOG0985|consen 1364 YDKYEEYDNAALTM 1377 (1666)
T ss_pred HHhhhhhhHHHHHH
Confidence 88888888775443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.18 Score=50.92 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=70.4
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc--HHHHh---
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--VYKAC--- 105 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--ll~~~--- 105 (523)
+....|+++.|...|...+... .+|-+.|+.=..+|+..|++++|++==.+-.+.. +-++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--------------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~ 76 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--------------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRK 76 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--------------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHh
Confidence 4457899999999999887654 4689999999999999999999987766655543 33444
Q ss_pred ----hccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHH
Q 035847 106 ----SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140 (523)
Q Consensus 106 ----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (523)
.-.|++++|..-|.+=++.. +.+...++.|..++
T Consensus 77 Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 77 GAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 44678889988888766552 33555667777766
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.032 Score=51.18 Aligned_cols=129 Identities=11% Similarity=0.000 Sum_probs=102.2
Q ss_pred CCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 035847 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206 (523)
Q Consensus 127 ~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~v 206 (523)
..|..+.+++.....+.|++..|...|.+ ... .-.+|..+||.+--+|.+.|+.+.|+.-
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rk-------------------A~~-l~p~d~~~~~~lgaaldq~Gr~~~Ar~a 156 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRK-------------------AAR-LAPTDWEAWNLLGAALDQLGRFDEARRA 156 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHH-------------------Hhc-cCCCChhhhhHHHHHHHHccChhHHHHH
Confidence 34556777788999999999999999999 555 5577899999999999999999999998
Q ss_pred HhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHH
Q 035847 207 FSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283 (523)
Q Consensus 207 f~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 283 (523)
|.+..+ .+....|.|-- .|.-.|+.+.|..++..-...+.. |...-..+.-+....|+++.|+.
T Consensus 157 y~qAl~L~~~~p~~~nNlgm------------s~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 157 YRQALELAPNEPSIANNLGM------------SLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHHHhccCCchhhhhHHH------------HHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHh
Confidence 887653 34556777766 777789999999999998876543 45555556667788999999998
Q ss_pred HHHHH
Q 035847 284 IHGYV 288 (523)
Q Consensus 284 i~~~~ 288 (523)
+...-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 85443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.061 Score=49.37 Aligned_cols=156 Identities=10% Similarity=-0.040 Sum_probs=122.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
.-+-..+--.|+-+.+..+...... .|...-+..+. ...++|++.+|+..|++...- -+||..+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk------------~~~~~g~~~~A~~~~rkA~~l-~p~d~~~ 136 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGK------------NQIRNGNFGEAVSVLRKAARL-APTDWEA 136 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHH------------HHHHhcchHHHHHHHHHHhcc-CCCChhh
Confidence 4455666667887777777766432 34444555666 888999999999999998764 3578899
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
|+.+--+|.+.|+++.|..-|.+..+.- ..+....|.|--.|.-.|+. +.|..++......
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-----------------~~~p~~~nNlgms~~L~gd~--~~A~~lll~a~l~ 197 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELA-----------------PNEPSIANNLGMSLLLRGDL--EDAETLLLPAYLS 197 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhc-----------------cCCchhhhhHHHHHHHcCCH--HHHHHHHHHHHhC
Confidence 9999999999999999999999988732 22446678888889999999 9999999988754
Q ss_pred cCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 345 ~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
-.-|...-..+..+.+..|++++|.++...-
T Consensus 198 --~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 198 --PAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred --CCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 2336777778889999999999999987653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.064 Score=54.53 Aligned_cols=202 Identities=14% Similarity=0.128 Sum_probs=129.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHH
Q 035847 34 KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV 113 (523)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~ 113 (523)
+.|++..|.-.|+..++.. .-++..|--|=.....+++-..|+..+.+-.+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd--------------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld------------- 349 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD--------------PQHAEAWQKLGITQAENENEQNAISALRRCLELD------------- 349 (579)
T ss_pred hcCCchHHHHHHHHHHhhC--------------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-------------
Confidence 4455555555555555442 1256777777777777777777777777766644
Q ss_pred HHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc-----------------------cccccCchhhHhhH
Q 035847 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK-----------------------DFSNLSLLKHGKEI 170 (523)
Q Consensus 114 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~-----------------------~~~~~~~~~~~~~~ 170 (523)
+-+..+.-+|--.|...|.=..|+..+++- ...+...+..-.++
T Consensus 350 -------------P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~ 416 (579)
T KOG1125|consen 350 -------------PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQEL 416 (579)
T ss_pred -------------CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHH
Confidence 112333333334444444444444444441 00111111222233
Q ss_pred hhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHH
Q 035847 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247 (523)
Q Consensus 171 ~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~ 247 (523)
|-.+....+..+|..+++.|--.|--.|+++.|...|+... +| |-..||-|=. .++...+.++|+
T Consensus 417 fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGA------------tLAN~~~s~EAI 484 (579)
T KOG1125|consen 417 FLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGA------------TLANGNRSEEAI 484 (579)
T ss_pred HHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhH------------HhcCCcccHHHH
Confidence 33333443656788888899888999999999999999765 35 6678999999 888899999999
Q ss_pred HHHHHHHhcCCCCCH--HHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 248 EFFSRMIQTDMQPNT--ISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 248 ~lf~~M~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.-|++.++ ++|+- +-|| |--+|.+.|.+++|.+.+=..+.
T Consensus 485 sAY~rALq--LqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 485 SAYNRALQ--LQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHh--cCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999987 57764 3455 44478999999999887655443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.012 Score=50.32 Aligned_cols=100 Identities=15% Similarity=-0.013 Sum_probs=72.6
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
+..+-..+.+.|++++|...|+. .-. --..+..+|..+-..+.+.|++++|...|+...+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~-------------------al~-~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSW-------------------LVM-AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-------------------HHH-cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44566777888888888888887 322 1233567788888888888888888888887654
Q ss_pred ---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 213 ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 213 ---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
.+...|..+-. .+.+.|++++|...|+...+ +.|+...+.
T Consensus 87 l~p~~~~a~~~lg~------------~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 87 LDASHPEPVYQTGV------------CLKMMGEPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred cCCCCcHHHHHHHH------------HHHHcCCHHHHHHHHHHHHH--hCCCChHHH
Confidence 35567777777 77788888888888888776 346554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.17 Score=53.68 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=131.7
Q ss_pred CcchHHHHHH--hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 21 CTVTYALIFQ--RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 21 ~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
|..|-..+++ .|...|+.+.|.+-...++ +-..|..|-+.|++..+++-|.-.+..|..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------------------S~~vW~nmA~McVkT~RLDVAkVClGhm~~ 785 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------------------SDSVWDNMASMCVKTRRLDVAKVCLGHMKN 785 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------------------hhHHHHHHHHHhhhhccccHHHHhhhhhhh
Confidence 5566666663 4567788888877665543 457799999999999999999888888765
Q ss_pred cc------------------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccc
Q 035847 99 EG------------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160 (523)
Q Consensus 99 ~g------------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 160 (523)
.. +.-.....|.+++|++++.+-.+.. .|=..|-..|.+++|.++-+.
T Consensus 786 aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~----- 851 (1416)
T KOG3617|consen 786 ARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAET----- 851 (1416)
T ss_pred hhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhh-----
Confidence 32 2222345566666666666655432 244556666777777776554
Q ss_pred cCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-------------------------CCCh
Q 035847 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-------------------------QKHL 215 (523)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~-------------------------~~~~ 215 (523)
-. .+.. ..||.--..-+-..+|++.|.+.|+.-. +|..
T Consensus 852 --------------~D--RiHL-r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L 914 (1416)
T KOG3617|consen 852 --------------KD--RIHL-RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESL 914 (1416)
T ss_pred --------------cc--ceeh-hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHH
Confidence 11 1111 1133322333333455555555554332 1222
Q ss_pred hh-HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 216 VS-WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 216 ~t-~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
.. |...|. ..|+.+.|+.+|...+ -|-+++...|-.|+.++|-+|-++--
T Consensus 915 ~~WWgqYlE---------------S~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~esg----- 965 (1416)
T KOG3617|consen 915 YSWWGQYLE---------------SVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEESG----- 965 (1416)
T ss_pred HHHHHHHHh---------------cccchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhcc-----
Confidence 11 222222 4577777777776543 24456666677777777777654321
Q ss_pred chHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhH
Q 035847 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342 (523)
Q Consensus 295 ~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~ 342 (523)
|....-.|-..|-..|++ .+|..+|.+.+
T Consensus 966 -----------------d~AAcYhlaR~YEn~g~v--~~Av~FfTrAq 994 (1416)
T KOG3617|consen 966 -----------------DKAACYHLARMYENDGDV--VKAVKFFTRAQ 994 (1416)
T ss_pred -----------------cHHHHHHHHHHhhhhHHH--HHHHHHHHHHH
Confidence 334444566777777777 77887776554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.012 Score=49.58 Aligned_cols=104 Identities=13% Similarity=-0.012 Sum_probs=70.6
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
......+...+.+.|++++|...|+. ... ....+...+..+-..|.+.|+.++|...|+.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~-------------------~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQL-------------------LAA-YDPYNSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHH-------------------HHH-hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777788888888888877 333 2233566777778888888888888888876
Q ss_pred CCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHH
Q 035847 210 IKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267 (523)
Q Consensus 210 m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ 267 (523)
..+ .+..+|..+-. .|...|++++|+..|+...+. .|+...+..
T Consensus 77 ~~~~~p~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 123 (135)
T TIGR02552 77 AAALDPDDPRPYFHAAE------------CLLALGEPESALKALDLAIEI--CGENPEYSE 123 (135)
T ss_pred HHhcCCCChHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHh--ccccchHHH
Confidence 542 34455655555 677788888888888877663 455555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.025 Score=51.20 Aligned_cols=99 Identities=10% Similarity=0.039 Sum_probs=67.5
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHH-HHhcCC-
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM-FIKCGR- 145 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~- 145 (523)
.|...|..+-..|...|++++|+..|++..+.. +.+..++..+-.+ |...|+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------------------------P~~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--------------------------GENAELYAALATVLYYQAGQH 124 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhcCCC
Confidence 356677777777777777777777776665532 3356666666665 466666
Q ss_pred -HHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 146 -MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 146 -~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
.++|..++++ ... .-.-+..++..+-..+.+.|++++|...|+.+.+
T Consensus 125 ~~~~A~~~l~~-------------------al~-~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 125 MTPQTREMIDK-------------------ALA-LDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred CcHHHHHHHHH-------------------HHH-hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4788888887 332 1223566777788888888888888888887753
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0079 Score=51.42 Aligned_cols=102 Identities=11% Similarity=-0.117 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
+..+-..+.+.|++++|+..|+...... +.+..+|..+-..+.+.|++++|...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~ 80 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--------------------------PWSWRAHIALAGTWMMLKEYTTAINF 80 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455666777888888888887766643 45777888888899999999999999
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHH
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNA 220 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~ 220 (523)
|++ .-. --..+...+..+-.++.+.|+.++|...|+... .|+-..|..
T Consensus 81 y~~-------------------Al~-l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 81 YGH-------------------ALM-LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSE 130 (144)
T ss_pred HHH-------------------HHh-cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 988 322 223467788888888999999999999998764 355544443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0056 Score=48.53 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=50.5
Q ss_pred cCChHHHHHHHHHHHHhcC-CCCceeHhHHHHHHHhcCC--------HHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 108 LKDHRVGKDVYDYMISIKF-EGNACVKRPVLDMFIKCGR--------MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~--------~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
.+++...-.+|..+++.|+ .|++.+||.++.+.++..- +-..+.+|+. ++..
T Consensus 38 ~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqD------------------iL~~- 98 (120)
T PF08579_consen 38 NEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQD------------------ILSN- 98 (120)
T ss_pred hcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHH------------------HHHh-
Confidence 3455555555555555668 8999999999999887632 3445556666 3444
Q ss_pred CCCCchhHHHHHHHHHHh
Q 035847 179 DLESDLLVNNSLMDFYAK 196 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k 196 (523)
+++|+..+||.++..+.+
T Consensus 99 ~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 99 KLKPNDETYNIVLGSLLK 116 (120)
T ss_pred ccCCcHHHHHHHHHHHHH
Confidence 899999999999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.072 Score=53.18 Aligned_cols=140 Identities=8% Similarity=0.058 Sum_probs=92.1
Q ss_pred CchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh-hhHHHHHHhhhhcCCccccchhh
Q 035847 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL-VSWNAMLAGYALGGFREEITGFT 238 (523)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~-~t~~~li~~~~~~g~~~~i~~~~ 238 (523)
+..+.++......++. .+-|+.......+.+.+.++..+|.+.|+.+.. |+. ..+-.+-. +|.
T Consensus 320 ~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~------------all 385 (484)
T COG4783 320 GQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ------------ALL 385 (484)
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH------------HHH
Confidence 4444454444444443 233455556667888888888888888887753 552 34444555 677
Q ss_pred ccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHH
Q 035847 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNS 318 (523)
Q Consensus 239 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~ 318 (523)
+.|++.+|+.++++.... .+-|...|..|-.+|...|+..++..-..
T Consensus 386 ~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A-------------------------------- 432 (484)
T COG4783 386 KGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA-------------------------------- 432 (484)
T ss_pred hcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH--------------------------------
Confidence 788888888888887664 34577888888888888888777665433
Q ss_pred HHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHH
Q 035847 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354 (523)
Q Consensus 319 li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty 354 (523)
.+|...|++ ++|...+...++. ++++..++
T Consensus 433 --E~~~~~G~~--~~A~~~l~~A~~~--~~~~~~~~ 462 (484)
T COG4783 433 --EGYALAGRL--EQAIIFLMRASQQ--VKLGFPDW 462 (484)
T ss_pred --HHHHhCCCH--HHHHHHHHHHHHh--ccCCcHHH
Confidence 346677888 8888888777764 34444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.011 Score=59.37 Aligned_cols=92 Identities=13% Similarity=0.003 Sum_probs=53.2
Q ss_pred HHHHhhccCChHHHHHHHHHHHHh--cCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISI--KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
++..+....+++.++.++.+.... ....-..|..++|+.|.+.|..+.++.++.. -...
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n-------------------~~~y 132 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKN-------------------RLQY 132 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhC-------------------hhhc
Confidence 555555555666666655555543 1212233445666666666666666666665 4444
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|+-||..++|.||+.+.+.|++..|.+|...|.
T Consensus 133 GiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 133 GIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred ccCCChhhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 666666666666666666666666666655543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.011 Score=56.83 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=99.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHcc-----HHHHhh-----ccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----VYKACS-----ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----ll~~~~-----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (523)
.+|..+|+..-+.+..+.|..+|.+.++.+ +.-+++ ..++.+.|..||+...+. +..+...|..-++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 478899999999999999999999988665 333333 346777799999999877 678889999999999
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc---hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD---LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL 215 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d---~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~ 215 (523)
.+.|+.+.|..+|++ .-. .+.++ ..+|...++.=.+.|+++.+.++.+++.+ |+.
T Consensus 81 ~~~~d~~~aR~lfer-------------------~i~-~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 81 IKLNDINNARALFER-------------------AIS-SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHTT-HHHHHHHHHH-------------------HCC-TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHhCcHHHHHHHHHH-------------------HHH-hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999 222 22222 35999999999999999999999888764 444
Q ss_pred hhHHHHHH
Q 035847 216 VSWNAMLA 223 (523)
Q Consensus 216 ~t~~~li~ 223 (523)
.+...++.
T Consensus 141 ~~~~~f~~ 148 (280)
T PF05843_consen 141 NSLELFSD 148 (280)
T ss_dssp -HHHHHHC
T ss_pred hHHHHHHH
Confidence 44444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.91 Score=51.60 Aligned_cols=260 Identities=12% Similarity=0.039 Sum_probs=162.7
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC----cchHHHHHHHHHhcCCchHHHHHHHHhhHc----c--
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN----VFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----G-- 100 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-- 100 (523)
.+...|+++.|...++.....-. ..+ ...++.+-..+...|++++|...+.+.... |
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~-------------~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~ 527 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELP-------------LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY 527 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCC-------------CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch
Confidence 34468899999998888765311 111 234566666777899999999999877542 1
Q ss_pred ---------HHHHhhccCChHHHHHHHHHHHHh----cCCC---CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCch
Q 035847 101 ---------VYKACSELKDHRVGKDVYDYMISI----KFEG---NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL 164 (523)
Q Consensus 101 ---------ll~~~~~~~~~~~a~~~~~~m~~~----g~~p---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~ 164 (523)
+-..+...|+++.|.+.++..... |... ....+..+-..+...|++++|...++++
T Consensus 528 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a-------- 599 (903)
T PRK04841 528 HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG-------- 599 (903)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh--------
Confidence 344566789999999988876653 2111 1223444555677789999999998881
Q ss_pred hhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----C-ChhhHHH-----HHHhhhhcCCcccc
Q 035847 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ----K-HLVSWNA-----MLAGYALGGFREEI 234 (523)
Q Consensus 165 ~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~----~-~~~t~~~-----li~~~~~~g~~~~i 234 (523)
..+ ....+.......+..+...+...|+.+.|.+.++.... . ....+.. .+.
T Consensus 600 ---l~~----~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~----------- 661 (903)
T PRK04841 600 ---LEV----LSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI----------- 661 (903)
T ss_pred ---HHh----hhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH-----------
Confidence 010 01102111234455566778889999999888876532 1 1111211 112
Q ss_pred chhhccCCchHHHHHHHHHHhcCCCCCHH---HHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCC
Q 035847 235 TGFTQYGDGETALEFFSRMIQTDMQPNTI---SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT 311 (523)
Q Consensus 235 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p 311 (523)
.+...|+.+.|.+++............. .+..+..++...|+.++|...+.......-.. +..+
T Consensus 662 -~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~------------g~~~ 728 (903)
T PRK04841 662 -YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL------------RLMS 728 (903)
T ss_pred -HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------CchH
Confidence 4456789999999987765422211111 13445566778899999999988876632110 1111
Q ss_pred -CcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 312 -GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 312 -~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
...+...+-.+|.+.|+. ++|...+.+..+.
T Consensus 729 ~~a~~~~~la~a~~~~G~~--~~A~~~L~~Al~l 760 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRK--SEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Confidence 123455667788899999 9999999988764
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.012 Score=48.78 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhH-HHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHH
Q 035847 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA-LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339 (523)
Q Consensus 261 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~-li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~ 339 (523)
|..++..+|-++++.|+++....+.+..- |+.++...-.. +.....+.|+..+-.+++.+|+..|++ ..|+++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i--~~al~~vd 76 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDI--FSALKLVD 76 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccH--HHHHHHHH
Confidence 56789999999999999999998886543 44433211111 111113479999999999999999999 99999999
Q ss_pred HhHHhcCCccCHhHHHHHHHHHHh
Q 035847 340 MMKKEYNMEPAMEQYCCMVDLLAR 363 (523)
Q Consensus 340 ~m~~~~g~~p~~~ty~~li~~~~~ 363 (523)
...+.|++.-+...|..|+.-...
T Consensus 77 ~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 77 FFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999899999999985543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.037 Score=47.29 Aligned_cols=117 Identities=13% Similarity=0.094 Sum_probs=83.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCc--eeHhHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNA--CVKRPV 136 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l 136 (523)
..|..++..+ ..++...+...++.+.... +-..+...|++++|...|+.+....-.|+. ...-.|
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4456666666 3677777777777776654 556677789999999999998887623321 234446
Q ss_pred HHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 137 LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 137 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
-..+...|++++|+..++. ... -......+...-+.|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~-------------------~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQ-------------------IPD--EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHh-------------------ccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7788889999999999876 333 223445677788899999999999998874
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.015 Score=44.40 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
|..+...+.+.|++++|+..|++..+.. +.+..++..+...|...|++++|...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~ 56 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--------------------------PDNADAYYNLAAAYYKLGKYEEALED 56 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--------------------------CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666677777777776655432 33346677788888888999999999
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|+. ... -...+..++..+...+...|+.+.|...|....
T Consensus 57 ~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 57 YEK-------------------ALE-LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHH-------------------HHh-CCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 888 332 123344677888888889999999988887643
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.018 Score=48.46 Aligned_cols=98 Identities=12% Similarity=-0.064 Sum_probs=70.9
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+......+...+.+.|++++|.+.|+.....+ +.+...+..+-..|.+.|+++.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------p~~~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------------------------PYNSRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHHHHHHH
Confidence 33445556667777788888888887765543 4466778888888888899999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
|...|++ ... ....+..++..+-..|...|+.++|...|+...+
T Consensus 70 A~~~~~~-------------------~~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 70 AIDAYAL-------------------AAA-LDPDDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHH-------------------HHh-cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988888 332 2233566777777888888999999988887653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.1 Score=48.42 Aligned_cols=133 Identities=15% Similarity=0.106 Sum_probs=85.9
Q ss_pred HHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCh
Q 035847 201 KVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278 (523)
Q Consensus 201 ~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~ 278 (523)
-..+..|...+ ++|-.+|-+++..|... .--+.++++-....++.|.+-|+.-|..+|+.||+.+-+..-.
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~-------sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi 123 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEK-------SVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI 123 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHh-------hhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc
Confidence 33466677666 67888888888743321 1123466666777777888888888888888887776553221
Q ss_pred hHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHH
Q 035847 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358 (523)
Q Consensus 279 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li 358 (523)
|. ..+-...--|-+.. +=+..++++|... |+.||-++-..||
T Consensus 124 --------------------------------P~-nvfQ~~F~HYP~QQ----~C~I~vLeqME~h-GVmPdkE~e~~lv 165 (406)
T KOG3941|consen 124 --------------------------------PQ-NVFQKVFLHYPQQQ----NCAIKVLEQMEWH-GVMPDKEIEDILV 165 (406)
T ss_pred --------------------------------cH-HHHHHHHhhCchhh----hHHHHHHHHHHHc-CCCCchHHHHHHH
Confidence 11 01111111222222 5588999999876 9999999999999
Q ss_pred HHHHhhCCH-HHHHHHHHhCC
Q 035847 359 DLLARAGQF-DDTLNFMKKMP 378 (523)
Q Consensus 359 ~~~~~~g~~-~~A~~~~~~m~ 378 (523)
++++|.+.. .+..+++--||
T Consensus 166 n~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhccccccHHHHHHHHHhhh
Confidence 999998874 44555544454
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.075 Score=57.42 Aligned_cols=66 Identities=11% Similarity=-0.027 Sum_probs=36.2
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...+-.|-......|.+++|..+++...+.- .-+...+-.+...+.+.+++++|+..+++.....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------------Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF--------------PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 34445555555555666666666666555442 1134455555666666666666666666555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.62 Score=45.47 Aligned_cols=79 Identities=13% Similarity=0.067 Sum_probs=42.0
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 035847 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270 (523)
Q Consensus 191 i~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 270 (523)
|.-+...|....|.++-.+.+-||-.-|-..|. ++++.++|++-.++-.. +-+++-|-.++.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~------------aLa~~~~w~eL~~fa~s------kKsPIGyepFv~ 245 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIK------------ALAENKDWDELEKFAKS------KKSPIGYEPFVE 245 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHH------------HHHhcCCHHHHHHHHhC------CCCCCChHHHHH
Confidence 444445566666666666555566666666666 55555555544443221 112355555555
Q ss_pred HhhccCChhHHHHHHHH
Q 035847 271 ACAQVKGFKLGKEIHGY 287 (523)
Q Consensus 271 a~~~~g~~~~a~~i~~~ 287 (523)
+|.+.|...+|..+...
T Consensus 246 ~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHCCCHHHHHHHHHh
Confidence 66565655555555444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.1 Score=44.50 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=86.8
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPN--TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~ 313 (523)
.+ ..++...+...++.+....-.-. ....-.+-..+...|++++|...++.+....-.++. -.
T Consensus 21 ~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l--------------~~ 85 (145)
T PF09976_consen 21 AL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL--------------KP 85 (145)
T ss_pred HH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH--------------HH
Confidence 55 47889999999999988632211 122223446677899999999999999987622221 11
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
...-.|...+...|+. ++|+..++..... ......+...-+.|.+.|+.++|...+++
T Consensus 86 ~a~l~LA~~~~~~~~~--d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 86 LARLRLARILLQQGQY--DEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2344577888899999 9999999775432 33455677788899999999999998875
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.94 Score=50.04 Aligned_cols=275 Identities=8% Similarity=0.008 Sum_probs=140.4
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCce-eHhHHHHHHHhcCC
Q 035847 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNAC-VKRPVLDMFIKCGR 145 (523)
Q Consensus 67 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~ 145 (523)
..+...|..||..|...+++++|+++.++-.+.. |+.. .|-.+-..|.+.++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---------------------------P~~i~~yy~~G~l~~q~~~ 80 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH---------------------------KKSISALYISGILSLSRRP 80 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------------------------CcceehHHHHHHHHHhhcc
Confidence 3467889999999999999999999988655432 2211 11111123344444
Q ss_pred HHHHHHHhhhc-cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHH
Q 035847 146 MEMASGEFEEK-DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAM 221 (523)
Q Consensus 146 ~~~A~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~l 221 (523)
.+++..+ .-. .......+.....+... +.. ..-+...+-.|-.+|-+.|+.++|..++++..+ .|...-|-+
T Consensus 81 ~~~~~lv-~~l~~~~~~~~~~~ve~~~~~-i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~ 156 (906)
T PRK14720 81 LNDSNLL-NLIDSFSQNLKWAIVEHICDK-ILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKL 156 (906)
T ss_pred hhhhhhh-hhhhhcccccchhHHHHHHHH-HHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHH
Confidence 4333333 100 00011111111111111 111 112233556666777777777777777777654 344555656
Q ss_pred HHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCc-hH--H
Q 035847 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL-ST--G 298 (523)
Q Consensus 222 i~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~-~~--~ 298 (523)
-. .|+.. ++++|.+++...... +....+...+.+++..+......- +. .
T Consensus 157 AY------------~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~ 208 (906)
T PRK14720 157 AT------------SYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLR 208 (906)
T ss_pred HH------------HHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHH
Confidence 55 55555 666666666655443 222334444444444444322110 00 0
Q ss_pred HHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc-CHhHHHHHHHHHH-hhCCHHHHHHHHHh
Q 035847 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP-AMEQYCCMVDLLA-RAGQFDDTLNFMKK 376 (523)
Q Consensus 299 ~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p-~~~ty~~li~~~~-~~g~~~~A~~~~~~ 376 (523)
+-+.+...-+...-+.++-.+-..|-...++ +++..+|+...+. .| |.....-++..|. +-++.....++++.
T Consensus 209 i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~--~~~i~iLK~iL~~---~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~ 283 (906)
T PRK14720 209 IERKVLGHREFTRLVGLLEDLYEPYKALEDW--DEVIYILKKILEH---DNKNNKAREELIRFYKEKYKDHSLLEDYLKM 283 (906)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhhhhh--hHHHHHHHHHHhc---CCcchhhHHHHHHHHHHHccCcchHHHHHHH
Confidence 1111111112234456667777888888889 9999999988853 34 3556666666664 22233333333333
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 377 MPFEPSSAEPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 377 m~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
-++.. ...++..+..-+++.+.+.+.+-.
T Consensus 284 s~l~~---~~~~~~~~i~~fek~i~f~~G~yv 312 (906)
T PRK14720 284 SDIGN---NRKPVKDCIADFEKNIVFDTGNFV 312 (906)
T ss_pred hcccc---CCccHHHHHHHHHHHeeecCCCEE
Confidence 33221 124455666666777777666543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.16 Score=55.75 Aligned_cols=233 Identities=9% Similarity=0.076 Sum_probs=148.9
Q ss_pred CCCC-CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH-----HhcCCCCCCcchHHHHHHHHHhcCCchHHH
Q 035847 17 NPDE-CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-----MFEKMPERNVFSWTSMMGMYNVLGYYEEIV 90 (523)
Q Consensus 17 g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-----~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 90 (523)
++.| +...+..|+..+-..+++++|.++.+...+.....-.+.+ .|..-+..|.... .++.......++.-+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVE 103 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHH
Confidence 3444 4567888999998999999999998866554321111111 1212111222222 5555566666664444
Q ss_pred HHHHHhhHcc--------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc--cccc
Q 035847 91 NLFYLLIDEG--------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK--DFSN 160 (523)
Q Consensus 91 ~l~~~m~~~g--------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~--~~~~ 160 (523)
.+...|...+ +..+|.+.|+.+++.++++++++.. .-|+.+.|.+--.|+.. ++++|..++.+| ....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 4445555444 6777788999999999999999887 56788999999999999 999999999885 1222
Q ss_pred cCchhhHhhHhhhhh------------------hcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHH
Q 035847 161 LSLLKHGKEIHPHHL------------------KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWN 219 (523)
Q Consensus 161 ~~~~~~~~~~~~~~~------------------~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~ 219 (523)
........+++..+. .+.|...-+.++-.|-..|-+..+++++..+|..+.+ .|.-...
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence 233444444444333 3334344445555666778888899999999988764 4556667
Q ss_pred HHHHhhhhcCCccc--------cchhhcc-CCchHHHHHHHHH
Q 035847 220 AMLAGYALGGFREE--------ITGFTQY-GDGETALEFFSRM 253 (523)
Q Consensus 220 ~li~~~~~~g~~~~--------i~~~~~~-g~~~~A~~lf~~M 253 (523)
-++.+|. ..+.+. +.+..+. ..+..|+.-|+..
T Consensus 262 ~l~~~y~-~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~ 303 (906)
T PRK14720 262 ELIRFYK-EKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKN 303 (906)
T ss_pred HHHHHHH-HHccCcchHHHHHHHhccccCCccHHHHHHHHHHH
Confidence 7777665 222222 4455555 4457777777765
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.83 Score=49.80 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=91.6
Q ss_pred chHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc
Q 035847 86 YEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK 156 (523)
Q Consensus 86 ~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~ 156 (523)
...|+..|-+-.+.. +-..|+...|...|+.-|....+.. ..|...+.+..+.|+...+++.|..+.-.+
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 555555554444333 2233333335566777777665543 346667888889999999998888875441
Q ss_pred ------------------cccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhh
Q 035847 157 ------------------DFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217 (523)
Q Consensus 157 ------------------~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t 217 (523)
..-..+....+..-+.... ...| |...|..|..+|.++|+...|.++|+....-+..+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL---RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHh---cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 1111122222222222222 3344 67789999999999999999999998776533322
Q ss_pred -HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 218 -WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 218 -~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
|.-.-.+- .-+..|.+.+|+..+.....
T Consensus 630 ~y~~fk~A~----------~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 630 KYGRFKEAV----------MECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHH----------HHHHhhhHHHHHHHHHHHHH
Confidence 22111100 23567778888777766543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.1 Score=43.94 Aligned_cols=199 Identities=11% Similarity=0.013 Sum_probs=126.5
Q ss_pred HHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcC-CchHHHHHHHHhhHcc------
Q 035847 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLG-YYEEIVNLFYLLIDEG------ 100 (523)
Q Consensus 28 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g------ 100 (523)
+-..+...+..+.|..+.+.+++.. .-+..+|+.--..+...| .+++++..++++.+..
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln--------------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa 108 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN--------------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI 108 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--------------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH
Confidence 3344445567777777777777653 224556765555555666 5799999998887654
Q ss_pred ---HHHHhhccCC--hHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhh
Q 035847 101 ---VYKACSELKD--HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175 (523)
Q Consensus 101 ---ll~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~ 175 (523)
---.+.+.++ .+.+.++.+.+++.. +-|..+|+..-..+.+.|++++|+..+++ +
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~-------------------~ 168 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQ-------------------L 168 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHH-------------------H
Confidence 1111223343 356778888888664 45778899888899999999999999998 3
Q ss_pred hcCCCCCchhHHHHHHHHHHhc---CCh----HHHHHHHhcCC--C-CChhhHHHHHHhhhhcCCccccchhhcc----C
Q 035847 176 KKDDLESDLLVNNSLMDFYAKC---RYL----KVAHCKFSKIK--Q-KHLVSWNAMLAGYALGGFREEITGFTQY----G 241 (523)
Q Consensus 176 ~~~g~~~d~~~~~~li~~~~k~---g~~----~~A~~vf~~m~--~-~~~~t~~~li~~~~~~g~~~~i~~~~~~----g 241 (523)
-. .-..|...|+-....+.+. |.. +++........ . .|..+|+-+-. .+... +
T Consensus 169 I~-~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~------------ll~~~~~~l~ 235 (320)
T PLN02789 169 LE-EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRG------------LFKDDKEALV 235 (320)
T ss_pred HH-HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHH------------HHhcCCcccc
Confidence 22 1233556666665555444 222 34444443332 2 36678998887 44442 4
Q ss_pred CchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 035847 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274 (523)
Q Consensus 242 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 274 (523)
...+|.+.+.+..+.+ ..+......|++.++.
T Consensus 236 ~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 236 SDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4566888888866643 2356777788888876
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.17 Score=47.38 Aligned_cols=263 Identities=12% Similarity=0.100 Sum_probs=150.5
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH-----------------HhcC
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-----------------MFEK 64 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~f~~ 64 (523)
++.+|++++..-.++.. .+....+.|-.+|-...++..|-..++++...-.....+.. +...
T Consensus 25 ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35677777776665532 26667777777777888888888888887654321111110 1111
Q ss_pred CC-CCCcchHHHHHHHH--HhcCCchHHHHHHHHhhHcc----HH-HHh--hccCChHHHHHHHHHHHHh-cCCCCceeH
Q 035847 65 MP-ERNVFSWTSMMGMY--NVLGYYEEIVNLFYLLIDEG----VY-KAC--SELKDHRVGKDVYDYMISI-KFEGNACVK 133 (523)
Q Consensus 65 ~~-~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g----ll-~~~--~~~~~~~~a~~~~~~m~~~-g~~p~~~~~ 133 (523)
|. .++...-..-+.+- -+.+++..+..+.++...+| ++ .+| .+.|+.+.|.+-|....+. |+.| ...|
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAY 182 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAY 182 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHH
Confidence 11 12221111111111 23466666666666666544 22 233 3678999999988887765 4554 5678
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhh---hhcCCCCC----c--hhHHHHHH-------HHHHhc
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH---LKKDDLES----D--LLVNNSLM-------DFYAKC 197 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~----d--~~~~~~li-------~~~~k~ 197 (523)
|.-+.-| +.|+.+.|++...+. ++.|..-|... |...|+.. | +..-++++ ..+-+.
T Consensus 183 niALaHy-~~~qyasALk~iSEI-------ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 183 NLALAHY-SSRQYASALKHISEI-------IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred HHHHHHH-hhhhHHHHHHHHHHH-------HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 7666544 567889999887771 12222222110 11111111 1 11122333 345677
Q ss_pred CChHHHHHHHhcCCC-----CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 035847 198 RYLKVAHCKFSKIKQ-----KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272 (523)
Q Consensus 198 g~~~~A~~vf~~m~~-----~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 272 (523)
|+.+.|.+-+-.|+- -|.+|...+-- . --.+++.+..+-+.-+.+.+. -...||..++-.|
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al------------~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQAL------------M-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHH------------h-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 999999999999973 46666544422 1 124556666555555555432 3467999999999
Q ss_pred hccCChhHHHHHHHHH
Q 035847 273 AQVKGFKLGKEIHGYV 288 (523)
Q Consensus 273 ~~~g~~~~a~~i~~~~ 288 (523)
|+..-++.|-.++.+-
T Consensus 321 CKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAEN 336 (459)
T ss_pred hhhHHHhHHHHHHhhC
Confidence 9999999988886553
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.033 Score=42.31 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=71.0
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
+..+...+...|++++|..+|++ ... -...+..++..+...|...|+.++|.+.|+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEK-------------------ALE-LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHH-------------------HHh-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788889999999999988 332 1223446788888999999999999999987543
Q ss_pred ---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 213 ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 213 ---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.+..+|..+.. .+...|++++|...|.+..+
T Consensus 63 ~~~~~~~~~~~~~~------------~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 63 LDPDNAKAYYNLGL------------AYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred CCCcchhHHHHHHH------------HHHHHHhHHHHHHHHHHHHc
Confidence 34457777777 88889999999999988765
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.042 Score=52.79 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=102.6
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
.+|..+|+..-+.+.++.|..+|.+| .+...+..++.+..+++..++ .++.+.|.+||+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a------------------~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~g 62 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRA------------------RKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERG 62 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH------------------HcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 47888999999999999999999991 333234566666666665432 46677799999987
Q ss_pred CC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH---HHHHHHHHHhhccCChhHHHHH
Q 035847 211 KQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT---ISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 211 ~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~i 284 (523)
.+ .+..-|..-|. -+.+.|+.+.|-.+|++.... +.++. ..|...++-=.+.|+++...++
T Consensus 63 lk~f~~~~~~~~~Y~~------------~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 63 LKKFPSDPDFWLEYLD------------FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp HHHHTT-HHHHHHHHH------------HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred HHHCCCCHHHHHHHHH------------HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 64 57778888888 888999999999999998865 33332 4899999888889999999999
Q ss_pred HHHHHHhcCCchHHHHhHHHhhh
Q 035847 285 HGYVLRHHIQLSTGVGIALISIQ 307 (523)
Q Consensus 285 ~~~~~~~g~~~~~~~~~~li~~y 307 (523)
...+.+. .|+......+++-|
T Consensus 130 ~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 130 EKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHHHHH--hhhhhHHHHHHHHh
Confidence 9888774 33333444455544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.00 E-value=3 Score=45.17 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCch-HHHHHHHHHhHHhcCCccCHhHH-HHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 316 WNSLIDMYGRCGAIQK-NEGWRYFEMMKKEYNMEPAMEQY-CCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~-~~a~~~~~~m~~~~g~~p~~~ty-~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
-|.||+.|-+.++.+. -+|+-+++.-.. ..|...++ -.+|..|+-.|-+..|.++++.+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt---~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLd 500 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLT---KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLD 500 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhh---cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcc
Confidence 3577778887777611 233333333222 23444333 357788888899999999988875
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.80 E-value=2.1 Score=41.81 Aligned_cols=103 Identities=12% Similarity=0.138 Sum_probs=62.3
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
-+...|+...|.++-++.. .||..-|-..|.+++..+++++-.++-.. +...+-
T Consensus 186 ~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----------------------kKsPIG 239 (319)
T PF04840_consen 186 KLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----------------------KKSPIG 239 (319)
T ss_pred HHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----------------------CCCCCC
Confidence 5555666666666655542 36666677777777777777665554211 123366
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
|-.++..|.+.|.. .+|..+...+ ++.--+..|.+.|++.+|.+.--+.
T Consensus 240 yepFv~~~~~~~~~--~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 240 YEPFVEACLKYGNK--KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred hHHHHHHHHHCCCH--HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 77777777777777 6776665542 1234456666777777776665444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.4 Score=43.11 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=57.3
Q ss_pred cCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHHHH
Q 035847 83 LGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
.|++++|.+-|+.|.... +.-..-+.|+.+.|.+.-+..-.. .|. .-.+.+++...+..|+++.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 599999999999997654 444445788888888887776543 454 45788999999999999999999
Q ss_pred hhh
Q 035847 153 FEE 155 (523)
Q Consensus 153 f~~ 155 (523)
.+.
T Consensus 211 vd~ 213 (531)
T COG3898 211 VDA 213 (531)
T ss_pred HHH
Confidence 998
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.84 Score=42.76 Aligned_cols=180 Identities=12% Similarity=0.056 Sum_probs=99.6
Q ss_pred HHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG 144 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 144 (523)
-..+.+.|++++|++.|+++...- +..++-+.++.+.|...++..++.--.....-|.-.+.+.+...
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 444566788889999888887643 44455566666666666666665421111122222222222100
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-------hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhh
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-------LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-------~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t 217 (523)
. ....|.. .........| ...+..+|+-|=...-..+|..-+..+...=..-
T Consensus 119 ~---~~~~~~~------------------~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 119 L---DDSALQG------------------FFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred c---chhhhhh------------------ccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 0 0000000 0000000111 1234555666655555666665555443211111
Q ss_pred HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc--CCCCCHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 035847 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT--DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 218 ~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~ 289 (523)
--.+.. -|.+.|.+..|+.=|+.+.+. +.+......-.+..++...|..++|.++...+.
T Consensus 178 e~~ia~------------~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAE------------YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHH------------HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 112333 688899999999999999873 455566777788899999999999998776554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.38 Score=46.31 Aligned_cols=156 Identities=11% Similarity=0.122 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhcc-CCchHHHHHHHHHHh----cCCC
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY-GDGETALEFFSRMIQ----TDMQ 259 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~-g~~~~A~~lf~~M~~----~g~~ 259 (523)
..|.-.+..|.+.|+...|-+++..+ -. .|-+. |++++|++.|++-.. .| .
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~l-----------A~------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~ 150 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKEL-----------AE------------IYEEQLGDYEKAIEYYQKAAELYEQEG-S 150 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH-----------HH------------HHCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH-----------HH------------HHHHHcCCHHHHHHHHHHHHHHHHHCC-C
Confidence 34555667788888888877776653 23 56666 788888888887654 23 2
Q ss_pred CC--HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcc-hHHHHHHHHHhcCCCchHHHHH
Q 035847 260 PN--TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF-VWNSLIDMYGRCGAIQKNEGWR 336 (523)
Q Consensus 260 p~--~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~-~~n~li~~~~~~g~~~~~~a~~ 336 (523)
|. ..++..+...+.+.|++++|.++++.+.+.-...+.. +.++. .|-..+-++...|++ ..|.+
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~-----------~~~~~~~~l~a~l~~L~~~D~--v~A~~ 217 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL-----------KYSAKEYFLKAILCHLAMGDY--VAARK 217 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT-----------GHHHHHHHHHHHHHHHHTT-H--HHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc-----------chhHHHHHHHHHHHHHHcCCH--HHHHH
Confidence 22 2445667777889999999999999988754332210 11111 122233356667888 89999
Q ss_pred HHHHhHHhc-CCccC--HhHHHHHHHHHHh--hCCHHHHHHHHHhC
Q 035847 337 YFEMMKKEY-NMEPA--MEQYCCMVDLLAR--AGQFDDTLNFMKKM 377 (523)
Q Consensus 337 ~~~~m~~~~-g~~p~--~~ty~~li~~~~~--~g~~~~A~~~~~~m 377 (523)
.|++..... ++..+ ......||.++-. ...+++|..-++.+
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 999887431 23223 3445566666642 44566666666665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.45 Score=44.01 Aligned_cols=119 Identities=11% Similarity=-0.027 Sum_probs=65.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 268 (523)
.-...|++.|+.++|.+.......-+...-|.-|. .+..+.+-|...++.|++- -+..|.+-|
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~--------------lk~~r~d~A~~~lk~mq~i---ded~tLtQL 175 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAALNVQIL--------------LKMHRFDLAEKELKKMQQI---DEDATLTQL 175 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcc---chHHHHHHH
Confidence 33445677777777777777643334443333322 4556677777777777663 245566655
Q ss_pred HHHhhc----cCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 269 LAACAQ----VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 269 l~a~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
-+++.+ .+.+..|.-+|++|-+. ..|+..+-|-+..++...|++ ++|..++++...
T Consensus 176 A~awv~la~ggek~qdAfyifeE~s~k-----------------~~~T~~llnG~Av~~l~~~~~--eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 176 AQAWVKLATGGEKIQDAFYIFEELSEK-----------------TPPTPLLLNGQAVCHLQLGRY--EEAESLLEEALD 235 (299)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHhcc-----------------cCCChHHHccHHHHHHHhcCH--HHHHHHHHHHHh
Confidence 555443 23445555555555431 133444455555555555555 555555555554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.13 Score=41.75 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=68.6
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC--CCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD--DLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
++-.+...+.+.|++++|...|++ .... +.......+..+...+.+.|+++.|...|+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQA-------------------FLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-------------------HHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 455667778888999999999988 3220 1111234566688889999999999999987
Q ss_pred CCC--CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 210 IKQ--KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 210 m~~--~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
... |+ ..++..+.. .+.+.|+.++|...|++.....
T Consensus 65 ~~~~~p~~~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 65 VVKKYPKSPKAPDALLKLGM------------SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHCCCCCcccHHHHHHHH------------HHHHhCChHHHHHHHHHHHHHC
Confidence 653 43 235666666 7778899999999999988763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.24 Score=45.59 Aligned_cols=137 Identities=19% Similarity=0.209 Sum_probs=95.8
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhc---
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK--- 177 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~--- 177 (523)
++...-..+.+.....++..+++..-+-++.....|.++-.+.|+.+.|...|++ +++
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~-------------------vek~~~ 243 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD-------------------VEKVTQ 243 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH-------------------HHHHHh
Confidence 4444555677888888999998876566788888999999999999999999997 322
Q ss_pred --CCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 178 --DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 178 --~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
.++.-+..+.-..-..|.-.++...|.+.|+++.. .|.+.-|.--- ...-.|+..+|++..+.
T Consensus 244 kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL------------cllYlg~l~DAiK~~e~ 311 (366)
T KOG2796|consen 244 KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL------------CLLYLGKLKDALKQLEA 311 (366)
T ss_pred hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH------------HHHHHHHHHHHHHHHHH
Confidence 13333333444444456667889999999988775 34444444322 23346889999999999
Q ss_pred HHhcCCCCCHHHHHHHHH
Q 035847 253 MIQTDMQPNTISLSGVLA 270 (523)
Q Consensus 253 M~~~g~~p~~~t~~~ll~ 270 (523)
|++. .|...+-++++-
T Consensus 312 ~~~~--~P~~~l~es~~~ 327 (366)
T KOG2796|consen 312 MVQQ--DPRHYLHESVLF 327 (366)
T ss_pred Hhcc--CCccchhhhHHH
Confidence 9884 566666555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.66 E-value=3.7 Score=43.71 Aligned_cols=90 Identities=13% Similarity=0.156 Sum_probs=64.9
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHH--HHHhC-CCCCCCC-----
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLN--FMKKM-PFEPSSA----- 384 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~--~~~~m-~~~p~~~----- 384 (523)
..|.-.=..+-..|.. ++|.+.|.... -+.|+ ..+-+++-.++.+.|+..-|.. ++.++ .+.|+..
T Consensus 685 ~~~~~~G~~~~~~~~~--~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQL--EEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred HHHHHhhHHHHHHHhh--HHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3444444556667777 88888887664 45677 5677788888888888777776 66664 5667666
Q ss_pred ------CCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 385 ------EPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 385 ------~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
..|+.+.|...+...+++++.+|.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 788888888888888888887775
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.16 Score=41.09 Aligned_cols=84 Identities=8% Similarity=0.019 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCC--CCceeHhHHH
Q 035847 72 SWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFE--GNACVKRPVL 137 (523)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li 137 (523)
+|-.+...+.+.|++++|.+.|..+.... +...+...|+++.|.+.++.+....-. ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45566778888999999999999887542 667778889999999999998875311 1244677778
Q ss_pred HHHHhcCCHHHHHHHhhh
Q 035847 138 DMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~ 155 (523)
.++.+.|+.++|...+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHHhCChHHHHHHHHH
Confidence 889999999999999998
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.038 Score=40.00 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=47.5
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhH
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSW 218 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~ 218 (523)
.+.|++++|..+|++ ++.. .+-+..++-.+..+|.+.|++++|..+++.+.. |+-..|
T Consensus 2 l~~~~~~~A~~~~~~------------------~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEK------------------ALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHH------------------HHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hhccCHHHHHHHHHH------------------HHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 467888888888888 2332 233677888999999999999999999999874 665666
Q ss_pred HHHHH
Q 035847 219 NAMLA 223 (523)
Q Consensus 219 ~~li~ 223 (523)
..++.
T Consensus 62 ~~l~a 66 (68)
T PF14559_consen 62 QQLLA 66 (68)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
|
... |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.38 Score=49.12 Aligned_cols=223 Identities=11% Similarity=0.065 Sum_probs=147.8
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhH
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLV 186 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~ 186 (523)
.|++.+|.-.|+..++.. +-+...|--|-..-...++-..|...+.+ .+ .+.| |..+
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~r------------------cl---~LdP~Nlea 355 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRR------------------CL---ELDPTNLEA 355 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHH------------------HH---hcCCccHHH
Confidence 356666666666666552 33566777776777777777777777766 12 3455 4667
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-cCCCCCHHHH
Q 035847 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISL 265 (523)
Q Consensus 187 ~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~ 265 (523)
.-+|--.|...|.-..|...|+.-.. +...|--+..+ ...+.++.=+.+.....+.+..++|-++.. .+.++|....
T Consensus 356 LmaLAVSytNeg~q~~Al~~L~~Wi~-~~p~y~~l~~a-~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 356 LMALAVSYTNEGLQNQALKMLDKWIR-NKPKYVHLVSA-GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHH-hCccchhcccc-CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH
Confidence 77788889999999999998886421 00000000000 000000000044455566778888888865 5545666666
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc
Q 035847 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345 (523)
Q Consensus 266 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~ 345 (523)
..|---|--.|.+++|...|+..+.- . +-|-..||-|=..++...+. ++|+.-|.+..
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v--~---------------Pnd~~lWNRLGAtLAN~~~s--~EAIsAY~rAL--- 491 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQV--K---------------PNDYLLWNRLGATLANGNRS--EEAISAYNRAL--- 491 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhc--C---------------CchHHHHHHhhHHhcCCccc--HHHHHHHHHHH---
Confidence 66666677789999999999888752 1 23677899999999999999 99999999887
Q ss_pred CCccC-HhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 346 NMEPA-MEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 346 g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
.++|+ +.....|--.|...|.+++|.+.+-+
T Consensus 492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 46888 44555566688889999999887644
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.42 E-value=2.7 Score=40.42 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=73.5
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc-CChhHHHHHHHHHHHhcCCc-hHHHHhHHHhhhCCCCCc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV-KGFKLGKEIHGYVLRHHIQL-STGVGIALISIQGLGTGS 313 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~p~~ 313 (523)
.|.+.|++..|-+++.++-+ .|-.. |+++.|.+.+....+.--.. .... -.
T Consensus 103 ~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~------------a~ 155 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHS------------AA 155 (282)
T ss_dssp HHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHH------------HH
T ss_pred HHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhh------------HH
Confidence 77788888888777766543 45555 78888888887776531110 1100 12
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcC----CccCHh-HHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCC
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN----MEPAME-QYCCMVDLLARAGQFDDTLNFMKKM-PFEPSS 383 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g----~~p~~~-ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 383 (523)
.++..+...+.+.|++ ++|.++|++.....- .+++.. .|-..+-.+...|+...|.+.+++. ...|.-
T Consensus 156 ~~~~~~A~l~~~l~~y--~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 156 ECLLKAADLYARLGRY--EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHTT-H--HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHHhCCH--HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3566778889999999 999999999876421 122232 3334444666789999999999985 344543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.12 Score=44.22 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=49.7
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
++..+...|+.+.+.++...++... +.|...|..+|.+|...|+...|.++|++ +...+.+..|+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~--------------~~~~l~~elg~ 132 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYER--------------YRRRLREELGI 132 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHH--------------HHHHHHHHHS-
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHH--------------HHHHHHHHhCc
Confidence 5556667888999999888888764 55788999999999999999999999998 22222323388
Q ss_pred CCchhHH
Q 035847 181 ESDLLVN 187 (523)
Q Consensus 181 ~~d~~~~ 187 (523)
.|+..+-
T Consensus 133 ~Ps~~~~ 139 (146)
T PF03704_consen 133 EPSPETR 139 (146)
T ss_dssp ---HHHH
T ss_pred CcCHHHH
Confidence 8876653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.088 Score=43.60 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=59.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
|..++.++|.++++.|+++....+.+.. |+.=+. +-...+. --......|+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~-------WgI~~~------------~~~~~~~---------~~~~spl~Pt~ 52 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV-------WGIDVN------------GKKKEGD---------YPPSSPLYPTS 52 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh-------cCCCCC------------CccccCc---------cCCCCCCCCCH
Confidence 4457778888888888888887777643 222222 1111111 11124577888
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHH-hcCCchHHHHhHHH
Q 035847 263 ISLSGVLAACAQVKGFKLGKEIHGYVLR-HHIQLSTGVGIALI 304 (523)
Q Consensus 263 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~-~g~~~~~~~~~~li 304 (523)
.+..+++.+++..+++..|.++.+...+ .+++.+..+|..|+
T Consensus 53 ~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 53 RLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8888888888888888888888877755 45555444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.051 Score=39.34 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
|+++.|.+++..+.+.. +-+..++-.+...|.+.|++++|..++++
T Consensus 5 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp THHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444331 34777888899999999999999999998
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.23 Score=49.46 Aligned_cols=101 Identities=8% Similarity=0.041 Sum_probs=75.7
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-C
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-H 214 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~ 214 (523)
..+...|++++|...|++ +++. -.-+...|..+-.+|.+.|++++|...++...+ | +
T Consensus 10 ~~a~~~~~~~~Ai~~~~~------------------Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~ 69 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQ------------------AIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL 69 (356)
T ss_pred HHHHHcCCHHHHHHHHHH------------------HHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 445567888888888887 2322 223566888888999999999999999998753 4 4
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 272 (523)
...|..+-. +|.+.|++++|+..|++..+ +.|+...+...+.-|
T Consensus 70 ~~a~~~lg~------------~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 70 AKAYLRKGT------------ACMKLEEYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHH------------HHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 557777777 88899999999999999887 457666666555444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.71 E-value=6.5 Score=41.16 Aligned_cols=98 Identities=9% Similarity=0.213 Sum_probs=67.6
Q ss_pred CCCHHHHH--HHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcc-hHHHHHHHHHhcCCCchHHHH
Q 035847 259 QPNTISLS--GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF-VWNSLIDMYGRCGAIQKNEGW 335 (523)
Q Consensus 259 ~p~~~t~~--~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~-~~n~li~~~~~~g~~~~~~a~ 335 (523)
+|+...|+ .+...+-+.|+++.|...++..+.+ . |+.+ -|-.=-..+...|.+ ++|.
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--T----------------PTliEly~~KaRI~kH~G~l--~eAa 425 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--T----------------PTLIELYLVKARIFKHAGLL--DEAA 425 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--C----------------chHHHHHHHHHHHHHhcCCh--HHHH
Confidence 45554444 5667788899999999999888763 1 2211 233444778889999 9999
Q ss_pred HHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 336 ~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
.++++.++. . .||...=+--..-..|+.+.++|.++.....
T Consensus 426 ~~l~ea~el-D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 426 AWLDEAQEL-D-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHhc-c-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 999988764 2 4554333344455568899999999877764
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.1 Score=39.76 Aligned_cols=80 Identities=18% Similarity=0.110 Sum_probs=53.3
Q ss_pred cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-CCh-hhHHH
Q 035847 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHL-VSWNA 220 (523)
Q Consensus 143 ~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-~~~-~t~~~ 220 (523)
.|+++.|..+|++ +.......++...+-.+-.+|.+.|+.++|..+++.... ++. ...-.
T Consensus 2 ~~~y~~Ai~~~~k------------------~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l 63 (84)
T PF12895_consen 2 QGNYENAIKYYEK------------------LLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYL 63 (84)
T ss_dssp TT-HHHHHHHHHH------------------HHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHH
T ss_pred CccHHHHHHHHHH------------------HHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHH
Confidence 4678888888887 232211122455566689999999999999999988321 222 22223
Q ss_pred HHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 221 MLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 221 li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
+-. ++.+.|++++|++.|++
T Consensus 64 ~a~------------~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 64 LAR------------CLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHH------------HHHHTT-HHHHHHHHHH
T ss_pred HHH------------HHHHhCCHHHHHHHHhc
Confidence 334 78899999999999875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.42 E-value=4.3 Score=42.37 Aligned_cols=183 Identities=9% Similarity=0.017 Sum_probs=95.6
Q ss_pred HHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhcccc
Q 035847 80 YNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159 (523)
Q Consensus 80 ~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 159 (523)
+-++|.-..|+++|.+|+--+...-+...|+.++-+.+..+-.+ ...|+.-=.+.-.++..+|+.++|..+.-+
T Consensus 655 Fk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d---- 728 (1081)
T KOG1538|consen 655 FKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICGD---- 728 (1081)
T ss_pred HHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhhc----
Confidence 34445555555555554433344444445555554444433222 222333334455666778888888776544
Q ss_pred ccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhc
Q 035847 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239 (523)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~ 239 (523)
.+=++....+-..+- ..+..+.-.+-.-+-+...+.-|-++|..|.+ -.+++. .+..
T Consensus 729 -~gW~d~lidI~rkld-----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----~ksiVq------------lHve 785 (1081)
T KOG1538|consen 729 -HGWVDMLIDIARKLD-----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-----LKSLVQ------------LHVE 785 (1081)
T ss_pred -ccHHHHHHHHHhhcc-----hhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----HHHHhh------------heee
Confidence 121222222221111 11233333333334445566777777777653 123555 6667
Q ss_pred cCCchHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035847 240 YGDGETALEFFSRMIQTDMQPNTI-----------SLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 240 ~g~~~~A~~lf~~M~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
.+++.+|+.+-+...+ ..||.+ -|.-.-.||-+.|+-.+|.++++++....+
T Consensus 786 ~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred cccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 7777777777666543 333332 233344677788888888888888876443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.31 E-value=5.4 Score=38.52 Aligned_cols=255 Identities=14% Similarity=0.128 Sum_probs=142.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHH---HHHHhcCChHHHHHHHhcCC-
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM---DFYAKCRYLKVAHCKFSKIK- 211 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li---~~~~k~g~~~~A~~vf~~m~- 211 (523)
|-+.+...|++.+|+.-|.. -++-|+..|-++. ..|...|+-..|..=|+...
T Consensus 44 lGk~lla~~Q~sDALt~yHa-----------------------Ave~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHA-----------------------AVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHH-----------------------HHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 34445556777777777776 3444555555543 34555666655555554443
Q ss_pred -CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 212 -QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 212 -~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
+||-.. +=| +.|. .+.+.|.+++|..=|+...+.. |+.- ....+..+....++-..+..+++.
T Consensus 101 lKpDF~~--ARi----QRg~-----vllK~Gele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 101 LKPDFMA--ARI----QRGV-----VLLKQGELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred cCccHHH--HHH----Hhch-----hhhhcccHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHHHHHHHHH
Confidence 355321 111 1111 4457899999999998887753 3221 122333333333333333333333
Q ss_pred hcCCchHHHHhHHHhhh-CC-CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHH
Q 035847 291 HHIQLSTGVGIALISIQ-GL-GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368 (523)
Q Consensus 291 ~g~~~~~~~~~~li~~y-~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~ 368 (523)
.--.-|....-.+|+.. .+ .-|...|-.=-.+|...|.+ ..|+.=++...+. -.-++.++--+-..+-..|+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~--k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEP--KKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcH--HHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHH
Confidence 21111211111111111 34 34666677778899999998 8887655555432 1334566666778888999999
Q ss_pred HHHHHHHh-CCCCCCCC-----------------------CCCCHHHHHHHHHHHHhhCCC-CCcceeEE---EecCCCC
Q 035847 369 DTLNFMKK-MPFEPSSA-----------------------EPCNPDIAEHAARHLFELEPL-SSGKVHSF---IAGDTSH 420 (523)
Q Consensus 369 ~A~~~~~~-m~~~p~~~-----------------------~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~---~~~~~~~ 420 (523)
.++..+++ +.+.||.. ..+..-.+....+++++.+|. .+..++.| ...+...
T Consensus 241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 99999888 56888876 122222333456777777787 34444444 4455667
Q ss_pred chHHHHHHHHHHH
Q 035847 421 SLVHKISEKLMRL 433 (523)
Q Consensus 421 ~~~~~~~~~l~~l 433 (523)
++..++...-.++
T Consensus 321 ~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 321 EQFGEAIQQCKEV 333 (504)
T ss_pred CCHHHHHHHHHHH
Confidence 7777776444333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.30 E-value=5.4 Score=38.50 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=107.7
Q ss_pred HHHhcCCchHHHHHHHHhhHcc------------------------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHh
Q 035847 79 MYNVLGYYEEIVNLFYLLIDEG------------------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKR 134 (523)
Q Consensus 79 ~~~~~g~~~~A~~l~~~m~~~g------------------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 134 (523)
.+.+.|.++.|..=|+...... .+..+...||...+......+++.- +-|...|-
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 4567899999999888877654 4555566788888888888887763 45777788
Q ss_pred HHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 035847 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-- 212 (523)
Q Consensus 135 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-- 212 (523)
.--.+|...|++..|..=+.. ... --.-++...--+-..+-..|+.+.+....++-.+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~-------------------ask-Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQ-------------------ASK-LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHH-------------------HHh-ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 888888888888888766555 211 1123455555666777788888888877776543
Q ss_pred CChhh----HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHH---HHHHhhccCChhHHHHHH
Q 035847 213 KHLVS----WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG---VLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 213 ~~~~t----~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~---ll~a~~~~g~~~~a~~i~ 285 (523)
||.-. |-.|=. ..+ ..+.+......+++.++++-.+...+....-..++|+. +-.++...+.+.+|.+.-
T Consensus 254 pdHK~Cf~~YKklkK-v~K--~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKK-VVK--SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred cchhhHHHHHHHHHH-HHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 54432 111100 000 00001133445566666666655554333222334432 222223345555555554
Q ss_pred HHHH
Q 035847 286 GYVL 289 (523)
Q Consensus 286 ~~~~ 289 (523)
.+++
T Consensus 331 ~evL 334 (504)
T KOG0624|consen 331 KEVL 334 (504)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.61 Score=41.06 Aligned_cols=64 Identities=6% Similarity=0.019 Sum_probs=43.8
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCC-CcchHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPER-NVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
..|..+-..+...|++++|...+.+..+.... .+ ....|..+-..+.+.|++++|+..+.+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEED------------PNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc------------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666667788888888888887765321 11 135677777778888888888888776554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.09 Score=40.03 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHHHhcC-CCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH
Q 035847 109 KDHRVGKDVYDYMISIKF-EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~ 187 (523)
|+++.|..+++.+.+..- .|+...+-.+-.+|.+.|++++|..++++ .+. +. .+....
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-------------------~~~-~~-~~~~~~ 61 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-------------------LKL-DP-SNPDIH 61 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-------------------HTH-HH-CHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------hCC-CC-CCHHHH
Confidence 344444444444444322 12344455588999999999999999976 333 11 122333
Q ss_pred HHHHHHHHhcCChHHHHHHHhc
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~ 209 (523)
-.+-.+|.+.|+.++|..+|++
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 4557888999999999999874
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.66 Score=40.59 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=61.1
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCC--CceeHhHHHHHHHhcCCHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEG--NACVKRPVLDMFIKCGRME 147 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~ 147 (523)
...|..+...+...|++++|+..|++..... -.| ...++..+-..|.+.|+.+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-------------------------~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-------------------------IDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------------------------ccchhhHHHHHHHHHHHHHcCCHH
Confidence 4566667777777788888888877654421 111 2347888889999999999
Q ss_pred HHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHH-------hcCChHHHHHHHh
Q 035847 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYA-------KCRYLKVAHCKFS 208 (523)
Q Consensus 148 ~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~-------k~g~~~~A~~vf~ 208 (523)
+|...+++ ... -.+.....++.+...|. +.|+.+.|...++
T Consensus 90 eA~~~~~~-------------------Al~-~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 90 KALEYYFQ-------------------ALE-RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHH-------------------HHH-hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 99999998 211 11122344555555666 7788775555544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.62 Score=40.98 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=45.1
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCC--ceeHhHHHHHHHhcCCH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN--ACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~ 146 (523)
+...|..+-..+...|++++|+..|++..... ..+. ...+..+...|.+.|++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------------~~~~~~~~~~~~la~~~~~~g~~ 88 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE-------------------------EDPNDRSYILYNMGIIYASNGEH 88 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------------------hccchHHHHHHHHHHHHHHcCCH
Confidence 34566677777777888888888887765421 1111 35678888899999999
Q ss_pred HHHHHHhhh
Q 035847 147 EMASGEFEE 155 (523)
Q Consensus 147 ~~A~~~f~~ 155 (523)
+.|...+++
T Consensus 89 ~~A~~~~~~ 97 (172)
T PRK02603 89 DKALEYYHQ 97 (172)
T ss_pred HHHHHHHHH
Confidence 999999988
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.5 Score=38.40 Aligned_cols=115 Identities=9% Similarity=0.061 Sum_probs=75.7
Q ss_pred chHHHHHHHHHH-hcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHH
Q 035847 243 GETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321 (523)
Q Consensus 243 ~~~A~~lf~~M~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~ 321 (523)
+..+...+..+. ..+..--...|..+...+...|++++|...+.........+.. ...+|..+-.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~--------------~~~~~~~lg~ 80 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD--------------RSYILYNIGL 80 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh--------------hHHHHHHHHH
Confidence 334444455553 2322223455666666777789999999999988764321110 2247888889
Q ss_pred HHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHH-------hhCCHHHHHHHHHh
Q 035847 322 MYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLA-------RAGQFDDTLNFMKK 376 (523)
Q Consensus 322 ~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~-------~~g~~~~A~~~~~~ 376 (523)
.|...|+. ++|...++..... .|+ ..++..+...+. +.|++++|...+++
T Consensus 81 ~~~~~g~~--~eA~~~~~~Al~~---~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 81 IHTSNGEH--TKALEYYFQALER---NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHcCCH--HHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99999999 9999999888754 344 456666666666 67777766655544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.47 Score=47.28 Aligned_cols=84 Identities=14% Similarity=0.042 Sum_probs=64.0
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCCh
Q 035847 32 CPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111 (523)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~ 111 (523)
+...|+++.|...+.+.++.. ..+...|..+-.+|.+.|++++|+..+++.....
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~--------------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~----------- 66 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD--------------PNNAELYADRAQANIKLGNFTEAVADANKAIELD----------- 66 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 345678888888888887754 2356677777778888888888888887776533
Q ss_pred HHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 112 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+...|..+-.+|.+.|++++|...|++
T Consensus 67 ---------------P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 67 ---------------PSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred ---------------cCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33566778888888899999999999988
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.57 Score=49.04 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=56.6
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCC
Q 035847 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~ 259 (523)
.+..+|.++--.+...|++++|...|++.. .|+..+|..+-. .+...|++++|.+.|++-.. +.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~------------~~~~~G~~~eA~~~~~~A~~--L~ 483 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGK------------VYELKGDNRLAADAYSTAFN--LR 483 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHh--cC
Confidence 345677777666667899999999999875 477778888888 88899999999999998876 45
Q ss_pred CCHHHHH
Q 035847 260 PNTISLS 266 (523)
Q Consensus 260 p~~~t~~ 266 (523)
|...||.
T Consensus 484 P~~pt~~ 490 (517)
T PRK10153 484 PGENTLY 490 (517)
T ss_pred CCCchHH
Confidence 6555653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.6 Score=36.01 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=50.6
Q ss_pred HHHhhhhcCCccc-----cchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 221 MLAGYALGGFREE-----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 221 li~~~~~~g~~~~-----i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
+|.+|++.+...+ +....+.|+-+.-.++++++.. +-+|++.....+-.||.+.|+..++.+++...-+.|++
T Consensus 75 Vi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444554444444 4578889999999999999876 34688888889999999999999999999999998874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.54 E-value=12 Score=39.72 Aligned_cols=263 Identities=12% Similarity=0.031 Sum_probs=153.1
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc-HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
...|+.+-..++....+++|.+.|..-.... .+.++.+..++++-+.+-.. ++-|....-.+-+++...|.-+.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHH
Confidence 3578888888888888888888886644322 66666666666655544443 45566777788899999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHh--hh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG--YA 226 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~--~~ 226 (523)
|.+.|-+ .-.|. +-++.|...+.+.+|.++-+...-|.+.|.-+--.+ +.
T Consensus 871 AV~a~Lr-----------------------~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~ 922 (1189)
T KOG2041|consen 871 AVEAYLR-----------------------RSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLA 922 (1189)
T ss_pred HHHHHHh-----------------------ccCcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 9998866 22232 445777888889999999888776766543221111 22
Q ss_pred hcCCccccchhhccCCchHHHHHHHHHHh----cCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHH-H-
Q 035847 227 LGGFREEITGFTQYGDGETALEFFSRMIQ----TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV-G- 300 (523)
Q Consensus 227 ~~g~~~~i~~~~~~g~~~~A~~lf~~M~~----~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~-~- 300 (523)
.....+.|..+.++|+.-+|-+++..|.+ .+.+|-..-=.-+|.|..-.. ..++.+-.+...++|...+... .
T Consensus 923 ~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~-h~~~ik~~~~~~~~g~~~dat~lle 1001 (1189)
T KOG2041|consen 923 DANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVEN-HRQTIKELRKIDKHGFLEDATDLLE 1001 (1189)
T ss_pred hcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhcCcchhhhhhhh
Confidence 33344447788899999999999988865 455554433333333332111 1111111222223343322211 0
Q ss_pred hHHHhhh-CC----CC--CcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHH
Q 035847 301 IALISIQ-GL----GT--GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368 (523)
Q Consensus 301 ~~li~~y-~~----~p--~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~ 368 (523)
+.++..- .+ -. ....|-.|..--...|.+ +.|++.--.+.+-..+-|-.+.|+.+.-+-|....+.
T Consensus 1002 s~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v--~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFG 1074 (1189)
T KOG2041|consen 1002 SGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRV--KDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFG 1074 (1189)
T ss_pred hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchH--HHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhh
Confidence 0000000 11 11 222333444444556788 8887765555442267888888887766555544443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.67 Score=37.98 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=57.6
Q ss_pred hhccCChHHHHHHHHHHHHhcCCCC--ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC
Q 035847 105 CSELKDHRVGKDVYDYMISIKFEGN--ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182 (523)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 182 (523)
+-..|+.++|..+|+.....|+..+ ...+-.+-+.|...|++++|..+|++ ... . .|
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~-------------------~~~-~-~p 69 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEE-------------------ALE-E-FP 69 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHH-H-CC
Confidence 3345666666666666666665543 23444566777888888888888888 222 1 12
Q ss_pred c----hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHH
Q 035847 183 D----LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223 (523)
Q Consensus 183 d----~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~ 223 (523)
+ ..+...+--++...|+.++|...+-....++...|.--|.
T Consensus 70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 70 DDELNAALRVFLALALYNLGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1122222235567788888888776544444445555555
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.49 E-value=6.8 Score=39.33 Aligned_cols=141 Identities=8% Similarity=0.086 Sum_probs=85.3
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCCC-ChhhH
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK-HLVSW 218 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~-~~~t~ 218 (523)
-+.+++..|.++|.+ +....-.. .... ..+..+-+|++|. ..+++..........+. ....|
T Consensus 17 qkq~~~~esEkifsk--------------I~~e~~~~-~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~ 80 (549)
T PF07079_consen 17 QKQKKFQESEKIFSK--------------IYDEKESS-PFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAY 80 (549)
T ss_pred HHHhhhhHHHHHHHH--------------HHHHhhcc-hHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchH
Confidence 466788888888877 11111111 0111 1344566778876 35566666665555431 23456
Q ss_pred HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc--CCCC------------CHHHHHHHHHHhhccCChhHHHHH
Q 035847 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT--DMQP------------NTISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 219 ~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~--g~~p------------~~~t~~~ll~a~~~~g~~~~a~~i 284 (523)
-.+..++ -+.+.+++++|++.|..-... +-+| |..-=+.....+...|.+.+|+.+
T Consensus 81 l~LF~~L----------~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~i 150 (549)
T PF07079_consen 81 LPLFKAL----------VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAI 150 (549)
T ss_pred HHHHHHH----------HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 6666644 234678888888888776654 3332 222223455667788999999998
Q ss_pred HHHHHHhcCC----chHHHHhHHHhhh
Q 035847 285 HGYVLRHHIQ----LSTGVGIALISIQ 307 (523)
Q Consensus 285 ~~~~~~~g~~----~~~~~~~~li~~y 307 (523)
++.+...=++ .+..+|+.++-+|
T Consensus 151 Ln~i~~~llkrE~~w~~d~yd~~vlml 177 (549)
T PF07079_consen 151 LNRIIERLLKRECEWNSDMYDRAVLML 177 (549)
T ss_pred HHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence 8888765444 7788888766665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.88 Score=47.16 Aligned_cols=199 Identities=14% Similarity=0.072 Sum_probs=106.1
Q ss_pred HHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHH-----HHHHHHhcC
Q 035847 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTS-----MMGMYNVLG 84 (523)
Q Consensus 10 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~-----li~~~~~~g 84 (523)
+++|+++|-.|+...... .|+-.|.+.+|.++|. +.|.... -...|+- ...-|...|
T Consensus 623 L~~~k~rge~P~~iLlA~---~~Ay~gKF~EAAklFk---~~G~enR------------AlEmyTDlRMFD~aQE~~~~g 684 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLLLAD---VFAYQGKFHEAAKLFK---RSGHENR------------ALEMYTDLRMFDYAQEFLGSG 684 (1081)
T ss_pred HHHHHhcCCCchHHHHHH---HHHhhhhHHHHHHHHH---HcCchhh------------HHHHHHHHHHHHHHHHHhhcC
Confidence 567778888898865443 4556677888777764 4554211 1112221 123344444
Q ss_pred CchHHHHHHHHhhHcc--------HHHHhhccCChHHHHHHH------HHHHHhcCC---CCceeHhHHHHHHHhcCCHH
Q 035847 85 YYEEIVNLFYLLIDEG--------VYKACSELKDHRVGKDVY------DYMISIKFE---GNACVKRPVLDMFIKCGRME 147 (523)
Q Consensus 85 ~~~~A~~l~~~m~~~g--------ll~~~~~~~~~~~a~~~~------~~m~~~g~~---p~~~~~~~li~~~~~~g~~~ 147 (523)
..++-..+.++--+.- ....+.+.|+.+.|..+. +.++..+-. .+..+.-.+-.-+-+...+.
T Consensus 685 ~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 4444443332211100 223333344444433321 111222211 12233333333334455566
Q ss_pred HHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChh-hHHHHHHh
Q 035847 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLV-SWNAMLAG 224 (523)
Q Consensus 148 ~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~-t~~~li~~ 224 (523)
-|-++|.+ +.. -..++++....+++++|.++-+..++ ||+. .|.-.+
T Consensus 765 LAaeIF~k-------------------~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwL-- 814 (1081)
T KOG1538|consen 765 LAAEIFLK-------------------MGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWL-- 814 (1081)
T ss_pred hHHHHHHH-------------------hcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHh--
Confidence 77777766 322 24677888999999999999999886 6664 232222
Q ss_pred hhhcCCccc-cchhhccCCchHHHHHHHHHHhcC
Q 035847 225 YALGGFREE-ITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 225 ~~~~g~~~~-i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
+++.++++ =++|.++|+-.+|..+++++....
T Consensus 815 -AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 815 -AENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred -hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 22333322 338889999999999999886543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.67 Score=42.10 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=32.4
Q ss_pred hhhccCCchHHHHHHHHHHhc--CCCCCHHHHHHHHHHhhccCChhHHH
Q 035847 236 GFTQYGDGETALEFFSRMIQT--DMQPNTISLSGVLAACAQVKGFKLGK 282 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~ 282 (523)
-|.+.|.+..|..-|+.+.+. +..........++.++-+.|..+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 778899999999999998875 22222345567788888888877444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.5 Score=37.52 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCC
Q 035847 75 SMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR 145 (523)
Q Consensus 75 ~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 145 (523)
.+-.-+.+.|++++|..+|+-...-+ +-..|-..|++++|.+.|....... +-|+..+-.+-.+|.+.|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 34445668899999999999887655 5556667899999999999998876 3567777788889999999
Q ss_pred HHHHHHHhhh
Q 035847 146 MEMASGEFEE 155 (523)
Q Consensus 146 ~~~A~~~f~~ 155 (523)
.+.|.+-|+.
T Consensus 119 ~~~A~~aF~~ 128 (157)
T PRK15363 119 VCYAIKALKA 128 (157)
T ss_pred HHHHHHHHHH
Confidence 9999999998
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.96 E-value=16 Score=39.86 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=75.1
Q ss_pred hhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHH
Q 035847 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF 250 (523)
Q Consensus 174 ~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf 250 (523)
.+++.+-.+-..++.+|+ ..|.|+.++|..+++.... .|..|-.++-. .|.+.|+.++|..+|
T Consensus 35 llkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~------------~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 35 LLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQN------------VYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHH------------HHHHHhhhhHHHHHH
Confidence 455534444445555554 3578999999999887753 47778888888 889999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 251 ~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
++..+ .-|+..-...+..+|.+.+++.+-.++--++-+
T Consensus 101 e~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 101 ERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876 457788888889999998888666665444433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=7.3 Score=36.43 Aligned_cols=184 Identities=14% Similarity=0.147 Sum_probs=103.1
Q ss_pred HHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH---HHHHHHHHhcCChHHHHHHHhcCCC-
Q 035847 137 LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN---NSLMDFYAKCRYLKVAHCKFSKIKQ- 212 (523)
Q Consensus 137 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~---~~li~~~~k~g~~~~A~~vf~~m~~- 212 (523)
...+.+.|++++|...|++ +.. ..+-+.... --+..+|-+.++.++|...|++..+
T Consensus 39 A~~~~~~g~y~~Ai~~f~~-------------------l~~-~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEA-------------------LDN-RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHH-------------------HHH-hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344567888999988888 444 111122222 2456778889999999988887653
Q ss_pred -CC--hhhHHHHHHhhhhcCCccc-cchhhc----cCC---chHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHH
Q 035847 213 -KH--LVSWNAMLAGYALGGFREE-ITGFTQ----YGD---GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281 (523)
Q Consensus 213 -~~--~~t~~~li~~~~~~g~~~~-i~~~~~----~g~---~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a 281 (523)
|+ -+.|--.+.|++....... +..+.. ..+ ..+|+..|+++.+ -|-...-..+|
T Consensus 99 ~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A 163 (243)
T PRK10866 99 NPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDA 163 (243)
T ss_pred CcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHH
Confidence 22 2344444442220000000 000000 011 1234444444443 33333334455
Q ss_pred HHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHH
Q 035847 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDL 360 (523)
Q Consensus 282 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~ 360 (523)
.+.+..+...=-. .- -.+..-|-+.|.. .-|..-|+.+.+.|.-.|. .+....|+.+
T Consensus 164 ~~rl~~l~~~la~-------------------~e-~~ia~~Y~~~~~y--~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a 221 (243)
T PRK10866 164 TKRLVFLKDRLAK-------------------YE-LSVAEYYTKRGAY--VAVVNRVEQMLRDYPDTQATRDALPLMENA 221 (243)
T ss_pred HHHHHHHHHHHHH-------------------HH-HHHHHHHHHcCch--HHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 4433333221000 00 1244568889999 8999999999988744444 5677789999
Q ss_pred HHhhCCHHHHHHHHHhC
Q 035847 361 LARAGQFDDTLNFMKKM 377 (523)
Q Consensus 361 ~~~~g~~~~A~~~~~~m 377 (523)
|...|..++|.+.....
T Consensus 222 y~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 222 YRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHcCChHHHHHHHHHH
Confidence 99999999998877654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.27 Score=41.87 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-----c
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-----T 256 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~-----~ 256 (523)
.+...++..+...|+.++|.++.+.+.. | |...|-.+|. +|...|+..+|++.|+.+.. -
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~------------~~~~~g~~~~A~~~Y~~~~~~l~~el 130 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMR------------ALAAQGRRAEALRVYERYRRRLREEL 130 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHH------------HHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHH------------HHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 3566778888899999999999998764 4 6679999999 99999999999999998754 4
Q ss_pred CCCCCHHHHH
Q 035847 257 DMQPNTISLS 266 (523)
Q Consensus 257 g~~p~~~t~~ 266 (523)
|+.|+..|-.
T Consensus 131 g~~Ps~~~~~ 140 (146)
T PF03704_consen 131 GIEPSPETRA 140 (146)
T ss_dssp S----HHHHH
T ss_pred CcCcCHHHHH
Confidence 8999887643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.66 E-value=2.1 Score=42.74 Aligned_cols=143 Identities=13% Similarity=0.132 Sum_probs=74.2
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCC-CCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD-LESDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
+.+|..+|+.-.+..-++.|..+|-+ .++.| +.+++.+++++|..|+ .|+...|.++|+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k-------------------~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ife 456 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIK-------------------LRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFE 456 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHH-------------------HhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHH
Confidence 45566666666666666666666666 44334 4556666666666554 455566666665
Q ss_pred c-CCC-CChhhH-HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhccCChhHHHH
Q 035847 209 K-IKQ-KHLVSW-NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN--TISLSGVLAACAQVKGFKLGKE 283 (523)
Q Consensus 209 ~-m~~-~~~~t~-~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~ 283 (523)
. |.. ||...| +-.+. -+..-++-+.|-.+|+.-..+ +.-+ ...|..+|+-=..-|++..+..
T Consensus 457 lGl~~f~d~~~y~~kyl~------------fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 457 LGLLKFPDSTLYKEKYLL------------FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred HHHHhCCCchHHHHHHHH------------HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 3 222 444332 12222 333455556666666633321 1112 3456666666566666666655
Q ss_pred HHHHHHHhcCCchHHHHhHHHhhh
Q 035847 284 IHGYVLRHHIQLSTGVGIALISIQ 307 (523)
Q Consensus 284 i~~~~~~~g~~~~~~~~~~li~~y 307 (523)
+-+.+.. +.|...+...+..+|
T Consensus 524 Le~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 524 LEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHHH--HcCcHhHHHHHHHHH
Confidence 5555544 234444444455555
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.65 E-value=12 Score=37.58 Aligned_cols=124 Identities=12% Similarity=0.083 Sum_probs=77.7
Q ss_pred hhHHHHHHHHhhhCCCCCC------cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHH
Q 035847 3 IKNVTLLLQSMDLTNPDEC------TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSM 76 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~l 76 (523)
+.+|.++|.+.-.+. .-+ .+.-+.+|+++- ..+++.-........+.- | -..|-.+
T Consensus 22 ~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~---------------~-~s~~l~L 83 (549)
T PF07079_consen 22 FQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF---------------G-KSAYLPL 83 (549)
T ss_pred hhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc---------------C-CchHHHH
Confidence 456667776665431 112 223445666664 344555555544444321 1 3344444
Q ss_pred HHHH--HhcCCchHHHHHHHHhhHc--c----------------------HHHHhhccCChHHHHHHHHHHHHhcCC---
Q 035847 77 MGMY--NVLGYYEEIVNLFYLLIDE--G----------------------VYKACSELKDHRVGKDVYDYMISIKFE--- 127 (523)
Q Consensus 77 i~~~--~~~g~~~~A~~l~~~m~~~--g----------------------ll~~~~~~~~~~~a~~~~~~m~~~g~~--- 127 (523)
..++ -+.+.+.+|++.+..-... + ....+...|++.+|+.++++++..=++
T Consensus 84 F~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~ 163 (549)
T PF07079_consen 84 FKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKREC 163 (549)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhh
Confidence 4443 3567888888888665544 2 567778899999999999988876544
Q ss_pred -CCceeHhHHHHHHHhcC
Q 035847 128 -GNACVKRPVLDMFIKCG 144 (523)
Q Consensus 128 -p~~~~~~~li~~~~~~g 144 (523)
-+..+||.++-+++++=
T Consensus 164 ~w~~d~yd~~vlmlsrSY 181 (549)
T PF07079_consen 164 EWNSDMYDRAVLMLSRSY 181 (549)
T ss_pred cccHHHHHHHHHHHhHHH
Confidence 68899999888888763
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.2 Score=36.57 Aligned_cols=76 Identities=14% Similarity=0.066 Sum_probs=58.1
Q ss_pred HHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCce----eHhHHHHHHH
Q 035847 78 GMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNAC----VKRPVLDMFI 141 (523)
Q Consensus 78 ~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~ 141 (523)
.++-..|+.++|+.+|++-...| +-+.+...|+.++|..+++...... |+.. +...+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 35566799999999999988876 6777889999999999999988652 4422 1122223566
Q ss_pred hcCCHHHHHHHhhh
Q 035847 142 KCGRMEMASGEFEE 155 (523)
Q Consensus 142 ~~g~~~~A~~~f~~ 155 (523)
..|+.++|...+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78999999998877
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.39 Score=35.76 Aligned_cols=61 Identities=20% Similarity=0.403 Sum_probs=49.1
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHh---cC-CccC-HhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE---YN-MEPA-MEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~---~g-~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
.+|+.+-..|...|+. ++|+.+|++..+. +| -.|+ ..++..+-..+.+.|++++|++++++
T Consensus 6 ~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRY--DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4688899999999999 9999999887753 22 1233 57888899999999999999999876
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.68 Score=32.97 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=44.6
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
+-..+.+.|++++|...|++ ... ...-+...+..+-..+...|++++|...|++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~-------------------~l~-~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQ-------------------ALK-QDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHH-------------------HHC-CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH-------------------HHH-HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567889999999999998 444 233377888999999999999999999998764
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.28 Score=35.49 Aligned_cols=61 Identities=28% Similarity=0.363 Sum_probs=47.5
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC-CHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG-RME 147 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~ 147 (523)
+..+|..+-..+.+.|++++|+..|.+..+.. +.+..+|..+-.+|.+.| +++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------------------------p~~~~~~~~~g~~~~~~~~~~~ 55 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------------------------PNNAEAYYNLGLAYMKLGKDYE 55 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------------------------TTHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCCHHHHHHHHHHHHHhCccHH
Confidence 34567777777888888888888887766543 446778888888999999 799
Q ss_pred HHHHHhhh
Q 035847 148 MASGEFEE 155 (523)
Q Consensus 148 ~A~~~f~~ 155 (523)
+|.+.|++
T Consensus 56 ~A~~~~~~ 63 (69)
T PF13414_consen 56 EAIEDFEK 63 (69)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=3.7 Score=35.22 Aligned_cols=90 Identities=9% Similarity=-0.005 Sum_probs=69.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 265 (523)
++-.-+...|++++|.++|+-.. .| +..-|-.|-. .+-..|++++|+..|.....-.. -|...+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~------------~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~ 106 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGE------------CCQAQKHWGEAIYAYGRAAQIKI-DAPQAP 106 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH------------HHHHHhhHHHHHHHHHHHHhcCC-CCchHH
Confidence 44455567899999999999875 34 3445666666 66678999999999999887552 355667
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 266 SGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 266 ~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
-.+-.++...|+.+.|++-|+..+..
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67777888999999999999888763
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.31 Score=34.78 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=31.3
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
..|+++.|.+.++.+++.. +-+...+..+-..+.+.|++++|..+|++
T Consensus 9 ~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444444444432 33667788888889999999999999888
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=4.8 Score=42.27 Aligned_cols=141 Identities=7% Similarity=0.020 Sum_probs=89.9
Q ss_pred CCChhhHHHHHHhhhhcCCccccchhhcc---CCchHHHHHHHHHHhcCCCCCH-HHHHHHHHHhhccCC--------hh
Q 035847 212 QKHLVSWNAMLAGYALGGFREEITGFTQY---GDGETALEFFSRMIQTDMQPNT-ISLSGVLAACAQVKG--------FK 279 (523)
Q Consensus 212 ~~~~~t~~~li~~~~~~g~~~~i~~~~~~---g~~~~A~~lf~~M~~~g~~p~~-~t~~~ll~a~~~~g~--------~~ 279 (523)
..|...|...+.|. .|... +...+|..+|++..+ ..||. ..|..+..++..... +.
T Consensus 334 ~~~~~Ay~~~lrg~----------~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~ 401 (517)
T PRK10153 334 PHQGAALTLFYQAH----------HYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLA 401 (517)
T ss_pred CCCHHHHHHHHHHH----------HHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 35778999999954 33333 337789999999987 45764 344443322221111 11
Q ss_pred HHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHH
Q 035847 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359 (523)
Q Consensus 280 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~ 359 (523)
.+.+........... ..+...|.++--.....|+. ++|...|++.... .|+...|..+-.
T Consensus 402 ~a~~~~~~a~al~~~---------------~~~~~~~~ala~~~~~~g~~--~~A~~~l~rAl~L---~ps~~a~~~lG~ 461 (517)
T PRK10153 402 ALSTELDNIVALPEL---------------NVLPRIYEILAVQALVKGKT--DEAYQAINKAIDL---EMSWLNYVLLGK 461 (517)
T ss_pred HHHHHHHHhhhcccC---------------cCChHHHHHHHHHHHhcCCH--HHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 122222211111000 22335677665566677999 9999999998864 689999999999
Q ss_pred HHHhhCCHHHHHHHHHh-CCCCCCCC
Q 035847 360 LLARAGQFDDTLNFMKK-MPFEPSSA 384 (523)
Q Consensus 360 ~~~~~g~~~~A~~~~~~-m~~~p~~~ 384 (523)
.+...|+.++|.+.+++ +.+.|...
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999877 44555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.16 E-value=18 Score=36.38 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhc-CCchHHHHhHHHhhh--------------CC--CCCcchH-HHHHHH
Q 035847 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHH-IQLSTGVGIALISIQ--------------GL--GTGSFVW-NSLIDM 322 (523)
Q Consensus 261 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y--------------~~--~p~~~~~-n~li~~ 322 (523)
-...|...|++--+...++.|+.+|....+.| ..+++++++++|..| |+ .||...| +-.+.-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35667788888889999999999999999998 456777777777666 44 3444444 234444
Q ss_pred HHhcCCCchHHHHHHHHHhHHhcCCccC--HhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 323 YGRCGAIQKNEGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 323 ~~~~g~~~~~~a~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
+...++- +.|..+|+.-..+ +.-+ ...|..||+-=..-|++..|..+=+.
T Consensus 476 Li~inde--~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~r 527 (660)
T COG5107 476 LIRINDE--ENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEER 527 (660)
T ss_pred HHHhCcH--HHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHH
Confidence 4555555 6666666644331 2223 35666666666666666555554333
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.62 Score=43.41 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=65.4
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~ 187 (523)
.+.++-....+..|.+.|+..|..+|+.||+.+=|..-... .+|...-..-...-..+..+.+. |+..|+.||-.+-
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~F~HYP~QQ~C~I~vLeq-ME~hGVmPdkE~e 161 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKVFLHYPQQQNCAIKVLEQ-MEWHGVMPDKEIE 161 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHHHhhCchhhhHHHHHHHH-HHHcCCCCchHHH
Confidence 44566666677888889999999999999999877643321 11111000011112223333333 6666999999999
Q ss_pred HHHHHHHHhcCC-hHHHHHHHhcCC
Q 035847 188 NSLMDFYAKCRY-LKVAHCKFSKIK 211 (523)
Q Consensus 188 ~~li~~~~k~g~-~~~A~~vf~~m~ 211 (523)
..||+++++.+. +.+..++.--|+
T Consensus 162 ~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 162 DILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhccccccHHHHHHHHHhhh
Confidence 999999998876 445566655555
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.47 Score=35.26 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=48.4
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC-CCc-hhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL-ESD-LLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~d-~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
.+|+.+-..|...|++++|+..|++ +.++... . |- .|+ ..+++.+-..|.+.|+.++|.+.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~-----------al~~~~~-~---~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEK-----------ALDIEEQ-L---GDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH-----------HHHHHHH-T---TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHHHHH-H---CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4678889999999999999999999 2222111 1 21 233 6688899999999999999999987
Q ss_pred c
Q 035847 209 K 209 (523)
Q Consensus 209 ~ 209 (523)
+
T Consensus 71 ~ 71 (78)
T PF13424_consen 71 K 71 (78)
T ss_dssp H
T ss_pred H
Confidence 5
|
... |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.87 E-value=30 Score=38.45 Aligned_cols=144 Identities=14% Similarity=0.084 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC-CchhHHHHHH
Q 035847 114 GKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE-SDLLVNNSLM 191 (523)
Q Consensus 114 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~d~~~~~~li 191 (523)
+..++..+....+.|+ ...|..|-..|...-+...|.+.|++| . .+. .|...+.+..
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KA-------------------F--eLDatdaeaaaa~a 533 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKA-------------------F--ELDATDAEAAAASA 533 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------h--cCCchhhhhHHHHH
Confidence 3334444444444554 457888999999988999999999882 1 122 2456677778
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHH
Q 035847 192 DFYAKCRYLKVAHCKFSKIKQKHL---VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSG 267 (523)
Q Consensus 192 ~~~~k~g~~~~A~~vf~~m~~~~~---~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ 267 (523)
+.|++..+++.|..+.-.-.+.+. ..||-.-.|. .|.+.++...|+.-|+.-.+. .| |.-.|..
T Consensus 534 dtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~----------yyLea~n~h~aV~~fQsALR~--dPkD~n~W~g 601 (1238)
T KOG1127|consen 534 DTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP----------YYLEAHNLHGAVCEFQSALRT--DPKDYNLWLG 601 (1238)
T ss_pred HHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc----------cccCccchhhHHHHHHHHhcC--CchhHHHHHH
Confidence 888888888888877443333221 2333333322 556667777777777666543 33 4556777
Q ss_pred HHHHhhccCChhHHHHHHHHHHH
Q 035847 268 VLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 268 ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
+..+|.+.|+...|.++|.....
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHh
Confidence 77777777777777777765543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=2.1 Score=43.13 Aligned_cols=111 Identities=9% Similarity=-0.103 Sum_probs=73.5
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCce----eHhHHHHHHHhcC
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNAC----VKRPVLDMFIKCG 144 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g 144 (523)
+...|+.+-.+|.+.|++++|+..|++-.+ +.|+.. +|..+-.+|.+.|
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---------------------------L~Pd~aeA~~A~yNLAcaya~LG 126 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---------------------------LNPNPDEAQAAYYNKACCHAYRE 126 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------------hCCCchHHHHHHHHHHHHHHHcC
Confidence 457899999999999999999999988766 357643 5888999999999
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC--chhHHHHHHHHHHhcCCh-----HHHHHHHhcCCCC
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES--DLLVNNSLMDFYAKCRYL-----KVAHCKFSKIKQK 213 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--d~~~~~~li~~~~k~g~~-----~~A~~vf~~m~~~ 213 (523)
+.++|...++++. . .....+..+.....+.| +..-+..++..+.+.|.. ..-.++..+.+.|
T Consensus 127 r~dEAla~LrrAL-e------lsn~~f~~i~~DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~aP 195 (453)
T PLN03098 127 EGKKAADCLRTAL-R------DYNLKFSTILNDPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQAP 195 (453)
T ss_pred CHHHHHHHHHHHH-H------hcchhHHHHHhCcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHhch
Confidence 9999999999931 1 11112222111111111 233667778877777752 2334555555544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.52 E-value=3.8 Score=39.51 Aligned_cols=122 Identities=8% Similarity=0.049 Sum_probs=84.1
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccC--CC----ChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHH
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPK--LN----NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSM 76 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~l 76 (523)
+++.+.+++.|.+.|++-+.++|-+..-.... .. ....+..+|+.|++...-. ..++-+++.+|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL----------Ts~~D~~~a~l 147 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL----------TSPEDYPFAAL 147 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc----------cCccchhHHHH
Confidence 57888999999999999998888775544433 22 2667899999999875421 14566778888
Q ss_pred HHHHHhcCC----chHHHHHHHHhhHcc------------HHHHhhccCC--hHHHHHHHHHHHHhcCCCCceeHhHH
Q 035847 77 MGMYNVLGY----YEEIVNLFYLLIDEG------------VYKACSELKD--HRVGKDVYDYMISIKFEGNACVKRPV 136 (523)
Q Consensus 77 i~~~~~~g~----~~~A~~l~~~m~~~g------------ll~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~l 136 (523)
+.. .... .+++..+|+.+...| +|..+..... +..+.++++.+.+.|+++....|..+
T Consensus 148 LA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 148 LAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred Hhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 766 3333 345677777777766 3333332222 34678899999999998888777754
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=90.35 E-value=9.7 Score=31.91 Aligned_cols=84 Identities=15% Similarity=0.068 Sum_probs=53.3
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHH-hhHcc-
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYL-LIDEG- 100 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~g- 100 (523)
.....++..+...+........++.+...+. .+....|.+|..|++.. ..+.++.+.. ...-.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~--------------~~~~~~~~li~ly~~~~-~~~ll~~l~~~~~~yd~ 72 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS--------------ENPALQTKLIELYAKYD-PQKEIERLDNKSNHYDI 72 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc--------------cchhHHHHHHHHHHHHC-HHHHHHHHHhccccCCH
Confidence 3455677777777788888888888776652 46678999999999864 4455555552 11111
Q ss_pred --HHHHhhccCChHHHHHHHHHH
Q 035847 101 --VYKACSELKDHRVGKDVYDYM 121 (523)
Q Consensus 101 --ll~~~~~~~~~~~a~~~~~~m 121 (523)
+++.|.+.+.++++.-++..+
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhh
Confidence 566665555555555555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.02 E-value=15 Score=34.04 Aligned_cols=128 Identities=12% Similarity=0.099 Sum_probs=90.1
Q ss_pred CCCCce-eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch---h-HHHHHHHHHHhcCCh
Q 035847 126 FEGNAC-VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL---L-VNNSLMDFYAKCRYL 200 (523)
Q Consensus 126 ~~p~~~-~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~---~-~~~~li~~~~k~g~~ 200 (523)
..++.. +|--++-+...+|+.+.|...+++ ++. .+ |.. . .+..++ --.|+.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~-------------------L~~-~f-p~S~RV~~lkam~l---Ea~~~~ 102 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQ-------------------LRD-RF-PGSKRVGKLKAMLL---EATGNY 102 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHH-------------------HHH-hC-CCChhHHHHHHHHH---HHhhch
Confidence 445543 455666777788999999999988 554 33 321 1 222222 235889
Q ss_pred HHHHHHHhcCCCC---ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 035847 201 KVAHCKFSKIKQK---HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277 (523)
Q Consensus 201 ~~A~~vf~~m~~~---~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~ 277 (523)
++|.++++.+.+. |.++|---+. ..-..|+.-+|++-+.+..+. +.-|...|--+-.-|...|+
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlA------------ilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLA------------ILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHH------------HHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhH
Confidence 9999999988753 4455554444 444567777888888887765 66788999999999999999
Q ss_pred hhHHHHHHHHHHH
Q 035847 278 FKLGKEIHGYVLR 290 (523)
Q Consensus 278 ~~~a~~i~~~~~~ 290 (523)
++.|.-.+++++-
T Consensus 170 f~kA~fClEE~ll 182 (289)
T KOG3060|consen 170 FEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888865
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.52 E-value=17 Score=33.97 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=109.1
Q ss_pred hhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC--C--------hhhHHHHHHhhhhcCCccccchh
Q 035847 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK--H--------LVSWNAMLAGYALGGFREEITGF 237 (523)
Q Consensus 168 ~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~--~--------~~t~~~li~~~~~~g~~~~i~~~ 237 (523)
+.+|..+.+..|. -++.|+..|.-..-+++-.+.|+.=..| . ...-++++. .+
T Consensus 125 R~lhAe~~~~lgn-----pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~------------~l 187 (366)
T KOG2796|consen 125 RILHAELQQYLGN-----PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMAN------------CL 187 (366)
T ss_pred HHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH------------HH
Confidence 3445555544232 3667777776555555555555543221 2 233455555 55
Q ss_pred hccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHH
Q 035847 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWN 317 (523)
Q Consensus 238 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n 317 (523)
.-.|.+.-.+.++++..+..-+-++.....|.+.-.+.|+.+.|...++...+..-..|....+.++. -
T Consensus 188 lG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~-----------~ 256 (366)
T KOG2796|consen 188 LGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL-----------M 256 (366)
T ss_pred hcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH-----------h
Confidence 56777888889999999877666788888888888899999999999998877543333322222221 1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC
Q 035847 318 SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA 384 (523)
Q Consensus 318 ~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 384 (523)
++-..|.-..+. .+|...|.+.... .|. ...-|.=.-.+.-.|+..+|.+.++.| +..|...
T Consensus 257 n~a~i~lg~nn~--a~a~r~~~~i~~~---D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNF--AEAHRFFTEILRM---DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccch--HHHHHHHhhcccc---CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 122233444555 6677777666543 222 222232222233457888888888887 4556555
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.6 Score=31.32 Aligned_cols=60 Identities=22% Similarity=0.417 Sum_probs=49.9
Q ss_pred CcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhC-CHHHHHHHHHh
Q 035847 312 GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAG-QFDDTLNFMKK 376 (523)
Q Consensus 312 ~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g-~~~~A~~~~~~ 376 (523)
+..+|..+-..+...|+. ++|+..|++..+. .|+ ...|..+-.++.+.| ++++|++.+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~--~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDY--EEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHH--HHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 345788888899999999 9999999999875 454 678888888899999 79999888765
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.94 E-value=22 Score=33.99 Aligned_cols=232 Identities=13% Similarity=0.119 Sum_probs=122.0
Q ss_pred ccCChHHHHHHHHHHHHhc--CCCC------ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 107 ELKDHRVGKDVYDYMISIK--FEGN------ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~g--~~p~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
+.|+.+.|..++.+....- ..|+ ...||.=.+.+.+..+++.|..+++++ ..+.+.--+..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a-----------~~~l~~~~~~~ 73 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRA-----------YDILEKPGKMD 73 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-----------HHHHHhhhhcc
Confidence 3455555555555554332 2232 124555555555555899999998882 22221101110
Q ss_pred CCCC-----chhHHHHHHHHHHhcCChH---HHHHHHhcCCC--CC-hhhHHHHHHhhhhcCCccccchhhccCCchHHH
Q 035847 179 DLES-----DLLVNNSLMDFYAKCRYLK---VAHCKFSKIKQ--KH-LVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247 (523)
Q Consensus 179 g~~~-----d~~~~~~li~~~~k~g~~~---~A~~vf~~m~~--~~-~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~ 247 (523)
...| -..+...|+.+|...+..+ +|..+++.+.. |+ ...+-.-|. .+.+.++.+++.
T Consensus 74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~------------il~~~~~~~~~~ 141 (278)
T PF08631_consen 74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLE------------ILLKSFDEEEYE 141 (278)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHH------------HHhccCChhHHH
Confidence 1222 3456778888888888755 45556666642 33 233333444 555578899999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh---hccCChhHHHHHHHHHHHhcCCchHH-HHhH-HHhhh---CCCCCcchHHHH
Q 035847 248 EFFSRMIQTDMQPNTISLSGVLAAC---AQVKGFKLGKEIHGYVLRHHIQLSTG-VGIA-LISIQ---GLGTGSFVWNSL 319 (523)
Q Consensus 248 ~lf~~M~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~i~~~~~~~g~~~~~~-~~~~-li~~y---~~~p~~~~~n~l 319 (523)
+.+.+|... +.-....+..++... ... ....+...+.+++...+.|... .... ++... ...++..
T Consensus 142 ~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~----- 214 (278)
T PF08631_consen 142 EILMRMIRS-VDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLS----- 214 (278)
T ss_pred HHHHHHHHh-cccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCcccc-----
Confidence 999999875 222334455544444 332 3456666676766655555443 1111 11100 0000000
Q ss_pred HHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHH-------HHhhCCHHHHHHHHH
Q 035847 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL-------LARAGQFDDTLNFMK 375 (523)
Q Consensus 320 i~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~-------~~~~g~~~~A~~~~~ 375 (523)
...++ +...++++...+..+-+.+..+-.++... +-+.+++++|.++++
T Consensus 215 -----~~~~i--~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 215 -----SSEKI--ESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred -----chhHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 01112 45555566444443555555555544433 456888999988876
|
It is also involved in sporulation []. |
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=28 Score=35.40 Aligned_cols=198 Identities=11% Similarity=-0.024 Sum_probs=108.4
Q ss_pred HHHHHhhhCCCCCCcch--HHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCC
Q 035847 8 LLLQSMDLTNPDECTVT--YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY 85 (523)
Q Consensus 8 ~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~ 85 (523)
++++.+.+.|..|+... ..+.|..++..|+.+. .+.+.+.|..++. .+...+ +.+...++.|+
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~----------~~~~~~-t~L~~A~~~g~ 80 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDV----------KYPDIE-SELHDAVEEGD 80 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccc----------cCCCcc-cHHHHHHHCCC
Confidence 45667777888776533 3445555667777654 4445556653221 111122 34556667788
Q ss_pred chHHHHHHHHhh-------Hcc--HHHHhhccCChHHHHHHHHHHHHhcCCCCcee--HhHHHHHHHhcCCHHHHHHHhh
Q 035847 86 YEEIVNLFYLLI-------DEG--VYKACSELKDHRVGKDVYDYMISIKFEGNACV--KRPVLDMFIKCGRMEMASGEFE 154 (523)
Q Consensus 86 ~~~A~~l~~~m~-------~~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~f~ 154 (523)
.+.+..+++.-. ..| .+...+..|+. ++.+.+.+.|..|+... ..+.+...+..|+.+-+..+++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 877666665321 112 44455555655 45556666777665432 3345566667888887777766
Q ss_pred hccccccCchhhHhhHhhhhhhcCCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCCCChhh---HHHHHHhhhhcC
Q 035847 155 EKDFSNLSLLKHGKEIHPHHLKKDDLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS---WNAMLAGYALGG 229 (523)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t---~~~li~~~~~~g 229 (523)
. |..++.. ...+-+...+..|+.+-+..+++.-..++... .++++.
T Consensus 157 ~-----------------------g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~------ 207 (413)
T PHA02875 157 H-----------------------KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALC------ 207 (413)
T ss_pred c-----------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHH------
Confidence 5 3332211 12234455566788888877777655444332 223333
Q ss_pred CccccchhhccCCchHHHHHHHHHHhcCCCCCHH
Q 035847 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263 (523)
Q Consensus 230 ~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 263 (523)
..++.|+. ++.+-+.+.|..|+..
T Consensus 208 ------~A~~~~~~----~iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 208 ------YAIENNKI----DIVRLFIKRGADCNIM 231 (413)
T ss_pred ------HHHHcCCH----HHHHHHHHCCcCcchH
Confidence 33455654 3445555677777643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=88.64 E-value=3.7 Score=38.85 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
...|+.-+..+.+.|+.++|...|+.+.+ |+. ..+--+-. .|...|++++|...|+.+...-
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~------------~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQ------------LNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHHC
Confidence 45677777777888999999999998864 543 24444555 7888999999999999998642
Q ss_pred C-CC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 258 M-QP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 258 ~-~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
. .| ....+-.+...+...|+.+.|..+++.+++.
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 11 1233333445666899999999999988874
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.42 E-value=1.5 Score=31.99 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=36.2
Q ss_pred hhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+.++++.|.++++.+++.. +.+...+...-.+|.+.|++++|...|+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHH
Confidence 444455555555555555542 45777888888999999999999999998
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.39 E-value=10 Score=38.84 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=94.0
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
..-.+.+++.+-+.|..+.|+.+-.+ |+ .-.+...++|+++.|.++-++
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D--------------------------~~-----~rFeLAl~lg~L~~A~~~a~~ 343 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD--------------------------PD-----HRFELALQLGNLDIALEIAKE 343 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS---------------------------HH-----HHHHHHHHCT-HHHHHHHCCC
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC--------------------------hH-----HHhHHHHhcCCHHHHHHHHHh
Confidence 44588999999999999999998766 21 224666789999999998877
Q ss_pred CCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 035847 210 IKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 210 m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~ 289 (523)
.. +...|..|-. ...+.|+++-|.+.|.+... |..|+--|.-.|+.+.-.++-+...
T Consensus 344 ~~--~~~~W~~Lg~------------~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 344 LD--DPEKWKQLGD------------EALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp CS--THHHHHHHHH------------HHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred cC--cHHHHHHHHH------------HHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 65 5668999999 88899999999999887642 4455556667788877777776666
Q ss_pred HhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHH
Q 035847 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340 (523)
Q Consensus 290 ~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~ 340 (523)
..| -+|....++...|+. ++..+++.+
T Consensus 401 ~~~----------------------~~n~af~~~~~lgd~--~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG----------------------DINIAFQAALLLGDV--EECVDLLIE 427 (443)
T ss_dssp HTT-----------------------HHHHHHHHHHHT-H--HHHHHHHHH
T ss_pred Hcc----------------------CHHHHHHHHHHcCCH--HHHHHHHHH
Confidence 554 356666666777777 666666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.38 E-value=2.7 Score=39.70 Aligned_cols=123 Identities=10% Similarity=0.153 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHH
Q 035847 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYG 324 (523)
Q Consensus 245 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~ 324 (523)
+...+=++++..|= -..+.+++++|...|...++.. +.|.+-|..=-.+|.
T Consensus 76 e~~~~AE~LK~eGN------------~~m~~~~Y~eAv~kY~~AI~l~-----------------P~nAVyycNRAAAy~ 126 (304)
T KOG0553|consen 76 EDKALAESLKNEGN------------KLMKNKDYQEAVDKYTEAIELD-----------------PTNAVYYCNRAAAYS 126 (304)
T ss_pred hHHHHHHHHHHHHH------------HHHHhhhHHHHHHHHHHHHhcC-----------------CCcchHHHHHHHHHH
Confidence 34455556665552 2446678888888888887621 347788888999999
Q ss_pred hcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCCCCCCCCHHHHHHHHHHHHhh
Q 035847 325 RCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSSAEPCNPDIAEHAARHLFEL 402 (523)
Q Consensus 325 ~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~~~~~~~~~l~~~ 402 (523)
+.|.. +.|.+=-+.-. .+.|. ..+|..|=.+|...|++++|.+.+++ +.+.|+-. .++...++++..+..
T Consensus 127 ~Lg~~--~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne---~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 127 KLGEY--EDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE---SYKSNLKIAEQKLNE 198 (304)
T ss_pred Hhcch--HHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH---HHHHHHHHHHHHhcC
Confidence 99999 88887665554 45666 68999999999999999999999888 56888654 344444555555544
Q ss_pred CC
Q 035847 403 EP 404 (523)
Q Consensus 403 ~~ 404 (523)
.+
T Consensus 199 ~~ 200 (304)
T KOG0553|consen 199 PK 200 (304)
T ss_pred CC
Confidence 33
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.86 E-value=43 Score=36.04 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=37.9
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
.-.+|..+.+-.-..|+++.|..+.+.=.+.+-..... -+..-+..-+.-..+.|+.+-...++-.|..
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lL---------L~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLL---------LKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHH---------hccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 44567777766667788888888766544333211111 1333444555555566666655555544443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.68 E-value=17 Score=31.63 Aligned_cols=134 Identities=8% Similarity=0.089 Sum_probs=89.2
Q ss_pred HHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHH
Q 035847 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYA 195 (523)
Q Consensus 116 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~ 195 (523)
+....+.+.|+.|+...|..+|+.+.+.|++.....++.- ++-+|.......+-.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----------------------~Vi~DSk~lA~~LLs~~ 71 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----------------------HVIPDSKPLACQLLSLG 71 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----------------------cccCCcHHHHHHHHHhH
Confidence 4455556678999999999999999999998888777666 77777665555443333
Q ss_pred hcC--ChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 035847 196 KCR--YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273 (523)
Q Consensus 196 k~g--~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 273 (523)
... -..-|.+++.++.. .+..++. .+...|++-+|+++.+..... +......++.|..
T Consensus 72 ~~~~~~~Ql~lDMLkRL~~----~~~~iie------------vLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~ 131 (167)
T PF07035_consen 72 NQYPPAYQLGLDMLKRLGT----AYEEIIE------------VLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAA 131 (167)
T ss_pred ccChHHHHHHHHHHHHhhh----hHHHHHH------------HHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHH
Confidence 221 13334455555432 4555666 667799999999998875332 2223355777877
Q ss_pred ccCChhHHHHHHHHHHHhc
Q 035847 274 QVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 274 ~~g~~~~a~~i~~~~~~~g 292 (523)
+.++...=..++....+.+
T Consensus 132 ~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 132 NSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HcCCHHHHHHHHHHHHHhh
Confidence 8787777777776666543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.10 E-value=3.2 Score=42.52 Aligned_cols=133 Identities=12% Similarity=0.103 Sum_probs=87.5
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
..-.+.+++-+-+.|.++.|+.+-.+-.. -.+...+.|+++.|.++-.. .++...|..|-+...+.|+++-|
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH--RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH--HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH--HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHH
Confidence 34478888888889999999998766443 34455667777777776554 34667899999999999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcC
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g 229 (523)
.+.|.+ .+. +..|+-.|.-.|+.+.-.++-+.-...+ -+|....
T Consensus 367 e~c~~k-------------------~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--~~n~af~------ 410 (443)
T PF04053_consen 367 EECYQK-------------------AKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG--DINIAFQ------ 410 (443)
T ss_dssp HHHHHH-------------------CT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHH------
T ss_pred HHHHHh-------------------hcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc--CHHHHHH------
Confidence 999888 332 5667777778888877777765543222 1344444
Q ss_pred CccccchhhccCCchHHHHHHHH
Q 035847 230 FREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 230 ~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
++...|+.++..+++.+
T Consensus 411 ------~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 411 ------AALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHT-HHHHHHHHHH
T ss_pred ------HHHHcCCHHHHHHHHHH
Confidence 44455677666666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=86.80 E-value=17 Score=30.36 Aligned_cols=16 Identities=13% Similarity=0.488 Sum_probs=10.6
Q ss_pred CCceeHhHHHHHHHhc
Q 035847 128 GNACVKRPVLDMFIKC 143 (523)
Q Consensus 128 p~~~~~~~li~~~~~~ 143 (523)
.+....|.+|..|++.
T Consensus 39 ~~~~~~~~li~ly~~~ 54 (140)
T smart00299 39 ENPALQTKLIELYAKY 54 (140)
T ss_pred cchhHHHHHHHHHHHH
Confidence 4556677777777665
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.48 E-value=8.2 Score=37.26 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHhcCCccCHhHHHHH
Q 035847 332 NEGWRYFEMMKKEYNMEPAMEQYCCM 357 (523)
Q Consensus 332 ~~a~~~~~~m~~~~g~~p~~~ty~~l 357 (523)
.++.++++.+++. |+++...+|..+
T Consensus 199 ~r~~~l~~~l~~~-~~kik~~~yp~l 223 (297)
T PF13170_consen 199 ARVIELYNALKKN-GVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHc-CCccccccccHH
Confidence 3566667777666 777777666544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.42 E-value=28 Score=32.40 Aligned_cols=155 Identities=12% Similarity=0.144 Sum_probs=99.4
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHH-HHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLD-MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g 179 (523)
+.-+.-..++.+.|...++.+... + |...=-..|=. .+--.|++++|.++++. +-. .
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~-------------------lL~-d 115 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYES-------------------LLE-D 115 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHH-------------------Hhc-c
Confidence 444555667777777777777655 3 33221112222 23346888888888888 443 2
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 180 ~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
-+-|.++|--=+...-..|+--+|.+-+..-.+ -|...|--+-. -|...|++++|.-.+++|.-
T Consensus 116 dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae------------iY~~~~~f~kA~fClEE~ll- 182 (289)
T KOG3060|consen 116 DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE------------IYLSEGDFEKAAFCLEELLL- 182 (289)
T ss_pred CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH------------HHHhHhHHHHHHHHHHHHHH-
Confidence 244666776555555556766666665555443 58889999999 89999999999999999987
Q ss_pred CCCCCHH-HHHHHHHHhhc---cCChhHHHHHHHHHHHh
Q 035847 257 DMQPNTI-SLSGVLAACAQ---VKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 257 g~~p~~~-t~~~ll~a~~~---~g~~~~a~~i~~~~~~~ 291 (523)
+.|... -+..+-+.+.- ..+++.+++.++..++.
T Consensus 183 -~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 -IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred -cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 345443 33344443332 34567788888888774
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=4.8 Score=40.68 Aligned_cols=95 Identities=12% Similarity=-0.005 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC--CCCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
+...++.+-.+|.+.|++++|...|++.. .|+- .+|..+-. +|.+.|+.++|++.|++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAc------------aya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKAC------------CHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHh
Confidence 57788999999999999999999998854 3654 35888888 889999999999999998875
Q ss_pred CCCCCHHHHHHHHH--HhhccCChhHHHHHHHHHHHhcC
Q 035847 257 DMQPNTISLSGVLA--ACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 257 g~~p~~~t~~~ll~--a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
+ +.. |..+.. .+....+.....++++.+.+.|.
T Consensus 142 s--n~~--f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 142 Y--NLK--FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred c--chh--HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2 111 211111 11122344456666666666654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.29 E-value=13 Score=35.39 Aligned_cols=112 Identities=21% Similarity=0.133 Sum_probs=87.3
Q ss_pred HHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhH
Q 035847 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167 (523)
Q Consensus 88 ~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ 167 (523)
+...+=++++.+| .-..+.+++++|.+.|...++.. +-|.+-|..=-.+|++.|.++.|.+=.+.+
T Consensus 76 e~~~~AE~LK~eG--N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~A----------- 141 (304)
T KOG0553|consen 76 EDKALAESLKNEG--NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESA----------- 141 (304)
T ss_pred hHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHH-----------
Confidence 5777778888877 33456789999999999999863 446777888889999999999998887761
Q ss_pred hhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHH
Q 035847 168 KEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLA 223 (523)
Q Consensus 168 ~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~ 223 (523)
+ .+.|. ...|..|=.+|...|++++|.+-|+.-. +|+-.+|-.=|.
T Consensus 142 -------l---~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 142 -------L---SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred -------H---hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 1 23443 5688899999999999999999998775 477767766555
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.22 E-value=8.7 Score=30.00 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=49.4
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 190 li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
=+..+...|++++|..+.+.+.-||+.+|-+|-. .+.|..+++..-+.+|..+| .|-..+|.
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--------------~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--------------WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--------------HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3456778999999999999999999999998855 67888888888888888776 35555554
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=85.75 E-value=6.2 Score=37.37 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=65.1
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH----hHHHHHHHHHHhhCCHHHHHHHHHhCC-CCCCCC----
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM----EQYCCMVDLLARAGQFDDTLNFMKKMP-FEPSSA---- 384 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~---- 384 (523)
..|+..+.-+.+.|+. ++|...|+...+.| |+. ..+--+-..|...|++++|...|+.+- ..|+..
T Consensus 144 ~~Y~~A~~l~~~~~~y--~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 144 TDYNAAIALVQDKSRQ--DDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHhcCCH--HHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 3466666655667888 99999999998773 553 456677888899999999999988862 334433
Q ss_pred ----------CCCCHHHHHHHHHHHHhhCCCCC
Q 035847 385 ----------EPCNPDIAEHAARHLFELEPLSS 407 (523)
Q Consensus 385 ----------~~~~~~~~~~~~~~l~~~~~~~~ 407 (523)
..|+.+.|....+.+++..|...
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 56777778788888887777644
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.75 E-value=2.7 Score=30.50 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=42.5
Q ss_pred HhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc
Q 035847 30 QRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE 99 (523)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 99 (523)
..+.+.++++.|..+++.+.... +.+...|...-..+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--------------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--------------PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--------------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34567788888888888888764 236677777778888888888888888877654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.68 E-value=5.4 Score=37.84 Aligned_cols=76 Identities=7% Similarity=0.119 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-----
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ----- 255 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~----- 255 (523)
..++..++..+..+|+.+.+...++++.. -|...|..+|. +|.++|+...|+..|+.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~------------~y~~~g~~~~ai~~y~~l~~~~~ed 220 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLME------------AYLVNGRQSAAIRAYRQLKKTLAEE 220 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHH------------HHHHcCCchHHHHHHHHHHHHhhhh
Confidence 45778889999999999999999988764 36678999999 99999999999999998876
Q ss_pred cCCCCCHHHHHHHHHH
Q 035847 256 TDMQPNTISLSGVLAA 271 (523)
Q Consensus 256 ~g~~p~~~t~~~ll~a 271 (523)
.|+.|-..+.......
T Consensus 221 lgi~P~~~~~~~y~~~ 236 (280)
T COG3629 221 LGIDPAPELRALYEEI 236 (280)
T ss_pred cCCCccHHHHHHHHHH
Confidence 5888888887776666
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=84.47 E-value=20 Score=30.32 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=70.1
Q ss_pred HHhcCCCCCH--HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCc
Q 035847 253 MIQTDMQPNT--ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330 (523)
Q Consensus 253 M~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~ 330 (523)
|++.+..++. ...+++|.-.+.-+++....++++.+.. +.++..+. ..+-.+|++++.+.+...-.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~--l~~~~~~~---------~~~~ssf~~if~SlsnSsSa- 95 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHF--LNTDNIIG---------WLDNSSFHIIFKSLSNSSSA- 95 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHH--hhHHHHhh---------hcccchHHHHHHHHccChHH-
Confidence 4555666665 4467888877777788777777777722 11111000 24667899999999766542
Q ss_pred hHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhC
Q 035847 331 KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365 (523)
Q Consensus 331 ~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g 365 (523)
+--+..+|+-|++. +.+++..-|.+||.++.+.-
T Consensus 96 K~~~~~Lf~~Lk~~-~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 96 KLTSLTLFNFLKKN-DIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCC
Confidence 15677889999885 89999999999999988763
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=84.34 E-value=10 Score=32.03 Aligned_cols=92 Identities=10% Similarity=0.160 Sum_probs=70.0
Q ss_pred hhcCCCCCch--hHHHHHHHHHHhcCChHHHHHHHhcCC---------CCChhhHHHHHHhhhhcCCccccchhhccCC-
Q 035847 175 LKKDDLESDL--LVNNSLMDFYAKCRYLKVAHCKFSKIK---------QKHLVSWNAMLAGYALGGFREEITGFTQYGD- 242 (523)
Q Consensus 175 ~~~~g~~~d~--~~~~~li~~~~k~g~~~~A~~vf~~m~---------~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~- 242 (523)
|+..+..++. ...|+++.-.+.-++......+++.+. ..+-.+|++++. +..+..-
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~------------SlsnSsSa 95 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFK------------SLSNSSSA 95 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHH------------HHccChHH
Confidence 4433555654 356888888888888888888888774 245568999999 7755554
Q ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCh
Q 035847 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278 (523)
Q Consensus 243 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~ 278 (523)
---+..+|+-|++.+.+++..-|..+|.+|.+....
T Consensus 96 K~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 96 KLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 345788999999989999999999999999876433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.92 E-value=31 Score=34.36 Aligned_cols=266 Identities=15% Similarity=0.089 Sum_probs=135.3
Q ss_pred HHHhcCCchHHHHHHHHhhHcc-------------HHHHhhccCChHHHHHHHHHH--HHh--cCC-CCceeHhHHHHHH
Q 035847 79 MYNVLGYYEEIVNLFYLLIDEG-------------VYKACSELKDHRVGKDVYDYM--ISI--KFE-GNACVKRPVLDMF 140 (523)
Q Consensus 79 ~~~~~g~~~~A~~l~~~m~~~g-------------ll~~~~~~~~~~~a~~~~~~m--~~~--g~~-p~~~~~~~li~~~ 140 (523)
-+|+.|+.+..+.+|+...+.| +-.+|.-.+|+..|.+.|..= +.. |-. -..-+...|-+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 4678888888888888888777 333344455677777665422 111 100 0111222233333
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcC--------------------Ch
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR--------------------YL 200 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g--------------------~~ 200 (523)
--.|.+++|.-.-.+ .++.++++-+++.+. ...| .|-+.|...| .+
T Consensus 106 Kv~G~fdeA~~cc~r-------hLd~areLgDrv~e~------RAlY-NlgnvYhakGk~~g~~~pee~g~f~~ev~~al 171 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFR-------HLDFARELGDRVLES------RALY-NLGNVYHAKGKCTGLEAPEEKGAFNAEVTSAL 171 (639)
T ss_pred hhhcccchHHHHHHH-------HhHHHHHHhHHHhhh------HHHh-hhhhhhhhcccccCCCChhhcccccHHHHHHH
Confidence 344556655544333 455555555554443 1112 1222332222 12
Q ss_pred HHHHHHHhcCCC--CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHH----hcCCCC-CHHHHHHHHHHhh
Q 035847 201 KVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI----QTDMQP-NTISLSGVLAACA 273 (523)
Q Consensus 201 ~~A~~vf~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~----~~g~~p-~~~t~~~ll~a~~ 273 (523)
+.|.+.|.+-.+ .+.----+.-.+|...|+ .|.-.|+++.|+..-+.-. +-|-+. -...+..+-+++.
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGN-----TyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGN-----TYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCc-----eeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 233333332111 000001112222333333 6777889999987654432 233332 2345666777778
Q ss_pred ccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh----cCCcc
Q 035847 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE----YNMEP 349 (523)
Q Consensus 274 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~----~g~~p 349 (523)
-.|.++.|.+.+......-++....+ -...+.-+|-+.|.-...+ +.|+.++.+-..- ....-
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~-----------vEAQscYSLgNtytll~e~--~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRT-----------VEAQSCYSLGNTYTLLKEV--QKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchh-----------HHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 88999999888766543322211110 0112233445555555556 7777766543321 01222
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 350 AMEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 350 ~~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
....|-+|-.++...|..++|+.+.+.
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 356788889999999999999888655
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.33 E-value=2.1 Score=36.13 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=40.0
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+++.+.+.+..+.....++.+...+-..+....|.++..|++.++.+...++++.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~ 67 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT 67 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc
Confidence 4555555566666666666666555556788999999999999988999998876
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.29 E-value=7.4 Score=36.95 Aligned_cols=78 Identities=6% Similarity=0.085 Sum_probs=59.6
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+++++...++.+.+...++.++... +-|...|..+|.+|.+.|+...|...|++ +.....+..|+
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~--------------l~~~~~edlgi 223 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQ--------------LKKTLAEELGI 223 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHH--------------HHHHhhhhcCC
Confidence 4555566677888888888877663 55888999999999999999999999998 22222334499
Q ss_pred CCchhHHHHHHHH
Q 035847 181 ESDLLVNNSLMDF 193 (523)
Q Consensus 181 ~~d~~~~~~li~~ 193 (523)
.|...+.......
T Consensus 224 ~P~~~~~~~y~~~ 236 (280)
T COG3629 224 DPAPELRALYEEI 236 (280)
T ss_pred CccHHHHHHHHHH
Confidence 9998888776665
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.52 E-value=26 Score=30.62 Aligned_cols=122 Identities=13% Similarity=0.057 Sum_probs=77.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHcc-----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHH-
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLD- 138 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~- 138 (523)
..|-.-+. +++.+..++|+.-|.++.+.| +-......|+...|..-|+++-+..-.|-..-=.+-++
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 467899999999999999887 33445677888889888988876543443321111111
Q ss_pred --HHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 139 --MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 139 --~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
.+...|.+++.....+. +...+-..-...-.+|--+--|.|++.+|...|..+-.
T Consensus 139 a~lLvD~gsy~dV~srvep-------------------La~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEP-------------------LAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhh-------------------ccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23456777776666555 33212222333445666666789999999999998754
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.69 E-value=35 Score=29.75 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHh
Q 035847 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325 (523)
Q Consensus 246 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~ 325 (523)
-++..+.+.+.|+.|+...|..+++.+.+.|....-.++ +..++-+| ...--..+-.+..
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~D----------------Sk~lA~~LLs~~~ 72 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPD----------------SKPLACQLLSLGN 72 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCC----------------cHHHHHHHHHhHc
Confidence 356777888899999999999999999999987655544 33333332 2222222212211
Q ss_pred cCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 326 CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 326 ~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.. ..+.++=-.|.++.+ ..+..++..+...|++-+|.++.++.
T Consensus 73 --~~--~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 73 --QY--PPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --cC--hHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 12 233444333433311 15677888899999999999999885
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.03 E-value=23 Score=33.72 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=58.3
Q ss_pred ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-cCCCCCHHHHHHHHHHhh---ccCChhHHHHHHHHHH
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACA---QVKGFKLGKEIHGYVL 289 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~---~~g~~~~a~~i~~~~~ 289 (523)
|...|-.|-. .|...|+.+.|..-|.+-.+ .|-.|+. +..+-.++. ....-.++.+++++++
T Consensus 155 d~egW~~Lg~------------~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 155 DAEGWDLLGR------------AYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred CchhHHHHHH------------HHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6678888888 88888888888888888766 3433333 333333322 2233456666666666
Q ss_pred HhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 290 ~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
+.. | -|+.+-.-|-..+...|++ .+|...|+.|.+
T Consensus 221 ~~D--~---------------~~iral~lLA~~afe~g~~--~~A~~~Wq~lL~ 255 (287)
T COG4235 221 ALD--P---------------ANIRALSLLAFAAFEQGDY--AEAAAAWQMLLD 255 (287)
T ss_pred hcC--C---------------ccHHHHHHHHHHHHHcccH--HHHHHHHHHHHh
Confidence 521 1 1333334444566666777 777777777765
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.91 E-value=5.5 Score=37.98 Aligned_cols=98 Identities=15% Similarity=0.228 Sum_probs=75.4
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------CCh--hhHHHHHHhhhhcCCccccchhhccCCchHHHHH
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-------KHL--VSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-------~~~--~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~l 249 (523)
|......+...++..-.....++++...+-.++. |+. ++|--++. .-++++++.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----------------ky~pq~~i~~ 122 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----------------KYDPQKAIYT 122 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----------------ccChHHHHHH
Confidence 5556666677777776667788888888777653 222 34433333 4468899999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 250 f~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
+..=.+-|+-||.+|++.+|+.+.+.++...|.++.-.|+...
T Consensus 123 l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 123 LVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877766543
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=80.80 E-value=20 Score=36.42 Aligned_cols=66 Identities=11% Similarity=-0.046 Sum_probs=34.3
Q ss_pred HHhcCCCCcee--HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh--HHHHHHHHHHhc
Q 035847 122 ISIKFEGNACV--KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL--VNNSLMDFYAKC 197 (523)
Q Consensus 122 ~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~--~~~~li~~~~k~ 197 (523)
++.|..|+... ..+.+...++.|+.+-+.-+++. |..|+.. ...+-+...++.
T Consensus 22 l~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-----------------------ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 22 LDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH-----------------------GAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-----------------------CCCccccCCCcccHHHHHHHC
Confidence 34455554432 33455555666777655555544 4333321 112334555667
Q ss_pred CChHHHHHHHhcC
Q 035847 198 RYLKVAHCKFSKI 210 (523)
Q Consensus 198 g~~~~A~~vf~~m 210 (523)
|+.+.+..+++.-
T Consensus 79 g~~~~v~~Ll~~~ 91 (413)
T PHA02875 79 GDVKAVEELLDLG 91 (413)
T ss_pred CCHHHHHHHHHcC
Confidence 7777777666643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.78 E-value=14 Score=35.14 Aligned_cols=87 Identities=8% Similarity=0.066 Sum_probs=68.3
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP 135 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 135 (523)
-|...|-.|=..|.+.|+...|...|..-.+.. .+-.-+...+..++.++++++++.. .-|+.+..-
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 378999999999999999999999998876543 2222233446778999999999763 335556666
Q ss_pred HHHHHHhcCCHHHHHHHhhh
Q 035847 136 VLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~ 155 (523)
|-..+...|++.+|...|+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred HHHHHHHcccHHHHHHHHHH
Confidence 66889999999999999998
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.59 E-value=5.3 Score=38.06 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=72.6
Q ss_pred hcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-----------HHHHhhccCChHHHHHHHHHHHHhcCCCCc
Q 035847 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYMISIKFEGNA 130 (523)
Q Consensus 62 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 130 (523)
|.......+.+-..++..-.+..+++.+...+-+++... .+.-.+-.-+.+++.-+...-++.|+-||.
T Consensus 56 F~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 56 FERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccch
Confidence 333334566677777777777788899998888877654 222233345677888888999999999999
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
++++.||+.+.+.++..+|.++.-.
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999999999887766
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=80.39 E-value=5.6 Score=33.51 Aligned_cols=124 Identities=12% Similarity=0.201 Sum_probs=72.6
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCCCCCCCCHHH
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSSAEPCNPDI 391 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~~ 391 (523)
..|+.-..+ .+.|+. ++|.+.|+.+...|-..|- ...---++.+|-+.|++++|...+++ +.+.|+.. +++-
T Consensus 12 ~ly~~a~~~-l~~~~Y--~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp---~vdY 85 (142)
T PF13512_consen 12 ELYQEAQEA-LQKGNY--EEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP---NVDY 85 (142)
T ss_pred HHHHHHHHH-HHhCCH--HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC---CccH
Confidence 344444444 466788 9999999999987644444 35556788899999999999988887 34556433 3333
Q ss_pred HHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCC
Q 035847 392 AEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR 445 (523)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd 445 (523)
+... +.+.-...+.+.+..|..-++.......++..+++|+++--+.-|.||
T Consensus 86 a~Y~--~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 86 AYYM--RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHH--HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 3210 011000111123334444455566677777777776665444444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.21 E-value=66 Score=32.01 Aligned_cols=106 Identities=10% Similarity=0.003 Sum_probs=67.5
Q ss_pred CCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChh--hHHHHHHhhhhcCCccccchhhccCCchHHHHHHH
Q 035847 180 LESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIK-----QKHLV--SWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251 (523)
Q Consensus 180 ~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~-----~~~~~--t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~ 251 (523)
..|. ...+.+.+...|..|+++.|.++.+.-. +||+. .-..|+.+-+ .-.-.-+...|...-.
T Consensus 183 ~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA---------~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 183 KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA---------MSLLDADPASARDDAL 253 (531)
T ss_pred hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH---------HHHhcCChHHHHHHHH
Confidence 3443 4567889999999999999999998754 35553 3444555211 1111234555555444
Q ss_pred HHHhcCCCCCHHH-HHHHHHHhhccCChhHHHHHHHHHHHhcCCch
Q 035847 252 RMIQTDMQPNTIS-LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296 (523)
Q Consensus 252 ~M~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~ 296 (523)
+-. .+.||.+- -...-.++.+.|++.++-.|++.+.+..-.|+
T Consensus 254 ~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 254 EAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 333 35566433 22344578889999999999999988655444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 523 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 70/565 (12%), Positives = 145/565 (25%), Gaps = 207/565 (36%)
Query: 31 RCPKLNNLE---LGIQVHAHLIVCG----------VELCAFLGMFEKMPERNVFSWTSMM 77
R L L ++ ++++ G +++C + KM +F W ++
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKIF-WLNL- 189
Query: 78 GMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVL 137
N E++ ID D+ +IK ++ L
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRS-------------DHSSNIKLRIHSIQAE--L 234
Query: 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
+ K + N LL + L ++++ N + C
Sbjct: 235 RRL------------LKSKPYEN-CLL-----V----L--LNVQNAKAWN--AFNL--SC 266
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT------GFTQYGDGETALEFFS 251
+ L L + + + I+ T E
Sbjct: 267 KIL--------------LTTRFKQVTDFLSAATTTHISLDHHSMTLT---PDEVK----- 304
Query: 252 RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT 311
+L + L +E VL + + +++I
Sbjct: 305 ---------------SLLLKYLDCRPQDLPRE----VLTTNPRR-----LSII------- 333
Query: 312 GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
S+ D + W++ K +E ++ + R FD
Sbjct: 334 ----AESIRDGLAT------WDNWKHVNCDKLTTIIESSLNV---LEPAEYRK-MFDRLS 379
Query: 372 NFMK--KMP--------FEPSSAEPCNPDIAEH-AARHLFELEPLSSG-KVHSFIAGDTS 419
F +P F+ ++ + L E +P S + S I +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDV--MVVVNKLHKYSLVEKQPKESTISIPS-IYLELK 436
Query: 420 HSL-----VHKISEKLMRLYSEIKK------------------IGY-MKRIPACGHSEK- 454
L +H+ ++ Y+ K IG+ +K H E+
Sbjct: 437 VKLENEYALHR---SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK---NIEHPERM 490
Query: 455 -------LALAF--------GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERER 499
L F + GS L ++ L+ Y + +
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK---------FYKPYICDNDPKY 541
Query: 500 EIIMIDNYRF-----HHFVDGACSC 519
E ++ F + + +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 9e-05
Identities = 35/212 (16%), Positives = 61/212 (28%), Gaps = 72/212 (33%)
Query: 59 LGMFE---KMPERNVFS--WTSMMGMYNVLGYYEEIVNLF--YLLID----EGVY----- 102
L +F +P + S W ++ +V +VN Y L++ E
Sbjct: 378 LSVFPPSAHIPT-ILLSLIWFDVIK-SDV----MVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 103 -----KACSELKD-HRVGKDVYDYMISIKFEGNACVKRPVLDMFI---------KCGRME 147
HR V Y I F+ + + P LD + E
Sbjct: 432 YLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPE 488
Query: 148 MASGEFEEK--DF------------------SNLSLL----KHGKEIHPHHLKKDDLESD 183
+ F DF S L+ L + I + K + L +
Sbjct: 489 RMT-LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
++DF K + K++ + + L
Sbjct: 548 ------ILDFLPKIEE-NLICSKYTDLLRIAL 572
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 523 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.86 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.83 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.77 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.75 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.75 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.67 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.61 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.6 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.6 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.59 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.58 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.57 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.56 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.51 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.51 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.47 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.45 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.43 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.43 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.42 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.41 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.37 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.23 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.21 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.21 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.2 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.2 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.17 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.17 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.15 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.15 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.15 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.15 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.15 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.14 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.14 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.14 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.13 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.13 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.12 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.08 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.04 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.02 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.02 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.01 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.0 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.0 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.0 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.98 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.97 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.95 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.95 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.92 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.86 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.81 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.79 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.79 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.79 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.78 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.77 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.77 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.76 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.73 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.72 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.64 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.6 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.59 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.58 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.53 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.52 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.52 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.48 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.46 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.43 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.39 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.35 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.35 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.33 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.33 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.19 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.1 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.1 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.07 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.02 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.01 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.97 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 97.96 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 97.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 97.94 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.92 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.9 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.89 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.89 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.85 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.82 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.8 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.78 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.75 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.75 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.75 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.73 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.73 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.73 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.69 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.69 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.67 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.65 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.61 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.57 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.53 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.47 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.45 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.44 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.43 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.42 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.39 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.36 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.33 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.28 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.24 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.23 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.2 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.2 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.18 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.17 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.17 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.15 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.11 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.1 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.07 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.06 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.03 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.03 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.02 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 96.99 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 96.99 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 96.98 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 96.96 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 96.96 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 96.93 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 96.93 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 96.91 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 96.87 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 96.77 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 96.76 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 96.74 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.71 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.7 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 96.7 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 96.69 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 96.67 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 96.61 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 96.57 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 96.53 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 96.46 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 96.41 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 96.4 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.38 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.35 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.3 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 96.19 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 96.12 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.09 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.05 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.04 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 95.91 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 95.8 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 95.7 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 95.7 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 95.66 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 95.48 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 95.4 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 95.17 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 95.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 95.09 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 94.94 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.85 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 94.7 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 94.68 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 94.67 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.63 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 94.57 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.49 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.44 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 94.36 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.15 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 94.1 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.8 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 93.67 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 93.66 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 93.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 92.94 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 91.9 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.69 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 90.46 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 90.2 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 90.06 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.0 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 89.84 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 88.42 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 87.16 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 86.03 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 85.42 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.71 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 83.27 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 83.22 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.04 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 82.57 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.12 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 80.7 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.5 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=275.59 Aligned_cols=202 Identities=10% Similarity=0.097 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHhcCCCCc-eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHH
Q 035847 113 VGKDVYDYMISIKFEGNA-CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM 191 (523)
Q Consensus 113 ~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li 191 (523)
.++.+...+.+.+..+.+ .+++.+|++|+|.|++++|+++|++ |+..|+.||..+||+||
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~-------------------M~~~Gv~pd~~tyn~Li 68 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDE-------------------ARRNGVQLSQYHYNVLL 68 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHH-------------------HHHHTCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-------------------HHHcCCCCCHhHHHHHH
Confidence 345555666666665543 4689999999999999999999999 88779999999999999
Q ss_pred HHHHhcCC---------hHHHHHHHhcCC----CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC
Q 035847 192 DFYAKCRY---------LKVAHCKFSKIK----QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258 (523)
Q Consensus 192 ~~~~k~g~---------~~~A~~vf~~m~----~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~ 258 (523)
++|++.+. ++.|.++|++|. .||.+|||+||. +|++.|++++|+++|++|.+.|+
T Consensus 69 ~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~------------~~~~~g~~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 69 YVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR------------LAVAKDDPEMAFDMVKQMKAFGI 136 (501)
T ss_dssp HHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH------------HHHhcCCHHHHHHHHHHHHHcCC
Confidence 99998765 688999999996 489999999999 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHH
Q 035847 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338 (523)
Q Consensus 259 ~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~ 338 (523)
.||..||++||.+|++.|++++|.++++.|.+.|+.| |..|||+||++|++.|+. ++|.++|
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P----------------d~~ty~~Li~~~~~~g~~--d~A~~ll 198 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP----------------EEPELAALLKVSMDTKNA--DKVYKTL 198 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC----------------CHHHHHHHHHHHHHTTCH--HHHHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------------CHHHHHHHHHHHhhCCCH--HHHHHHH
Confidence 9999999999999999999999999999999997755 679999999999999999 9999999
Q ss_pred HHhHHhcCCccCHhHHHHHHHHHHhh
Q 035847 339 EMMKKEYNMEPAMEQYCCMVDLLARA 364 (523)
Q Consensus 339 ~~m~~~~g~~p~~~ty~~li~~~~~~ 364 (523)
++|++. |+.|+..||+.++..+++.
T Consensus 199 ~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 199 QRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999998 9999999999999999864
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-31 Score=272.32 Aligned_cols=211 Identities=11% Similarity=0.030 Sum_probs=177.7
Q ss_pred HHHHHHHHhhhCCCCCC-cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhc
Q 035847 5 NVTLLLQSMDLTNPDEC-TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83 (523)
Q Consensus 5 ~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~ 83 (523)
.+..+.+++++.++.+. ...++.+|++|++.|++++|.++|++|.+.|+ .||++|||+||.+|++.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv-------------~pd~~tyn~Li~~c~~~ 74 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGV-------------QLSQYHYNVLLYVCSLA 74 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTC-------------CCCHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------------CCCHhHHHHHHHHHHhC
Confidence 45667788888887654 35689999999999999999999999999999 89999999999999988
Q ss_pred CCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCc
Q 035847 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163 (523)
Q Consensus 84 g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 163 (523)
+...++ ...++++.|.++|++|.+.|+.||..|||+||++|++.|++++|.++|++
T Consensus 75 ~~~~~~----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~-------- 130 (501)
T 4g26_A 75 EAATES----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQ-------- 130 (501)
T ss_dssp CCCSSS----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHH--------
T ss_pred Cchhhh----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------
Confidence 875432 12234566677777777778999999999999999999999999999999
Q ss_pred hhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHhhhhcCCccccchhhc
Q 035847 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK----QKHLVSWNAMLAGYALGGFREEITGFTQ 239 (523)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~----~~~~~t~~~li~~~~~~g~~~~i~~~~~ 239 (523)
|+..|+.||..+||+||.+|++.|++++|.++|++|. .||..|||+||. +|++
T Consensus 131 -----------M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~------------~~~~ 187 (501)
T 4g26_A 131 -----------MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK------------VSMD 187 (501)
T ss_dssp -----------HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH------------HHHH
T ss_pred -----------HHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH------------HHhh
Confidence 8887999999999999999999999999999999996 499999999999 9999
Q ss_pred cCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Q 035847 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275 (523)
Q Consensus 240 ~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 275 (523)
.|++++|.++|++|.+.|+.|+..||++++..|+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=265.12 Aligned_cols=366 Identities=9% Similarity=-0.062 Sum_probs=234.1
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH------------------Hhc
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------------------~f~ 63 (523)
.+++|+.+|++|.. ..||..++..+..+|.+.|+++.|..+++.+... .++..+. +|+
T Consensus 99 ~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 99 QYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLG 174 (597)
T ss_dssp CHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred CchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHh
Confidence 36789999999984 4678889999999999999999999999887543 2222222 777
Q ss_pred C-CCCC------------------CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------H--------------
Q 035847 64 K-MPER------------------NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------V-------------- 101 (523)
Q Consensus 64 ~-~~~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------l-------------- 101 (523)
+ +|.. ++.+|+.++.+|.+.|++++|+++|++|.+.+ +
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (597)
T 2xpi_A 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL 254 (597)
T ss_dssp SSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHH
T ss_pred ccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHH
Confidence 3 3333 47889999999999999999999999887654 1
Q ss_pred ------------------------HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhcc
Q 035847 102 ------------------------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157 (523)
Q Consensus 102 ------------------------l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 157 (523)
+..|.+.|++++|.++|+.+.+. .++..+++.++.+|.+.|++++|..+|++
T Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-- 330 (597)
T 2xpi_A 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTK-- 330 (597)
T ss_dssp HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHH--
T ss_pred HHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHH--
Confidence 33445677888888888888765 57888899999999999999999999888
Q ss_pred ccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCcccc
Q 035847 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEI 234 (523)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i 234 (523)
+.. .-..+..+++.++.+|.+.|+.++|..+|+.+.+ .+..+|+.++.
T Consensus 331 -----------------~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~----------- 381 (597)
T 2xpi_A 331 -----------------ILE-IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI----------- 381 (597)
T ss_dssp -----------------HHH-HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH-----------
T ss_pred -----------------HHH-cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH-----------
Confidence 222 1122455566666666666666666666665532 34455666666
Q ss_pred chhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcc
Q 035847 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF 314 (523)
Q Consensus 235 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~ 314 (523)
.|.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|.++++.+.+.+ +++..
T Consensus 382 -~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------~~~~~ 442 (597)
T 2xpi_A 382 -YYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-----------------QGTHL 442 (597)
T ss_dssp -HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------------TTCSH
T ss_pred -HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------ccchH
Confidence 5556666666666666665431 1234556666666666666666666666655421 12445
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC-------CCCCCCC---
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM-------PFEPSSA--- 384 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~--- 384 (523)
+|+.++.+|.+.|++ ++|.++|+.|.+. ...+..+|+.++.+|.+.|++++|.++++++ +..|+..
T Consensus 443 ~~~~l~~~~~~~g~~--~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNI--LLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp HHHHHHHHHHHHTCH--HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 555555556666655 5566666555543 1223555555666666666666655555554 3344421
Q ss_pred ---------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHH
Q 035847 385 ---------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKIS 427 (523)
Q Consensus 385 ---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (523)
..|+.+.|...++++++..|.++..+..+...+...|+.+++.
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 4555555555555566656655555555555555556666554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=258.00 Aligned_cols=403 Identities=9% Similarity=-0.065 Sum_probs=276.9
Q ss_pred CCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc
Q 035847 20 ECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE 99 (523)
Q Consensus 20 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 99 (523)
++...|+.++..+.+.|+++.|..+++.+... .||..+|+.+..+|.+.|++++|+.+|+++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 146 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---------------TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY 146 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---------------CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc
Confidence 57788999999999999999999999999854 467789999999999999999999999998433
Q ss_pred c--------HHHHhhccCChHHHHHHHHHHH-Hh--------------cCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc
Q 035847 100 G--------VYKACSELKDHRVGKDVYDYMI-SI--------------KFEGNACVKRPVLDMFIKCGRMEMASGEFEEK 156 (523)
Q Consensus 100 g--------ll~~~~~~~~~~~a~~~~~~m~-~~--------------g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~ 156 (523)
. ++.++.+.|++++|.++|+.+. .. |..++..+|+.++.+|.+.|++++|..+|+++
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 8889999999999999998532 11 22335789999999999999999999999984
Q ss_pred cccccCchhhH------------------hhH-hhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh
Q 035847 157 DFSNLSLLKHG------------------KEI-HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL 215 (523)
Q Consensus 157 ~~~~~~~~~~~------------------~~~-~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~ 215 (523)
.-........- ..+ +..+... +..++..+|+.++.+|.+.|++++|.++|+++.+ ++.
T Consensus 227 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 305 (597)
T 2xpi_A 227 LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE-DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG-GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCH
T ss_pred HHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc-hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchH
Confidence 11111111000 000 1111111 2233334445555555555555555555555554 455
Q ss_pred hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCc
Q 035847 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~ 295 (523)
.+|+.++. .|.+.|++++|+++|++|.+.+. .+..+++.++.++.+.|+.++|.++++.+.+. .+.
T Consensus 306 ~~~~~l~~------------~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 371 (597)
T 2xpi_A 306 DLLLCKAD------------TLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPE 371 (597)
T ss_dssp HHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHH------------HHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Ccc
Confidence 55555555 55555555555555555554331 24445555555555555555555555555532 233
Q ss_pred hHHHHhHHHhhh-----------------CC-CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHH
Q 035847 296 STGVGIALISIQ-----------------GL-GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357 (523)
Q Consensus 296 ~~~~~~~li~~y-----------------~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~l 357 (523)
+..+++.+..+| .+ +.+..+|+.++.+|.+.|+. ++|.++|++|.+. ..++..+|..+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~--~~~~~~~~~~l 447 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH--DQAISAYTTAARL--FQGTHLPYLFL 447 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHT--TTTCSHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh--CccchHHHHHH
Confidence 344555555444 22 34577999999999999999 9999999999864 24578999999
Q ss_pred HHHHHhhCCHHHHHHHHHhCC-CCCCCC-----------CCCCHHHHHHHHHHHHhhC------CCC-CcceeEEEecCC
Q 035847 358 VDLLARAGQFDDTLNFMKKMP-FEPSSA-----------EPCNPDIAEHAARHLFELE------PLS-SGKVHSFIAGDT 418 (523)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m~-~~p~~~-----------~~~~~~~~~~~~~~l~~~~------~~~-~~~~~~~~~~~~ 418 (523)
..+|.+.|++++|.++++++. ..|+.. ..|+.+.|...++++++.. |.+ ...+..+...+.
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 999999999999999999973 445544 7899999999999999884 332 346777777888
Q ss_pred CCchHHHHHHHHHHHHHHHHHcCCcCCc--------hhhhhhHHHHHHHccc
Q 035847 419 SHSLVHKISEKLMRLYSEIKKIGYMKRI--------PACGHSEKLALAFGLI 462 (523)
Q Consensus 419 ~~~~~~~~~~~l~~l~~~m~~~g~~pd~--------~~~~~~~~la~a~~l~ 462 (523)
.+|+.+++. ++++++.+.+ |+. ..+...++.+.|...+
T Consensus 528 ~~g~~~~A~----~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 528 KLKMYDAAI----DALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HTTCHHHHH----HHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHH----HHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 899999986 5556665554 654 2344455555554443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=9.6e-19 Score=175.62 Aligned_cols=333 Identities=10% Similarity=0.078 Sum_probs=267.1
Q ss_pred chhHHHHHHHHhhhCCCCCCc-chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECT-VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMY 80 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~ 80 (523)
.+++|+..|..+.+. .|+. ..+..+-..+...|+++.|...+....+.. ..+..+|+.+...|
T Consensus 14 ~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--------------p~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--------------PLLAEAYSNLGNVY 77 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------CCchHHHHHHHHHH
Confidence 468899999888765 4554 455555566778899999999998888764 34778999999999
Q ss_pred HhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHH
Q 035847 81 NVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMAS 150 (523)
Q Consensus 81 ~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~ 150 (523)
.+.|++++|++.|+++.+.. +..++...|++++|.+.+..+++. .|+ ..++..+-..|...|++++|.
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999987654 777788999999999999999876 454 456777888888999999999
Q ss_pred HHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhh
Q 035847 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYAL 227 (523)
Q Consensus 151 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~ 227 (523)
..|++ +.. ..+.+..+|+.+...|.+.|++++|...|+++.+ | +...|..+-.
T Consensus 156 ~~~~~-------------------al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~---- 211 (388)
T 1w3b_A 156 ACYLK-------------------AIE-TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN---- 211 (388)
T ss_dssp HHHHH-------------------HHH-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH----
T ss_pred HHHHH-------------------HHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH----
Confidence 99998 332 1223567889999999999999999999998753 4 4457777777
Q ss_pred cCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhh
Q 035847 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306 (523)
Q Consensus 228 ~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 306 (523)
.+...|++++|+..|++.... .| +..++..+..++.+.|++++|.+.++.+.+..
T Consensus 212 --------~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 267 (388)
T 1w3b_A 212 --------VLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-------------- 267 (388)
T ss_dssp --------HHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------------
T ss_pred --------HHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 888899999999999988774 35 46788888899999999999999999988742
Q ss_pred hCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-
Q 035847 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA- 384 (523)
Q Consensus 307 y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 384 (523)
+.+..+|+.+...|.+.|+. ++|..+|+++.+. ..++..+|..+...+.+.|++++|.+.++++ ...|+..
T Consensus 268 ---p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 268 ---PHFPDAYCNLANALKEKGSV--AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp ---SSCHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred ---CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 12345788899999999999 9999999999875 3456788999999999999999999999885 4556654
Q ss_pred ----------CCCCHHHHHHHHHHHHhhCCCCC
Q 035847 385 ----------EPCNPDIAEHAARHLFELEPLSS 407 (523)
Q Consensus 385 ----------~~~~~~~~~~~~~~l~~~~~~~~ 407 (523)
..|+.+.|...+++.+++.|.+.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 56777777777777777666543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-18 Score=170.25 Aligned_cols=310 Identities=15% Similarity=0.110 Sum_probs=261.7
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
++++|..+++...+. .+.+..+|..+..++.+.|++++|...++.+.+.. ..+..+|..+...+.
T Consensus 48 ~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~ 112 (388)
T 1w3b_A 48 RLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--------------PDFIDGYINLAAALV 112 (388)
T ss_dssp CHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------------cchHHHHHHHHHHHH
Confidence 357788888877664 34577899999999999999999999999998763 235668999999999
Q ss_pred hcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 82 VLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
+.|++++|++.|+++.+.. +-..+...|++++|.+.+..+++.. +.+..+|+.+...|.+.|++++|...
T Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999987654 5667778899999999999999873 33577899999999999999999999
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHhhhhcC
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QK-HLVSWNAMLAGYALGG 229 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~~~g 229 (523)
|++ ... --+.+...|..+-..+.+.|++++|...|++.. .| +..+|+.+..
T Consensus 192 ~~~-------------------al~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~------ 245 (388)
T 1w3b_A 192 FEK-------------------AVT-LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC------ 245 (388)
T ss_dssp HHH-------------------HHH-HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH------
T ss_pred HHH-------------------HHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH------
Confidence 999 322 112346788899999999999999999998764 24 5678999999
Q ss_pred CccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhC
Q 035847 230 FREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308 (523)
Q Consensus 230 ~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 308 (523)
.|.+.|++++|++.|+++.+. .| +..+|..+..++.+.|++++|.+.++.+.+..
T Consensus 246 ------~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------- 301 (388)
T 1w3b_A 246 ------VYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---------------- 301 (388)
T ss_dssp ------HHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC----------------
T ss_pred ------HHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------
Confidence 999999999999999999885 34 46789999999999999999999999998742
Q ss_pred CCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCC
Q 035847 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSS 383 (523)
Q Consensus 309 ~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 383 (523)
+++..+|+.+...|...|+. ++|..+|+++.+. .|+ ..++..+...|.+.|++++|.+.++++ ...|+.
T Consensus 302 -p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 302 -PTHADSLNNLANIKREQGNI--EEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCH--HHHHHHHHHHTTS---CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred -cccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 33667899999999999999 9999999999753 454 789999999999999999999999885 455643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=192.20 Aligned_cols=132 Identities=11% Similarity=-0.014 Sum_probs=117.7
Q ss_pred hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh---cCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ---TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~---~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
.|||+||. +||+.|++++|.++|++|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|
T Consensus 128 ~TynaLId------------glcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G 195 (1134)
T 3spa_A 128 QRLLAFFK------------CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195 (1134)
T ss_dssp HHHHHHHH------------HHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH------------HHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 59999999 99999999999999988764 6899999999999999999999999999999999997
Q ss_pred CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHH
Q 035847 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372 (523)
Q Consensus 293 ~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 372 (523)
+.| |++|||+||++||+.|+.. ++|.++|++|.+. |+.||..||++++.+..|.+-++...+
T Consensus 196 ~~P----------------DvvTYntLI~glcK~G~~~-e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 196 LTP----------------DLLSYAAALQCMGRQDQDA-GTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp CCC----------------CHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred CCC----------------cHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHH
Confidence 755 7799999999999999851 5789999999998 999999999999999988876666665
Q ss_pred HHHhC
Q 035847 373 FMKKM 377 (523)
Q Consensus 373 ~~~~m 377 (523)
+..++
T Consensus 258 v~P~f 262 (1134)
T 3spa_A 258 VKPTF 262 (1134)
T ss_dssp GCCCC
T ss_pred hCccc
Confidence 54433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-19 Score=190.50 Aligned_cols=137 Identities=14% Similarity=0.121 Sum_probs=121.2
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHH
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-------QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~-------~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~ 251 (523)
....-..|||+||++|||+|++++|.++|++|. .||++|||+||. +||+.|++++|.++|+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~------------Glck~G~~~eA~~Lf~ 189 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML------------GWARQGAFKELVYVLF 189 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHH------------HHHHHTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHH------------HHHhCCCHHHHHHHHH
Confidence 344557799999999999999999999998764 599999999999 9999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHhhccCCh-hHHHHHHHHHHHhcCCchHHHHhHHHhhh--------------CCCCC----
Q 035847 252 RMIQTDMQPNTISLSGVLAACAQVKGF-KLGKEIHGYVLRHHIQLSTGVGIALISIQ--------------GLGTG---- 312 (523)
Q Consensus 252 ~M~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~y--------------~~~p~---- 312 (523)
+|.+.|+.||.+|||+||.++|+.|.. +.|.+++++|.+.|+.||..+|++++..+ ++.|+
T Consensus 190 eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~ 269 (1134)
T 3spa_A 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269 (1134)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCC
T ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCc
Confidence 999999999999999999999999985 78999999999999999999999888776 33333
Q ss_pred --cchHHHHHHHHHhcC
Q 035847 313 --SFVWNSLIDMYGRCG 327 (523)
Q Consensus 313 --~~~~n~li~~~~~~g 327 (523)
+.+.+.|.+.|.+.+
T Consensus 270 ~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 270 PPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCCTTTHHHHCCCS
T ss_pred ccccchHHHHHHHccCC
Confidence 566667777787766
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-17 Score=165.27 Aligned_cols=304 Identities=11% Similarity=0.035 Sum_probs=224.9
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+..++..+...+.+.|+++.|..++..+.+.. ..+..+|..+...|.+.|++++|+..|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--------------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 44556666666666677777777766666543 2356666666666666677777766666665532
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+.+..++..+...|.+.|++++|...|++ +.. .
T Consensus 91 --------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------------~~~--~ 123 (450)
T 2y4t_A 91 --------------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKK-------------------VLK--S 123 (450)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHT--S
T ss_pred --------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHh--c
Confidence 44677899999999999999999999999 333 2
Q ss_pred CC-ch---hHHHHHHH------------HHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccC
Q 035847 181 ES-DL---LVNNSLMD------------FYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYG 241 (523)
Q Consensus 181 ~~-d~---~~~~~li~------------~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g 241 (523)
.| +. .++..+.. .|.+.|++++|...|+.+.+ .+...|+.+.. .|.+.|
T Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g 191 (450)
T 2y4t_A 124 NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE------------CFIKEG 191 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTT
T ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH------------HHHHCC
Confidence 33 33 55555544 48999999999999998753 46778999999 899999
Q ss_pred CchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHH
Q 035847 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321 (523)
Q Consensus 242 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~ 321 (523)
++++|++.|+++.+.. +.+..++..+...+...|+.++|.+.++.+.+..-.. ...+..+-.. .....+..+..
T Consensus 192 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~----~~~~~~~~~~~ 265 (450)
T 2y4t_A 192 EPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH-KRCFAHYKQV----KKLNKLIESAE 265 (450)
T ss_dssp CGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh-HHHHHHHHHH----HHHHHHHHHHH
Confidence 9999999999998753 3467889999999999999999999999998642111 1111110000 00011223378
Q ss_pred HHHhcCCCchHHHHHHHHHhHHhcCCccC-----HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------
Q 035847 322 MYGRCGAIQKNEGWRYFEMMKKEYNMEPA-----MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA----------- 384 (523)
Q Consensus 322 ~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-----~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----------- 384 (523)
.|...|+. ++|..+|+.+.+. .|+ ..+|..+...+.+.|++++|...++++ ...|+..
T Consensus 266 ~~~~~g~~--~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 266 ELIRDGRY--TDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHTCH--HHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHcCCH--HHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 89999999 9999999999875 455 458899999999999999999999885 4566654
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 385 EPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
..|+.+.|...+++++++.|.++.
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~ 364 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQ 364 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHH
T ss_pred HhcCHHHHHHHHHHHHHhCcchHH
Confidence 789999999999999999998765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-16 Score=163.82 Aligned_cols=338 Identities=10% Similarity=-0.000 Sum_probs=264.2
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
++++|+..|+++.... ||..+|..+..++.+.|+++.|...+..+.+.. ..+..+|..+...|.
T Consensus 21 ~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 21 KYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--------------PDYSKVLLRRASANE 84 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------SCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--------------hHHHHHHHHHHHHHH
Confidence 4689999999999865 799999999999999999999999999999875 246789999999999
Q ss_pred hcCCchHHHHHHHHhhHcc---------H---------------------------------------------------
Q 035847 82 VLGYYEEIVNLFYLLIDEG---------V--------------------------------------------------- 101 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g---------l--------------------------------------------------- 101 (523)
+.|++++|+..|+++...+ +
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999875432 0
Q ss_pred --------------------------HHH--hh---ccCChHHHHHHHHHHHH-----hcCC--------CCceeHhHHH
Q 035847 102 --------------------------YKA--CS---ELKDHRVGKDVYDYMIS-----IKFE--------GNACVKRPVL 137 (523)
Q Consensus 102 --------------------------l~~--~~---~~~~~~~a~~~~~~m~~-----~g~~--------p~~~~~~~li 137 (523)
..+ +. +.|+++.|...++.+.+ ..-. .+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 000 11 37889999999998887 3112 2355778888
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CC
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KH 214 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~ 214 (523)
..|.+.|++++|...|++ +++. .|+..++..+...|.+.|++++|...|+...+ .+
T Consensus 245 ~~~~~~~~~~~A~~~~~~------------------~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 303 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKK------------------AIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN 303 (514)
T ss_dssp HHHHHSSCHHHHHHHHHH------------------HHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC
T ss_pred HHHHHCCCHHHHHHHHHH------------------HHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC
Confidence 889999999999999988 1222 23377888889999999999999999887643 35
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
...|..+.. .|.+.|++++|+..|++..+... .+..++..+...+...|++++|.+.+..+.+..
T Consensus 304 ~~~~~~l~~------------~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 368 (514)
T 2gw1_A 304 SSVYYHRGQ------------MNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-- 368 (514)
T ss_dssp THHHHHHHH------------HHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHH------------HHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--
Confidence 667888888 88889999999999999887532 256778888888999999999999998887742
Q ss_pred chHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC----HhHHHHHHHHHHh---hCCH
Q 035847 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA----MEQYCCMVDLLAR---AGQF 367 (523)
Q Consensus 295 ~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~----~~ty~~li~~~~~---~g~~ 367 (523)
+.+..+|..+...|...|+. ++|...|+.+.+...-.|+ ...|..+...+.+ .|++
T Consensus 369 ---------------~~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 369 ---------------PEAPEVPNFFAEILTDKNDF--DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp ---------------TTCSHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred ---------------ccCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 22456788888889999999 9999999888764222222 3378888888888 8999
Q ss_pred HHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 368 DDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 368 ~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
++|...+++. ...|+.. ..|+.+.|...+++.+++.|.++.
T Consensus 432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 9999988874 3445544 678888888888888888877653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-16 Score=158.43 Aligned_cols=290 Identities=8% Similarity=0.008 Sum_probs=233.1
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
.+++|+.+|+++.... +.+..+|..+..++...|+++.|...+..+.+.+ ..+..+|..+...|.
T Consensus 41 ~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 41 QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--------------MDFTAARLQRGHLLL 105 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------CCcHHHHHHHHHHHH
Confidence 3689999999998752 3467889999999999999999999999999875 246789999999999
Q ss_pred hcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCc---eeHhHH------------HHHHHhcCCH
Q 035847 82 VLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNA---CVKRPV------------LDMFIKCGRM 146 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l------------i~~~~~~g~~ 146 (523)
+.|++++|++.|+++.... +.+. .++..+ ...|.+.|++
T Consensus 106 ~~g~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSN--------------------------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HcCCHHHHHHHHHHHHhcC--------------------------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999987643 1122 344444 4458888999
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLA 223 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~ 223 (523)
++|...|++ +.. -...+..++..+..+|.+.|++++|..+|+.+.+ .+..+|+.+..
T Consensus 160 ~~A~~~~~~-------------------~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 219 (450)
T 2y4t_A 160 TAAIAFLDK-------------------ILE-VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 219 (450)
T ss_dssp HHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHH-------------------HHH-hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999988 332 2334678899999999999999999999998753 56789999999
Q ss_pred hhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH-HHHH------------HHHhhccCChhHHHHHHHHHHH
Q 035847 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS-LSGV------------LAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 224 ~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.|.+.|++++|+..|+++... .|+..+ +..+ ..++.+.|++++|...+..+.+
T Consensus 220 ------------~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 220 ------------LYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285 (450)
T ss_dssp ------------HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------------HHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999864 454433 4333 6788999999999999999987
Q ss_pred hcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc-CHhHHHHHHHHHHhhCCHHH
Q 035847 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP-AMEQYCCMVDLLARAGQFDD 369 (523)
Q Consensus 291 ~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~ 369 (523)
.. |+.... ....|..+...|.+.|+. ++|..+++.+.+. .| +...|..+..+|...|++++
T Consensus 286 ~~--p~~~~~-----------~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~ 347 (450)
T 2y4t_A 286 TE--PSIAEY-----------TVRSKERICHCFSKDEKP--VEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDE 347 (450)
T ss_dssp HC--CSSHHH-----------HHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cC--CcchHH-----------HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHH
Confidence 42 210000 034788899999999999 9999999998865 34 57899999999999999999
Q ss_pred HHHHHHhC-CCCCCCC
Q 035847 370 TLNFMKKM-PFEPSSA 384 (523)
Q Consensus 370 A~~~~~~m-~~~p~~~ 384 (523)
|...+++. ...|+..
T Consensus 348 A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 348 AIQDYETAQEHNENDQ 363 (450)
T ss_dssp HHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHhCcchH
Confidence 99999985 5666543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-15 Score=152.24 Aligned_cols=358 Identities=11% Similarity=0.014 Sum_probs=265.9
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--- 100 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--- 100 (523)
.+...-..+.+.|+++.|...+..+.+. .||..+|..+..+|.+.|++++|+..|+++.+.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 72 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALEL---------------KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY 72 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc---------------CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH
Confidence 4555566777899999999999999986 3688999999999999999999999999988765
Q ss_pred ------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHh---------------------
Q 035847 101 ------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF--------------------- 153 (523)
Q Consensus 101 ------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------------- 153 (523)
+..++...|++++|.+.++.+.+.+ +++......++..+.+......+...+
T Consensus 73 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 151 (514)
T 2gw1_A 73 SKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH
Confidence 6778889999999999999998775 233333333333222211111111000
Q ss_pred ---------------------------------------hhc----cccccCchhhHhhHhhhhhh-----c---CCC--
Q 035847 154 ---------------------------------------EEK----DFSNLSLLKHGKEIHPHHLK-----K---DDL-- 180 (523)
Q Consensus 154 ---------------------------------------~~~----~~~~~~~~~~~~~~~~~~~~-----~---~g~-- 180 (523)
..+ .....+.++.+...+..+++ . ...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 231 (514)
T 2gw1_A 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231 (514)
T ss_dssp -----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred HhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc
Confidence 000 00113444444444444444 1 000
Q ss_pred --CCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 181 --ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 181 --~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
..+..++..+...|.+.|++++|...|+... .|+..+|..+.. .|.+.|++++|++.|++....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~------------~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMAL------------IMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHH------------HHHTSSCCTTGGGHHHHHHTT
T ss_pred cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHH------------HHHHCCCHHHHHHHHHHHhhc
Confidence 2346788889999999999999999999875 355677888888 889999999999999999875
Q ss_pred CCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHH
Q 035847 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWR 336 (523)
Q Consensus 257 g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~ 336 (523)
. +.+..++..+...+...|+.++|...+..+.+.. +.+..+|..+...|...|+. ++|..
T Consensus 300 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~--~~A~~ 359 (514)
T 2gw1_A 300 D-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-----------------PENIFPYIQLACLAYRENKF--DDCET 359 (514)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-----------------SSCSHHHHHHHHHTTTTTCH--HHHHH
T ss_pred C-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----------------hhhHHHHHHHHHHHHHcCCH--HHHHH
Confidence 3 2356788889999999999999999999988742 23566889999999999999 99999
Q ss_pred HHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC----CCCCCC-----C---------C---CCCHHHHHHH
Q 035847 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM----PFEPSS-----A---------E---PCNPDIAEHA 395 (523)
Q Consensus 337 ~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m----~~~p~~-----~---------~---~~~~~~~~~~ 395 (523)
+|+.+.+. ...+...+..+...+.+.|++++|...+++. +-.|+. . . .|+.+.|...
T Consensus 360 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 360 LFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 99999875 2334678899999999999999999998875 222321 1 5 7999999999
Q ss_pred HHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHH
Q 035847 396 ARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLM 431 (523)
Q Consensus 396 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (523)
+++.++..|.+...+..+...+...|+.+++...++
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999887666555555666777777754433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-14 Score=147.94 Aligned_cols=231 Identities=13% Similarity=0.080 Sum_probs=176.9
Q ss_pred chhhHhhHhhhhhhcCCCCCc--------hhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCcc
Q 035847 163 LLKHGKEIHPHHLKKDDLESD--------LLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFRE 232 (523)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~d--------~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~ 232 (523)
.++.+..++..+++. .|+ ..++..+-..+...|++++|...|+... .|+..+|..+..
T Consensus 217 ~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~--------- 284 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLAL--------- 284 (537)
T ss_dssp HHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHH---------
Confidence 344455555555544 333 3356677788888999999999998875 467778888888
Q ss_pred ccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCC
Q 035847 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312 (523)
Q Consensus 233 ~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~ 312 (523)
.|.+.|++++|++.|++..+.. +.+..++..+...+...|+++.|.+.++.+.+.. +.+
T Consensus 285 ---~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~ 343 (537)
T 3fp2_A 285 ---TLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-----------------PEN 343 (537)
T ss_dssp ---HTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTC
T ss_pred ---HHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----------------CCC
Confidence 8889999999999999988753 2357788888889999999999999999988743 224
Q ss_pred cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCC---CCC----
Q 035847 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEP---SSA---- 384 (523)
Q Consensus 313 ~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~---- 384 (523)
...|..+...|...|+. ++|..+|+...+. . ..+...+..+...+.+.|++++|.+.+++. ...| +..
T Consensus 344 ~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKF--TESEAFFNETKLK-F-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp SHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH-C-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 56888999999999999 9999999999875 1 334678889999999999999999998884 1112 211
Q ss_pred ----------CC----------CCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHH
Q 035847 385 ----------EP----------CNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKL 430 (523)
Q Consensus 385 ----------~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 430 (523)
.. ++.+.|...+++.++..|.+...+..+...+...|+.+++...+
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 11 88888999999999999988876666666666778888876443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-13 Score=130.31 Aligned_cols=282 Identities=11% Similarity=0.019 Sum_probs=223.7
Q ss_pred CCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 035847 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL 96 (523)
Q Consensus 17 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 96 (523)
+.+.+...+..+...+...|+++.|..+++.+.+.. ..+..++..+...+.+.|++++|+.+|+++
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 82 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--------------PFHASCLPVHIGTLVELNKANELFYLSHKL 82 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------CCChhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345567778888888888999999999999998775 246678888889999999999999999998
Q ss_pred hHcc---------HHHHhhccC-ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhh
Q 035847 97 IDEG---------VYKACSELK-DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166 (523)
Q Consensus 97 ~~~g---------ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 166 (523)
.... +...+...| +.+.|.+.+....+.. +.+..+|..+...|...|++++|...|++
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----------- 150 (330)
T 3hym_B 83 VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFT----------- 150 (330)
T ss_dssp HHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHH-----------
T ss_pred HHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHH-----------
Confidence 7754 666677888 9999999999998764 34577899999999999999999999998
Q ss_pred HhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCc
Q 035847 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDG 243 (523)
Q Consensus 167 ~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~ 243 (523)
... -...+..++..+...|.+.|++++|...|+...+ .+...|..+.. .+.+.|++
T Consensus 151 --------a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~------------~~~~~~~~ 209 (330)
T 3hym_B 151 --------AAQ-LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGV------------VAFQNGEW 209 (330)
T ss_dssp --------HHH-HTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH------------HHHHTTCH
T ss_pred --------HHH-hccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHH------------HHHHcccH
Confidence 322 1223456777799999999999999999998653 45678888888 88999999
Q ss_pred hHHHHHHHHHHhcC--------CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 244 ETALEFFSRMIQTD--------MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 244 ~~A~~lf~~M~~~g--------~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
++|...|++..+.. ...+..++..+...+...|+.++|...++...+.. +.+...
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----------------~~~~~~ 272 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-----------------PQNAST 272 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------TTCSHH
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-----------------ccchHH
Confidence 99999999987632 13345688888888999999999999998887743 225567
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHH-HhhCCH
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLL-ARAGQF 367 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~-~~~g~~ 367 (523)
|..+...|...|+. ++|..+|+...+ +.|+ ...+..+..++ ...|+.
T Consensus 273 ~~~la~~~~~~g~~--~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 273 YSAIGYIHSLMGNF--ENAVDYFHTALG---LRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHTCH--HHHHHHHHTTTT---TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHc---cCCCchHHHHHHHHHHHHHhCch
Confidence 88888899999999 999999988764 3564 56666676666 445554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-12 Score=129.07 Aligned_cols=293 Identities=7% Similarity=0.008 Sum_probs=230.9
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG- 100 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 100 (523)
...+..+-..+...|+++.|...+..+.+.. ..+..+|..+...|.+.|++++|+..|++..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 68 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--------------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM 68 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3456667777888999999999999998864 2467889999999999999999999999987654
Q ss_pred --------HHHHhhccCChHHHHHHHHHHHHhcCCC----CceeHhHH------------HHHHHhcCCHHHHHHHhhhc
Q 035847 101 --------VYKACSELKDHRVGKDVYDYMISIKFEG----NACVKRPV------------LDMFIKCGRMEMASGEFEEK 156 (523)
Q Consensus 101 --------ll~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~A~~~f~~~ 156 (523)
+...+...|+.++|.+.+....+. .| +...+..+ ...+...|++++|...|++
T Consensus 69 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~- 145 (359)
T 3ieg_A 69 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK- 145 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred CcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH-
Confidence 677788899999999999999875 34 44455444 4788899999999999998
Q ss_pred cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccc
Q 035847 157 DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREE 233 (523)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~ 233 (523)
... -.+.+..++..+...|.+.|++++|...|+...+ .+..+|..+..
T Consensus 146 ------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~---------- 196 (359)
T 3ieg_A 146 ------------------ILE-VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIST---------- 196 (359)
T ss_dssp ------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHH----------
T ss_pred ------------------HHH-hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----------
Confidence 332 2334677899999999999999999999998753 46678888888
Q ss_pred cchhhccCCchHHHHHHHHHHhcCCCCC-HHHHH------------HHHHHhhccCChhHHHHHHHHHHHhcCCchHHHH
Q 035847 234 ITGFTQYGDGETALEFFSRMIQTDMQPN-TISLS------------GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300 (523)
Q Consensus 234 i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~ 300 (523)
.|.+.|++++|...|++..+.. |+ ..++. .+...+.+.|+.++|...+..+.+..-.... .
T Consensus 197 --~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~- 270 (359)
T 3ieg_A 197 --LYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE-Y- 270 (359)
T ss_dssp --HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH-H-
T ss_pred --HHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH-H-
Confidence 8889999999999999998743 33 22222 2255688899999999999998875321100 0
Q ss_pred hHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc-CHhHHHHHHHHHHhhCCHHHHHHHHHhC-C
Q 035847 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP-AMEQYCCMVDLLARAGQFDDTLNFMKKM-P 378 (523)
Q Consensus 301 ~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m-~ 378 (523)
....|..+...|...|+. ++|..+|+...+. .| +...|..+...+.+.|++++|.+.+++. .
T Consensus 271 -----------~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 271 -----------TVRSKERICHCFSKDEKP--VEAIRICSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp -----------HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHHHHHHccCH--HHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 012355677899999999 9999999999875 45 5789999999999999999999999884 3
Q ss_pred CCCC
Q 035847 379 FEPS 382 (523)
Q Consensus 379 ~~p~ 382 (523)
..|+
T Consensus 335 ~~p~ 338 (359)
T 3ieg_A 335 HNEN 338 (359)
T ss_dssp TCTT
T ss_pred cCCC
Confidence 4443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-13 Score=129.44 Aligned_cols=294 Identities=12% Similarity=0.042 Sum_probs=227.3
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM 139 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 139 (523)
|+..|..+-..+.+.|++++|+..|++..... +...+...|+++.|...++.+++.. +.+..++..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 45677888889999999999999999987654 6677788999999999999999874 3367789999999
Q ss_pred HHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC----chhHHHHH------------HHHHHhcCChHHH
Q 035847 140 FIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES----DLLVNNSL------------MDFYAKCRYLKVA 203 (523)
Q Consensus 140 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----d~~~~~~l------------i~~~~k~g~~~~A 203 (523)
|.+.|++++|...|++ ... ..| +...+..+ ...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~-------------------~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKK-------------------VLK--SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHHHTCHHHHHHHHHH-------------------HHT--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCChHHHHHHHHH-------------------HHh--cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 9999999999999999 322 233 33444444 5788999999999
Q ss_pred HHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhH
Q 035847 204 HCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280 (523)
Q Consensus 204 ~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~ 280 (523)
...|+...+ .+...|..+.. .+.+.|++++|+..|++..+.. +.+..++..+...+...|+.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 140 ITFLDKILEVCVWDAELRELRAE------------CFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999998753 45677888888 8899999999999999998753 3467888899999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH-----hHHH
Q 035847 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM-----EQYC 355 (523)
Q Consensus 281 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~-----~ty~ 355 (523)
|.+.+....+..-.... .+..+.. .........+...+.+.|+. ++|...|+...+. .|+. ..|.
T Consensus 207 A~~~~~~a~~~~~~~~~-~~~~~~~----~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~---~~~~~~~~~~~~~ 276 (359)
T 3ieg_A 207 SLSEVRECLKLDQDHKR-CFAHYKQ----VKKLNKLIESAEELIRDGRY--TDATSKYESVMKT---EPSVAEYTVRSKE 276 (359)
T ss_dssp HHHHHHHHHHHCTTCHH-HHHHHHH----HHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---CCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchH-HHHHHHH----HHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhc---CCCchHHHHHHHH
Confidence 99999999875322111 0000000 00001122346678999999 9999999999876 3442 3355
Q ss_pred HHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCC
Q 035847 356 CMVDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSS 407 (523)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~ 407 (523)
.+...+...|++++|.+.+++. ...|+.. ..|+.+.|...+++.+++.|.+.
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 6778999999999999999885 3456555 78999999999999999888765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=137.20 Aligned_cols=267 Identities=10% Similarity=-0.079 Sum_probs=195.8
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM 139 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 139 (523)
+...|..+-..+.+.|++++|+..|+++.+.. +...+...|+++.|.+.+..+++.. +.+..++..+...
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45667777777777888888888887776654 5566667778888888888777764 4577889999999
Q ss_pred HHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C---C
Q 035847 140 FIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K---H 214 (523)
Q Consensus 140 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~---~ 214 (523)
|.+.|++++|...|+++.-..... .......... .. ...+ ...+. .+..+.+.|++++|...|+.+.+ | +
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~-~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 216 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEG-AG-GAGL-GPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSID 216 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTT-GGGCC------------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH-hh-hhcc-cHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCccc
Confidence 999999999999999821000000 0000000000 00 0000 00111 23334488999999999998753 4 4
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
..+|..+.. .|.+.|++++|+..|++..... +.+..++..+...+...|++++|...++.+.+..
T Consensus 217 ~~~~~~l~~------------~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 281 (368)
T 1fch_A 217 PDVQCGLGV------------LFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-- 281 (368)
T ss_dssp HHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 678888988 8899999999999999998753 2357789999999999999999999999988742
Q ss_pred chHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC------------HhHHHHHHHHHH
Q 035847 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA------------MEQYCCMVDLLA 362 (523)
Q Consensus 295 ~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~------------~~ty~~li~~~~ 362 (523)
+.+..+|..+...|.+.|+. ++|...|+...+. .|+ ..+|..+..+|.
T Consensus 282 ---------------~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 282 ---------------PGYIRSRYNLGISCINLGAH--REAVEHFLEALNM---QRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH---HHTC------CCCCCHHHHHHHHHHHH
T ss_pred ---------------CCcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHh---CCCCCCccccccchhhHHHHHHHHHHH
Confidence 22456889999999999999 9999999998764 332 588999999999
Q ss_pred hhCCHHHHHHHHHh
Q 035847 363 RAGQFDDTLNFMKK 376 (523)
Q Consensus 363 ~~g~~~~A~~~~~~ 376 (523)
+.|+.++|..+.++
T Consensus 342 ~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 342 MLGQSDAYGAADAR 355 (368)
T ss_dssp HHTCGGGHHHHHTT
T ss_pred HhCChHhHHHhHHH
Confidence 99999999988764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-12 Score=125.23 Aligned_cols=270 Identities=11% Similarity=0.040 Sum_probs=219.6
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHH
Q 035847 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVL 137 (523)
Q Consensus 67 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 137 (523)
..|...+..+...+...|++++|+++|+++.... +...+...|+.++|..++..+.+.. +.+..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3467788889999999999999999999987665 6677788999999999999999864 44678899999
Q ss_pred HHHHhcC-CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-
Q 035847 138 DMFIKCG-RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K- 213 (523)
Q Consensus 138 ~~~~~~g-~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~- 213 (523)
..|...| ++++|...|++ ... -.+.+..+|..+...|.+.|+.++|...|+...+ |
T Consensus 98 ~~~~~~~~~~~~A~~~~~~-------------------a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 157 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSK-------------------ATT-LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG 157 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHH-------------------HHT-TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhhhhHHHHHHHHHH-------------------HHH-hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc
Confidence 9999999 99999999998 332 1233567899999999999999999999998753 3
Q ss_pred ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
+..+|..+.. .|...|++++|.+.|++..+.. +.+..++..+...+...|++++|...+..+.+..-
T Consensus 158 ~~~~~~~l~~------------~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 158 CHLPMLYIGL------------EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp CSHHHHHHHH------------HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHH------------HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 4567777888 8889999999999999998753 33568888999999999999999999999887421
Q ss_pred CchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHH
Q 035847 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373 (523)
Q Consensus 294 ~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~ 373 (523)
..... .....+..+|..+...|...|+. ++|...|+...+. . ..+...+..+...+.+.|++++|.+.
T Consensus 225 ~~~~~--------~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 225 AIGNE--------VTVDKWEPLLNNLGHVCRKLKKY--AEALDYHRQALVL-I-PQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp TTSCS--------CTTTTCCHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH-S-TTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcccc--------ccccHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhh-C-ccchHHHHHHHHHHHHhccHHHHHHH
Confidence 10000 00023456899999999999999 9999999999875 2 33568899999999999999999999
Q ss_pred HHhC-CCCCC
Q 035847 374 MKKM-PFEPS 382 (523)
Q Consensus 374 ~~~m-~~~p~ 382 (523)
+++. ...|+
T Consensus 293 ~~~al~~~p~ 302 (330)
T 3hym_B 293 FHTALGLRRD 302 (330)
T ss_dssp HHTTTTTCSC
T ss_pred HHHHHccCCC
Confidence 9985 34554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-13 Score=135.43 Aligned_cols=261 Identities=8% Similarity=-0.095 Sum_probs=183.1
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM 139 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 139 (523)
+...|..+...+.+.|++++|+++|+++.... +...+...|++++|.+.++.+++.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34445555555555555555555555554432 4444455555555555555555542 4457889999999
Q ss_pred HHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhc-CCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C---
Q 035847 140 FIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK-DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K--- 213 (523)
Q Consensus 140 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~--- 213 (523)
|.+.|++++|...|+++. ++....... ........+++.+...|.+.|++++|...|+++.+ |
T Consensus 143 ~~~~g~~~~A~~~~~~al-----------~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 211 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWI-----------KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211 (365)
T ss_dssp HHHTTCHHHHHHHHHHHH-----------HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHccccHHHHHHHHHHHH-----------HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc
Confidence 999999999999999820 000000000 00001234455678899999999999999998753 3
Q ss_pred ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
+..+|+.+.. .|.+.|++++|++.|++..+.. +.+..+|..+..++...|++++|.+.++.+.+..
T Consensus 212 ~~~~~~~l~~------------~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 277 (365)
T 4eqf_A 212 DPDLQTGLGV------------LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ- 277 (365)
T ss_dssp CHHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 5778999988 8899999999999999998753 3357889999999999999999999999998752
Q ss_pred CchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-------------HhHHHHHHHH
Q 035847 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-------------MEQYCCMVDL 360 (523)
Q Consensus 294 ~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-------------~~ty~~li~~ 360 (523)
+.+..+|..+...|...|+. ++|...|+...+. .|+ ...|..+..+
T Consensus 278 ----------------p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (365)
T 4eqf_A 278 ----------------PGFIRSRYNLGISCINLGAY--REAVSNFLTALSL---QRKSRNQQQVPHPAISGNIWAALRIA 336 (365)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHH---HHCC------------CHHHHHHHHH
T ss_pred ----------------CCchHHHHHHHHHHHHCCCH--HHHHHHHHHHHHh---CcccCCCcccchhhhHHHHHHHHHHH
Confidence 12467899999999999999 9999999998864 333 6789999999
Q ss_pred HHhhCCHHHHHHHHHh
Q 035847 361 LARAGQFDDTLNFMKK 376 (523)
Q Consensus 361 ~~~~g~~~~A~~~~~~ 376 (523)
+...|+.+.+..+.++
T Consensus 337 ~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 337 LSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHTCHHHHHHHHTT
T ss_pred HHHcCcHHHHHHHHHh
Confidence 9999999999988776
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=136.89 Aligned_cols=292 Identities=14% Similarity=0.173 Sum_probs=106.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----HHHHhhccC
Q 035847 34 KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----VYKACSELK 109 (523)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----ll~~~~~~~ 109 (523)
+.|+++.|.++++.+ +.| .+|..|..++.+.|++++|++.|.+..... ++.++...|
T Consensus 15 ~~~~ld~A~~fae~~-----------------~~~--~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----------------NEP--AVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----------------CCh--HHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Confidence 456677777776654 234 499999999999999999999998764433 899999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHH
Q 035847 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNS 189 (523)
Q Consensus 110 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~ 189 (523)
++++|...+....+. .+++.+.+.|+.+|.|.|+++++.++++. |+..+|+.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--------------------------pn~~a~~~ 127 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING--------------------------PNNAHIQQ 127 (449)
T ss_dssp -----------------------------------CHHHHTTTTTC--------------------------C-------
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--------------------------CcHHHHHH
Confidence 999999988877764 56789999999999999999999888765 34446666
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHH
Q 035847 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269 (523)
Q Consensus 190 li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 269 (523)
+.+.|...|++++|...|+.+ ..|..|.. .+.+.|++++|++.++.+ .++.||..++
T Consensus 128 IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~------------~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~ 184 (449)
T 1b89_A 128 VGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS------------TLVHLGEYQAAVDGARKA------NSTRTWKEVC 184 (449)
T ss_dssp ---------CTTTHHHHHHHT-----TCHHHHHH------------HHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH------------HHHHhccHHHHHHHHHHc------CCchhHHHHH
Confidence 667777777777777777655 35666666 666666677777766666 2566666666
Q ss_pred HHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh-----------------CC-CCCcchHHHHHHHHHhcCCCch
Q 035847 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ-----------------GL-GTGSFVWNSLIDMYGRCGAIQK 331 (523)
Q Consensus 270 ~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y-----------------~~-~p~~~~~n~li~~~~~~g~~~~ 331 (523)
.+|...|+++.|......+ ...|+. ...++..| ++ ......|+-|--+|++.. +
T Consensus 185 ~aCv~~~ef~lA~~~~l~L---~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~-p-- 256 (449)
T 1b89_A 185 FACVDGKEFRLAQMCGLHI---VVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-P-- 256 (449)
T ss_dssp HHHHHTTCHHHHHHTTTTT---TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-H--
T ss_pred HHHHHcCcHHHHHHHHHHH---HhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-H--
Confidence 7777766666664332211 111111 11222222 23 334456666666666553 2
Q ss_pred HHHHHHHHHhHHhcCCcc------CHhHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCC----------CCCCHHHHHHH
Q 035847 332 NEGWRYFEMMKKEYNMEP------AMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHA 395 (523)
Q Consensus 332 ~~a~~~~~~m~~~~g~~p------~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~~~----------~~~~~~~~~~~ 395 (523)
++.++.++.-.+.-++.| +...|.-++-.|...++++.|...+-+-+ |+.. +-.|.++--++
T Consensus 257 ~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYka 334 (449)
T 1b89_A 257 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRA 334 (449)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHH
Confidence 333333333333335555 35678888888888888888887665542 2211 45666666666
Q ss_pred HHHHHhhCCC
Q 035847 396 ARHLFELEPL 405 (523)
Q Consensus 396 ~~~l~~~~~~ 405 (523)
..--++..|.
T Consensus 335 i~fyl~~~p~ 344 (449)
T 1b89_A 335 IQFYLEFKPL 344 (449)
T ss_dssp HHHHHHHCGG
T ss_pred HHHHHhcCHH
Confidence 5555544443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=127.27 Aligned_cols=261 Identities=8% Similarity=-0.090 Sum_probs=200.5
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccH
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gl 101 (523)
...+..+...+...|+++.|..+++.+.+.. ..+..+|..+...+.+.|++++|+..|++..+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 85 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA--------------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD- 85 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 3445566666777888888888888877654 2356777777788888888888888887766532
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC
Q 035847 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 181 (523)
+.+..++..+...|.+.|++++|...|++ ... -..
T Consensus 86 -------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~-------------------~~~-~~~ 120 (327)
T 3cv0_A 86 -------------------------PKDIAVHAALAVSHTNEHNANAALASLRA-------------------WLL-SQP 120 (327)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-TST
T ss_pred -------------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHH-hCC
Confidence 44677888999999999999999999998 221 011
Q ss_pred CchhHHHHH--------------HH-HHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCc
Q 035847 182 SDLLVNNSL--------------MD-FYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDG 243 (523)
Q Consensus 182 ~d~~~~~~l--------------i~-~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~ 243 (523)
.+...+..+ .. .+.+.|++++|...++...+ .+...|..+.. .|.+.|++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~------------~~~~~~~~ 188 (327)
T 3cv0_A 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV------------LYNLSNNY 188 (327)
T ss_dssp TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH------------HHHHTTCH
T ss_pred ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH------------HHHHhccH
Confidence 112222222 22 37778999999999988753 36678888888 88999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHH
Q 035847 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323 (523)
Q Consensus 244 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~ 323 (523)
++|++.|++..+.. +.+..++..+...+...|+.++|.+.+..+.+.. +.+..+|..+...|
T Consensus 189 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 189 DSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-----------------PGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------CCCHHHHHHHHHHH
Confidence 99999999998753 2357788899999999999999999999988743 22456788999999
Q ss_pred HhcCCCchHHHHHHHHHhHHhcCCccC-------------HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 324 GRCGAIQKNEGWRYFEMMKKEYNMEPA-------------MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 324 ~~~g~~~~~~a~~~~~~m~~~~g~~p~-------------~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
...|+. ++|..+|+...+. .|+ ...|..+..++.+.|+.++|..++++.
T Consensus 251 ~~~g~~--~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 251 SNMSQY--DLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHTTCH--HHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHhccH--HHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999 9999999998765 344 678999999999999999999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=128.11 Aligned_cols=222 Identities=10% Similarity=-0.042 Sum_probs=179.2
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
....+.+.|+++.|.+.++.+++.. +.+..+|..+...|.+.|++++|...|++ ... -.
T Consensus 71 ~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------al~-~~ 129 (365)
T 4eqf_A 71 EGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQR-------------------CLE-LQ 129 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------HHh-cC
Confidence 4556778899999999999999874 45788999999999999999999999999 222 12
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-----------hhhHHHHHHhhhhcCCccccchhhccCCchHHH
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH-----------LVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~-----------~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~ 247 (523)
+.+..++..+...|.+.|++++|...|+++.+ |+ ...++.+.. .+.+.|++++|+
T Consensus 130 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~------------~~~~~g~~~~A~ 197 (365)
T 4eqf_A 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK------------SPVDSSVLEGVK 197 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------------CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH------------HHhhhhhHHHHH
Confidence 33578899999999999999999999998753 22 122333455 888999999999
Q ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhc
Q 035847 248 EFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326 (523)
Q Consensus 248 ~lf~~M~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~ 326 (523)
+.|+++.+.... ++..++..+...+...|++++|.+.++.+.+.. +.+..+|+.+...|...
T Consensus 198 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~l~~~~~~~ 260 (365)
T 4eqf_A 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-----------------PEDYSLWNRLGATLANG 260 (365)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHc
Confidence 999999885422 257889999999999999999999999998743 23567899999999999
Q ss_pred CCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 327 GAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 327 g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
|+. ++|...|+...+. .|+ ..+|..+...|.+.|++++|...+++.
T Consensus 261 g~~--~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 261 DRS--EEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp TCH--HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999 9999999999875 455 788999999999999999999998875
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-12 Score=132.71 Aligned_cols=340 Identities=11% Similarity=0.058 Sum_probs=232.1
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc--
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-- 100 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-- 100 (523)
..|..+-..+.+.|+++.|...+..+.+.. ..+..+|..+...|.+.|++++|++.|++....+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 91 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD--------------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 456677778888999999999999998865 2477889999999999999999999999887654
Q ss_pred -------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCc----hhhHhh
Q 035847 101 -------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL----LKHGKE 169 (523)
Q Consensus 101 -------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~----~~~~~~ 169 (523)
+...+...|+.++|.+.+. ... ..|+ ..+..+..+...+....|...++++.-...+. ......
T Consensus 92 ~~~~~~~la~~~~~~g~~~~A~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 166 (537)
T 3fp2_A 92 HSKALLRRASANESLGNFTDAMFDLS-VLS--LNGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS 166 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHH-HHh--cCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH
Confidence 5566677788888888775 221 2232 22334556666666777777777721100000 000000
Q ss_pred Hh------------hhhhhcCCCCCc-hhHHHHHHHHHHhc--------CChHHHHHHHhcCCC--CC-hhhHHHHHHhh
Q 035847 170 IH------------PHHLKKDDLESD-LLVNNSLMDFYAKC--------RYLKVAHCKFSKIKQ--KH-LVSWNAMLAGY 225 (523)
Q Consensus 170 ~~------------~~~~~~~g~~~d-~~~~~~li~~~~k~--------g~~~~A~~vf~~m~~--~~-~~t~~~li~~~ 225 (523)
+. ....+.....+. ......+...+... |++++|..+|+.+.+ |+ ...+..+..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 246 (537)
T 3fp2_A 167 LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALAL 246 (537)
T ss_dssp HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHH
Confidence 00 000000011111 11333333333222 478899999988764 43 22333333222
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
...|. .+...|++++|+..|++..+. .|+..++..+...+...|+++.|.+.+..+.+..
T Consensus 247 ~~~g~-----~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------- 306 (537)
T 3fp2_A 247 CYTGI-----FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN------------- 306 (537)
T ss_dssp HHHHH-----HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-------------
T ss_pred HHHHH-----HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-------------
Confidence 22222 788899999999999999885 5668888889999999999999999999998743
Q ss_pred hhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCC
Q 035847 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSS 383 (523)
Q Consensus 306 ~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 383 (523)
+.+..+|..+...|...|+. ++|...|+...+. .|+ ...|..+...+.+.|++++|.+++++. ...|+.
T Consensus 307 ----~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 377 (537)
T 3fp2_A 307 ----PEYPPTYYHRGQMYFILQDY--KNAKEDFQKAQSL---NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377 (537)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ----CCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 22456789999999999999 9999999999875 343 678999999999999999999999885 345555
Q ss_pred C-----------CCCCHHHHHHHHHHHHhhCCCCCcce
Q 035847 384 A-----------EPCNPDIAEHAARHLFELEPLSSGKV 410 (523)
Q Consensus 384 ~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~ 410 (523)
. ..|+.+.|...+++.++..|.+...+
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 5 78999999999999999988766543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.3e-13 Score=131.44 Aligned_cols=252 Identities=10% Similarity=0.070 Sum_probs=117.8
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|.++++++. +..+|+.|..++.+.|++++|...|.. .+|..+|..++.++.+
T Consensus 19 ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik-------------------a~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 19 LDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK-------------------ADDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc-------------------CCCHHHHHHHHHHHHh
Confidence 577888888872 335899999999999999999988742 3477799999999999
Q ss_pred cCCchHHHHHHHHhhHcc--------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhh
Q 035847 83 LGYYEEIVNLFYLLIDEG--------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g--------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~ 154 (523)
.|++++|+..++..++.. ++.++.+.|++.++.+++. .|+..+|+.+.+.|...|.+++|...|.
T Consensus 74 ~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 74 SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999777665432 7779999999999998885 4788899999999999999999999999
Q ss_pred hccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCcccc
Q 035847 155 EKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234 (523)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i 234 (523)
+ + ..|..|.+.+.+.|++++|.+.+..+. ++.+|..++.
T Consensus 147 ~-------------------a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~----------- 185 (449)
T 1b89_A 147 N-------------------V---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCF----------- 185 (449)
T ss_dssp H-------------------T---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHH-----------
T ss_pred H-------------------h---------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHH-----------
Confidence 8 3 368999999999999999999999883 7889999999
Q ss_pred chhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh-------
Q 035847 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ------- 307 (523)
Q Consensus 235 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y------- 307 (523)
+|+..|+++.|......+. +.|+. ...++..|.+.|.++++..+++...... .-....++-|--.|
T Consensus 186 -aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k 258 (449)
T 1b89_A 186 -ACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQK 258 (449)
T ss_dssp -HHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHH
T ss_pred -HHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHH
Confidence 8888888888865554322 34444 4467788888888888888887776433 23344444443333
Q ss_pred ------------CCCC------CcchHHHHHHHHHhcCCCchHHHHH
Q 035847 308 ------------GLGT------GSFVWNSLIDMYGRCGAIQKNEGWR 336 (523)
Q Consensus 308 ------------~~~p------~~~~~n~li~~~~~~g~~~~~~a~~ 336 (523)
+++| +...|.-+.-.|...+++ +.|..
T Consensus 259 ~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~--d~A~~ 303 (449)
T 1b89_A 259 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY--DNAII 303 (449)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH--HHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH--HHHHH
Confidence 2233 688899999999999999 88766
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-12 Score=121.66 Aligned_cols=239 Identities=8% Similarity=-0.010 Sum_probs=197.8
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
.+++|+.+|+++.+.. +.+..++..+..++...|+++.|...++.+.+.. ..+..+|..+...|.
T Consensus 36 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------------PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------cCCHHHHHHHHHHHH
Confidence 4689999999988753 2366788888889999999999999999998864 346788999999999
Q ss_pred hcCCchHHHHHHHHhhHcc--------HH--------------HH--hhccCChHHHHHHHHHHHHhcCCCCceeHhHHH
Q 035847 82 VLGYYEEIVNLFYLLIDEG--------VY--------------KA--CSELKDHRVGKDVYDYMISIKFEGNACVKRPVL 137 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g--------ll--------------~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 137 (523)
..|++++|++.|++..... .+ .. +...|+++.|.+.+..+.+.. +.+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 9999999999999987654 11 22 777889999999999998874 44678899999
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CC
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KH 214 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~ 214 (523)
..|.+.|++++|...|++ ... -...+..++..+...|.+.|+.++|...|++..+ .+
T Consensus 180 ~~~~~~~~~~~A~~~~~~-------------------~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRR-------------------AVE-LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239 (327)
T ss_dssp HHHHHTTCHHHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhccHHHHHHHHHH-------------------HHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999998 322 1234577899999999999999999999998643 35
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHhhccCChhHHHH
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-----------NTISLSGVLAACAQVKGFKLGKE 283 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-----------~~~t~~~ll~a~~~~g~~~~a~~ 283 (523)
..+|..+.. .|.+.|++++|.+.|++.......+ +..++..+..++.+.|+.+.|..
T Consensus 240 ~~~~~~l~~------------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 240 VRVMYNMAV------------SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHH------------HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 678888888 8899999999999999988743221 46788899999999999999999
Q ss_pred HHHHH
Q 035847 284 IHGYV 288 (523)
Q Consensus 284 i~~~~ 288 (523)
++...
T Consensus 308 ~~~~~ 312 (327)
T 3cv0_A 308 TYAQN 312 (327)
T ss_dssp HTTCC
T ss_pred HHHHH
Confidence 87654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.42 E-value=8.1e-12 Score=123.53 Aligned_cols=239 Identities=10% Similarity=0.019 Sum_probs=183.4
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|+..|+++.+.. +.+..++..+..++...|+++.|...+..+.+.. ..+..+|..+...|..
T Consensus 80 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 80 LPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--------------PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHH
Confidence 567777777777653 2355567777777777888888888877777654 2367788888888888
Q ss_pred cCCchHHHHHHHHhhHcc---------H---------------HHHhhccCChHHHHHHHHHHHHhcCCC-CceeHhHHH
Q 035847 83 LGYYEEIVNLFYLLIDEG---------V---------------YKACSELKDHRVGKDVYDYMISIKFEG-NACVKRPVL 137 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------l---------------l~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li 137 (523)
.|++++|++.|+++.... . +..+...|+++.|.+.+..+.+..-.. +..++..+.
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 888888888888876543 1 344447788888888888888764211 467888888
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CC
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KH 214 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~ 214 (523)
..|.+.|++++|...|++ ... -.+.+..+++.+...|.+.|++++|...|+...+ .+
T Consensus 225 ~~~~~~g~~~~A~~~~~~-------------------al~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 284 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTA-------------------ALS-VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284 (368)
T ss_dssp HHHHHTTCHHHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHcCCHHHHHHHHHH-------------------HHH-hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999888 222 1233577899999999999999999999998653 35
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC----------CHHHHHHHHHHhhccCChhHHHHH
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP----------NTISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p----------~~~t~~~ll~a~~~~g~~~~a~~i 284 (523)
..+|..+.. .|.+.|++++|...|++..+..... ...+|..+..++...|+.+.|..+
T Consensus 285 ~~~~~~l~~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 285 IRSRYNLGI------------SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 678888888 8899999999999999987632111 267899999999999999999998
Q ss_pred HHHH
Q 035847 285 HGYV 288 (523)
Q Consensus 285 ~~~~ 288 (523)
+...
T Consensus 353 ~~~~ 356 (368)
T 1fch_A 353 DARD 356 (368)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 7643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-11 Score=116.49 Aligned_cols=246 Identities=11% Similarity=0.036 Sum_probs=184.5
Q ss_pred HHHHHhcCCchHHHHHHHHhhHcc----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~g----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
|+-....|++..|+..++...... +.+++...|+.+.|...++. .-.|+..++..+...|...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344556688888888776653322 66778888888888765543 1356777888889999999999
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhh
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~ 225 (523)
++|.+.+++ +-..+..|+ ..++..+-..|.+.|++++|.+.|+. ..+...+..+..
T Consensus 82 ~~A~~~l~~-------------------ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~-- 138 (291)
T 3mkr_A 82 DAIVAELDR-------------------EMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQ-- 138 (291)
T ss_dssp HHHHHHHHH-------------------HHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHH--
T ss_pred HHHHHHHHH-------------------HHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHH--
Confidence 999999998 543255564 55666677889999999999999998 456778888888
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHH---HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhH
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL---SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~ 302 (523)
.|.+.|++++|.+.|+++.+.. |+...+ ...+..+...|+.++|..+++.+.+..
T Consensus 139 ----------~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---------- 196 (291)
T 3mkr_A 139 ----------ILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---------- 196 (291)
T ss_dssp ----------HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----------
T ss_pred ----------HHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC----------
Confidence 8889999999999999998864 664322 122333445689999999999998752
Q ss_pred HHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc-CHhHHHHHHHHHHhhCCHHH-HHHHHHhC-CC
Q 035847 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP-AMEQYCCMVDLLARAGQFDD-TLNFMKKM-PF 379 (523)
Q Consensus 303 li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~-A~~~~~~m-~~ 379 (523)
+.+...|+.+..+|.+.|++ ++|...|++..+. .| +..++..++..+...|+.++ +.+++++. ..
T Consensus 197 -------p~~~~~~~~la~~~~~~g~~--~eA~~~l~~al~~---~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 197 -------SPTLLLLNGQAACHMAQGRW--EAAEGVLQEALDK---DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -------CCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -------CCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 23567889999999999999 9999999998765 45 46788889999999999876 56677653 24
Q ss_pred CCCC
Q 035847 380 EPSS 383 (523)
Q Consensus 380 ~p~~ 383 (523)
.|+.
T Consensus 265 ~P~~ 268 (291)
T 3mkr_A 265 HRSH 268 (291)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 4443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-11 Score=115.15 Aligned_cols=264 Identities=11% Similarity=0.066 Sum_probs=197.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC--cchHHHHHHHHHhcCCchHHHHHHHHhhHcc------HHHHh
Q 035847 34 KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN--VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------VYKAC 105 (523)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ll~~~ 105 (523)
..|++..|....+..... .|+ ....-.+..+|...|++++|+..++...... +...+
T Consensus 11 ~~g~y~~ai~~~~~~~~~---------------~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS---------------SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYL 75 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC---------------SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccC---------------CchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHH
Confidence 467777777765543221 222 3455667889999999999998775431111 66777
Q ss_pred hccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch
Q 035847 106 SELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184 (523)
Q Consensus 106 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~ 184 (523)
...++.+.|.+.++.+...+..|+ ...+..+-..|.+.|++++|...|++ ..+.
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------------------~~~~ 130 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------------------GDSL 130 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------------------CCSH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------------------CCCH
Confidence 888999999999999998876665 45566666999999999999999876 3567
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
..+..+...|.+.|+.++|.+.|+.+.+ |+.. ...+..++.. .+...|++++|+.+|+++.+. .+.+.
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~l~~a~~~--------l~~~~~~~~eA~~~~~~~l~~-~p~~~ 200 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-LTQLATAWVS--------LAAGGEKLQDAYYIFQEMADK-CSPTL 200 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHH--------HHHCTTHHHHHHHHHHHHHHH-SCCCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-HHHHHHHHHH--------HHhCchHHHHHHHHHHHHHHh-CCCcH
Confidence 7899999999999999999999999863 5543 2223332211 344568999999999999987 44578
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHH-HHHHHHHh
Q 035847 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE-GWRYFEMM 341 (523)
Q Consensus 263 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~-a~~~~~~m 341 (523)
..++.+..++.+.|++++|.+.++.+++.. +-|..+|+.++..+...|+. ++ +.++++++
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~-----------------p~~~~~l~~l~~~~~~~g~~--~eaa~~~~~~~ 261 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKD-----------------SGHPETLINLVVLSQHLGKP--PEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHH
Confidence 889999999999999999999999988743 22556899999999999998 76 57899988
Q ss_pred HHhcCCccCHhHHHHHHHHHHhhCCHHHHHH
Q 035847 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372 (523)
Q Consensus 342 ~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 372 (523)
.+. .|+... +.+...+.+.++++..
T Consensus 262 ~~~---~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 262 KDA---HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HHH---CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred HHh---CCCChH---HHHHHHHHHHHHHHHH
Confidence 765 566432 3345556666666654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-08 Score=102.30 Aligned_cols=317 Identities=13% Similarity=0.024 Sum_probs=180.7
Q ss_pred hHHHHHHHHhhhCCCCCCcchHHHHHHhccC----CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHH
Q 035847 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPK----LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGM 79 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~ 79 (523)
++|+..|++-.+.| +...+..|-..+.. .++.++|...+......| +...+..|-..
T Consensus 60 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------------~~~a~~~Lg~~ 120 (490)
T 2xm6_A 60 TQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----------------LPQAQQNLGVM 120 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------CHHHHHHHHHH
Confidence 44555555544432 22333333333333 455555555555554433 33444455555
Q ss_pred HHh----cCCchHHHHHHHHhhHcc-------HHHHhhc----cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHh--
Q 035847 80 YNV----LGYYEEIVNLFYLLIDEG-------VYKACSE----LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK-- 142 (523)
Q Consensus 80 ~~~----~g~~~~A~~l~~~m~~~g-------ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-- 142 (523)
|.. .+++++|+..|++..+.| +-..+.. .++.+.|.+.+....+.| +...+..|-.+|.+
T Consensus 121 y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 121 YHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGL 197 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCC
Confidence 555 556666666666655554 2222222 456666666666665543 44555555556655
Q ss_pred --cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CCh
Q 035847 143 --CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK----CRYLKVAHCKFSKIKQ-KHL 215 (523)
Q Consensus 143 --~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k----~g~~~~A~~vf~~m~~-~~~ 215 (523)
.++.++|...|++ ..+. | +...+..|-.+|.. .++.++|...|+...+ .+.
T Consensus 198 g~~~~~~~A~~~~~~------------------a~~~-~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 255 (490)
T 2xm6_A 198 GVERNDAISAQWYRK------------------SATS-G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS 255 (490)
T ss_dssp SSCCCHHHHHHHHHH------------------HHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH
T ss_pred CCCcCHHHHHHHHHH------------------HHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 5666666666665 2333 2 34566667777776 6788888888876543 344
Q ss_pred hhHHHHHHhhhhcCCccccchhhc----cCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc-----CChhHHHHHHH
Q 035847 216 VSWNAMLAGYALGGFREEITGFTQ----YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV-----KGFKLGKEIHG 286 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~~----~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~i~~ 286 (523)
.++..+-. .|.. .+++++|++.|+...+.| +...+..+-..+... ++.++|...+.
T Consensus 256 ~a~~~lg~------------~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 256 IAQFRLGY------------ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHHHHH------------HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHHHH------------HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 55555555 4444 677888888888877654 334444455555554 77888888888
Q ss_pred HHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcC---CCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh
Q 035847 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG---AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363 (523)
Q Consensus 287 ~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g---~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 363 (523)
...+.| +...+..+-..|...| +. ++|.++|+...+. | +...+..|-..|..
T Consensus 321 ~a~~~~-------------------~~~a~~~lg~~y~~~g~~~~~--~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 321 KSAEQG-------------------DATAQANLGAIYFRLGSEEEH--KKAVEWFRKAAAK-G---EKAAQFNLGNALLQ 375 (490)
T ss_dssp HHHHTT-------------------CHHHHHHHHHHHHHSCCHHHH--HHHHHHHHHHHHT-T---CHHHHHHHHHHHHH
T ss_pred HHHhcC-------------------CHHHHHHHHHHHHhCCCcccH--HHHHHHHHHHHHC-C---CHHHHHHHHHHHHc
Confidence 777754 2234445555555544 45 6777777766653 2 45566666666666
Q ss_pred ----hCCHHHHHHHHHhCCCCCCCC--------------CCCCHHHHHHHHHHHHhhCC
Q 035847 364 ----AGQFDDTLNFMKKMPFEPSSA--------------EPCNPDIAEHAARHLFELEP 404 (523)
Q Consensus 364 ----~g~~~~A~~~~~~m~~~p~~~--------------~~~~~~~~~~~~~~l~~~~~ 404 (523)
.+++++|.+++++.--..+.. ..+|.+.|...+++..+..|
T Consensus 376 g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 376 GKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 677777777766531111111 25677777777777777664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-09 Score=101.39 Aligned_cols=197 Identities=10% Similarity=0.009 Sum_probs=146.5
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
...|..+...|...|++++|++.|++..... +.+..++..+...|.+.|++++|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~la~~~~~~~~~~~A 90 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--------------------------PSSADAHAALAVVFQTEMEPKLA 90 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------------------CChHHHHHHHHHHHHHcCCHHHH
Confidence 4667777778888888888888887766532 44667888888899999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----C-ChhhHHHHHHh
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ----K-HLVSWNAMLAG 224 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~----~-~~~t~~~li~~ 224 (523)
...|++ ... -...+..++..+...|.+.|++++|.+.|+...+ | +...|..+..
T Consensus 91 ~~~~~~-------------------a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~- 149 (252)
T 2ho1_A 91 DEEYRK-------------------ALA-SDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL- 149 (252)
T ss_dssp HHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH-
T ss_pred HHHHHH-------------------HHH-HCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH-
Confidence 999988 222 1223567788888888889999999988887654 3 3356777777
Q ss_pred hhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHH
Q 035847 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304 (523)
Q Consensus 225 ~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li 304 (523)
.|.+.|++++|.+.|++..+.. +.+..++..+...+...|+.++|...++.+.+..
T Consensus 150 -----------~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------ 205 (252)
T 2ho1_A 150 -----------VSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG------------ 205 (252)
T ss_dssp -----------HHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS------------
T ss_pred -----------HHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 7788888999999888887753 2246677777788888888888888887776532
Q ss_pred hhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 305 ~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
+.+...|..+...|...|+. ++|.++++.+.+.
T Consensus 206 -----~~~~~~~~~~~~~~~~~g~~--~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 206 -----GQNARSLLLGIRLAKVFEDR--DTAASYGLQLKRL 238 (252)
T ss_dssp -----CCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred -----cCcHHHHHHHHHHHHHccCH--HHHHHHHHHHHHH
Confidence 22445677777788888888 8888888888765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-09 Score=99.80 Aligned_cols=198 Identities=8% Similarity=-0.081 Sum_probs=120.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+..+|..+...+.+.|++++|+..|++..... +.+..++..+...|...|++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~ 60 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--------------------------PKNELAWLVRAEIYQYLKVNDK 60 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------------------------ccchHHHHHHHHHHHHcCChHH
Confidence 44566666777777777777777776655432 3345566777777777777777
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhc-CChHHHHHHHhcCCC----CC-hhhHHHHH
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC-RYLKVAHCKFSKIKQ----KH-LVSWNAML 222 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~-g~~~~A~~vf~~m~~----~~-~~t~~~li 222 (523)
|...|++ ... -...+..++..+...|... |++++|...|+.+.+ |+ ...|..+.
T Consensus 61 A~~~~~~-------------------a~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 120 (225)
T 2vq2_A 61 AQESFRQ-------------------ALS-IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG 120 (225)
T ss_dssp HHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHH
T ss_pred HHHHHHH-------------------HHH-hCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHH
Confidence 7777776 221 1122455666667777777 777777777766543 21 34555565
Q ss_pred HhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhH
Q 035847 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302 (523)
Q Consensus 223 ~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~ 302 (523)
. .+.+.|++++|++.|+++.+.. +.+...+..+...+...|+.++|.+.++.+.+..-.
T Consensus 121 ~------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------- 179 (225)
T 2vq2_A 121 I------------CSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV-------- 179 (225)
T ss_dssp H------------HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--------
T ss_pred H------------HHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Confidence 6 6666777777777777666532 123555666666666666666666666666553210
Q ss_pred HHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 303 li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
.+...|..+...+...|+. +++..+++.+.+
T Consensus 180 --------~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~ 210 (225)
T 2vq2_A 180 --------LQADDLLLGWKIAKALGNA--QAAYEYEAQLQA 210 (225)
T ss_dssp --------CCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHhcCcH--HHHHHHHHHHHH
Confidence 1334455555666666666 666666666654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.6e-09 Score=108.99 Aligned_cols=355 Identities=10% Similarity=0.096 Sum_probs=228.7
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
|..+|..++.. .+.|+++.|..+++.+.+.- ..+...|..++..+.+.|++++|..+|++.....
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--------------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~ 76 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF--------------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 76 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 56688888884 67899999999999988753 2366789999999999999999999999987653
Q ss_pred ----HHHHh-----hccCChHHHHH----HHHHHHHh-cCCC-CceeHhHHHHHHHh---------cCCHHHHHHHhhhc
Q 035847 101 ----VYKAC-----SELKDHRVGKD----VYDYMISI-KFEG-NACVKRPVLDMFIK---------CGRMEMASGEFEEK 156 (523)
Q Consensus 101 ----ll~~~-----~~~~~~~~a~~----~~~~m~~~-g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~f~~~ 156 (523)
+-..+ ...|+.+.|++ +|+..+.. |..| +...|...+....+ .|+++.|..+|+++
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 11111 23566666655 77766543 5554 45677777777655 78899999999994
Q ss_pred cccccC-c------------------------------hhhHhhHhhh------hhhcC--CCCCc--------hhHHHH
Q 035847 157 DFSNLS-L------------------------------LKHGKEIHPH------HLKKD--DLESD--------LLVNNS 189 (523)
Q Consensus 157 ~~~~~~-~------------------------------~~~~~~~~~~------~~~~~--g~~~d--------~~~~~~ 189 (523)
.. .+. . +..+..++.. .++.. .+.|+ ...|..
T Consensus 157 l~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 157 CV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp TT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred Hh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 32 211 1 1111111111 11110 02333 245555
Q ss_pred HHHHHHhc----CCh----HHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhc-------cCCch-------
Q 035847 190 LMDFYAKC----RYL----KVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQ-------YGDGE------- 244 (523)
Q Consensus 190 li~~~~k~----g~~----~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~-------~g~~~------- 244 (523)
.+...-.. ++. ..|..+|++..+ | +...|..+.. .+.+ .|+++
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~------------~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQ------------YLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH------------HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHH------------HHHHhchhhhhccchhhhhhhhH
Confidence 55443322 222 255566666543 3 4567777776 5554 68887
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCC-cchHHHHHHH
Q 035847 245 TALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG-SFVWNSLIDM 322 (523)
Q Consensus 245 ~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~-~~~~n~li~~ 322 (523)
+|..+|++..+. +.| +...|..+...+.+.|+++.|.++++.+++. .|+ + ...|......
T Consensus 304 ~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~---------------~~~~~~~~~~~~ 365 (530)
T 2ooe_A 304 EAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDI---------------DPTLVYIQYMKF 365 (530)
T ss_dssp HHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSS---------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--ccc---------------CchHHHHHHHHH
Confidence 899999998752 345 4677888888899999999999999999873 221 1 1367778888
Q ss_pred HHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHH-HHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCC
Q 035847 323 YGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDL-LARAGQFDDTLNFMKKM-PFEPSSA-----------EPCN 388 (523)
Q Consensus 323 ~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~-~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~ 388 (523)
+.+.|+. ++|..+|+...+. .|+ ...|...... +...|+.++|..++++. ...|+.. ..|+
T Consensus 366 ~~~~~~~--~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 366 ARRAEGI--KSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE 440 (530)
T ss_dssp HHHHHHH--HHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC
T ss_pred HHHhcCH--HHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC
Confidence 8888888 8888888887653 333 2333222222 33578888888888763 3445543 6788
Q ss_pred HHHHHHHHHHHHhhCCCCCc----ceeEEEecCCCCchHHHH
Q 035847 389 PDIAEHAARHLFELEPLSSG----KVHSFIAGDTSHSLVHKI 426 (523)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 426 (523)
.+.|+..+++.+...|.++. .|..++.-...+|..+.+
T Consensus 441 ~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888877665543 343333333445555554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=109.69 Aligned_cols=254 Identities=10% Similarity=-0.067 Sum_probs=182.0
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCC
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~ 110 (523)
.....++++.|...+..+.+.....+ ..+..+|..+...|...|++++|+..|++.....
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------- 73 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTD----------DERAQLLYERGVLYDSLGLRALARNDFSQALAIR---------- 73 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred ccCccchHHHHHHHHHHHHhcccccC----------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----------
Confidence 34456789999999999887532100 1256788889999999999999999998877643
Q ss_pred hHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHH
Q 035847 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSL 190 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~l 190 (523)
+.+..+|..+...|.+.|++++|...|++ ... -.+.+..++..+
T Consensus 74 ----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~-------------------al~-~~~~~~~~~~~l 117 (275)
T 1xnf_A 74 ----------------PDMPEVFNYLGIYLTQAGNFDAAYEAFDS-------------------VLE-LDPTYNYAHLNR 117 (275)
T ss_dssp ----------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HCTTCTHHHHHH
T ss_pred ----------------CCcHHHHHHHHHHHHHccCHHHHHHHHHH-------------------HHh-cCccccHHHHHH
Confidence 44678889999999999999999999998 222 122357788999
Q ss_pred HHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHH
Q 035847 191 MDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268 (523)
Q Consensus 191 i~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 268 (523)
...|.+.|++++|...|+.+. .|+...+...+. .+...|++++|+..|++..... .++...+. +
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~ 183 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY------------LAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-I 183 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH------------HHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-H
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH------------HHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-H
Confidence 999999999999999998875 355555555555 5556789999999998877652 34444444 6
Q ss_pred HHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCc
Q 035847 269 LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348 (523)
Q Consensus 269 l~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~ 348 (523)
...+...++.+.|.+.+....+...... ..+..+|..+...|...|+. ++|..+|+...+. .
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~---~ 245 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSLA-------------EHLSETNFYLGKYYLSLGDL--DSATALFKLAVAN---N 245 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHHH-------------HHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTT---C
T ss_pred HHHHHHhcCHHHHHHHHHHHhccccccc-------------ccccHHHHHHHHHHHHcCCH--HHHHHHHHHHHhC---C
Confidence 6667777778888887776654211100 01246788899999999999 9999999998753 5
Q ss_pred cCHhHHHHHHHHHHhhCCHHHHHHHH
Q 035847 349 PAMEQYCCMVDLLARAGQFDDTLNFM 374 (523)
Q Consensus 349 p~~~ty~~li~~~~~~g~~~~A~~~~ 374 (523)
|+. +.....++...|++++|.+-+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 643 223355677888888887664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-09 Score=101.00 Aligned_cols=195 Identities=12% Similarity=0.027 Sum_probs=160.1
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
...+..+...|...|++++|...|++ ... ....+..++..+...|.+.|++++|...|++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~-------------------al~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 96 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRK-------------------ALE-IDPSSADAHAALAVVFQTEMEPKLADEEYRK 96 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH-------------------HHh-cCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677888889999999999999988 322 1234577889999999999999999999987
Q ss_pred CCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHH
Q 035847 210 IKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 210 m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~ 285 (523)
..+ .+...|..+.. .|.+.|++++|+++|+++...+..| +...+..+...+...|++++|.+.+
T Consensus 97 a~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 97 ALASDSRNARVLNNYGG------------FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp HHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCcCcHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 643 36678888888 8889999999999999998744556 4567778888899999999999999
Q ss_pred HHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhC
Q 035847 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365 (523)
Q Consensus 286 ~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g 365 (523)
..+.+.. +.+...|..+...|...|+. ++|..+|+...+. ...+...+..+...+.+.|
T Consensus 165 ~~~~~~~-----------------~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g 223 (252)
T 2ho1_A 165 EKSLRLN-----------------RNQPSVALEMADLLYKEREY--VPARQYYDLFAQG--GGQNARSLLLGIRLAKVFE 223 (252)
T ss_dssp HHHHHHC-----------------SCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhcC-----------------cccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcc
Confidence 9988753 12456788899999999999 9999999998753 2345678888889999999
Q ss_pred CHHHHHHHHHhC
Q 035847 366 QFDDTLNFMKKM 377 (523)
Q Consensus 366 ~~~~A~~~~~~m 377 (523)
+.++|.++++++
T Consensus 224 ~~~~A~~~~~~~ 235 (252)
T 2ho1_A 224 DRDTAASYGLQL 235 (252)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999988875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.8e-10 Score=106.38 Aligned_cols=215 Identities=7% Similarity=-0.049 Sum_probs=156.8
Q ss_pred hhHHHHHHHHhhhCCCC--C-CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHH
Q 035847 3 IKNVTLLLQSMDLTNPD--E-CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGM 79 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~ 79 (523)
+++|+..|+++.+.... | +..++..+...+...|+++.|...+....+.. ..+..+|..+...
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~la~~ 86 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--------------PDMPEVFNYLGIY 86 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--------------CCcHHHHHHHHHH
Confidence 67899999999886421 1 45678888889999999999999999998875 2467899999999
Q ss_pred HHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhcccc
Q 035847 80 YNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159 (523)
Q Consensus 80 ~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 159 (523)
|.+.|++++|++.|++..... +.+..++..+...|.+.|++++|...|++
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~---- 136 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELD--------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLA---- 136 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHccCHHHHHHHHHHHHhcC--------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHH----
Confidence 999999999999999877643 34567788888888888888888888887
Q ss_pred ccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHhhhhcCCccccch
Q 035847 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK---QKHLVSWNAMLAGYALGGFREEITG 236 (523)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~---~~~~~t~~~li~~~~~~g~~~~i~~ 236 (523)
... ..|+.......+..+.+.|+.++|...|+... .++...|+ +.. .
T Consensus 137 ---------------a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~------------~ 186 (275)
T 1xnf_A 137 ---------------FYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVE------------F 186 (275)
T ss_dssp ---------------HHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHH------------H
T ss_pred ---------------HHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHH------------H
Confidence 222 23444444445555566788888888886543 23334444 455 5
Q ss_pred hhccCCchHHHHHHHHHHhcCCC--C-CHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 237 FTQYGDGETALEFFSRMIQTDMQ--P-NTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 237 ~~~~g~~~~A~~lf~~M~~~g~~--p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
+...++.++|++.+++....... | +..++..+...+...|+.++|...++...+.
T Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 187 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 56667778888888777553211 1 1466777777888888888888888887753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-09 Score=98.01 Aligned_cols=197 Identities=11% Similarity=0.061 Sum_probs=161.3
Q ss_pred CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
+..++..+...|...|++++|...|++ ... -...+..++..+...|...|+.++|...|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 66 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIED-------------------ALK-SDPKNELAWLVRAEIYQYLKVNDKAQESFR 66 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHH-------------------HHH-hCccchHHHHHHHHHHHHcCChHHHHHHHH
Confidence 456788889999999999999999998 322 123457789999999999999999999998
Q ss_pred cCCC---CChhhHHHHHHhhhhcCCccccchhhcc-CCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCChhHHHH
Q 035847 209 KIKQ---KHLVSWNAMLAGYALGGFREEITGFTQY-GDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKE 283 (523)
Q Consensus 209 ~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~-g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 283 (523)
...+ .+..+|..+.. .|... |++++|++.|+++.+.+..|+ ...+..+...+...|++++|.+
T Consensus 67 ~a~~~~~~~~~~~~~l~~------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 67 QALSIKPDSAEINNNYGW------------FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp HHHHHCTTCHHHHHHHHH------------HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhCCCChHHHHHHHH------------HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8753 46678888888 88899 999999999999988444454 5678888889999999999999
Q ss_pred HHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh
Q 035847 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363 (523)
Q Consensus 284 i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 363 (523)
.+..+.+.. +.+...|..+...|...|+. ++|..+|+...+. .-..+...+..+...+..
T Consensus 135 ~~~~~~~~~-----------------~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 194 (225)
T 2vq2_A 135 YLKRSLAAQ-----------------PQFPPAFKELARTKMLAGQL--GDADYYFKKYQSR-VEVLQADDLLLGWKIAKA 194 (225)
T ss_dssp HHHHHHHHS-----------------TTCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-----------------CCCchHHHHHHHHHHHcCCH--HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHh
Confidence 999988743 12456788899999999999 9999999998875 211457778888888899
Q ss_pred hCCHHHHHHHHHhC
Q 035847 364 AGQFDDTLNFMKKM 377 (523)
Q Consensus 364 ~g~~~~A~~~~~~m 377 (523)
.|+.++|..+++.+
T Consensus 195 ~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 195 LGNAQAAYEYEAQL 208 (225)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHH
Confidence 99999999888775
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-10 Score=104.43 Aligned_cols=209 Identities=11% Similarity=-0.002 Sum_probs=131.9
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC----cchHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN----VFSWTSMM 77 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~----~~~~~~li 77 (523)
.+++|+..|++..... ++...|..+..++...|+++.|...+....+..... .++ ..+|..+.
T Consensus 20 ~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 20 QFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-----------RADYKVISKSFARIG 86 (258)
T ss_dssp CHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-----------ccchHHHHHHHHHHH
Confidence 4689999999998877 788899999999999999999999999988753200 111 57889999
Q ss_pred HHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhcc
Q 035847 78 GMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157 (523)
Q Consensus 78 ~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 157 (523)
..|.+.|++++|+..|++..... |+ -..+.+.|++++|...+++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~---------------------------~~-------~~~~~~~~~~~~a~~~~~~-- 130 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEH---------------------------RT-------ADILTKLRNAEKELKKAEA-- 130 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---------------------------CC-------HHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHcccHHHHHHHHHHHHhcC---------------------------ch-------hHHHHHHhHHHHHHHHHHH--
Confidence 99999999999999998877632 22 1234444555555555555
Q ss_pred ccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCcccc
Q 035847 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEI 234 (523)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i 234 (523)
... ....+..++..+...|.+.|++++|...|+...+ .+...|..+..
T Consensus 131 -----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~----------- 181 (258)
T 3uq3_A 131 -----------------EAY-VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAA----------- 181 (258)
T ss_dssp -----------------HHH-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------
T ss_pred -----------------HHH-cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHH-----------
Confidence 222 1112334455555555555555555555554431 23444555555
Q ss_pred chhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 235 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.|.+.|++++|+..|++..+.. +.+..+|..+..++...|+.++|.+.++...+
T Consensus 182 -~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 182 -ALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp -HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5555555666666665555432 12345555555555556666666655555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.9e-09 Score=115.91 Aligned_cols=236 Identities=8% Similarity=0.010 Sum_probs=160.5
Q ss_pred CCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCC--CcchHHH--------------HhcCCCCCCcchHHHHHHHHH
Q 035847 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--ELCAFLG--------------MFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 18 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~--------------~f~~~~~~~~~~~~~li~~~~ 81 (523)
..|+.+ +..+++|...|+..++.++++.+...+- ..+..+. +-+-....|-....-+-..+.
T Consensus 983 ~~PeeV--s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai 1060 (1630)
T 1xi4_A 983 QDPEEV--SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAI 1060 (1630)
T ss_pred cCHHHh--HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHH
Confidence 345554 4466777778888888888887773321 0011111 000000112222334556777
Q ss_pred hcCCchHHHHHHHHhhHcc-HHHHhh-ccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc---
Q 035847 82 VLGYYEEIVNLFYLLIDEG-VYKACS-ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK--- 156 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g-ll~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~--- 156 (523)
+.|++++|+.+|++..... .+..+. ..+++++|.++.++. -+..+|..+-.++.+.|++++|...|.++
T Consensus 1061 ~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~ 1134 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP 1134 (1630)
T ss_pred hCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCCh
Confidence 8899999999998865433 233333 677888888888764 34678889999999999999999999884
Q ss_pred --------cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhc
Q 035847 157 --------DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228 (523)
Q Consensus 157 --------~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~ 228 (523)
.+...|.++++.+.+....+. .++..+.+.+..+|+|.+++++..... ..++...|..+-.
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd----- 1203 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD----- 1203 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH-----
Confidence 566667777777777765554 344445556888888888888655443 3556666776666
Q ss_pred CCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHH
Q 035847 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288 (523)
Q Consensus 229 g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~ 288 (523)
.|...|++++|..+|... ..|..+...+.+.|+++.|.+..+..
T Consensus 1204 -------~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1204 -------RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred -------HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 777888899999998874 48888888899999988888887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-09 Score=99.63 Aligned_cols=227 Identities=10% Similarity=-0.002 Sum_probs=160.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
+-..-..+.+.|++++|+..|++..+.. +.+..++..+...|.+.|++++|...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------------------------p~~~~~~~~l~~~~~~~~~~~~A~~~ 59 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--------------------------YNSPYIYNRRAVCYYELAKYDLAQKD 59 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT--------------------------CCCSTTHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344455666666666666666655432 33455888888899999999999999
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhh
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESD--LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYAL 227 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d--~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~ 227 (523)
|+++ ++. ...|+ ...|..+-..|.+.|+.++|...|+...+ .+..+|..+-.
T Consensus 60 ~~~a------------------~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~---- 116 (272)
T 3u4t_A 60 IETY------------------FSK-VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS---- 116 (272)
T ss_dssp HHHH------------------HTT-SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH----
T ss_pred HHHH------------------Hhc-cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH----
Confidence 9881 221 22222 33478888889999999999999887643 35567888888
Q ss_pred cCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhh
Q 035847 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306 (523)
Q Consensus 228 ~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 306 (523)
.|.+.|++++|++.|++..+. .|+ ..++..+-..+...+++++|.+.++.+.+..
T Consensus 117 --------~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 172 (272)
T 3u4t_A 117 --------YFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-------------- 172 (272)
T ss_dssp --------HHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------
T ss_pred --------HHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 888899999999999888765 443 4555555424444558999999998887742
Q ss_pred hCCCCCcchHHHHHHHHHhcCC---CchHHHHHHHHHhHHhcCCccCH------hHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 307 QGLGTGSFVWNSLIDMYGRCGA---IQKNEGWRYFEMMKKEYNMEPAM------EQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 307 y~~~p~~~~~n~li~~~~~~g~---~~~~~a~~~~~~m~~~~g~~p~~------~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+.+...|..+...+...|+ . ++|...|+...+...-.|+. ..|..+-..|.+.|++++|.+.+++.
T Consensus 173 ---p~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 173 ---PNIYIGYLWRARANAAQDPDTKQ--GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp ---TTCHHHHHHHHHHHHHHSTTCSS--CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHHHcCcchhh--HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1234566667777777787 7 77888888877653334552 57778888888999999998888774
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-09 Score=100.58 Aligned_cols=209 Identities=8% Similarity=0.036 Sum_probs=162.7
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhc-CCCCCc--
Q 035847 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK-DDLESD-- 183 (523)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~d-- 183 (523)
..|++++|.+.+...++.. .+..++..+...|...|++++|...|+++ ++. ....++
T Consensus 17 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------------------~~~~~~~~~~~~ 76 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDA------------------VEQGREMRADYK 76 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHHHHTTCCHH
T ss_pred HhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHH------------------HHhCcccccchH
Confidence 3344444444444444444 77889999999999999999999999981 111 011122
Q ss_pred --hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCC
Q 035847 184 --LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259 (523)
Q Consensus 184 --~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~ 259 (523)
..++..+...|.+.|++++|...|+...+ |+. . .+.+.|++++|+..|+.+... .
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~------------~~~~~~~~~~a~~~~~~~~~~--~ 135 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------D------------ILTKLRNAEKELKKAEAEAYV--N 135 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------H------------HHHHHHHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------H------------HHHHHhHHHHHHHHHHHHHHc--C
Confidence 57889999999999999999999998753 442 2 455678899999999998874 3
Q ss_pred C-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHH
Q 035847 260 P-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338 (523)
Q Consensus 260 p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~ 338 (523)
| +...+..+...+...|++++|.+.++.+.+.. +.+..+|..+...|...|+. ++|...|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~~~~~~~l~~~~~~~~~~--~~A~~~~ 196 (258)
T 3uq3_A 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----------------PEDARGYSNRAAALAKLMSF--PEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCH--HHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------cccHHHHHHHHHHHHHhCCH--HHHHHHH
Confidence 4 45677788888999999999999999998743 22456889999999999999 9999999
Q ss_pred HHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 339 ~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+...+. . ..+...|..+...+.+.|++++|.+.+++.
T Consensus 197 ~~al~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 197 NKAIEK-D-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHh-C-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999875 2 334788999999999999999999998874
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-08 Score=103.92 Aligned_cols=339 Identities=9% Similarity=0.046 Sum_probs=217.7
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH---------------------H
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------------M 61 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---------------------~ 61 (523)
+++|..+|+++... .+-+...|..++..+.+.|+++.|..+++..++.....+.+.. +
T Consensus 28 ~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 28 IDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp HHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 57889999998875 2335567888889888999999999999998876432221111 2
Q ss_pred hcC------CCCCCcchHHHHHHHHHh---------cCCchHHHHHHHHhhHcc------HHHHhh--------------
Q 035847 62 FEK------MPERNVFSWTSMMGMYNV---------LGYYEEIVNLFYLLIDEG------VYKACS-------------- 106 (523)
Q Consensus 62 f~~------~~~~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g------ll~~~~-------------- 106 (523)
|+. ...++...|...+....+ .|++++|..+|++..... +...+.
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~ 186 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKM 186 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHH
Confidence 221 111345667776665544 678888888888866532 111111
Q ss_pred ---ccCChHHHHHHHHHHHHh--cC-------CCC--------ceeHhHHHHHHHhc----CCH----HHHHHHhhhc--
Q 035847 107 ---ELKDHRVGKDVYDYMISI--KF-------EGN--------ACVKRPVLDMFIKC----GRM----EMASGEFEEK-- 156 (523)
Q Consensus 107 ---~~~~~~~a~~~~~~m~~~--g~-------~p~--------~~~~~~li~~~~~~----g~~----~~A~~~f~~~-- 156 (523)
..+++..|..++...... ++ .|+ ...|...+...... ++. +.|..+|+++
T Consensus 187 l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~ 266 (530)
T 2ooe_A 187 IEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266 (530)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH
Confidence 223445555555542211 12 232 13444444333221 222 3566677663
Q ss_pred --------------ccc-------ccCchh-------hHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHH
Q 035847 157 --------------DFS-------NLSLLK-------HGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKF 207 (523)
Q Consensus 157 --------------~~~-------~~~~~~-------~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf 207 (523)
... ..|+++ .+..++...++. +.| +...|..+...+.+.|++++|..+|
T Consensus 267 ~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~--~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT--TCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 111 245655 677777777653 234 5778889999999999999999999
Q ss_pred hcCCC--CCh--hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHH-hhccCChhHH
Q 035847 208 SKIKQ--KHL--VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAA-CAQVKGFKLG 281 (523)
Q Consensus 208 ~~m~~--~~~--~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a 281 (523)
+...+ |+. ..|..+.. .+.+.|++++|.++|++..+. .|+ ...|...... +...|+.+.|
T Consensus 345 ~~al~~~p~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 345 NRLLAIEDIDPTLVYIQYMK------------FARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HHHHHSSSSCHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhCccccCchHHHHHHHH------------HHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHH
Confidence 87643 432 47888887 777888899999999988764 232 2333322212 2357889999
Q ss_pred HHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC--HhHHHHHHH
Q 035847 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA--MEQYCCMVD 359 (523)
Q Consensus 282 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~--~~ty~~li~ 359 (523)
..+++..++.. +.+...|..++..+.+.|+. ++|..+|++........|+ ...|...+.
T Consensus 411 ~~~~e~al~~~-----------------p~~~~~~~~~~~~~~~~g~~--~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 411 FKIFELGLKKY-----------------GDIPEYVLAYIDYLSHLNED--NNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHH-----------------TTCHHHHHHHHHHHTTTTCH--HHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHC-----------------CCCHHHHHHHHHHHHhCCCH--hhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 99998887742 12456788888888899999 9999999988775223443 447777777
Q ss_pred HHHhhCCHHHHHHHHHhC
Q 035847 360 LLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m 377 (523)
.....|+.+.+..+.+++
T Consensus 472 ~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 777888888888777664
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.1e-10 Score=100.63 Aligned_cols=195 Identities=12% Similarity=-0.007 Sum_probs=149.7
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 147 (523)
++...|..+-..+.+.|++++|+..|++..+.. +.+...+..+-..|.+.|+++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~a~~~lg~~~~~~g~~~ 56 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN--------------------------PQDPEALYWLARTQLKLGLVN 56 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------------------------SSCHHHHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHH
Confidence 467788888888999999999999998877643 446778889999999999999
Q ss_pred HHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhc-----------CChHHHHHHHhcCCC--C
Q 035847 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKC-----------RYLKVAHCKFSKIKQ--K 213 (523)
Q Consensus 148 ~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~-----------g~~~~A~~vf~~m~~--~ 213 (523)
+|...|++ .-. ..| +...+..+-..|.+. |+.++|...|+...+ |
T Consensus 57 ~A~~~~~~-------------------al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 115 (217)
T 2pl2_A 57 PALENGKT-------------------LVA--RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115 (217)
T ss_dssp HHHHHHHH-------------------HHH--HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHH-------------------HHH--hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc
Confidence 99999998 222 234 567888888999999 999999999988753 4
Q ss_pred -ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 214 -HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 214 -~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
+...|..+-. .|.+.|++++|+..|++..+.. .+...+..+-.++...|+.++|...++...+..
T Consensus 116 ~~~~~~~~lg~------------~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 116 RYAPLHLQRGL------------VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp TCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHH------------HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567888877 8889999999999999999877 788889999999999999999999999998742
Q ss_pred CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhH
Q 035847 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342 (523)
Q Consensus 293 ~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~ 342 (523)
+.+...+..+...+...|+. ++|...|++..
T Consensus 182 -----------------P~~~~~~~~la~~~~~~g~~--~~A~~~~~~~~ 212 (217)
T 2pl2_A 182 -----------------PKDLDLRVRYASALLLKGKA--EEAARAAALEH 212 (217)
T ss_dssp -----------------TTCHHHHHHHHHHHTC-----------------
T ss_pred -----------------CCChHHHHHHHHHHHHccCH--HHHHHHHHHHh
Confidence 22456788888999999999 99999887654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.4e-08 Score=98.99 Aligned_cols=335 Identities=11% Similarity=0.011 Sum_probs=235.7
Q ss_pred CcchHHHHHHhccC----CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh----cCCchHHHHH
Q 035847 21 CTVTYALIFQRCPK----LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV----LGYYEEIVNL 92 (523)
Q Consensus 21 ~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l 92 (523)
|..++..+-..+.. .++++.|...+....+.| +...+..|-..|.. .+++++|++.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----------------YTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 34444444444444 678888888888777654 45677777777777 7888899999
Q ss_pred HHHhhHcc-------HHHHhhc----cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHh----cCCHHHHHHHhhhcc
Q 035847 93 FYLLIDEG-------VYKACSE----LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK----CGRMEMASGEFEEKD 157 (523)
Q Consensus 93 ~~~m~~~g-------ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f~~~~ 157 (523)
|++..+.| +-..+.. .++.++|.+.+....+.| +...+..|-..|.. .++.++|...|++
T Consensus 102 ~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~-- 176 (490)
T 2xm6_A 102 YKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK-- 176 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH--
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH--
Confidence 88877766 3334444 678888888888887765 45667777777777 7788888888887
Q ss_pred ccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChhhHHHHHHhhhhcCCcc
Q 035847 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK----CRYLKVAHCKFSKIKQ-KHLVSWNAMLAGYALGGFRE 232 (523)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k----~g~~~~A~~vf~~m~~-~~~~t~~~li~~~~~~g~~~ 232 (523)
..+. | +...+..|-..|.+ .++.++|...|+...+ .+..++..+-.
T Consensus 177 ----------------a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~--------- 227 (490)
T 2xm6_A 177 ----------------AAEQ-G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLAD--------- 227 (490)
T ss_dssp ----------------HHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH---------
T ss_pred ----------------HHHC-C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHH---------
Confidence 1222 3 56778888888988 8999999999987653 46667777777
Q ss_pred ccchhhc----cCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc----cCChhHHHHHHHHHHHhcCCchHHHHhHHH
Q 035847 233 EITGFTQ----YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ----VKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304 (523)
Q Consensus 233 ~i~~~~~----~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li 304 (523)
.|.. .+++++|.++|+...+.| +...+..+-..+.. .++.++|.+.++...+.|
T Consensus 228 ---~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~------------ 289 (490)
T 2xm6_A 228 ---MYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG------------ 289 (490)
T ss_dssp ---HHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT------------
T ss_pred ---HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC------------
Confidence 5554 789999999999988765 34445555555555 789999999999998765
Q ss_pred hhhCCCCCcchHHHHHHHHHhc-----CCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhC---CHHHHHHHHHh
Q 035847 305 SIQGLGTGSFVWNSLIDMYGRC-----GAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG---QFDDTLNFMKK 376 (523)
Q Consensus 305 ~~y~~~p~~~~~n~li~~~~~~-----g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~~~~~ 376 (523)
+...+..+-..|... ++. ++|..+|+...+. | +...+..|-..|.+.| +.++|.+++++
T Consensus 290 -------~~~a~~~Lg~~y~~~~~g~~~~~--~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 290 -------NSDGQYYLAHLYDKGAEGVAKNR--EQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp -------CHHHHHHHHHHHHHCBTTBCCCH--HHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHcCCCCCcCCH--HHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 334556666677766 788 9999999998875 4 4566777777777766 78999999887
Q ss_pred CCCCCCCC--------------CCCCHHHHHHHHHHHHhhCCCCCccee----EEEecCCCCchHHHHHHHHHHHHHHHH
Q 035847 377 MPFEPSSA--------------EPCNPDIAEHAARHLFELEPLSSGKVH----SFIAGDTSHSLVHKISEKLMRLYSEIK 438 (523)
Q Consensus 377 m~~~p~~~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~~m~ 438 (523)
.--..+.. ..++.+.|...+++..+..+ +..++ .+..|....+..+++. +.+++-.
T Consensus 357 a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--~~a~~~Lg~~y~~g~g~~~d~~~A~----~~~~~A~ 430 (490)
T 2xm6_A 357 AAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL--SAAQVQLGEIYYYGLGVERDYVQAW----AWFDTAS 430 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHH----HHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCCCCCHHHHH----HHHHHHH
Confidence 42112221 36899999988888877542 22111 1123444567778875 4455555
Q ss_pred HcCC
Q 035847 439 KIGY 442 (523)
Q Consensus 439 ~~g~ 442 (523)
+.|.
T Consensus 431 ~~~~ 434 (490)
T 2xm6_A 431 TNDM 434 (490)
T ss_dssp HHHC
T ss_pred HCCC
Confidence 5553
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-09 Score=109.16 Aligned_cols=345 Identities=8% Similarity=-0.025 Sum_probs=210.8
Q ss_pred CCCcchHHHHHHhccCCCChHHHHHHHHHHHHhC--CCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 035847 19 DECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG--VELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL 96 (523)
Q Consensus 19 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 96 (523)
......||.|-..+...|+.++|.+.+.+..+.- ..+ +.......++|+.+-..|...|++++|+..|++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-------~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka 120 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-------DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV 120 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-------GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-------cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3345678888888889999999999998775420 000 0001234678999999999999999999999876
Q ss_pred hHcc-----------------HHHHhh--ccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHH---HHhcCCHHHHHHHh
Q 035847 97 IDEG-----------------VYKACS--ELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDM---FIKCGRMEMASGEF 153 (523)
Q Consensus 97 ~~~g-----------------ll~~~~--~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~---~~~~g~~~~A~~~f 153 (523)
.... .-.++. ..++.++|.+.|++.++. .|+ ...+..+... +...++.++|+..|
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198 (472)
T ss_dssp HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHH
T ss_pred HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 5421 111122 235678899999888876 354 4444444444 33456667777777
Q ss_pred hhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCC---CCChhhHHHHHHhhh
Q 035847 154 EEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK----CRYLKVAHCKFSKIK---QKHLVSWNAMLAGYA 226 (523)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k----~g~~~~A~~vf~~m~---~~~~~t~~~li~~~~ 226 (523)
++ .++. -+.+..++..+...+.+ .|+.++|.+.+++.. ..+...|+.+-.
T Consensus 199 ~~------------------al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~--- 255 (472)
T 4g1t_A 199 RQ------------------AIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK--- 255 (472)
T ss_dssp HH------------------HHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHH---
T ss_pred HH------------------Hhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHH---
Confidence 66 1222 12234555555544544 456788888887653 235567888888
Q ss_pred hcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhcc-------------------CChhHHHHHHH
Q 035847 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQV-------------------KGFKLGKEIHG 286 (523)
Q Consensus 227 ~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~-------------------g~~~~a~~i~~ 286 (523)
.|.+.|++++|++.|++..+. .|+ ..++..+-..+... +..+.|...+.
T Consensus 256 ---------~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 324 (472)
T 4g1t_A 256 ---------FYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK 324 (472)
T ss_dssp ---------HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888999999999999998774 454 34444443333211 11223333333
Q ss_pred HHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH--hHHHHHHH-HHHh
Q 035847 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM--EQYCCMVD-LLAR 363 (523)
Q Consensus 287 ~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~--~ty~~li~-~~~~ 363 (523)
...+.. +.+..+|..+-..|...|+. ++|...|+...+. ...|.. ..+..+.. .+..
T Consensus 325 ~a~~~~-----------------~~~~~~~~~lg~~~~~~~~~--~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~ 384 (472)
T 4g1t_A 325 KADEAN-----------------DNLFRVCSILASLHALADQY--EEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQ 384 (472)
T ss_dssp HHHHHC-----------------TTTCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcC-----------------CchhhhhhhHHHHHHHhccH--HHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHH
Confidence 333211 34667899999999999999 9999999988764 333322 12222222 3346
Q ss_pred hCCHHHHHHHHHh-CCCCCCCC-CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHH
Q 035847 364 AGQFDDTLNFMKK-MPFEPSSA-EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKI 426 (523)
Q Consensus 364 ~g~~~~A~~~~~~-m~~~p~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (523)
.|+.++|...+++ +.+.|+.. ..+....++..+++.++.+|.++..++.+-.-+...|+.+++
T Consensus 385 ~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 385 MKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp SSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999877 35666654 333345556677778888888876554433223333333333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=100.51 Aligned_cols=199 Identities=10% Similarity=0.052 Sum_probs=137.2
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
...+|..+-..+...|+++.|...++.+.+.. ..+..+|..+...|.+.|++++|++.|++.....
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--------------KEDAIPYINFANLLSSVNELERALAFYDKALELD 87 (243)
T ss_dssp --------------------CCTTHHHHHTTC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44556666666677777777777777776543 2356677777777777777777777777765532
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+.+..++..+...|.+.|++++|...|++ ... -.
T Consensus 88 --------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~-------------------~~~-~~ 121 (243)
T 2q7f_A 88 --------------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEK-------------------ALR-AG 121 (243)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HT
T ss_pred --------------------------CcchHHHHHHHHHHHHhccHHHHHHHHHH-------------------HHH-hC
Confidence 34667788888899999999999999988 322 12
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
..+..++..+...|.+.|+.++|...++...+ .+...|..+.. .+.+.|++++|++.|++..+..
T Consensus 122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGM------------CLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHhC
Confidence 34567788888999999999999999887642 45667888888 8888999999999999887753
Q ss_pred CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 258 ~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
..+..++..+..++...|+.++|.+.++.+.+..
T Consensus 190 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 190 -PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp -TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred -cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 2356778888888999999999999999888753
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-09 Score=101.20 Aligned_cols=200 Identities=12% Similarity=0.048 Sum_probs=133.8
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 67 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
.....+|..+-..+.+.|++++|+..|++..... +.+..++..+...|.+.|++
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------------------------~~~~~~~~~la~~~~~~~~~ 73 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--------------------------KEDAIPYINFANLLSSVNEL 73 (243)
T ss_dssp ----------------------CCTTHHHHHTTC--------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHcCCH
Confidence 3456677778888888888888888888876543 44677888888899999999
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLA 223 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~ 223 (523)
++|...|++ ... -...+..++..+...|.+.|++++|...|+...+ .+...|..+..
T Consensus 74 ~~A~~~~~~-------------------~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 133 (243)
T 2q7f_A 74 ERALAFYDK-------------------ALE-LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGT 133 (243)
T ss_dssp HHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHH-------------------HHH-cCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999988 222 1233567888888888889999999888887642 45667777777
Q ss_pred hhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHH
Q 035847 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303 (523)
Q Consensus 224 ~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~l 303 (523)
.+.+.|++++|+..|++..+.. +.+...+..+...+...|+.++|...+..+.+..
T Consensus 134 ------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------- 189 (243)
T 2q7f_A 134 ------------VLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD----------- 189 (243)
T ss_dssp ------------HHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-----------
T ss_pred ------------HHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 7788888999998888887653 2356677777778888888888888888777642
Q ss_pred HhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 304 i~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
+.+..+|..+...|...|+. ++|..+|+...+.
T Consensus 190 ------~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 190 ------PGHADAFYNAGVTYAYKENR--EKALEMLDKAIDI 222 (243)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCT--THHHHHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHccCH--HHHHHHHHHHHcc
Confidence 12345677788888888888 8888888887754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-09 Score=96.24 Aligned_cols=194 Identities=13% Similarity=0.039 Sum_probs=149.5
Q ss_pred CCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 035847 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206 (523)
Q Consensus 127 ~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~v 206 (523)
+++...+..+-..+.+.|++++|...|++ .-. --+.+...+..+-..|.+.|+.++|...
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------al~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 61 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFER-------------------ALK-ENPQDPEALYWLARTQLKLGLVNPALEN 61 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHT-TSSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46777888899999999999999999998 332 1233577889999999999999999999
Q ss_pred HhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhcc-----------CCchHHHHHHHHHHhcCCCC-CHHHHHHHHHH
Q 035847 207 FSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQY-----------GDGETALEFFSRMIQTDMQP-NTISLSGVLAA 271 (523)
Q Consensus 207 f~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~-----------g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a 271 (523)
|++.. .| +...|..+-. .+.+. |++++|+..|++..+. .| +...+..+-.+
T Consensus 62 ~~~al~~~P~~~~a~~~lg~------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~ 127 (217)
T 2pl2_A 62 GKTLVARTPRYLGGYMVLSE------------AYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLV 127 (217)
T ss_dssp HHHHHHHCTTCHHHHHHHHH------------HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHH------------HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 99865 34 4567888888 77788 9999999999999874 45 46678888888
Q ss_pred hhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-
Q 035847 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA- 350 (523)
Q Consensus 272 ~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~- 350 (523)
+...|+.++|...++..++.. . +...|..+-..|...|+. ++|...|+...+. .|+
T Consensus 128 ~~~~g~~~~A~~~~~~al~~~--~----------------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~---~P~~ 184 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALALE--D----------------TPEIRSALAELYLSMGRL--DEALAQYAKALEQ---APKD 184 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--C----------------CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH---STTC
T ss_pred HHHcCChHHHHHHHHHHHhcc--c----------------chHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh---CCCC
Confidence 999999999999999998865 2 446788899999999999 9999999999875 454
Q ss_pred HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 351 MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 351 ~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
...+..+...+.+.|++++|...+++.
T Consensus 185 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 185 LDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHTC--------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 678888999999999999999998875
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.7e-08 Score=93.53 Aligned_cols=222 Identities=11% Similarity=0.008 Sum_probs=172.7
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--- 100 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--- 100 (523)
.+...-..+...|+++.|...+....+.. ..+..+|..+...|.+.|++++|+..|++....+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 70 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--------------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT 70 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--------------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch
Confidence 34455566778999999999999998764 2356689999999999999999999999887633
Q ss_pred ---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHh
Q 035847 101 ---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171 (523)
Q Consensus 101 ---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ 171 (523)
+...+...|+++.|.+.+....+.. +.+..++..+-..|.+.|++++|...|++
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---------------- 133 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEK---------------- 133 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGG----------------
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHH----------------
Confidence 5666778999999999999999874 44667899999999999999999999999
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCC---chH
Q 035847 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGD---GET 245 (523)
Q Consensus 172 ~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~---~~~ 245 (523)
... -...+..++..+-..+...+++++|...|+...+ | +...|..+.. .+...|+ +++
T Consensus 134 ---al~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~------------~~~~~~~~~~~~~ 197 (272)
T 3u4t_A 134 ---QIR-PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRAR------------ANAAQDPDTKQGL 197 (272)
T ss_dssp ---GCC-SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH------------HHHHHSTTCSSCT
T ss_pred ---Hhh-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHH------------HHHHcCcchhhHH
Confidence 332 1223456666666233445699999999998753 4 3566777767 6666677 888
Q ss_pred HHHHHHHHHhc-CCCCC------HHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 246 ALEFFSRMIQT-DMQPN------TISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 246 A~~lf~~M~~~-g~~p~------~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
|...|++..+. .-.|+ ..+|..+-..+...|+.++|.+.++...+..
T Consensus 198 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp THHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999888763 22243 2567778888899999999999999998753
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-08 Score=108.54 Aligned_cols=256 Identities=11% Similarity=0.048 Sum_probs=166.1
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG 144 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 144 (523)
+..+|..+-.++.+.|++++|++.|.+-.... +..+|.+.|+++++.+.+....+.. ++..+.+.+.-.|+|.+
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 46789999999999999999999997653222 8999999999999999999877753 66666667999999999
Q ss_pred CHHHHHHHhhhc----------cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 035847 145 RMEMASGEFEEK----------DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH 214 (523)
Q Consensus 145 ~~~~A~~~f~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~ 214 (523)
++++...+.+.. .|-+.+.++.|..++..+ ..|..+...|.+.|++++|.+.++.. .+
T Consensus 1182 rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA--~n 1249 (1630)
T 1xi4_A 1182 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA--NS 1249 (1630)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh--CC
Confidence 998654443321 333344444444444432 24555555555556666655555543 33
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
..+|..+-. +|...|++..|...... +..+...+..++..|.+.|.+++|..+++..+.. .
T Consensus 1250 ~~aWkev~~------------acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--e 1310 (1630)
T 1xi4_A 1250 TRTWKEVCF------------ACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL--E 1310 (1630)
T ss_pred HHHHHHHHH------------HHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--C
Confidence 455555555 55555555555544332 3334455556666777777777777776554421 1
Q ss_pred chHHHHhHHHhhhCCCCCcchHHHHHHHHHhcC--CCchHHHHHHHHHhHHhcCCcc------CHhHHHHHHHHHHhhCC
Q 035847 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG--AIQKNEGWRYFEMMKKEYNMEP------AMEQYCCMVDLLARAGQ 366 (523)
Q Consensus 295 ~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g--~~~~~~a~~~~~~m~~~~g~~p------~~~ty~~li~~~~~~g~ 366 (523)
......|+-|-..|++.. +. .++.++|. ++-++.| +...|.-++-.|.+.|+
T Consensus 1311 ---------------raH~gmftELaiLyaKy~pekl--mEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A 1311 ---------------RAHMGMFTELAILYSKFKPQKM--REHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred ---------------hhHhHHHHHHHHHHHhCCHHHH--HHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhccc
Confidence 224456777777777653 33 44444444 3324444 36779999999999999
Q ss_pred HHHHHHHHHhC
Q 035847 367 FDDTLNFMKKM 377 (523)
Q Consensus 367 ~~~A~~~~~~m 377 (523)
++.|...+-+-
T Consensus 1371 ~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1371 YDNAIITMMNH 1381 (1630)
T ss_pred HHHHHHHHHhc
Confidence 99998776554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.2e-09 Score=105.00 Aligned_cols=277 Identities=13% Similarity=0.070 Sum_probs=193.2
Q ss_pred HHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCc----chHHHHHHHHHhcCCchHHHHHHHHhhHccHH
Q 035847 27 LIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNV----FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102 (523)
Q Consensus 27 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll 102 (523)
.+-..+...|+++.|...++...+... .+. .+|..+-..|...|++++|+..|++....
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 115 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGT--------------EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL--- 115 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC--------------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcc--------------cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 344556677888888888888877642 122 46777777888888888888888775431
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC-C
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL-E 181 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ 181 (523)
+...++ -.....++..+-..|...|++++|...|++ +.++... . +- .
T Consensus 116 --~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----------al~~~~~---~-~~~~ 163 (411)
T 4a1s_A 116 --AKSMND---------------RLGEAKSSGNLGNTLKVMGRFDEAAICCER-----------HLTLARQ---L-GDRL 163 (411)
T ss_dssp --HHHTTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHH---H-TCHH
T ss_pred --HHHccC---------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHH-----------HHHHHHH---h-hchH
Confidence 011111 012345677888999999999999999998 1111111 1 21 2
Q ss_pred CchhHHHHHHHHHHhcCC-----------------hHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcCCccccc
Q 035847 182 SDLLVNNSLMDFYAKCRY-----------------LKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGGFREEIT 235 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~-----------------~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g~~~~i~ 235 (523)
....++..+-..|...|+ +++|...+++..+ ++ ..+|..+-.
T Consensus 164 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~------------ 231 (411)
T 4a1s_A 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGN------------ 231 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------
Confidence 235678889999999999 9999888876432 11 236667777
Q ss_pred hhhccCCchHHHHHHHHHHhcCC-CCC----HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCC
Q 035847 236 GFTQYGDGETALEFFSRMIQTDM-QPN----TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 310 (523)
.|...|++++|++.|++..+... .++ ..++..+...+...|++++|.+.++...+..-..... .
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~ 300 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER-----------E 300 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH-----------H
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH-----------H
Confidence 88899999999999998865311 112 2377788889999999999999998887632110000 0
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC----HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 311 TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA----MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 311 p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
....+|..+...|...|+. ++|..+|++..+...-.++ ..+|..+...|.+.|++++|.+.+++.
T Consensus 301 ~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEF--NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1235788899999999999 9999999987654111111 457888899999999999999998874
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.01 E-value=9.3e-09 Score=99.26 Aligned_cols=277 Identities=13% Similarity=0.058 Sum_probs=195.4
Q ss_pred HHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC----cchHHHHHHHHHhcCCchHHHHHHHHhhHccHH
Q 035847 27 LIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN----VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102 (523)
Q Consensus 27 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll 102 (523)
..-..+...|+++.|...++...+... .+ ...|..+...|...|++++|++.|++.....
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 73 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT--------------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-- 73 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC--------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc--------------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--
Confidence 344556688999999999999988642 12 4678888889999999999999998755421
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC-C
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL-E 181 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ 181 (523)
...++. .....++..+-..|...|++++|...|+++ .++.. +. +- .
T Consensus 74 ---~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-----------l~~~~---~~-~~~~ 120 (338)
T 3ro2_A 74 ---RTIGDQ---------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRH-----------LDISR---EL-NDKV 120 (338)
T ss_dssp ---HHHTCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHH---HT-TCHH
T ss_pred ---hccccc---------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHH-----------HHHHH---Hh-cCch
Confidence 111110 112456778889999999999999999881 11111 11 11 1
Q ss_pred CchhHHHHHHHHHHhcCC--------------------hHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcCCcc
Q 035847 182 SDLLVNNSLMDFYAKCRY--------------------LKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGGFRE 232 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~--------------------~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g~~~ 232 (523)
....++..+...|...|+ +++|...++...+ ++ ..+|..+..
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~--------- 191 (338)
T 3ro2_A 121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGN--------- 191 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------
Confidence 124578888899999999 8999888876532 12 235666767
Q ss_pred ccchhhccCCchHHHHHHHHHHhc----CCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh
Q 035847 233 EITGFTQYGDGETALEFFSRMIQT----DMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307 (523)
Q Consensus 233 ~i~~~~~~g~~~~A~~lf~~M~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 307 (523)
.|...|++++|.+.|++..+. +..+ ...++..+...+...|+.++|.+.+....+..-..+..
T Consensus 192 ---~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------- 259 (338)
T 3ro2_A 192 ---THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR--------- 259 (338)
T ss_dssp ---HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------
T ss_pred ---HHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch---------
Confidence 888999999999999987652 1111 13477788888999999999999998887532110000
Q ss_pred CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC----HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA----MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 308 ~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.....++..+...|...|+. ++|..+|+...+...-.++ ..++..+...|.+.|++++|.+.+++.
T Consensus 260 --~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 260 --AVEAQSCYSLGNTYTLLQDY--EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp --HHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 00135678888999999999 9999999887653111111 457888999999999999999998874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.00 E-value=8.8e-08 Score=92.37 Aligned_cols=212 Identities=11% Similarity=0.078 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHhcCCCCceeHhHHHHHHHh-------cCCH-------HHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIK-------CGRM-------EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 113 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
.|..+|++.++.. +.+...|..+...+.. .|++ ++|..+|+++ ++
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rA------------------l~-- 92 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA------------------IS-- 92 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH------------------HT--
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHH------------------HH--
Confidence 3444555554432 4567788888877763 5886 8899998881 32
Q ss_pred CCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hh-hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHH
Q 035847 179 DLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH-LV-SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253 (523)
Q Consensus 179 g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~-~~-t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M 253 (523)
.+.| +...|..+...+.+.|++++|..+|++..+ |+ .. .|..+.. .+.+.|++++|..+|++.
T Consensus 93 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 93 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMK------------FARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHH------------HHHHHHCHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHH------------HHHHhcCHHHHHHHHHHH
Confidence 1345 456899999999999999999999998754 43 33 7999988 888999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHh-hccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchH
Q 035847 254 IQTDMQPNTISLSGVLAAC-AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332 (523)
Q Consensus 254 ~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~ 332 (523)
.+... ++...|....... ...|+.+.|.++++..++.. +.+...|..++..+.+.|+. +
T Consensus 161 ~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~~~~~~~~~g~~--~ 220 (308)
T 2ond_A 161 REDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----------------GDIPEYVLAYIDYLSHLNED--N 220 (308)
T ss_dssp HTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHHTTCCH--H
T ss_pred HhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCcHHHHHHHHHHHHHCCCH--H
Confidence 87532 3444554433332 23699999999999988742 12457889999999999999 9
Q ss_pred HHHHHHHHhHHhcCCccC--HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 333 EGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 333 ~a~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+|..+|++......+.|+ ...|..++..+.+.|+.++|..++++.
T Consensus 221 ~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999875224663 578888999999999999999888774
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.7e-09 Score=103.58 Aligned_cols=271 Identities=12% Similarity=0.011 Sum_probs=196.1
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-------------HHHHhhccCChHHHHHHHHHHHHhc----CCC-C
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------------VYKACSELKDHRVGKDVYDYMISIK----FEG-N 129 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------ll~~~~~~~~~~~a~~~~~~m~~~g----~~p-~ 129 (523)
.....|...-..+.+.|++++|+..|++....+ +...+...|+++.|...+....+.. -.| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 455666777788889999999999999887654 5566778899999999998876542 112 2
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCC----------
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY---------- 199 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~---------- 199 (523)
..++..+-..|...|++++|...|+++ ..+.. +.........++..+-..|...|+
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRH-----------LDISR---ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHH---HHTCHHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHH---hcccccchHHHHHHHHHHHHHcCCcccccccchh
Confidence 457888889999999999999999881 11111 110111125578888899999999
Q ss_pred ----------hHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC-CC
Q 035847 200 ----------LKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD-MQ 259 (523)
Q Consensus 200 ----------~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g-~~ 259 (523)
+++|...++...+ ++ ..+|+.+-. .|...|++++|+..|++..+.. -.
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGN------------THYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH------------HHHHccCHHHHHHHHHHHHHHHHhc
Confidence 8888888776431 12 235777777 8889999999999999886521 11
Q ss_pred CC----HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHH
Q 035847 260 PN----TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335 (523)
Q Consensus 260 p~----~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~ 335 (523)
++ ..++..+-..+...|++++|...+....+..-..... .....++..+-..|...|+. ++|.
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~--~~A~ 287 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-----------AVEAQSCYSLGNTYTLLQDY--EKAI 287 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCH--HHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc-----------hHHHHHHHHHHHHHHHhCcH--HHHH
Confidence 22 2477788888999999999999998887532110000 00135788899999999999 9999
Q ss_pred HHHHHhHHhcCCccC----HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 336 RYFEMMKKEYNMEPA----MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 336 ~~~~~m~~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.+|+...+...-.++ ..++..+...|.+.|++++|.+.+++.
T Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 288 DYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999887654111122 567888889999999999999998874
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-08 Score=99.27 Aligned_cols=227 Identities=9% Similarity=0.019 Sum_probs=175.9
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCC-HHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR-MEM 148 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~ 148 (523)
...|+.+-..+.+.|++++|+..|++..... +-+..+|+.+-..|.+.|+ +++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--------------------------P~~~~a~~~~g~~l~~~g~d~~e 150 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--------------------------AANYTVWHFRRVLLKSLQKDLHE 150 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--------------------------ccCHHHHHHHHHHHHHcccCHHH
Confidence 3567777778888888888888888776643 3457788999999999997 999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGY 225 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~ 225 (523)
|+..|+++ ++. -.-+..+|+.+-..|.+.|++++|...|+...+ .+...|+.+-.
T Consensus 151 Al~~~~~a------------------l~l--~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~-- 208 (382)
T 2h6f_A 151 EMNYITAI------------------IEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW-- 208 (382)
T ss_dssp HHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH--
T ss_pred HHHHHHHH------------------HHH--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHH--
Confidence 99999991 222 123577899999999999999999999998753 46778998888
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cCChhHH-----HHHHHHHHHhcCCchHHH
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ-VKGFKLG-----KEIHGYVLRHHIQLSTGV 299 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~-~g~~~~a-----~~i~~~~~~~g~~~~~~~ 299 (523)
.+.+.|++++|+..|+++.+... -+...|+.+-.++.+ .|..++| .+.+...++..
T Consensus 209 ----------~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~------- 270 (382)
T 2h6f_A 209 ----------VIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV------- 270 (382)
T ss_dssp ----------HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-------
T ss_pred ----------HHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-------
Confidence 88899999999999999998542 256788888888888 5655777 36666666532
Q ss_pred HhHHHhhhCCCCCcchHHHHHHHHHhcC--CCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhC---------CHH
Q 035847 300 GIALISIQGLGTGSFVWNSLIDMYGRCG--AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG---------QFD 368 (523)
Q Consensus 300 ~~~li~~y~~~p~~~~~n~li~~~~~~g--~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g---------~~~ 368 (523)
+-+...|+.+-..|...| +. ++|.+.+..+ + .-..+...+..+.+.|.+.| .++
T Consensus 271 ----------P~~~~a~~~l~~ll~~~g~~~~--~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~ 335 (382)
T 2h6f_A 271 ----------PHNESAWNYLKGILQDRGLSKY--PNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 335 (382)
T ss_dssp ----------TTCHHHHHHHHHHHTTTCGGGC--HHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHccCccch--HHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 225568999999999988 58 9999999887 3 23445678889999998874 257
Q ss_pred HHHHHHHhC
Q 035847 369 DTLNFMKKM 377 (523)
Q Consensus 369 ~A~~~~~~m 377 (523)
+|.+++++.
T Consensus 336 ~A~~~~~~l 344 (382)
T 2h6f_A 336 KALELCEIL 344 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888776
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=9.9e-08 Score=90.00 Aligned_cols=183 Identities=10% Similarity=-0.015 Sum_probs=101.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-------HHHHhhc----cCChHHHHHHHHHHHHhcCCCCceeHhHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------VYKACSE----LKDHRVGKDVYDYMISIKFEGNACVKRPVL 137 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 137 (523)
+..++..+-..|.+.|++++|+..|++..+.+ +-..+.. .++.++|.+.+.+..+.+ +...+..+-
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 55677777778888888888888888776654 3333444 555666666666555543 444555555
Q ss_pred HHHHh----cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh----cCChHHHHHHHhc
Q 035847 138 DMFIK----CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK----CRYLKVAHCKFSK 209 (523)
Q Consensus 138 ~~~~~----~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k----~g~~~~A~~vf~~ 209 (523)
..|.. .+++++|...|+++ .+. + +...+..+-..|.+ .++.++|...|+.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a------------------~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 139 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKA------------------CDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTK 139 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHH------------------HHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHH------------------HHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 55555 56666666665551 111 1 34455555555555 5566666555554
Q ss_pred CCC-CChhhHHHHHHhhhhcCCccccchhhc----cCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc----cCChhH
Q 035847 210 IKQ-KHLVSWNAMLAGYALGGFREEITGFTQ----YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ----VKGFKL 280 (523)
Q Consensus 210 m~~-~~~~t~~~li~~~~~~g~~~~i~~~~~----~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~----~g~~~~ 280 (523)
..+ .+..++..+-. .|.+ .+++++|+..|++..+.+ +...+..+-..+.. .++.++
T Consensus 140 a~~~~~~~a~~~lg~------------~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 140 ACDLNDGDGCTILGS------------LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHTTCHHHHHHHHH------------HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHhcCcHHHHHHHHH------------HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 332 23334444444 3333 555566666655555443 23344444444444 555555
Q ss_pred HHHHHHHHHHh
Q 035847 281 GKEIHGYVLRH 291 (523)
Q Consensus 281 a~~i~~~~~~~ 291 (523)
|.+.++...+.
T Consensus 205 A~~~~~~a~~~ 215 (273)
T 1ouv_A 205 ALARYSKACEL 215 (273)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 55555555543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-07 Score=89.29 Aligned_cols=217 Identities=10% Similarity=-0.042 Sum_probs=177.0
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh----cCCchHHHHHHHHh
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV----LGYYEEIVNLFYLL 96 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m 96 (523)
+..++..+-..+...+++++|...+....+.+ +..+|..+-..|.+ .+++++|+..|++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 68 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA 68 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH
Confidence 44566667777778899999999999988743 45678888888999 99999999999998
Q ss_pred hHcc-------HHHHhhc----cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHh----cCCHHHHHHHhhhcccccc
Q 035847 97 IDEG-------VYKACSE----LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK----CGRMEMASGEFEEKDFSNL 161 (523)
Q Consensus 97 ~~~g-------ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~~~ 161 (523)
.+.+ +-..+.. .++.++|.+.+....+.+ +...+..+-..|.+ .|++++|...|+++
T Consensus 69 ~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a----- 140 (273)
T 1ouv_A 69 CDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA----- 140 (273)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH-----
T ss_pred HHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH-----
Confidence 7776 5555666 899999999999999875 67788889999999 99999999999981
Q ss_pred CchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChhhHHHHHHhhhhcCCccccch
Q 035847 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK----CRYLKVAHCKFSKIKQ-KHLVSWNAMLAGYALGGFREEITG 236 (523)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k----~g~~~~A~~vf~~m~~-~~~~t~~~li~~~~~~g~~~~i~~ 236 (523)
.+. + +...+..+-..|.+ .++.++|...|+...+ .+..++..+-. .
T Consensus 141 -------------~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~------------~ 191 (273)
T 1ouv_A 141 -------------CDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGN------------M 191 (273)
T ss_dssp -------------HHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH------------H
T ss_pred -------------Hhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH------------H
Confidence 222 3 45677788888888 8999999999987654 45567777777 7
Q ss_pred hhc----cCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc----cCChhHHHHHHHHHHHhcC
Q 035847 237 FTQ----YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ----VKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 237 ~~~----~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~i~~~~~~~g~ 293 (523)
|.+ .+++++|++.|++..+.+. ...+..+-..+.+ .++.++|.+.++...+.|.
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 777 8999999999999988653 5566667777777 8999999999999988763
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.4e-08 Score=96.96 Aligned_cols=297 Identities=12% Similarity=0.065 Sum_probs=210.9
Q ss_pred CCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC--cchHHHHHHHHHhcCCchHHHHHHHHhh
Q 035847 20 ECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN--VFSWTSMMGMYNVLGYYEEIVNLFYLLI 97 (523)
Q Consensus 20 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~ 97 (523)
+....+...-..+...|+++.|...++...+.... .+. ..+|..+-..|...|++++|+..|++..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE------------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc------------cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34445556667778899999999999999887421 111 3578889999999999999999998765
Q ss_pred Hcc---------------HHHHhhccCChHHHHHHHHHHHHhcCC-CC----ceeHhHHHHHHHhcCC------------
Q 035847 98 DEG---------------VYKACSELKDHRVGKDVYDYMISIKFE-GN----ACVKRPVLDMFIKCGR------------ 145 (523)
Q Consensus 98 ~~g---------------ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~------------ 145 (523)
... +...+...|+++.|...+....+..-. ++ ..++..+-..|...|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 154 (406)
T 3sf4_A 75 TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhh
Confidence 431 556677889999999999888764211 12 4478888899999999
Q ss_pred --------HHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC----
Q 035847 146 --------MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---- 212 (523)
Q Consensus 146 --------~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---- 212 (523)
++.|...|++ +..+.. +. +..| ...++..+...|...|++++|...|++..+
T Consensus 155 ~~~~a~~~~~~A~~~~~~-----------al~~~~---~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 155 FPEEVRDALQAAVDFYEE-----------NLSLVT---AL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp CCHHHHHHHHHHHHHHHH-----------HHHHHH---HT-TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHH-----------HHHHHH---hc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 8888888877 111111 11 2222 345788899999999999999999987642
Q ss_pred -CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCCC-HHHHHHHHHHhhccCChhHHH
Q 035847 213 -KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQPN-TISLSGVLAACAQVKGFKLGK 282 (523)
Q Consensus 213 -~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~ 282 (523)
++ ..+|..+.. .|...|++++|...|++.... +-.+. ..++..+-..+...|++++|.
T Consensus 220 ~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGN------------AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp TTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCcHHHHHHHHHHHH------------HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 22 236777777 888999999999999987652 11111 467778888899999999999
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh---cCCccC-HhHHHHHH
Q 035847 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE---YNMEPA-MEQYCCMV 358 (523)
Q Consensus 283 ~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~---~g~~p~-~~ty~~li 358 (523)
+.+....+..-..+.. .....+|..+-..|...|+. ++|..+|++..+. .+-.|. ..++..+.
T Consensus 288 ~~~~~a~~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 354 (406)
T 3sf4_A 288 DYHLKHLAIAQELNDR-----------IGEGRACWSLGNAYTALGNH--DQAMHFAEKHLEISREVGDKSGELTARLNLS 354 (406)
T ss_dssp HHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc-----------HHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 9998887632111000 00135778889999999999 9999999886543 122222 45666677
Q ss_pred HHHHhhCCHH
Q 035847 359 DLLARAGQFD 368 (523)
Q Consensus 359 ~~~~~~g~~~ 368 (523)
..+...|+..
T Consensus 355 ~~~~~~g~~~ 364 (406)
T 3sf4_A 355 DLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHhhHhH
Confidence 7777766653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.95 E-value=9.7e-08 Score=92.07 Aligned_cols=223 Identities=10% Similarity=0.059 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh-------cCCchHHHHHHHHhhHccHHHHhhccCCh
Q 035847 39 ELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV-------LGYYEEIVNLFYLLIDEGVYKACSELKDH 111 (523)
Q Consensus 39 ~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~-------~g~~~~A~~l~~~m~~~gll~~~~~~~~~ 111 (523)
+.|..++++.++.. ..+...|..+...+.+ .|+++.+ .+..
T Consensus 33 ~~a~~~~~~al~~~--------------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~------------------~~~~ 80 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--------------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNA------------------KLFS 80 (308)
T ss_dssp HHHHHHHHHHHHHH--------------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHH------------------HHHH
T ss_pred HHHHHHHHHHHHHc--------------CCCHHHHHHHHHHHHHhchhhhhccchhhc------------------ccch
Confidence 56777888887653 2467788888877764 3554100 0011
Q ss_pred HHHHHHHHHHHHhcCCC-CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hh-HHH
Q 035847 112 RVGKDVYDYMISIKFEG-NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LL-VNN 188 (523)
Q Consensus 112 ~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~-~~~ 188 (523)
++|..++++.++. +.| +...|..+...+.+.|++++|..+|++ .-. +.|+ .. +|.
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------al~--~~p~~~~~~~~ 138 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNR-------------------LLA--IEDIDPTLVYI 138 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHT--SSSSCTHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHH-------------------HHh--ccccCccHHHH
Confidence 3444444444432 235 455899999999999999999999999 222 3443 33 899
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccch-hhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITG-FTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~-~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
.+...+.+.|++++|..+|++..+ | +...|..... . +...|++++|..+|++..+.. +-+...
T Consensus 139 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~------------~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 205 (308)
T 2ond_A 139 QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL------------MEYYCSKDKSVAFKIFELGLKKY-GDIPEY 205 (308)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH------------HHHHTSCCHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH------------HHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 999999999999999999998654 3 3334443322 2 223699999999999988742 225678
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhc-CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHH-IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
|..++..+.+.|+.+.|..+++..++.. ++|+. ....|..++..+.+.|+. ++|..+++++.+
T Consensus 206 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~--------------~~~l~~~~~~~~~~~g~~--~~a~~~~~~a~~ 269 (308)
T 2ond_A 206 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK--------------SGEIWARFLAFESNIGDL--ASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG--------------CHHHHHHHHHHHHHHSCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH--------------HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHH
Confidence 8888899999999999999999998853 34422 346789999999999999 999999999987
Q ss_pred h
Q 035847 344 E 344 (523)
Q Consensus 344 ~ 344 (523)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.6e-09 Score=98.72 Aligned_cols=254 Identities=13% Similarity=0.110 Sum_probs=164.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+..+|..+...|...|++++|+.+|++..+. ..............++..+...|...|++++
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 87 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALED------------------LEKTSGHDHPDVATMLNILALVYRDQNKYKD 87 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------HHHHHCSSSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHH
Confidence 3577888999999999999999999886652 1111100112235578888999999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C----Chhh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-------K----HLVS 217 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-------~----~~~t 217 (523)
|...|++ +..+....... .......++..+...|...|++++|...|++..+ + ...+
T Consensus 88 A~~~~~~-----------al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 88 AANLLND-----------ALAIREKTLGK-DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp HHHHHHH-----------HHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHH-----------HHHHHHHHhCC-CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 9999998 11221111111 1233467889999999999999999999987642 1 2245
Q ss_pred HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc------CCCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT------DMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 218 ~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
|+.+.. .|.+.|++++|++.|++.... +-.|+ ..++..+...+...|+.++|.+.+..+.+
T Consensus 156 ~~~la~------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 156 LNNLAL------------LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHH------------HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHH------------HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777 888999999999999998774 22343 45678888899999999999999999876
Q ss_pred hcCCchHHHHhHHHhhhCCCC-C------cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh
Q 035847 291 HHIQLSTGVGIALISIQGLGT-G------SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363 (523)
Q Consensus 291 ~g~~~~~~~~~~li~~y~~~p-~------~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 363 (523)
....... . ...+ + ...+..+...+...+.. .++...+...... -..+..++..+..+|.+
T Consensus 224 ~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~ 290 (311)
T 3nf1_A 224 RAHEREF---G------SVDDENKPIWMHAEEREECKGKQKDGTSF--GEYGGWYKACKVD--SPTVTTTLKNLGALYRR 290 (311)
T ss_dssp HHHHHHH---C------------CCHHHHHHHHHHC-------CCS--CCCC-----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC---C------CCCcchHHHHHHHHHHHHhcCchhhHHHH--HHHHHHHhhcCCC--CchHHHHHHHHHHHHHH
Confidence 3111000 0 0011 1 12223333344444555 5566666655532 23346788899999999
Q ss_pred hCCHHHHHHHHHhC
Q 035847 364 AGQFDDTLNFMKKM 377 (523)
Q Consensus 364 ~g~~~~A~~~~~~m 377 (523)
.|++++|.+++++.
T Consensus 291 ~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 291 QGKFEAAETLEEAA 304 (311)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998763
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-07 Score=93.25 Aligned_cols=219 Identities=11% Similarity=0.025 Sum_probs=173.5
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCC-chHHHHHHHHhhHcc-
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY-YEEIVNLFYLLIDEG- 100 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g- 100 (523)
..|..+-..+.+.|+++.|...+...++.. ..+..+|+.+-..+.+.|+ +++|+..|++.....
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--------------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--------------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--------------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC
Confidence 456667777788899999999999999875 2467899999999999997 999999999988765
Q ss_pred --------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhh
Q 035847 101 --------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172 (523)
Q Consensus 101 --------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~ 172 (523)
+-.++...|++++|...++.+++.. +-+..+|..+-.++.+.|++++|+..|++
T Consensus 164 ~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~----------------- 225 (382)
T 2h6f_A 164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQ----------------- 225 (382)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHH-----------------
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHH-----------------
Confidence 5566778899999999999999874 44778999999999999999999999999
Q ss_pred hhhhcCCCCCchhHHHHHHHHHHh-cCChHHH-----HHHHhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhccC--
Q 035847 173 HHLKKDDLESDLLVNNSLMDFYAK-CRYLKVA-----HCKFSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQYG-- 241 (523)
Q Consensus 173 ~~~~~~g~~~d~~~~~~li~~~~k-~g~~~~A-----~~vf~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g-- 241 (523)
+++. -.-+...|+.+-..|.+ .|..++| ...|+... .| +...|+.+-. .+.+.|
T Consensus 226 -al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~------------ll~~~g~~ 290 (382)
T 2h6f_A 226 -LLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG------------ILQDRGLS 290 (382)
T ss_dssp -HHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH------------HHTTTCGG
T ss_pred -HHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH------------HHHccCcc
Confidence 1322 22357789999999999 6665777 36666543 34 5668988888 777777
Q ss_pred CchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC---------ChhHHHHHHHHH-HH
Q 035847 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK---------GFKLGKEIHGYV-LR 290 (523)
Q Consensus 242 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g---------~~~~a~~i~~~~-~~ 290 (523)
+.++|++.+.++ + .-..+...+..+...+.+.| ..++|.++++.+ .+
T Consensus 291 ~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 291 KYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp GCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 689999999988 2 23335677888888888764 258899998887 44
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.4e-08 Score=94.42 Aligned_cols=253 Identities=11% Similarity=0.042 Sum_probs=183.8
Q ss_pred chhHHHHHHHHhhhCCCCCC-----cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDEC-----TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSM 76 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~l 76 (523)
.+++|+..|++..+.. |+ ...+..+-..+...|+++.|...+.......-... .+.....+|..+
T Consensus 20 ~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~l 89 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--------DQLGEAKASGNL 89 (338)
T ss_dssp CHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--------ccHHHHHHHHHH
Confidence 4689999999988863 43 35677888888899999999999988765311000 001235678889
Q ss_pred HHHHHhcCCchHHHHHHHHhhHcc---------------HHHHhhccCC--------------------hHHHHHHHHHH
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDEG---------------VYKACSELKD--------------------HRVGKDVYDYM 121 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~g---------------ll~~~~~~~~--------------------~~~a~~~~~~m 121 (523)
-..|...|++++|+..|.+..... +...+...|+ ++.|.+.+...
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999998865431 5556667788 88888888876
Q ss_pred HHh----cCCC-CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC-CCchhHHHHHHHHHH
Q 035847 122 ISI----KFEG-NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL-ESDLLVNNSLMDFYA 195 (523)
Q Consensus 122 ~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~d~~~~~~li~~~~ 195 (523)
.+. +-.| ...++..+...|...|++++|...|+++ .++.. +. +. .....++..+...|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-----------~~~~~---~~-~~~~~~~~~~~~l~~~~~ 234 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR-----------LLIAK---EF-GDKAAERRAYSNLGNAYI 234 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------HHHHH---HH-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----------HHHHH---hc-CChHHHHHHHHHHHHHHH
Confidence 543 1111 2347888889999999999999999881 11111 11 11 112447888899999
Q ss_pred hcCChHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCC-C
Q 035847 196 KCRYLKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQP-N 261 (523)
Q Consensus 196 k~g~~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p-~ 261 (523)
+.|+.++|...+++..+ ++ ..++..+.. .|...|++++|...|++..+. +-.+ .
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 302 (338)
T 3ro2_A 235 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN------------TYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH------------HHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999999987642 22 346677777 888999999999999987653 1111 1
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 262 ~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
..++..+-..+...|+.++|.+.++...+.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 446777888899999999999999988763
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-07 Score=92.94 Aligned_cols=230 Identities=10% Similarity=0.019 Sum_probs=166.6
Q ss_pred HhhccCChHHHHHHHHHHHHhcC-CC----CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 104 ACSELKDHRVGKDVYDYMISIKF-EG----NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
.+...|+++.|.+.+....+.-- .+ ...++..+-..|...|+++.|...|++ +.+++.. ..
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~-----------al~~~~~---~~ 177 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ-----------AYEIYKE---HE 177 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHT---CS
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHHHHh---Cc
Confidence 35578999999999999886421 12 245788899999999999999999998 2222211 10
Q ss_pred CCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHH
Q 035847 179 DLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----KHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALE 248 (523)
Q Consensus 179 g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~ 248 (523)
...+ ...+++.+-..|...|++++|...|+...+ ++. .+|+.+-. .|...|++++|++
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~------------~y~~~g~~~~A~~ 245 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL------------CKNSQSQYEDAIP 245 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------HHHHCCCHHHHHH
Confidence 1112 355788889999999999999999887542 222 36777777 8889999999999
Q ss_pred HHHHHHhc----CC-CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHH
Q 035847 249 FFSRMIQT----DM-QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323 (523)
Q Consensus 249 lf~~M~~~----g~-~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~ 323 (523)
.|++..+. +. .....++..+-..+.+.|+.++|.+.++...+..-..+. ......++.+-..|
T Consensus 246 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~l~~~~ 313 (383)
T 3ulq_A 246 YFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD------------VIYLSEFEFLKSLY 313 (383)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHH
Confidence 99988762 33 334567888888999999999999999888763211000 00112356677778
Q ss_pred HhcCC---CchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 324 GRCGA---IQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 324 ~~~g~---~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
...|+ . ++|..+++.. +..|+ ...+..+-..|...|++++|...+++.
T Consensus 314 ~~~~~~~~~--~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 314 LSGPDEEAI--QGFFDFLESK----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp TSSCCHHHH--HHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCcHHHH--HHHHHHHHHC----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888 6 7888888766 33344 567778889999999999999998874
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.79 E-value=9.5e-08 Score=83.50 Aligned_cols=163 Identities=12% Similarity=0.042 Sum_probs=130.7
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
...|..+...+.+.|++++|+..|+++.... +.+..++..+...|.+.|++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~A 61 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--------------------------AFDVDVALHLGIAYVKTGAVDRG 61 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--------------------------SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------ccChHHHHHHHHHHHHcCCHHHH
Confidence 3557777788888899999998888776543 44667788889999999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhh
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYA 226 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~ 226 (523)
...|++ ... -...+..++..+...|.+.|++++|...|+...+ .+...|..+..
T Consensus 62 ~~~~~~-------------------~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~--- 118 (186)
T 3as5_A 62 TELLER-------------------SLA-DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV--- 118 (186)
T ss_dssp HHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH---
T ss_pred HHHHHH-------------------HHh-cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH---
Confidence 999988 322 1234577888889999999999999999987642 45667888878
Q ss_pred hcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 227 ~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
.+.+.|++++|.+.|++..+.. +.+..++..+...+...|+.++|.+.++...+.
T Consensus 119 ---------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 119 ---------ALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp ---------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8889999999999999988753 335678888888999999999999999888764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-07 Score=82.54 Aligned_cols=164 Identities=7% Similarity=-0.013 Sum_probs=130.1
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+=..|.+.|++++|++.|++..+.. +-+..++..+...|.+.|++++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~~~~~~ 57 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--------------------------PNNVETLLKLGKTYMDIGLPND 57 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHCCCHHH
Confidence 56678888888888899999998888876643 3467788888899999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGY 225 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~ 225 (523)
|...+.+ ... ....+..++..+-..+.+.++.+.|...+....+ .+...|..+-.
T Consensus 58 a~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~-- 115 (184)
T 3vtx_A 58 AIESLKK-------------------FVV-LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL-- 115 (184)
T ss_dssp HHHHHHH-------------------HHH-HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH--
T ss_pred HHHHHHH-------------------HHh-cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH--
Confidence 9999988 332 2233566777778888899999999998887542 45667887877
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
.|.+.|++++|++.|++..+.. +-+..+|..+-.++.+.|+.++|.+.++..++.
T Consensus 116 ----------~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 116 ----------VYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp ----------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----------HHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 8889999999999999988753 225677888888999999999999999988763
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-07 Score=83.28 Aligned_cols=170 Identities=10% Similarity=0.050 Sum_probs=135.3
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...|..+-..+...|+++.|...++...+.. +.+..+|..+-..|.+.|++++|+..+.......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--------------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55678888899999999999999999998874 2467889999999999999999999998876643
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+.+..++..+-..+...++++.|...+.+ ... -.
T Consensus 70 --------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-------------------a~~-~~ 103 (184)
T 3vtx_A 70 --------------------------TTSAEAYYILGSANFMIDEKQAAIDALQR-------------------AIA-LN 103 (184)
T ss_dssp --------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HC
T ss_pred --------------------------chhHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHH-hC
Confidence 34556677777888888999999998888 222 12
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
+.+..++..+-..|.+.|++++|...|+...+ .+..+|..+-. .|.+.|++++|++.|++..+
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~------------~~~~~g~~~~A~~~~~~al~-- 169 (184)
T 3vtx_A 104 TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL------------AYEGKGLRDEAVKYFKKALE-- 169 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH--
T ss_pred ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHH------------HHHHCCCHHHHHHHHHHHHh--
Confidence 33567788888899999999999999887653 35567888888 88899999999999998876
Q ss_pred CCCCHHH
Q 035847 258 MQPNTIS 264 (523)
Q Consensus 258 ~~p~~~t 264 (523)
+.|+...
T Consensus 170 ~~p~~a~ 176 (184)
T 3vtx_A 170 KEEKKAK 176 (184)
T ss_dssp TTHHHHH
T ss_pred CCccCHH
Confidence 3455433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.7e-08 Score=97.92 Aligned_cols=271 Identities=13% Similarity=0.055 Sum_probs=192.0
Q ss_pred chhHHHHHHHHhhhCCCCCCc-----chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCC--CCCcchHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECT-----VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMP--ERNVFSWT 74 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~--~~~~~~~~ 74 (523)
.+++|+..|++.... .|+. ..|..+-..+...|+++.|...+....+..- ... .....+|.
T Consensus 63 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 63 DCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK----------SMNDRLGEAKSSG 130 (411)
T ss_dssp CHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------HccCchHHHHHHH
Confidence 467899999998876 3432 4677788888899999999999988875411 000 12457788
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCC---------
Q 035847 75 SMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR--------- 145 (523)
Q Consensus 75 ~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------- 145 (523)
.+-..|...|++++|+..|++..... ...++. .....++..+-..|...|+
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 190 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLA-----RQLGDR---------------LSEGRALYNLGNVYHAKGKHLGQRNPGK 190 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHTCH---------------HHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH-----HHhhch---------------HHHHHHHHHHHHHHHHcCcccccccchh
Confidence 89999999999999999998865421 111110 1124467788889999999
Q ss_pred --------HHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC----
Q 035847 146 --------MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---- 212 (523)
Q Consensus 146 --------~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---- 212 (523)
++.|...|++ +.++... . +..+ ...++..+-..|...|++++|...|++..+
T Consensus 191 ~~~~a~~~~~~A~~~~~~-----------al~~~~~---~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 191 FGDDVKEALTRAVEFYQE-----------NLKLMRD---L-GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp CCHHHHHHHHHHHHHHHH-----------HHHHHHH---H-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHH-----------HHHHHHH---c-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 8888888777 1111111 1 2112 345788899999999999999999987643
Q ss_pred -CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC----C-CCHHHHHHHHHHhhccCChhHHH
Q 035847 213 -KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM----Q-PNTISLSGVLAACAQVKGFKLGK 282 (523)
Q Consensus 213 -~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~----~-p~~~t~~~ll~a~~~~g~~~~a~ 282 (523)
++ ..+|..+.. .|...|++++|.+.|++...... . ....++..+-..+...|+.++|.
T Consensus 256 ~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (411)
T 4a1s_A 256 FGDRAAERRANSNLGN------------SHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI 323 (411)
T ss_dssp HTCHHHHHHHHHHHHH------------HHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCcHHHHHHHHHHHH------------HHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 22 126777777 88899999999999998765311 1 12467778888899999999999
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 283 ~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
+.++...+..-..... .....+|..+...|...|+. ++|..+|++..+.
T Consensus 324 ~~~~~al~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 372 (411)
T 4a1s_A 324 EYHNRHLAIAQELGDR-----------IGEARACWSLGNAHSAIGGH--ERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHTCH-----------HHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCh-----------HHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9998887632110000 01234678889999999999 9999999988764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-08 Score=95.04 Aligned_cols=246 Identities=11% Similarity=-0.012 Sum_probs=162.3
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc-
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE- 99 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~- 99 (523)
+..++..+...+...|+++.|..++..+.+..-.. ...-......+|..+...|...|++++|+..|++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT------SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34567788888899999999999999988631000 00000224578899999999999999999999887653
Q ss_pred -----c-----------HHHHhhccCChHHHHHHHHHHHHh------cCCC-CceeHhHHHHHHHhcCCHHHHHHHhhhc
Q 035847 100 -----G-----------VYKACSELKDHRVGKDVYDYMISI------KFEG-NACVKRPVLDMFIKCGRMEMASGEFEEK 156 (523)
Q Consensus 100 -----g-----------ll~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~ 156 (523)
+ +...+...|+++.|.+.+....+. +-.| ...++..+...|.+.|++++|...|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 667778899999999999998875 2222 3557888899999999999999999981
Q ss_pred cccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-----------CChhhHHHHHHh
Q 035847 157 DFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----------KHLVSWNAMLAG 224 (523)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----------~~~~t~~~li~~ 224 (523)
.++..... . +..| ...++..+...|.+.|+.++|...|++..+ +...........
T Consensus 180 -----------~~~~~~~~-~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 246 (311)
T 3nf1_A 180 -----------LEIYQTKL-G-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246 (311)
T ss_dssp -----------HHHHHHTS-C-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred -----------HHHHHHHh-C-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 11111100 0 1123 356788999999999999999999987652 111111111111
Q ss_pred hhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 225 ~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
+...+. .+...+.+.+|...++...... ..+..++..+..++.+.|+.++|.+.++...+.
T Consensus 247 ~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 247 REECKG-----KQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHC------------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcC-----chhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 111111 5556677777777777766532 234577888889999999999999999988763
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.76 E-value=9e-07 Score=77.12 Aligned_cols=160 Identities=13% Similarity=0.031 Sum_probs=135.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p 260 (523)
...+..+...|.+.|++++|...|+.+.+ .+...|..+.. .+...|++++|.+.|++..+.. +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~~~~~~-~~ 74 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGI------------AYVKTGAVDRGTELLERSLADA-PD 74 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHH------------HHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 45677888899999999999999999875 35667888888 8889999999999999998753 33
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHH
Q 035847 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340 (523)
Q Consensus 261 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~ 340 (523)
+...+..+...+...|++++|.+.++.+.+.. +.+...|..+...|...|+. ++|..+|+.
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~ 135 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-----------------PINFNVRFRLGVALDNLGRF--DEAIDSFKI 135 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCH--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------cHhHHHHHHHHHHHHHcCcH--HHHHHHHHH
Confidence 57788888889999999999999999988752 23456788889999999999 999999999
Q ss_pred hHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 341 MKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 341 m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
..+. . ..+...+..+...+...|++++|.+.+++.
T Consensus 136 ~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 136 ALGL-R-PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhc-C-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9875 2 345788999999999999999999998874
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=97.06 Aligned_cols=190 Identities=10% Similarity=-0.047 Sum_probs=131.9
Q ss_pred cchHHHHHHhccCCCCh-HHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 22 TVTYALIFQRCPKLNNL-ELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
...+..+-.++...|++ ++|...+....+.. ..+...|..+-..|.+.|++++|++.|++
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~----- 162 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--------------PELVEAWNQLGEVYWKKGDVTSAHTCFSG----- 162 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----
Confidence 33444444455555555 55555555554432 12344555555555555555555555554
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhc---------CCHHHHHHHhhhccccccCchhhHhhHh
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC---------GRMEMASGEFEEKDFSNLSLLKHGKEIH 171 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~f~~~~~~~~~~~~~~~~~~ 171 (523)
.++ +.|+..++..+-..|... |++++|...|+++
T Consensus 163 --------------------al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a--------------- 205 (474)
T 4abn_A 163 --------------------ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA--------------- 205 (474)
T ss_dssp --------------------HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH---------------
T ss_pred --------------------HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH---------------
Confidence 443 357778888899999999 9999999999981
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHhc--------CChHHHHHHHhcCCC--C----ChhhHHHHHHhhhhcCCccccchh
Q 035847 172 PHHLKKDDLESDLLVNNSLMDFYAKC--------RYLKVAHCKFSKIKQ--K----HLVSWNAMLAGYALGGFREEITGF 237 (523)
Q Consensus 172 ~~~~~~~g~~~d~~~~~~li~~~~k~--------g~~~~A~~vf~~m~~--~----~~~t~~~li~~~~~~g~~~~i~~~ 237 (523)
++. -..+...|..+-..|.+. |++++|...|+...+ | +...|..+-. .|
T Consensus 206 ---l~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~------------~~ 268 (474)
T 4abn_A 206 ---VQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRAT------------LH 268 (474)
T ss_dssp ---HHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHH------------HH
T ss_pred ---HHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHH------------HH
Confidence 222 223577889999999998 999999999988653 4 6678888888 88
Q ss_pred hccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHH
Q 035847 238 TQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHG 286 (523)
Q Consensus 238 ~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~ 286 (523)
.+.|++++|++.|++..+. .| +...+..+-.++...|+.++|.+.+.
T Consensus 269 ~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 269 KYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998874 34 45567777777888887777776543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-07 Score=95.45 Aligned_cols=214 Identities=14% Similarity=-0.040 Sum_probs=169.0
Q ss_pred hHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCH-HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHH
Q 035847 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM-EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNS 189 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~ 189 (523)
++.+.+.++...... ..+...+..+-..|...|++ ++|...|+++ ++. -..+...|..
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~a------------------l~~--~p~~~~a~~~ 142 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKA------------------VKL--EPELVEAWNQ 142 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHH------------------HHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHH------------------Hhh--CCCCHHHHHH
Confidence 344455555444321 34677888888999999999 9999999981 222 1234778999
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhcc---------CCchHHHHHHHHHHhcCC
Q 035847 190 LMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQY---------GDGETALEFFSRMIQTDM 258 (523)
Q Consensus 190 li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~---------g~~~~A~~lf~~M~~~g~ 258 (523)
+-..|.+.|++++|...|+... .|+...|..+-. .|.+. |++++|++.|++..+..
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~------------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~- 209 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSM------------VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD- 209 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHH------------HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHH------------HHHHhccCChhhhhhhHHHHHHHHHHHHHhC-
Confidence 9999999999999999998865 477778888888 77788 99999999999998853
Q ss_pred CCCHHHHHHHHHHhhcc--------CChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCc
Q 035847 259 QPNTISLSGVLAACAQV--------KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330 (523)
Q Consensus 259 ~p~~~t~~~ll~a~~~~--------g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~ 330 (523)
+-+...|..+-.++... |++++|.+.++...+.. |.. ..+...|..+-..|...|+.
T Consensus 210 p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~------------~~~~~~~~~lg~~~~~~g~~- 274 (474)
T 4abn_A 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD--RKA------------SSNPDLHLNRATLHKYEESY- 274 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC--GGG------------GGCHHHHHHHHHHHHHTTCH-
T ss_pred CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC--CCc------------ccCHHHHHHHHHHHHHcCCH-
Confidence 22567888888888888 99999999999998752 100 02567899999999999999
Q ss_pred hHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 331 KNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 331 ~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
++|...|++..+. .|+ ...+..+..++...|++++|.+.+.++
T Consensus 275 -~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 275 -GEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp -HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999998865 455 567888999999999999999877665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.6e-07 Score=92.53 Aligned_cols=296 Identities=8% Similarity=-0.032 Sum_probs=173.2
Q ss_pred hhHHHHHHHHhhhC-----C-CCCC-cchHHHHHHhcc--CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchH
Q 035847 3 IKNVTLLLQSMDLT-----N-PDEC-TVTYALIFQRCP--KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSW 73 (523)
Q Consensus 3 ~~~A~~l~~~m~~~-----g-~~p~-~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~ 73 (523)
+++|...|++...- + ..++ ..++...-.++. ..+++++|...|+...+... .+...+
T Consensus 110 ~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p--------------~~~~~~ 175 (472)
T 4g1t_A 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP--------------KNPEFT 175 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST--------------TCHHHH
T ss_pred hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC--------------CCHHHH
Confidence 46677666655431 1 1122 234443333332 34579999999999887642 244455
Q ss_pred HHHHHH---HHhcCCchHHHHHHHHhhHcc---------HHHHhh----ccCChHHHHHHHHHHHHhcCCCCceeHhHHH
Q 035847 74 TSMMGM---YNVLGYYEEIVNLFYLLIDEG---------VYKACS----ELKDHRVGKDVYDYMISIKFEGNACVKRPVL 137 (523)
Q Consensus 74 ~~li~~---~~~~g~~~~A~~l~~~m~~~g---------ll~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 137 (523)
..+... +...++.++|++.|++..+.. +...+. ..++.++|.+.++...... +.+..++..+-
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg 254 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHH
Confidence 444443 455688889999998766543 112222 3467889999999988764 45677889999
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh-------------------cC
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK-------------------CR 198 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k-------------------~g 198 (523)
..|.+.|++++|...|+++ ++. .+-+..++..+-..|.. .+
T Consensus 255 ~~~~~~~~~~~A~~~~~~a------------------l~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~ 314 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKA------------------LEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLE 314 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------------HHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHH------------------HHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999982 111 11234445444444432 12
Q ss_pred ChHHHHHHHhcCC---CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHH--HHHHHHH-Hh
Q 035847 199 YLKVAHCKFSKIK---QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI--SLSGVLA-AC 272 (523)
Q Consensus 199 ~~~~A~~vf~~m~---~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~--t~~~ll~-a~ 272 (523)
..+.|...|+... ..+..+|..+-. .|.+.|++++|++.|++..+....|... .+..+.. ..
T Consensus 315 ~~~~A~~~~~~a~~~~~~~~~~~~~lg~------------~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 315 LIGHAVAHLKKADEANDNLFRVCSILAS------------LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCHHHHHH------------HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCchhhhhhhHHH------------HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 3456666666543 235567888888 8899999999999999988765443321 1222221 23
Q ss_pred hccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHh
Q 035847 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352 (523)
Q Consensus 273 ~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ 352 (523)
...|+.++|.+.+...++.. |+...+... . ..+..+++...+. -+.+..
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~------------------~~~~~~~~~---------~--~~l~~~~~~~l~~--~p~~~~ 431 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKIN------------------QKSREKEKM---------K--DKLQKIAKMRLSK--NGADSE 431 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSC------------------CCCHHHHHH---------H--HHHHHHHHHHHHH--CC-CTT
T ss_pred HHCCCHHHHHHHHHHHHhcC------------------cccHHHHHH---------H--HHHHHHHHHHHHh--CCCCHH
Confidence 46789999999998887632 222111111 1 3334444444332 133456
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 353 QYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 353 ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
+|..+-..|...|++++|.+.+++
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777777777777777766
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-07 Score=86.60 Aligned_cols=198 Identities=12% Similarity=0.047 Sum_probs=142.6
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--------
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-------- 212 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-------- 212 (523)
...|+++.|...|++ +.++....... .......++..+-..|...|++++|...|++..+
T Consensus 12 ~~~~~~~~A~~~~~~-----------al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQ-----------ALEDLEKTSGH-DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79 (283)
T ss_dssp -CCSCSSSHHHHHHH-----------HHHHHHHHHCS-SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHH-----------HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC
Confidence 456778888888877 33333332222 2233567889999999999999999999987541
Q ss_pred --C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc------CCCC-CHHHHHHHHHHhhccCChhHHH
Q 035847 213 --K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT------DMQP-NTISLSGVLAACAQVKGFKLGK 282 (523)
Q Consensus 213 --~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~ 282 (523)
| ...+|+.+-. .|...|++++|++.|++.... .-.| ...++..+-..+...|++++|.
T Consensus 80 ~~~~~~~~~~~l~~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 80 DHPAVAATLNNLAV------------LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp TCHHHHHHHHHHHH------------HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cchHHHHHHHHHHH------------HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 2346777777 888999999999999998764 1123 3567888888999999999999
Q ss_pred HHHHHHHHhc---CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc-----C--------
Q 035847 283 EIHGYVLRHH---IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY-----N-------- 346 (523)
Q Consensus 283 ~i~~~~~~~g---~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~-----g-------- 346 (523)
+.+....+.- ..++. .....++..+...|...|+. ++|..+|++..+.. +
T Consensus 148 ~~~~~al~~~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDD------------PNVAKTKNNLASCYLKQGKY--QDAETLYKEILTRAHEKEFGSVNGDNKP 213 (283)
T ss_dssp HHHHHHHHHHHHHSCTTC------------HHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHSSSCCSSCCC
T ss_pred HHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCcchhHHH
Confidence 9999987741 00000 01345788899999999999 99999998887530 0
Q ss_pred ---------------------------------CccC-HhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 347 ---------------------------------MEPA-MEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 347 ---------------------------------~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
..|+ ..++..+...|.+.|++++|..++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 214 IWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1122 45677788888888999998888876
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4.2e-07 Score=74.55 Aligned_cols=127 Identities=15% Similarity=0.221 Sum_probs=100.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHH
Q 035847 72 SWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG 151 (523)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 151 (523)
+|..+...+.+.|++++|+.+|+++...+ +.+..++..+...|...|++++|..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~A~~ 56 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------PRSAEAWYNLGNAYYKQGDYDEAIE 56 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------------------------CcchhHHHHHHHHHHHhcCHHHHHH
Confidence 46677777777788888888877765532 3456778888899999999999999
Q ss_pred HhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhc
Q 035847 152 EFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALG 228 (523)
Q Consensus 152 ~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~ 228 (523)
.|++ ... ....+..++..+...|.+.|++++|...|+.+.+ .+..+|..+..
T Consensus 57 ~~~~-------------------~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~----- 111 (136)
T 2fo7_A 57 YYQK-------------------ALE-LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN----- 111 (136)
T ss_dssp HHHH-------------------HHH-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-----
T ss_pred HHHH-------------------HHH-HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH-----
Confidence 9998 332 1234567888899999999999999999987653 35677888888
Q ss_pred CCccccchhhccCCchHHHHHHHHHHhc
Q 035847 229 GFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 229 g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
.+.+.|++++|.+.|+++...
T Consensus 112 -------~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 112 -------AYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp -------HHHTTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHccHHHHHHHHHHHHcc
Confidence 888999999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-05 Score=79.66 Aligned_cols=221 Identities=9% Similarity=0.034 Sum_probs=144.5
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCc----chHHHHHHHHHhcCCchHHHHHHHHhhHc----c--
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNV----FSWTSMMGMYNVLGYYEEIVNLFYLLIDE----G-- 100 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-- 100 (523)
.+...|+++.|...+.......- ..+. .+++.+-..|...|++++|.+.+++.... |
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~-------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELP-------------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCC-------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC-------------CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 44568999999999988776431 1122 35667777888899999999999886542 1
Q ss_pred ---------HHHHhhccCChHHHHHHHHHHHHhc----CC--C-CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCch
Q 035847 101 ---------VYKACSELKDHRVGKDVYDYMISIK----FE--G-NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL 164 (523)
Q Consensus 101 ---------ll~~~~~~~~~~~a~~~~~~m~~~g----~~--p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~ 164 (523)
+-..+...|+++.|.+.++...+.. .. | ...++..+-..|...|++++|...++++
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------- 161 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG-------- 161 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--------
Confidence 4455677899999999998887643 11 2 2345666778899999999999999981
Q ss_pred hhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCh-hhHHHH---HHhhhhcCCccccch
Q 035847 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK----QKHL-VSWNAM---LAGYALGGFREEITG 236 (523)
Q Consensus 165 ~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~----~~~~-~t~~~l---i~~~~~~g~~~~i~~ 236 (523)
..+ ....+......++..+-..+...|++++|...+++.. .++. ..|... ..+. .
T Consensus 162 ---l~~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~----------~ 224 (373)
T 1hz4_A 162 ---IEV----LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI----------Y 224 (373)
T ss_dssp ---HHH----TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH----------H
T ss_pred ---HHH----hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH----------H
Confidence 000 0110211134567888889999999999999988653 2222 233322 2200 4
Q ss_pred hhccCCchHHHHHHHHHHhcCCCCC---HHHHHHHHHHhhccCChhHHHHHHHHHH
Q 035847 237 FTQYGDGETALEFFSRMIQTDMQPN---TISLSGVLAACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 237 ~~~~g~~~~A~~lf~~M~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~i~~~~~ 289 (523)
+...|++++|...+++.......++ ...+..+...+...|+.++|...++...
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6688999999999988765332111 2234444455555666666666555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.8e-06 Score=82.49 Aligned_cols=306 Identities=12% Similarity=0.046 Sum_probs=198.0
Q ss_pred CCCCcchHHHHHHhc--cCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCC-CCCcchHHHHHHHH--HhcCCchHHH--
Q 035847 18 PDECTVTYALIFQRC--PKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMP-ERNVFSWTSMMGMY--NVLGYYEEIV-- 90 (523)
Q Consensus 18 ~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~-~~~~~~~~~li~~~--~~~g~~~~A~-- 90 (523)
+.|+...=+.|-..+ .+.++++.|..+.+.+.+.. +.|. ..++..|-.|+..- .-.+....+.
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~----------~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~ 75 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDI----------QQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTY 75 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHG----------GGBCCCHHHHHHHHHHHHHHHHHHHTCCC----
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH----------HHhcccHHHHHHHHHHHHHHHHHHhhcCccccc
Confidence 344554445555555 57889999999999987642 1221 12233232222210 0011222222
Q ss_pred -------HHHHHhhHcc--------------HHHHhhccCChHHHHHHHHHHHHhcC-CCC----ceeHhHHHHHHHhcC
Q 035847 91 -------NLFYLLIDEG--------------VYKACSELKDHRVGKDVYDYMISIKF-EGN----ACVKRPVLDMFIKCG 144 (523)
Q Consensus 91 -------~l~~~m~~~g--------------ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g 144 (523)
+.++.+.... .-..+...|+++.|...+....+..- .+| ..++..+-..|...|
T Consensus 76 ~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~ 155 (378)
T 3q15_A 76 GNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155 (378)
T ss_dssp ----CHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC
Confidence 4444433211 12234578999999999998876521 122 457788889999999
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCh---
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----KHL--- 215 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----~~~--- 215 (523)
+++.|...+++ +.+++. +..+..+ ...+++.+-..|...|++++|...|+...+ ++.
T Consensus 156 ~~~~A~~~~~~-----------al~~~~---~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 156 QTHVSMYHILQ-----------ALDIYQ---NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp CHHHHHHHHHH-----------HHHHHH---TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHH-----------HHHHHH---hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999988 222221 1101122 356788899999999999999998876542 222
Q ss_pred -hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 216 -VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 216 -~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.+++.+-. .|...|++++|++.|++.... +-+....++..+-..+.+.|+.++|...++...+
T Consensus 222 ~~~~~~lg~------------~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 222 AISLLNIAN------------SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35666766 888999999999999988761 2222367788888899999999999999999887
Q ss_pred hcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCC---CchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCC
Q 035847 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGA---IQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQ 366 (523)
Q Consensus 291 ~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~---~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~ 366 (523)
..-..+. ......++.+-..|...|+ . .+|..+++.. +..|+ ...+..+-..|...|+
T Consensus 290 ~~~~~~~------------~~~~~~~~~l~~ly~~~~~~~~~--~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 290 HITARSH------------KFYKELFLFLQAVYKETVDERKI--HDLLSYFEKK----NLHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp HCCTTCC------------SCHHHHHHHHHHHHSSSCCHHHH--HHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCC------------HHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCC
Confidence 4322110 0112235556666667777 6 7888888763 33444 4567788889999999
Q ss_pred HHHHHHHHHhC
Q 035847 367 FDDTLNFMKKM 377 (523)
Q Consensus 367 ~~~A~~~~~~m 377 (523)
+++|...+++.
T Consensus 352 ~~~A~~~~~~a 362 (378)
T 3q15_A 352 FEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998874
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.2e-05 Score=77.25 Aligned_cols=251 Identities=8% Similarity=-0.018 Sum_probs=169.9
Q ss_pred hhHHHHHHHHhhhCCCCCCcc----hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCC--CcchHHHH
Q 035847 3 IKNVTLLLQSMDLTNPDECTV----TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPER--NVFSWTSM 76 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~--~~~~~~~l 76 (523)
+++|+..+++........+.. +++.+-..+...|+++.|...+.+.....-. ...+ ...+++.+
T Consensus 30 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 30 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ----------HDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh----------cCcHHHHHHHHHHH
Confidence 578888888876643222222 3455556677889999999999887753210 0011 12346677
Q ss_pred HHHHHhcCCchHHHHHHHHhhHc----------c-------HHHHhhccCChHHHHHHHHHHHHhcCCC----CceeHhH
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDE----------G-------VYKACSELKDHRVGKDVYDYMISIKFEG----NACVKRP 135 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~----------g-------ll~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ 135 (523)
-..+...|++++|+..+++.... + +-..+...|++++|.+.+.......-.. ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 78888999999999999876542 1 4455678899999999999988654221 1245777
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH--HHHHHHHHhcCChHHHHHHHhcCCCC
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN--NSLMDFYAKCRYLKVAHCKFSKIKQK 213 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~--~~li~~~~k~g~~~~A~~vf~~m~~~ 213 (523)
+-..+...|++++|...++++ ..+ ....+..+..... ...+..+...|+.++|...++...++
T Consensus 180 la~~~~~~g~~~~A~~~l~~a-----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRL-----------ENL----LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH-----------HHH----HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHH-----------HHH----HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 888899999999999999981 111 0111221111111 13445578999999999999988653
Q ss_pred Ch-------hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCCCHH-HHHHHHHHhhccCChhHH
Q 035847 214 HL-------VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQPNTI-SLSGVLAACAQVKGFKLG 281 (523)
Q Consensus 214 ~~-------~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p~~~-t~~~ll~a~~~~g~~~~a 281 (523)
+. ..+..+.. .+...|++++|.+.+++.... |..++.. ++..+-.++...|+.++|
T Consensus 245 ~~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIAR------------AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp CCTTCGGGHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcchhhHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 21 23555656 788899999999999987652 3222332 555666778889999999
Q ss_pred HHHHHHHHH
Q 035847 282 KEIHGYVLR 290 (523)
Q Consensus 282 ~~i~~~~~~ 290 (523)
...+.....
T Consensus 313 ~~~l~~al~ 321 (373)
T 1hz4_A 313 QRVLLDALK 321 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.52 E-value=3e-06 Score=84.10 Aligned_cols=280 Identities=9% Similarity=-0.062 Sum_probs=182.2
Q ss_pred HHhcCCchHHHHHHHHhhHcc--------HH------H--HhhccCChHHHH-----------HHHHHHHHhcCCCC---
Q 035847 80 YNVLGYYEEIVNLFYLLIDEG--------VY------K--ACSELKDHRVGK-----------DVYDYMISIKFEGN--- 129 (523)
Q Consensus 80 ~~~~g~~~~A~~l~~~m~~~g--------ll------~--~~~~~~~~~~a~-----------~~~~~m~~~g~~p~--- 129 (523)
+.+.+++++|..++++..+.- ++ . .....++++.+. +.++.+....-..+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 345789999999998875432 11 1 111123333444 56665543211111
Q ss_pred -ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHH
Q 035847 130 -ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKF 207 (523)
Q Consensus 130 -~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf 207 (523)
...+-..-..+...|++++|...|+++ .++ .+..+-.+ ...++..+-..|...|+.++|...+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a-----------l~~----~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~ 166 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKA-----------ESK----LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HTT----GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHH----HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 011112445677889999999999981 111 01101122 3568888999999999999998888
Q ss_pred hcCCC-----CC-----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCC-CHHHHHHHHHHh
Q 035847 208 SKIKQ-----KH-----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQP-NTISLSGVLAAC 272 (523)
Q Consensus 208 ~~m~~-----~~-----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p-~~~t~~~ll~a~ 272 (523)
++..+ ++ ..+++.+-. .|...|++++|++.|++..+. +-.| ...++..+-..+
T Consensus 167 ~~al~~~~~~~~~~~~~~~~~~~lg~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 234 (383)
T 3ulq_A 167 RQAYEIYKEHEAYNIRLLQCHSLFAT------------NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK 234 (383)
T ss_dssp HHHHHHHHTCSTTHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHH------------HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 76532 22 246777777 888999999999999987653 1111 124777888889
Q ss_pred hccCChhHHHHHHHHHHHh----cCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc---
Q 035847 273 AQVKGFKLGKEIHGYVLRH----HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY--- 345 (523)
Q Consensus 273 ~~~g~~~~a~~i~~~~~~~----g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~--- 345 (523)
...|+.++|.+.+....+. +..|+ ...++..+-..|.+.|+. ++|..+|+...+..
T Consensus 235 ~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 235 NSQSQYEDAIPYFKRAIAVFEESNILPS---------------LPQAYFLITQIHYKLGKI--DKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCGGG---------------HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhccchh---------------HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHc
Confidence 9999999999999988773 11111 235688899999999999 99999998876531
Q ss_pred CCccCHhHHHHHHHHHHhhCC---HHHHHHHHHhCCCCCCCC-----------CCCCHHHHHHHHHHHHhhC
Q 035847 346 NMEPAMEQYCCMVDLLARAGQ---FDDTLNFMKKMPFEPSSA-----------EPCNPDIAEHAARHLFELE 403 (523)
Q Consensus 346 g~~p~~~ty~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-----------~~~~~~~~~~~~~~l~~~~ 403 (523)
+-......+..+-..+...|+ +++|..++++.+..|+.. ..|+.+.|....++.+++.
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 111123446677788888998 999999999985443332 4566666666655555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=82.48 Aligned_cols=223 Identities=11% Similarity=0.027 Sum_probs=145.3
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|++++........+....++..+-..+...|+++.|...+....+..-. .+.........+|+.+-..|..
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK------TLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH------HcCCcchHHHHHHHHHHHHHHH
Confidence 3566666666654333335667888889999999999999999988865200 0000011245789999999999
Q ss_pred cCCchHHHHHHHHhhHc---------c--------HHHHhhccCChHHHHHHHHHHHHh------cCCC-CceeHhHHHH
Q 035847 83 LGYYEEIVNLFYLLIDE---------G--------VYKACSELKDHRVGKDVYDYMISI------KFEG-NACVKRPVLD 138 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~---------g--------ll~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~ 138 (523)
.|++++|++.|.+.... . +...+...|++++|.+.+...++. +-.| ...++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999987654 1 666778899999999999999876 1122 3567888999
Q ss_pred HHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCC------hHHHHHHHhcCC
Q 035847 139 MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRY------LKVAHCKFSKIK 211 (523)
Q Consensus 139 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~------~~~A~~vf~~m~ 211 (523)
.|.+.|++++|...|+++ .++....... ...+. ...+..+...+...+. +..+...++...
T Consensus 178 ~~~~~g~~~~A~~~~~~~-----------l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEI-----------LTRAHEKEFG-SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHTCHHHHHHHHHHH-----------HHHHHHHHSS-SCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHcCCHHHHHHHHHHH-----------HHHHHHhcCC-CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 999999999999999981 1111110001 12222 2233333333333222 344444444444
Q ss_pred CC---ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 212 QK---HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 212 ~~---~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.. ...+|..+.. .|.+.|++++|..+|++..+
T Consensus 246 ~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 246 VDSPTVNTTLRSLGA------------LYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHH
Confidence 32 2346777777 88999999999999998765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00022 Score=75.81 Aligned_cols=191 Identities=10% Similarity=0.055 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHhcCChHHHH-HHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC--
Q 035847 185 LVNNSLMDFYAKCRYLKVAH-CKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM-- 258 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~-~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~-- 258 (523)
.+|-.....+-+.|+.++|. .+|++... | +...|-..+. ..-+.|++++|.++|+.+.....
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~------------~ee~~~~~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSE------------QYELNTKIPEIETTILSCIDRIHLD 411 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHH------------HHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 34444445555678888885 88876542 4 3444666666 67788999999999999886420
Q ss_pred -------CCC------------HHHHHHHHHHhhccCChhHHHHHHHHHHHh-cCCchHHHHhHHHhhhCCCCCcchHHH
Q 035847 259 -------QPN------------TISLSGVLAACAQVKGFKLGKEIHGYVLRH-HIQLSTGVGIALISIQGLGTGSFVWNS 318 (523)
Q Consensus 259 -------~p~------------~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~p~~~~~n~ 318 (523)
.|+ ...|...+....+.|.++.|+++++..++. +.. .+.+....+
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~---------------~~~lyi~~A 476 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV---------------TPDIYLENA 476 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS---------------CTHHHHHHH
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------ChHHHHHHH
Confidence 142 346777788888889999999999999885 211 112222233
Q ss_pred HHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-------------
Q 035847 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA------------- 384 (523)
Q Consensus 319 li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------------- 384 (523)
.+.-. ..++. +.|..+|+...+.++ -+..-+...++.....|+.+.|..+|++. ...|+..
T Consensus 477 ~lE~~-~~~d~--e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 477 YIEYH-ISKDT--KTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp HHHHT-TTSCC--HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred HHHHH-hCCCH--HHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33322 23458 999999999988633 23445568888888899999999999984 3344321
Q ss_pred -CCCCHHHHHHHHHHHHhhCCCCC
Q 035847 385 -EPCNPDIAEHAARHLFELEPLSS 407 (523)
Q Consensus 385 -~~~~~~~~~~~~~~l~~~~~~~~ 407 (523)
.+|+.+.+..+.+++.+..|+++
T Consensus 552 ~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 552 SKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 89999999999999999999865
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.5e-06 Score=84.38 Aligned_cols=294 Identities=7% Similarity=-0.065 Sum_probs=151.2
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCCh---HHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHH
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNL---ELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGM 79 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~ 79 (523)
+++|+.+|++..+.|-. .++..|-..+...|+. ++|...+...... +...+..|-..
T Consensus 19 ~~~A~~~~~~aa~~g~~---~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----------------~~~A~~~Lg~~ 78 (452)
T 3e4b_A 19 TVTAQQNYQQLAELGYS---EAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----------------SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHTCC---TGGGTCC---------------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----------------CHHHHHHHHHH
Confidence 45666666666555422 2222222223334444 5666655554421 34445445443
Q ss_pred HHhcC-----CchHHHHHHHHhhHcc-------HHHHhhccCChH---HHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC
Q 035847 80 YNVLG-----YYEEIVNLFYLLIDEG-------VYKACSELKDHR---VGKDVYDYMISIKFEGNACVKRPVLDMFIKCG 144 (523)
Q Consensus 80 ~~~~g-----~~~~A~~l~~~m~~~g-------ll~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 144 (523)
+...| ++++|+..|++-...| +-..+...+... .+.+.+......| +......|-..|...+
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 44443 5567777777666655 333333333222 2333333333333 3445555666666666
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcC---ChHHHHHHHhcCCC---CChhhH
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR---YLKVAHCKFSKIKQ---KHLVSW 218 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g---~~~~A~~vf~~m~~---~~~~t~ 218 (523)
.++.+...... +... . ...+...+..|-.+|.+.| +.++|...|+...+ ++...+
T Consensus 156 ~~~~~~~~a~~--------------~~~~-a----~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 156 TYDQHLDDVER--------------ICKA-A----LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CGGGGHHHHHH--------------HHHH-H----TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CcccCHHHHHH--------------HHHH-H----HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 44333322211 1111 1 1223337888888899999 88999999887543 344444
Q ss_pred HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHH-h--hccCChhHHHHHHHHHHHhcCCc
Q 035847 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA-C--AQVKGFKLGKEIHGYVLRHHIQL 295 (523)
Q Consensus 219 ~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~i~~~~~~~g~~~ 295 (523)
..|-..|.. +....+++++|++.|+... .| +...+..+-.. + ...++.++|.+.+....+.|
T Consensus 217 ~~Lg~~y~~--------g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--- 281 (452)
T 3e4b_A 217 DSVARVLGD--------ATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--- 281 (452)
T ss_dssp HHHHHHHTC--------GGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHhC--------CCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---
Confidence 555552211 1222378999999999987 43 33334444333 2 45889999999999998876
Q ss_pred hHHHHhHHHhhhCCCCCcchHHHHHHHHHhcC-----CCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh----hCC
Q 035847 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCG-----AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR----AGQ 366 (523)
Q Consensus 296 ~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g-----~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~----~g~ 366 (523)
+...++.|-..|. .| +. ++|..+|+... . | +...+..|-..|.. ..+
T Consensus 282 ----------------~~~A~~~Lg~~y~-~G~g~~~d~--~~A~~~~~~Aa-~-g---~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 282 ----------------QPRAELLLGKLYY-EGKWVPADA--KAAEAHFEKAV-G-R---EVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp ----------------CHHHHHHHHHHHH-HCSSSCCCH--HHHHHHHHTTT-T-T---CHHHHHHHHHHHHTTTTSSCC
T ss_pred ----------------CHHHHHHHHHHHH-cCCCCCCCH--HHHHHHHHHHh-C-C---CHHHHHHHHHHHHCCCCCCcC
Confidence 2234455555554 44 66 88888887765 2 3 44555555555554 348
Q ss_pred HHHHHHHHHhC
Q 035847 367 FDDTLNFMKKM 377 (523)
Q Consensus 367 ~~~A~~~~~~m 377 (523)
.++|..++++-
T Consensus 338 ~~~A~~~~~~A 348 (452)
T 3e4b_A 338 PQKALDHLLTA 348 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888774
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.7e-06 Score=82.89 Aligned_cols=294 Identities=8% Similarity=0.008 Sum_probs=180.3
Q ss_pred HHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCc---hHHHHHHHHhhHcc-----
Q 035847 29 FQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYY---EEIVNLFYLLIDEG----- 100 (523)
Q Consensus 29 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g----- 100 (523)
-..+.+.|++++|.+++....+.|. ..++..|-..|...|.. ++|+..|++..+..
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~----------------~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~ 73 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGY----------------SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQA 73 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC----------------CTGGGTCC----------------------------CHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHH
Confidence 3444567889999999998887763 33333444445556676 78888887655432
Q ss_pred -HHHHhhccC-----ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhh
Q 035847 101 -VYKACSELK-----DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174 (523)
Q Consensus 101 -ll~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~ 174 (523)
+-..+...+ +.++|...+....+.|. ...+..|-..|...+..+.+...++. ....
T Consensus 74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~---------------~~~a 135 (452)
T 3e4b_A 74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQ---------------ISQW 135 (452)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHH---------------HHHH
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHH---------------HHHH
Confidence 222133333 67788888888887652 33677777777776654433222222 0001
Q ss_pred hhcCCCCCchhHHHHHHHHHHhcC----ChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccC---CchHHH
Q 035847 175 LKKDDLESDLLVNNSLMDFYAKCR----YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG---DGETAL 247 (523)
Q Consensus 175 ~~~~g~~~d~~~~~~li~~~~k~g----~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g---~~~~A~ 247 (523)
... | +...+..|-..|...+ +.+.|..+++.....+...+..|-. .|.+.| +.++|+
T Consensus 136 ~~~-g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~------------~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 136 QAA-G---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELAT------------VYQKKQQPEQQAELL 199 (452)
T ss_dssp HHH-T---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHH------------HHHHTTCHHHHHHHH
T ss_pred HHC-C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHH------------HHHHcCCcccHHHHH
Confidence 112 3 2446667777777777 4556666777766666668888888 777888 899999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhcc----CChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHH-
Q 035847 248 EFFSRMIQTDMQPNTISLSGVLAACAQV----KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDM- 322 (523)
Q Consensus 248 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~- 322 (523)
+.|+...+.|. ++...+..|-..|... ++.++|.+.+.... .| +...++.|-..
T Consensus 200 ~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-------------------~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 200 KQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-------------------YPASWVSLAQLL 258 (452)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-------------------STHHHHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-------------------CHHHHHHHHHHH
Confidence 99999988874 4455444455556554 68899999998887 44 33455555554
Q ss_pred H--HhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhC-----CHHHHHHHHHhCCCCCCCC-----------
Q 035847 323 Y--GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG-----QFDDTLNFMKKMPFEPSSA----------- 384 (523)
Q Consensus 323 ~--~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~----------- 384 (523)
| ...++. ++|..+|+...+. | +...+..|-..|. .| ++++|.+++++-- |+..
T Consensus 259 ~~~~~~~d~--~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 259 YDFPELGDV--EQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYR 329 (452)
T ss_dssp HHSGGGCCH--HHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHH
T ss_pred HhCCCCCCH--HHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 3 457888 9999999998876 6 5666777777776 56 9999999999976 4444
Q ss_pred ----CCCCHHHHHHHHHHHHhh
Q 035847 385 ----EPCNPDIAEHAARHLFEL 402 (523)
Q Consensus 385 ----~~~~~~~~~~~~~~l~~~ 402 (523)
...|.+.|...+++..+.
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHHHHHHHHHhh
Confidence 345888887777777654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.9e-06 Score=69.32 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=105.6
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
.|..+...|...|++++|..+|++ ... ....+..++..+...|...|++++|...|+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~-------------------~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQK-------------------ALE-LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHH-------------------HHH-cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 467788899999999999999998 322 123357788889999999999999999999875
Q ss_pred C---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHH
Q 035847 212 Q---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288 (523)
Q Consensus 212 ~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~ 288 (523)
+ .+...|..+.. .+.+.|++++|.+.|+++.+.. +.+..++..+...+...|+.+.|.+.+..+
T Consensus 63 ~~~~~~~~~~~~l~~------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 63 ELDPRSAEAWYNLGN------------AYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHCTTCHHHHHHHHH------------HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHCCCchHHHHHHHH------------HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3 45667888888 8889999999999999998753 235678888899999999999999999988
Q ss_pred HHh
Q 035847 289 LRH 291 (523)
Q Consensus 289 ~~~ 291 (523)
.+.
T Consensus 130 ~~~ 132 (136)
T 2fo7_A 130 LEL 132 (136)
T ss_dssp HHH
T ss_pred Hcc
Confidence 764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.4e-06 Score=91.82 Aligned_cols=161 Identities=11% Similarity=0.088 Sum_probs=123.9
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+..+|+.|-..|.+.|++++|++.|++..+.. +-+..+|+.|-..|.+.|++++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--------------------------P~~~~a~~nLg~~l~~~g~~~e 61 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--------------------------PEFAAAHSNLASVLQQQGKLQE 61 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------SCCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHHH
Confidence 46788999999999999999999998876632 2346678888888888888888
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAG 224 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~ 224 (523)
|...|+++ ++. .| +...|+.+-..|.+.|++++|.+.|++..+ | +...|+.+-.
T Consensus 62 A~~~~~~A------------------l~l---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~- 119 (723)
T 4gyw_A 62 ALMHYKEA------------------IRI---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS- 119 (723)
T ss_dssp HHHHHHHH------------------HHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-
T ss_pred HHHHHHHH------------------HHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Confidence 88888871 222 34 366788888888888888888888876542 3 4567888877
Q ss_pred hhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 225 ~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.|.+.|++++|++.|++..+. .|+ ...|..+..++...|++++|.+.++.+.+
T Consensus 120 -----------~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 120 -----------IHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp -----------HHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred -----------HHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 788888888888888887773 454 56777888888888888888887777655
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-06 Score=91.56 Aligned_cols=162 Identities=7% Similarity=-0.012 Sum_probs=133.0
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+..+|+.|-.++.+.|++++|...+++.++.. ..+..+|+.+-..|.+.|++++|++.|++..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--------------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~ 73 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--------------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34678889899999999999999999998864 2367899999999999999999999998877633
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+-+..+|+.+-..|.+.|++++|.+.|+++ ++.
T Consensus 74 --------------------------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kA------------------l~l--- 106 (723)
T 4gyw_A 74 --------------------------PTFADAYSNMGNTLKEMQDVQGALQCYTRA------------------IQI--- 106 (723)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH---
T ss_pred --------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHh---
Confidence 334678889999999999999999999881 222
Q ss_pred CC-chhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 181 ES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 181 ~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.| +...|+.+-..|.+.|++++|...|++.. .| +...|..+.. .|.+.|++++|.+.|++..+
T Consensus 107 ~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~------------~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 107 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH------------CLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH------------HHHHTTCCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhh------------HHHhcccHHHHHHHHHHHHH
Confidence 33 46788999999999999999999998765 34 4567888888 88888999988888887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.3e-06 Score=75.09 Aligned_cols=158 Identities=9% Similarity=-0.096 Sum_probs=113.8
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
|...|...-..+.+.|++++|+..|++..+.. -.++..++..+-..|.+.|++++
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~ 60 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-------------------------NNQDSVTAYNCGVCADNIKKYKE 60 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------------------------TTCCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-------------------------CCCCcHHHHHHHHHHHHhhcHHH
Confidence 45667777777778888888888887766533 12677777778999999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hhhHHHHHHhh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH-LVSWNAMLAGY 225 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~-~~t~~~li~~~ 225 (523)
|...|++ ... --+.+..+|..+-..|.+.|+.++|...|+...+ |+ ...+..+...|
T Consensus 61 A~~~~~~-------------------al~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 120 (228)
T 4i17_A 61 AADYFDI-------------------AIK-KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYY 120 (228)
T ss_dssp HHHHHHH-------------------HHH-TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHH-------------------HHH-hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9999998 222 1223577899999999999999999999987653 43 32322233333
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC---HHHHHHHHHHhhccCCh
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN---TISLSGVLAACAQVKGF 278 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~---~~t~~~ll~a~~~~g~~ 278 (523)
...|. .+.+.|++++|++.|++..+. .|+ ...+..+-.++...|..
T Consensus 121 ~~~g~-----~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 121 LKEGQ-----KFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHH-----HHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhH-----HHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 32222 788899999999999998874 565 45566666666666655
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.35 E-value=9.4e-06 Score=73.92 Aligned_cols=191 Identities=8% Similarity=0.013 Sum_probs=134.8
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
|...+...-..+...|++++|...+....+... .++...|..+-..|.+.|++++|+..|++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN 72 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-------------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence 456677777788899999999999999988752 2577777778889999999999999998877643
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+.+..+|..+-..|.+.|++++|...|+++ ++.
T Consensus 73 --------------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------l~~--- 105 (228)
T 4i17_A 73 --------------------------YNLANAYIGKSAAYRDMKNNQEYIATLTEG------------------IKA--- 105 (228)
T ss_dssp --------------------------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH---
T ss_pred --------------------------cchHHHHHHHHHHHHHcccHHHHHHHHHHH------------------HHH---
Confidence 335667888999999999999999999981 222
Q ss_pred CC-ch-------hHHHHHHHHHHhcCChHHHHHHHhcCCC--CC---hhhHHHHHHhhhhcCCccccchhhccCCchHHH
Q 035847 181 ES-DL-------LVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH---LVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247 (523)
Q Consensus 181 ~~-d~-------~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~---~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~ 247 (523)
.| +. .+|..+-..+.+.|++++|...|+...+ |+ ...|..+-. .|...| .
T Consensus 106 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~------------~~~~~~-----~ 168 (228)
T 4i17_A 106 VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV------------LFYNNG-----A 168 (228)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH------------HHHHHH-----H
T ss_pred CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH------------HHHHHH-----H
Confidence 22 23 4577788888999999999999998765 44 345666655 444333 3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 248 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
.+++++...+ ..+...|..... ...+.+++|...++...+.
T Consensus 169 ~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 169 DVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 3444444432 223334433322 2345567777777777764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=8.5e-06 Score=77.65 Aligned_cols=174 Identities=11% Similarity=-0.024 Sum_probs=124.2
Q ss_pred CchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHh----cCCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhcccc
Q 035847 85 YYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISI----KFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159 (523)
Q Consensus 85 ~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 159 (523)
++++|.+.|.+. ...+...|++++|.+.+....+. |-.++ ..+|+.+-..|.+.|++++|...|++
T Consensus 32 ~~~~A~~~~~~a-----~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~---- 102 (292)
T 1qqe_A 32 KFEEAADLCVQA-----ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN---- 102 (292)
T ss_dssp HHHHHHHHHHHH-----HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred cHHHHHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH----
Confidence 467777777663 34556667777777777666543 21111 46888999999999999999999998
Q ss_pred ccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhc-CChHHHHHHHhcCCC--C---C----hhhHHHHHHhhhhc
Q 035847 160 NLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKC-RYLKVAHCKFSKIKQ--K---H----LVSWNAMLAGYALG 228 (523)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~-g~~~~A~~vf~~m~~--~---~----~~t~~~li~~~~~~ 228 (523)
+.++... . |-.+ -..+++.+-..|.+. |++++|...|++..+ | + ..+|+.+-.
T Consensus 103 -------Al~l~~~---~-g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~----- 166 (292)
T 1qqe_A 103 -------AIQIFTH---R-GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD----- 166 (292)
T ss_dssp -------HHHHHHH---T-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred -------HHHHHHH---c-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----
Confidence 2222211 1 2111 245788899999996 999999999987642 1 1 245777777
Q ss_pred CCccccchhhccCCchHHHHHHHHHHhcCCCCCH------HHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNT------ISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 229 g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.|.+.|++++|+..|++.......... .+|..+..++...|+.+.|...++...+
T Consensus 167 -------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 167 -------LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp -------HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred -------HHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 889999999999999999875433222 1566777788889999999999887754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-05 Score=77.45 Aligned_cols=268 Identities=9% Similarity=-0.005 Sum_probs=169.5
Q ss_pred chHHHHHHHH--HhcCCchHHHHHHHHhhHcc--------HH------H--HhhccCChHHHH---------HHHHHHHH
Q 035847 71 FSWTSMMGMY--NVLGYYEEIVNLFYLLIDEG--------VY------K--ACSELKDHRVGK---------DVYDYMIS 123 (523)
Q Consensus 71 ~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g--------ll------~--~~~~~~~~~~a~---------~~~~~m~~ 123 (523)
.+=+.|-.-| .+.+++++|..++++..... ++ . .....+.+.... +.++.+..
T Consensus 11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 90 (378)
T 3q15_A 11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET 90 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence 3334444444 67899999999998865432 11 1 111112222233 55555433
Q ss_pred hcCCCCc----eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC-CchhHHHHHHHHHHhcC
Q 035847 124 IKFEGNA----CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE-SDLLVNNSLMDFYAKCR 198 (523)
Q Consensus 124 ~g~~p~~----~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~d~~~~~~li~~~~k~g 198 (523)
..-..+. ..+-..-..+...|++++|...|+++ .++. +..+-. ....++..+-..|...|
T Consensus 91 ~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~a-----------l~~~----~~~~~~~~~a~~~~~lg~~y~~~~ 155 (378)
T 3q15_A 91 PQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREA-----------EKEL----PFVSDDIEKAEFHFKVAEAYYHMK 155 (378)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HTTG----GGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHH----hhCCChHHHHHHHHHHHHHHHHcC
Confidence 2111110 01222233456789999999999881 1110 110111 13557888899999999
Q ss_pred ChHHHHHHHhcCCC-----CC-----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCC-CHH
Q 035847 199 YLKVAHCKFSKIKQ-----KH-----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQP-NTI 263 (523)
Q Consensus 199 ~~~~A~~vf~~m~~-----~~-----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p-~~~ 263 (523)
+.+.|...++...+ ++ ..+++.+-. .|...|++++|++.|++..+. +-.+ ...
T Consensus 156 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~------------~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG------------NYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH------------HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998887776431 22 246777777 888999999999999887652 2111 235
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 264 t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
++..+-..+...|+.++|.+.+....+..-.. +-+....++..+-..|.+.|+. ++|..+|+...+
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~ 289 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREK------------VPDLLPKVLFGLSWTLCKAGQT--QKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------CGGGHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh------------CChhHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHH
Confidence 67778888899999999999999887621000 0011235678888999999999 999999998876
Q ss_pred hcCCccC---HhHHHHHHHHHHhhCC---HHHHHHHHHhCCC
Q 035847 344 EYNMEPA---MEQYCCMVDLLARAGQ---FDDTLNFMKKMPF 379 (523)
Q Consensus 344 ~~g~~p~---~~ty~~li~~~~~~g~---~~~A~~~~~~m~~ 379 (523)
...-.++ ...+..+-..+...|+ +++|..++++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~ 331 (378)
T 3q15_A 290 HITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL 331 (378)
T ss_dssp HCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC
Confidence 5222122 3456666667778888 9999999998643
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=4.5e-05 Score=72.59 Aligned_cols=209 Identities=7% Similarity=-0.052 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHH
Q 035847 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNS 189 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~ 189 (523)
+++|.+.+... ...|...|++++|...|+++ ..++. +. |-.++ ..+|+.
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~a-----------l~~~~---~~-~~~~~~a~~~~~ 82 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKA-----------ADYQK---KA-GNEDEAGNTYVE 82 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHH-----------HHHHH---HT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHH-----------HHHHH---Hh-CCHHHHHHHHHH
Confidence 66666666654 44677888999998888871 22221 11 32222 568999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcCCccccchhhcc-CCchHHHHHHHHHHhcC--
Q 035847 190 LMDFYAKCRYLKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGGFREEITGFTQY-GDGETALEFFSRMIQTD-- 257 (523)
Q Consensus 190 li~~~~k~g~~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g~~~~i~~~~~~-g~~~~A~~lf~~M~~~g-- 257 (523)
+-..|.+.|++++|...|+...+ .+ ..+|+.+-. .|.+. |++++|+..|++..+..
T Consensus 83 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~------------~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE------------ILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------HHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 99999999999999988876542 12 246777777 88886 99999999999877631
Q ss_pred --CCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCC-cchHHHHHHHHHhcCCCchHH
Q 035847 258 --MQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG-SFVWNSLIDMYGRCGAIQKNE 333 (523)
Q Consensus 258 --~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~-~~~~n~li~~~~~~g~~~~~~ 333 (523)
-.+. ..++..+-..+.+.|++++|...++...+........ ... ...|..+..+|...|+. ++
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~--~~ 217 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-----------QWSLKDYFLKKGLCQLAATDA--VA 217 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-----------GGGHHHHHHHHHHHHHHTTCH--HH
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc-----------cHHHHHHHHHHHHHHHHcCCH--HH
Confidence 1111 3568888889999999999999999998753221100 000 01567788889999999 99
Q ss_pred HHHHHHHhHHhcCCccCHh------HHHHHHHHHH--hhCCHHHHHHHHHhC
Q 035847 334 GWRYFEMMKKEYNMEPAME------QYCCMVDLLA--RAGQFDDTLNFMKKM 377 (523)
Q Consensus 334 a~~~~~~m~~~~g~~p~~~------ty~~li~~~~--~~g~~~~A~~~~~~m 377 (523)
|...|++..+ +.|+.. .+..++.++. ..+++++|+..++++
T Consensus 218 A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 218 AARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 9999998864 455522 3444556664 467789999988776
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-05 Score=75.37 Aligned_cols=158 Identities=8% Similarity=0.026 Sum_probs=111.3
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHc----c-------HHHHhhccCChHHHHHHHHHHHHhcCCC-----Cce
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----G-------VYKACSELKDHRVGKDVYDYMISIKFEG-----NAC 131 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-------ll~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~ 131 (523)
++..++..+-.++...|++++|++++.+-... + .+..+.+.|+.+.|...+..|.+. .| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 34555567788888999999999999887332 2 777788899999999999999775 56 345
Q ss_pred eHhHHHHH--HH--hcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 035847 132 VKRPVLDM--FI--KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207 (523)
Q Consensus 132 ~~~~li~~--~~--~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf 207 (523)
+...|..+ .. ..++..+|..+|++ +.. -.|+..+...++.++.+.|++++|++.+
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~E-------------------l~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEE-------------------LSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHH-------------------HHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHH-------------------HHH--hCCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555 22 23489999999999 544 2354344455556899999999999999
Q ss_pred hcCCC------------C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 208 SKIKQ------------K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 208 ~~m~~------------~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
+.+.+ | |..+.-.+|. .....|+ +|.++++++++. .|+...
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~------------l~~~lgk--~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQIT------------LALMQGL--DTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHH------------HHHHTTC--TTHHHHHHHHHT--TCCCHH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHH------------HHHHhCh--HHHHHHHHHHHh--CCCChH
Confidence 86533 2 4456634444 3334565 889999999884 465443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.10 E-value=7.1e-05 Score=71.03 Aligned_cols=168 Identities=10% Similarity=-0.038 Sum_probs=120.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK-----HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~-----~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.++..+...+-.+|...|++++|.+++..-..+ +...+-.++. .+.+.|+++.|.+.+++|.+
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq------------i~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIE------------VALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHh
Confidence 455555568889999999999999999876332 3456777777 88999999999999999987
Q ss_pred cCCCC-----CHHHHHHHHHHhhc--cC--ChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhc
Q 035847 256 TDMQP-----NTISLSGVLAACAQ--VK--GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326 (523)
Q Consensus 256 ~g~~p-----~~~t~~~ll~a~~~--~g--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~ 326 (523)
. .| +..+...|..++.. .| +...|..+|+++.+.. |+..+-..++.++.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~------------------p~~~~~~lLln~~~~~ 224 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF------------------PTWKTQLGLLNLHLQQ 224 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS------------------CSHHHHHHHHHHHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC------------------CCcccHHHHHHHHHHc
Confidence 4 56 46677777767433 24 8999999999986532 2212334455589999
Q ss_pred CCCchHHHHHHHHHhHHhc----C---CccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC-CCCCCC
Q 035847 327 GAIQKNEGWRYFEMMKKEY----N---MEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP-FEPSSA 384 (523)
Q Consensus 327 g~~~~~~a~~~~~~m~~~~----g---~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~ 384 (523)
|++ ++|.+.++.+.+.+ + ..|+ ..+...+|......|+ +|.++++++. ..|+.+
T Consensus 225 g~~--~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 225 RNI--AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp TCH--HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred CCH--HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 999 99999999776532 0 1244 6677677766666776 7788877753 455544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00029 Score=65.44 Aligned_cols=179 Identities=11% Similarity=-0.002 Sum_probs=118.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
+...+-.+-..+.+.|++++|...|+...+ |+ ...|..+-. .|.+.|++++|+..|++..+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~------------~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLAR------------AYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH------------HHHHhCcHHHHHHHHHHHHHH
Confidence 455666777888899999999999998764 43 346667777 888999999999999999885
Q ss_pred CC-CCC-HHHHHHHHHHhhc--------cCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCC-CCCcchHHHHHHHHHh
Q 035847 257 DM-QPN-TISLSGVLAACAQ--------VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL-GTGSFVWNSLIDMYGR 325 (523)
Q Consensus 257 g~-~p~-~~t~~~ll~a~~~--------~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~-~p~~~~~n~li~~~~~ 325 (523)
.. .|+ ...+..+-.++.. .|+.+.|...++.+++..-. +.....++.....+ ..-...+..+-..|..
T Consensus 82 ~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 82 YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 222 3455566667777 89999999999999875311 11111111000000 0000012455778889
Q ss_pred cCCCchHHHHHHHHHhHHhcCCcc-CHhHHHHHHHHHHhh----------CCHHHHHHHHHh
Q 035847 326 CGAIQKNEGWRYFEMMKKEYNMEP-AMEQYCCMVDLLARA----------GQFDDTLNFMKK 376 (523)
Q Consensus 326 ~g~~~~~~a~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~----------g~~~~A~~~~~~ 376 (523)
.|+. ++|...|+...+.+.-.| ....+..+..+|... |++++|...+++
T Consensus 161 ~g~~--~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 161 RELY--EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp TTCH--HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred ccCH--HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 9999 999999999987632222 235666777777766 666666666555
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.7e-05 Score=66.94 Aligned_cols=161 Identities=11% Similarity=0.042 Sum_probs=113.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS 150 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 150 (523)
..+..+-..+.+.|++++|+..|++..+.. +.+...+..+-..|.+.|++++|.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~~~la~~~~~~g~~~~A~ 60 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL--------------------------QSRGDVKLAKADCLLETKQFELAQ 60 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--------------------------HTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 345556667778888888888888776543 446678888999999999999999
Q ss_pred HHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHH-HHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHhhh
Q 035847 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDF-YAKCRYLKVAHCKFSKIK--QK-HLVSWNAMLAGYA 226 (523)
Q Consensus 151 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~-~~k~g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~ 226 (523)
..|++ ... ..|+...+..+... +.+.+...+|...|+... .| +...|..+-.
T Consensus 61 ~~~~~-------------------a~~--~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~--- 116 (176)
T 2r5s_A 61 ELLAT-------------------IPL--EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAV--- 116 (176)
T ss_dssp HHHTT-------------------CCG--GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHH---
T ss_pred HHHHH-------------------hhh--ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHH---
Confidence 99998 221 12233333222111 122233334666666554 34 4677888888
Q ss_pred hcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 227 ~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.+.+.|++++|...|++..+....+ +...+..+...+...|+.++|...+...+.
T Consensus 117 ---------~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 117 ---------QYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ---------HHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ---------HHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 8889999999999999998765433 356788888899999999999998887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.02 E-value=8.8e-05 Score=66.60 Aligned_cols=165 Identities=14% Similarity=0.110 Sum_probs=108.5
Q ss_pred HhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHH----------------HHHHHHhcCCchHHHHHH
Q 035847 30 QRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTS----------------MMGMYNVLGYYEEIVNLF 93 (523)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~l~ 93 (523)
..+...|+++.|...+....+... + +...|.. +-..|.+.|++++|+..|
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p--~------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 77 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNI--D------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY 77 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCH--H------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--C------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345578999999999999887642 1 2233333 455555555555555555
Q ss_pred HHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhh
Q 035847 94 YLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173 (523)
Q Consensus 94 ~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~ 173 (523)
++..+ .. +-+...+..+-..|.+.|++++|...|++
T Consensus 78 ~~al~-------------------------~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~------------------ 113 (208)
T 3urz_A 78 KELLQ-------------------------KA-PNNVDCLEACAEMQVCRGQEKDALRMYEK------------------ 113 (208)
T ss_dssp HHHHH-------------------------HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH------------------
T ss_pred HHHHH-------------------------HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH------------------
Confidence 55444 31 44677899999999999999999999999
Q ss_pred hhhcCCCCC-chhHHHHHHHHHHhcCC--hHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHH
Q 035847 174 HLKKDDLES-DLLVNNSLMDFYAKCRY--LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF 250 (523)
Q Consensus 174 ~~~~~g~~~-d~~~~~~li~~~~k~g~--~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf 250 (523)
.-. +.| +..++..+-..|...|. .+.+...++....|+...|...-.|+ ++...|++++|+..|
T Consensus 114 -al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~----------~~~~~~~~~~A~~~~ 180 (208)
T 3urz_A 114 -ILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL----------SKLFTTRYEKARNSL 180 (208)
T ss_dssp -HHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH----------HHHHHHTHHHHHHHH
T ss_pred -HHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHH----------HHHHccCHHHHHHHH
Confidence 322 234 46678888777766553 45667778777776654432222222 556678999999999
Q ss_pred HHHHhcCCCCCHHHHHH
Q 035847 251 SRMIQTDMQPNTISLSG 267 (523)
Q Consensus 251 ~~M~~~g~~p~~~t~~~ 267 (523)
++..+ +.|+......
T Consensus 181 ~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 181 QKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHTT--TSCCHHHHHH
T ss_pred HHHHH--hCCCHHHHHH
Confidence 99876 5677654433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00014 Score=78.12 Aligned_cols=163 Identities=8% Similarity=-0.102 Sum_probs=126.0
Q ss_pred cCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHH
Q 035847 33 PKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYK 103 (523)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~ 103 (523)
...+++++|...++......+... ......+...|..+-..|.+.|++++|++.|++..+.. +-.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~------~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDAD------GVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccc------ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 678999999999998872111000 00002367789999999999999999999999988764 556
Q ss_pred HhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc
Q 035847 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183 (523)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d 183 (523)
++...|++++|.+.|+..++.. +-+...|..+-..|.+.|++++ ...|++ +++. -..+
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~------------------al~~--~P~~ 533 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQT------------------VWST--NDGV 533 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHH------------------HHHH--CTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHH------------------HHHh--CCch
Confidence 6778899999999999998874 3367788899999999999999 888888 1332 1235
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hhhHHHHHH
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH-LVSWNAMLA 223 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~-~~t~~~li~ 223 (523)
...|..+-.+|.+.|+.++|...|++..+ |+ ...|..+..
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 576 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAV 576 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHH
Confidence 67889999999999999999999999875 44 456777777
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00038 Score=62.14 Aligned_cols=159 Identities=15% Similarity=0.039 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
..+..+-..|.+.|++++|...|+....|+...|..+-. .|.+.|++++|++.|++..+.. +.+...
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~------------~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 73 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGC------------MYTILKNMTEAEKAFTRSINRD-KHLAVA 73 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHhC-ccchHH
Confidence 345566778889999999999999998888889999988 8899999999999999988753 335678
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhC--CC-CCcchHHHHHHHHHhcCCCchHHHHHHHHHh
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG--LG-TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~--~~-p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m 341 (523)
+..+-.++...|+.++|.+.++...+..-......+ ...+ .. .+...|..+-..|...|+. ++|...|+..
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a 147 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY----KILGLQFKLFACEVLYNIAFMYAKKEEW--KKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC----GGGTBCCEEEHHHHHHHHHHHHHHTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHH----HHhccccCccchHHHHHHHHHHHHccCH--HHHHHHHHHH
Confidence 888889999999999999999999874211100000 0000 11 1225677888888999999 9999999888
Q ss_pred HHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 342 ~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
.+ +.|+. ..+..++|...+.+
T Consensus 148 l~---~~p~~-----------~~~~~~~a~~~~~~ 168 (213)
T 1hh8_A 148 TS---MKSEP-----------RHSKIDKAMECVWK 168 (213)
T ss_dssp HT---TCCSG-----------GGGHHHHHHHHHHT
T ss_pred HH---cCccc-----------ccchHHHHHHHHHh
Confidence 74 35654 23455666666654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00013 Score=63.47 Aligned_cols=155 Identities=12% Similarity=-0.071 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 186 ~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
.+..+...+.+.|++++|...|+...+ | +...|..+-. .+.+.|++++|+..|+..... .|+.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~------------~~~~~g~~~~A~~~~~~a~~~--~p~~ 73 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKAD------------CLLETKQFELAQELLATIPLE--YQDN 73 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHH------------HHHHTTCHHHHHHHHTTCCGG--GCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH------------HHHHCCCHHHHHHHHHHhhhc--cCCh
Confidence 345566778899999999999999874 3 5567888888 888999999999999988664 3444
Q ss_pred HHHHHHHHH-hhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHh
Q 035847 263 ISLSGVLAA-CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341 (523)
Q Consensus 263 ~t~~~ll~a-~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m 341 (523)
..+..+... +...+....+.+.++..++.. +.+...+..+-..|...|+. ++|...|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-----------------P~~~~~~~~la~~~~~~g~~--~~A~~~~~~~ 134 (176)
T 2r5s_A 74 SYKSLIAKLELHQQAAESPELKRLEQELAAN-----------------PDNFELACELAVQYNQVGRD--EEALELLWNI 134 (176)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-----------------TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcccH--HHHHHHHHHH
Confidence 332221111 112222334566666666532 12467888899999999999 9999999998
Q ss_pred HHhcCCccC---HhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 342 KKEYNMEPA---MEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 342 ~~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
.+. .|+ ...+..+...+...|+.++|...+++
T Consensus 135 l~~---~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 135 LKV---NLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HTT---CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHh---CcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 754 454 56888999999999999999988875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=9.6e-05 Score=70.12 Aligned_cols=156 Identities=10% Similarity=-0.030 Sum_probs=118.4
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...+..+-..+...|+++.|...++...+.. ..+...+..+-..|.+.|++++|+.+|++.....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS--------------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 44456666677778999999999999988764 2367788899999999999999999999876543
Q ss_pred ---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHh
Q 035847 101 ---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171 (523)
Q Consensus 101 ---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ 171 (523)
....+...++.+.|.+.+...++.. +.+...+..+-..|...|++++|...|++
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~---------------- 244 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFG---------------- 244 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHH----------------
Confidence 2233556677777888888887763 44677888899999999999999999988
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 172 ~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
+++...-..+...+..|...|...|+.++|...|++
T Consensus 245 --~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 245 --HLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp --HHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred --HHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 133201112367888999999999999888877764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00025 Score=67.16 Aligned_cols=167 Identities=6% Similarity=-0.047 Sum_probs=123.2
Q ss_pred CCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 035847 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206 (523)
Q Consensus 127 ~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~v 206 (523)
+.+...+..+-..+.+.|++++|...|++ .-. --.-+...+..+...|.+.|+.++|...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~-------------------al~-~~P~~~~a~~~la~~~~~~g~~~~A~~~ 173 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXD-------------------AWQ-LSNQNGEIGLLLAETLIALNRSEDAEAV 173 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HTTSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHH-------------------HHH-hCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 44455667777888899999999999988 222 1223567888899999999999999999
Q ss_pred HhcCCC--CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHH
Q 035847 207 FSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 207 f~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i 284 (523)
++.... |+......... . .+.+.++.++|+..|++..... +.+...+..+-.++...|+.++|...
T Consensus 174 l~~~~~~~p~~~~~~~~~~-~----------~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~ 241 (287)
T 3qou_A 174 LXTIPLQDQDTRYQGLVAQ-I----------ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALEL 241 (287)
T ss_dssp HTTSCGGGCSHHHHHHHHH-H----------HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCchhhcchHHHHHHHH-H----------HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHH
Confidence 998874 65442222221 1 4567788888999998887753 23567777888889999999999999
Q ss_pred HHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhH
Q 035847 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342 (523)
Q Consensus 285 ~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~ 342 (523)
+..+++..-.. .+...+..+...|...|+. ++|...|++-.
T Consensus 242 l~~~l~~~p~~---------------~~~~a~~~l~~~~~~~g~~--~~a~~~~r~al 282 (287)
T 3qou_A 242 LFGHLRXDLTA---------------ADGQTRXTFQEILAALGTG--DALASXYRRQL 282 (287)
T ss_dssp HHHHHHHCTTG---------------GGGHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHhccccc---------------ccchHHHHHHHHHHHcCCC--CcHHHHHHHHH
Confidence 99998753211 1256788899999999999 88888877644
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00014 Score=78.00 Aligned_cols=181 Identities=10% Similarity=-0.005 Sum_probs=142.9
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhh--------cCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK--------KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
...|++++|...|++ .. . ....+...+..+-..|.+.|++++|...|+...+
T Consensus 402 ~~~~~~~~A~~~~~~-------------------al~~~~~~~~~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRA-------------------ARHGALDADGV-DFSESVELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp TTTCCHHHHHHHHHH-------------------HHTC--------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHH-------------------hhhhccccccc-ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 678899999999988 22 1 2233567888899999999999999999998764
Q ss_pred --C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHH
Q 035847 213 --K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYV 288 (523)
Q Consensus 213 --~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~ 288 (523)
| +...|..+-. .|.+.|++++|++.|++..+. .| +...|..+-.++.+.|++++ .+.++..
T Consensus 462 ~~p~~~~a~~~lg~------------~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 462 RVGWRWRLVWYRAV------------AELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp HHCCCHHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred cCcchHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 3 5668888878 888999999999999998874 35 45677888888999999999 9999998
Q ss_pred HHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhC--
Q 035847 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAG-- 365 (523)
Q Consensus 289 ~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g-- 365 (523)
++.. ..+...|..+-..|.+.|+. ++|...|++..+ +.|+ ...|..+..++...|
T Consensus 527 l~~~-----------------P~~~~a~~~lg~~~~~~g~~--~~A~~~~~~al~---l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 527 WSTN-----------------DGVISAAFGLARARSAEGDR--VGAVRTLDEVPP---TSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHC-----------------TTCHHHHHHHHHHHHHTTCH--HHHHHHHHTSCT---TSTTHHHHHHHHHHHTC-----
T ss_pred HHhC-----------------CchHHHHHHHHHHHHHcCCH--HHHHHHHHhhcc---cCcccHHHHHHHHHHHHccCCC
Confidence 8743 22456889999999999999 999999998864 4677 567777777776644
Q ss_pred ------CHHHHHHHHHhCC
Q 035847 366 ------QFDDTLNFMKKMP 378 (523)
Q Consensus 366 ------~~~~A~~~~~~m~ 378 (523)
++++|.+.+..+.
T Consensus 585 ~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 585 SEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp --CCHHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHHhhCC
Confidence 4777888888774
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00016 Score=67.29 Aligned_cols=166 Identities=11% Similarity=0.025 Sum_probs=119.8
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCC----ceeHhHHHHHHHhcC
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN----ACVKRPVLDMFIKCG 144 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g 144 (523)
+...+-.+-..+.+.|++++|+..|++.... .|+ ..++..+-..|.+.|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------------------------~p~~~~~~~a~~~lg~~~~~~~ 66 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY---------------------------GRTHEWAADAQFYLARAYYQNK 66 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG---------------------------CSCSTTHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------------------------CCCCcchHHHHHHHHHHHHHhC
Confidence 4555666667777888888888888887664 243 456777888999999
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcC-CCCCchhHHHHHHHHHHh--------cCChHHHHHHHhcCCC--C
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD-DLESDLLVNNSLMDFYAK--------CRYLKVAHCKFSKIKQ--K 213 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~d~~~~~~li~~~~k--------~g~~~~A~~vf~~m~~--~ 213 (523)
++++|...|++ +++.. +-.....++..+-..|.+ .|+.++|...|+...+ |
T Consensus 67 ~~~~A~~~~~~------------------~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 67 EYLLAASEYER------------------FIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp CHHHHHHHHHH------------------HHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHH------------------HHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 99999999998 12220 111234567777788888 9999999999998753 4
Q ss_pred Ch-hhHH-----------------HHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC--CHHHHHHHHHHhh
Q 035847 214 HL-VSWN-----------------AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP--NTISLSGVLAACA 273 (523)
Q Consensus 214 ~~-~t~~-----------------~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p--~~~t~~~ll~a~~ 273 (523)
+. ..+. .+-. .|.+.|++++|+..|++..+..... ....+..+..++.
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 129 NHELVDDATQKIRELRAKLARKQYEAAR------------LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 32 3332 2344 7889999999999999998753221 2345666767777
Q ss_pred cc----------CChhHHHHHHHHHHHh
Q 035847 274 QV----------KGFKLGKEIHGYVLRH 291 (523)
Q Consensus 274 ~~----------g~~~~a~~i~~~~~~~ 291 (523)
.. |++++|...+..+++.
T Consensus 197 ~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 197 AYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchhhcccchHHHHHHHHHHHHHH
Confidence 66 8889999999988874
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.4e-05 Score=71.23 Aligned_cols=199 Identities=9% Similarity=-0.052 Sum_probs=126.8
Q ss_pred CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHH
Q 035847 35 LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG 114 (523)
Q Consensus 35 ~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a 114 (523)
.|++++|..++++..+..- ... +...+++++|...|.+ ....+...|+++.|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--------------~~~---------~~~~~~~~~A~~~~~~-----a~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--------------TSF---------MKWKPDYDSAASEYAK-----AAVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------CCS---------SSCSCCHHHHHHHHHH-----HHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--------------ccc---------cCCCCCHHHHHHHHHH-----HHHHHHHcCCHHHH
Confidence 4567788888777665421 110 0113566666666655 23345555666666
Q ss_pred HHHHHHHHHhcCCC-----CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHH
Q 035847 115 KDVYDYMISIKFEG-----NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNN 188 (523)
Q Consensus 115 ~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~ 188 (523)
.+.+....+..... -..+|+.+...|.+.|++++|...|+++ .+++. +. |-.. -..+++
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A-----------l~l~~---~~-g~~~~~a~~~~ 120 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA-----------SVMYV---EN-GTPDTAAMALD 120 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHH-----------HHHHH---TT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-----------HHHHH---Hc-CCHHHHHHHHH
Confidence 66666555432111 1346778888999999999999999882 22221 11 2111 245778
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc---
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT--- 256 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~--- 256 (523)
.+-..|.+ |++++|...|++..+ .+ ..+|+.+-. .|.+.|++++|++.|++....
T Consensus 121 ~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~------------~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 121 RAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR------------LLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHHHHH
Confidence 88888888 999999998886542 11 346777777 888999999999999988762
Q ss_pred -CCCCCH-HHHHHHHHHhhccCChhHHHHHHHHHH
Q 035847 257 -DMQPNT-ISLSGVLAACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 257 -g~~p~~-~t~~~ll~a~~~~g~~~~a~~i~~~~~ 289 (523)
+..++. .++..+..++...|+.+.|...++...
T Consensus 188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 222222 255556666666788888888887776
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=8.7e-05 Score=77.78 Aligned_cols=130 Identities=8% Similarity=-0.074 Sum_probs=74.3
Q ss_pred CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
+...+..+-..|.+.|++++|...|++ .-. --..+...+..+-..|.+.|+.++|.+.|+
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQR-------------------GLA-LHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHH-------------------HHT-TSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHH-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345566666666666666666666666 211 111234556666666666666666666666
Q ss_pred cCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc---CChhHHH
Q 035847 209 KIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV---KGFKLGK 282 (523)
Q Consensus 209 ~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~---g~~~~a~ 282 (523)
+..+ | +...|..+-. .|.+.|++++|.+.|++..+.. .-+...+..+..++... |+.++|.
T Consensus 82 ~al~~~p~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGH------------ALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHhcCCCCHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHH
Confidence 5432 2 3445555555 6666666666666666665532 11344555555566666 6666666
Q ss_pred HHHHHHHHh
Q 035847 283 EIHGYVLRH 291 (523)
Q Consensus 283 ~i~~~~~~~ 291 (523)
+.++...+.
T Consensus 149 ~~~~~al~~ 157 (568)
T 2vsy_A 149 AQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=5.7e-05 Score=79.16 Aligned_cols=150 Identities=6% Similarity=-0.093 Sum_probs=85.8
Q ss_pred CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHH
Q 035847 35 LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG 114 (523)
Q Consensus 35 ~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a 114 (523)
.|++++|...+++..+.. ..+...|..+-..|.+.|++++|++.|++..+..
T Consensus 2 ~g~~~~A~~~~~~al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 53 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--------------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------------- 53 (568)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--------------
T ss_pred CccHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------
Confidence 356777777777766542 2356788888888999999999999998876643
Q ss_pred HHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHH
Q 035847 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194 (523)
Q Consensus 115 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~ 194 (523)
+.+..++..+-..|.+.|++++|...|+++ ++. -..+...+..+-..|
T Consensus 54 ------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------l~~--~p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 54 ------------PGHPEAVARLGRVRWTQQRHAEAAVLLQQA------------------SDA--APEHPGIALWLGHAL 101 (568)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------Hhc--CCCCHHHHHHHHHHH
Confidence 234556666666777777777777777661 111 122355666666777
Q ss_pred HhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhcc---CCchHHHHHHHHHHhc
Q 035847 195 AKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQY---GDGETALEFFSRMIQT 256 (523)
Q Consensus 195 ~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~---g~~~~A~~lf~~M~~~ 256 (523)
.+.|+.++|.+.|++..+ | +...|..+.. .+.+. |+.++|.+.|++..+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~------------~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN------------WRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH------------HHHHhhccccHHHHHHHHHHHHhc
Confidence 777777777777665432 2 3445666666 55556 6777777777766654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00024 Score=64.46 Aligned_cols=153 Identities=9% Similarity=0.003 Sum_probs=109.1
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCce----eH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNAC----VK 133 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~ 133 (523)
...+-.+-..+.+.|++++|+..|+++.... +..++.+.|+++.|...++.+++.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 3445556677889999999999999987532 5667788999999999999998763 4322 23
Q ss_pred hHHHHHHHh------------------cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHH-------
Q 035847 134 RPVLDMFIK------------------CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVN------- 187 (523)
Q Consensus 134 ~~li~~~~~------------------~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~------- 187 (523)
-.+-..|.+ .|+.++|...|++ +++. .|+ ..++
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~------------------~l~~---~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK------------------LVRG---YPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHH------------------HHTT---CTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH------------------HHHH---CcCChhHHHHHHHHH
Confidence 333333433 4677788888777 2222 122 1111
Q ss_pred ----------HHHHHHHHhcCChHHHHHHHhcCCC--CCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHH
Q 035847 188 ----------NSLMDFYAKCRYLKVAHCKFSKIKQ--KHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251 (523)
Q Consensus 188 ----------~~li~~~~k~g~~~~A~~vf~~m~~--~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~ 251 (523)
-.+-..|.+.|+.++|...|+.+.+ |+. ..+..+.. +|.+.|+.++|.+.|+
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~------------~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMEN------------AYRQMQMNAQAEKVAK 208 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH------------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHH------------HHHHcCCcHHHHHHHH
Confidence 2455678899999999999998763 543 35667777 8899999999999999
Q ss_pred HHHhcC
Q 035847 252 RMIQTD 257 (523)
Q Consensus 252 ~M~~~g 257 (523)
.+...+
T Consensus 209 ~l~~~~ 214 (225)
T 2yhc_A 209 IIAANS 214 (225)
T ss_dssp HHHHCC
T ss_pred HHHhhC
Confidence 988764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00034 Score=62.39 Aligned_cols=124 Identities=10% Similarity=-0.032 Sum_probs=102.9
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
+..+-..|.+.|++++|...|++ .+.|+..++..+...|.+.|++++|...|+...+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~-----------------------a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 65 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSA-----------------------VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 65 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-----------------------SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH-----------------------HcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566778899999999999998 3566888999999999999999999999987642
Q ss_pred ---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC--------------CCCC-HHHHHHHHHHhhc
Q 035847 213 ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--------------MQPN-TISLSGVLAACAQ 274 (523)
Q Consensus 213 ---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g--------------~~p~-~~t~~~ll~a~~~ 274 (523)
.+...|..+-. .|.+.|++++|++.|++..+.. ..|+ ...+..+-.++..
T Consensus 66 ~~~~~~~~~~~lg~------------~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 66 RDKHLAVAYFQRGM------------LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred hCccchHHHHHHHH------------HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 45668888888 8899999999999999998742 1222 2667788888999
Q ss_pred cCChhHHHHHHHHHHHh
Q 035847 275 VKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 275 ~g~~~~a~~i~~~~~~~ 291 (523)
.|+.+.|.+.++...+.
T Consensus 134 ~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 134 KEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 99999999999998874
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00094 Score=70.94 Aligned_cols=216 Identities=10% Similarity=-0.005 Sum_probs=143.1
Q ss_pred ccCChHHHH-HHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC---
Q 035847 107 ELKDHRVGK-DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES--- 182 (523)
Q Consensus 107 ~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--- 182 (523)
..|+.+.|. +++++.+.. ++.+...|-..+...-+.|+++.|..+|+++. .....-+... +. .. |
T Consensus 355 ~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l-------~~l~~~~~~~-~~-~~-p~~~ 423 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI-------DRIHLDLAAL-ME-DD-PTNE 423 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHHHHHHHHH-HH-HS-TTCH
T ss_pred hcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------HHHHHHhhhh-hh-cc-Ccch
Confidence 345666675 777777654 34566677888899999999999999999820 0000000000 00 01 2
Q ss_pred ---------chhHHHHHHHHHHhcCChHHHHHHHhcCCCC-ChhhHHHHHHhhhhcCCccccchhhc-cCCchHHHHHHH
Q 035847 183 ---------DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK-HLVSWNAMLAGYALGGFREEITGFTQ-YGDGETALEFFS 251 (523)
Q Consensus 183 ---------d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~-~~~t~~~li~~~~~~g~~~~i~~~~~-~g~~~~A~~lf~ 251 (523)
...+|-..+...-+.|+++.|+.+|....+. ...+|...+. ++. .-.+ .++.+.|..+|+
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~-~A~--------lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLE-NAY--------IEYHISKDTKTACKVLE 494 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHH-HHH--------HHHTTTSCCHHHHHHHH
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHH-HHH--------HHHHhCCCHHHHHHHHH
Confidence 2447888888888999999999999886432 2222222221 000 1122 355899999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCch
Q 035847 252 RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331 (523)
Q Consensus 252 ~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~ 331 (523)
...+. ..-+...+...++-....|+.+.|+.+|+..++....+.. ....|...+.-=.+.|..
T Consensus 495 ~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~--------------~~~lw~~~~~fE~~~G~~-- 557 (679)
T 4e6h_A 495 LGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL--------------LKMIFQKVIFFESKVGSL-- 557 (679)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH--------------HHHHHHHHHHHHHHTCCS--
T ss_pred HHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH--------------HHHHHHHHHHHHHHcCCH--
Confidence 98875 3334555667777777789999999999998775322111 346788899999999999
Q ss_pred HHHHHHHHHhHHhcCCccCHhHHHHHHHHHH
Q 035847 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362 (523)
Q Consensus 332 ~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~ 362 (523)
+.+..+.++|.+. .|+......+++-|.
T Consensus 558 ~~~~~v~~R~~~~---~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 558 NSVRTLEKRFFEK---FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHHHHHH---STTCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh---CCCCcHHHHHHHHhc
Confidence 9999999999876 566655555555553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00086 Score=60.23 Aligned_cols=151 Identities=8% Similarity=-0.088 Sum_probs=106.7
Q ss_pred HhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC----CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCC
Q 035847 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG----RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179 (523)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g 179 (523)
.+...++.++|.+.|....+.| +...+..|-.+|.. + +.++|...|+++ .+. |
T Consensus 27 ~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A------------------~~~-g 83 (212)
T 3rjv_A 27 TWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA------------------VEA-G 83 (212)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH------------------HHT-T
T ss_pred HHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH------------------HHC-C
Confidence 3344566667777776666654 45667777777777 6 899999999881 122 2
Q ss_pred CCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCCCC-----hhhHHHHHHhhhhcCCccccchhhc----cCCchHH
Q 035847 180 LESDLLVNNSLMDFYAK----CRYLKVAHCKFSKIKQKH-----LVSWNAMLAGYALGGFREEITGFTQ----YGDGETA 246 (523)
Q Consensus 180 ~~~d~~~~~~li~~~~k----~g~~~~A~~vf~~m~~~~-----~~t~~~li~~~~~~g~~~~i~~~~~----~g~~~~A 246 (523)
+...+..|-..|.. .++.++|...|+...+.+ ..+++.|-. .|.. .+++++|
T Consensus 84 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~------------~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 84 ---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL------------IYASGVHGPEDDVKA 148 (212)
T ss_dssp ---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH------------HHHHTSSSSCCHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH------------HHHcCCCCCCCHHHH
Confidence 45567777777776 789999999998876533 567777777 5555 7789999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhhcc-C-----ChhHHHHHHHHHHHhcCC
Q 035847 247 LEFFSRMIQTDMQPNTISLSGVLAACAQV-K-----GFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 247 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~i~~~~~~~g~~ 294 (523)
+..|++-.+. .++...+..|-..|... | +.++|.+.++...+.|..
T Consensus 149 ~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 149 SEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 9999998876 22334555555555432 3 899999999999888753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0001 Score=59.01 Aligned_cols=96 Identities=16% Similarity=0.129 Sum_probs=75.4
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
..+|..+...+.+.|++++|++.|+++.... +.+..++..+...|.+.|++++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~~~~~~A 62 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------PNNAEAWYNLGNAYYKQGDYDEA 62 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------cCcHHHHHHHHHHHHHhCCHHHH
Confidence 5678888888888999999999888876543 34566788888889999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
..+|++ ... ....+..++..+...|.+.|+.++|...|+.+.
T Consensus 63 ~~~~~~-------------------~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 63 IEYYQK-------------------ALE-LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH-------------------HHH-hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999988 322 123456788888889999999999999988764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00063 Score=61.65 Aligned_cols=185 Identities=11% Similarity=-0.032 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~ 258 (523)
..+..+...+.+.|++++|...|+.+.+ |+. ..+..+.. .|.+.|++++|+..|++..+...
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~------------~~~~~~~~~~A~~~~~~~l~~~P 72 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIY------------AYYKNADLPLAQAAIDRFIRLNP 72 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH------------HHHhcCCHHHHHHHHHHHHHHCc
Confidence 3455566778899999999999998753 432 35666777 88899999999999999987432
Q ss_pred C-CCH-HHHHHHHHHhh------------------ccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCC-cchHH
Q 035847 259 Q-PNT-ISLSGVLAACA------------------QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG-SFVWN 317 (523)
Q Consensus 259 ~-p~~-~t~~~ll~a~~------------------~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~-~~~~n 317 (523)
. |.. ..+-.+-.++. ..|+.++|...++.+++.--. +.....++.....+... ....-
T Consensus 73 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~ 151 (225)
T 2yhc_A 73 THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEY 151 (225)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHH
Confidence 2 111 12222222332 357889999999888764211 11111111110000000 00112
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC-CCCCCC
Q 035847 318 SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP-FEPSSA 384 (523)
Q Consensus 318 ~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~ 384 (523)
.+-..|.+.|+. ++|...|+.+.+.+.-.|. ...+..+..++.+.|+.++|.+.++.+. ..|+.+
T Consensus 152 ~~a~~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 152 SVAEYYTERGAW--VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHTCH--HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHcCcH--HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 345678899999 9999999999876322221 2578889999999999999999988753 344443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00032 Score=55.97 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=79.8
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccH
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gl 101 (523)
..++..+...+...|+++.|...+..+.+.. ..+..+|..+...+.+.|++++|+..|+++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD- 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-
Confidence 4567778888889999999999999998764 2367789999999999999999999998877643
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+..++..+...|.+.|++++|...|++
T Consensus 74 -------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 74 -------------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44667888899999999999999999988
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0048 Score=58.74 Aligned_cols=210 Identities=9% Similarity=-0.006 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcC--CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHH
Q 035847 113 VGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCG--RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNS 189 (523)
Q Consensus 113 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g--~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~ 189 (523)
+|.++.+.++.. .|+ ..+||.--..+...| ++++++.+++. +++. ..-+..+|+.
T Consensus 51 ~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~------------------~L~~--nPk~y~aW~~ 108 (306)
T 3dra_A 51 RALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEE------------------IALD--NEKNYQIWNY 108 (306)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHH------------------HHHH--CTTCCHHHHH
T ss_pred HHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHH------------------HHHH--CcccHHHHHH
Confidence 344444444333 454 456777777777777 89999999988 1222 2234445555
Q ss_pred HHHHH----Hhc---CChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCch--HHHHHHHHHHhcC
Q 035847 190 LMDFY----AKC---RYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGE--TALEFFSRMIQTD 257 (523)
Q Consensus 190 li~~~----~k~---g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~--~A~~lf~~M~~~g 257 (523)
--..+ .+. ++++++..+++.+.+ +|-.+|+---- .+.+.|.++ ++++.++.+.+..
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~------------vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKW------------LVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHH------------HHHHhcccChHHHHHHHHHHHHhC
Confidence 44444 445 789999999998864 56677777655 555667777 9999999999865
Q ss_pred CCCCHHHHHHHHHHhhccCC------hhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCch
Q 035847 258 MQPNTISLSGVLAACAQVKG------FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331 (523)
Q Consensus 258 ~~p~~~t~~~ll~a~~~~g~------~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~ 331 (523)
.. |...|+---....+.+. ++++.+....+++.. +-|...|+-+-..+.+.|+.
T Consensus 177 ~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-----------------p~n~SaW~y~~~ll~~~~~~-- 236 (306)
T 3dra_A 177 LK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-----------------PQNPSTWNYLLGIHERFDRS-- 236 (306)
T ss_dssp TT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-----------------SSCHHHHHHHHHHHHHTTCC--
T ss_pred CC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-----------------CCCccHHHHHHHHHHhcCCC--
Confidence 43 67777765555566665 677777777776643 33677899988888888886
Q ss_pred HH-HHHHHHHhHHhcC--CccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 332 NE-GWRYFEMMKKEYN--MEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 332 ~~-a~~~~~~m~~~~g--~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.+ ...+.+...+. + -..+...+..+.+.|.+.|+.++|.++++.+
T Consensus 237 ~~~~~~~~~~~~~~-~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 237 ITQLEEFSLQFVDL-EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp GGGGHHHHHTTEEG-GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 44 44566655432 2 1345788899999999999999999988886
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0011 Score=61.88 Aligned_cols=196 Identities=8% Similarity=-0.070 Sum_probs=133.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHH-------HHHHhcCCchHHHHHHHHhhHccHHHHhh
Q 035847 34 KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMM-------GMYNVLGYYEEIVNLFYLLIDEGVYKACS 106 (523)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li-------~~~~~~g~~~~A~~l~~~m~~~gll~~~~ 106 (523)
..++...|.+.|....+... .....|+.++ ..+.+.++..+++..+..-..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP--------------~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~-------- 75 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE--------------SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ-------- 75 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--------
T ss_pred cCCCHHHHHHHHHHHHHhCh--------------hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 57899999999999998742 3467888774 444444444444444433222
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCc----------------------eeHhHHHHHHHhcCCHHHHHHHhhhccccccCch
Q 035847 107 ELKDHRVGKDVYDYMISIKFEGNA----------------------CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL 164 (523)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~g~~p~~----------------------~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~ 164 (523)
+.|+. ..+-.+...+...|++++|.++|+.
T Consensus 76 -------------------l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~--------- 127 (282)
T 4f3v_A 76 -------------------ISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEA--------- 127 (282)
T ss_dssp -------------------CCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTS---------
T ss_pred -------------------CChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHH---------
Confidence 22221 1223466778899999999999998
Q ss_pred hhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-CCh----hhHHHHHHhhhhcCCccccchhhc
Q 035847 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHL----VSWNAMLAGYALGGFREEITGFTQ 239 (523)
Q Consensus 165 ~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-~~~----~t~~~li~~~~~~g~~~~i~~~~~ 239 (523)
... + .|+....-.+-..+.+.+++++|...|+...+ ++. ..+..+=. ++.+
T Consensus 128 ----------~~~-~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~------------al~~ 183 (282)
T 4f3v_A 128 ----------APV-A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGV------------AAAN 183 (282)
T ss_dssp ----------SCC-T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHH------------HHHH
T ss_pred ----------HHh-c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHH------------HHHH
Confidence 544 2 35443666667789999999999999986654 222 24555556 8889
Q ss_pred cCCchHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 240 YGDGETALEFFSRMIQTDMQPN--TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 240 ~g~~~~A~~lf~~M~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
.|++++|++.|++.......|. .......-.++.+.|+.++|..+++.+....-. ..++.+|.+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~~ 249 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALKD 249 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHhC
Confidence 9999999999999875443364 224444555788899999999999999886433 445555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.001 Score=63.05 Aligned_cols=158 Identities=9% Similarity=0.011 Sum_probs=115.5
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------------HHHHhhccCChHHHHHHHHHHHHhcCC-CC----
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------------VYKACSELKDHRVGKDVYDYMISIKFE-GN---- 129 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------------ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~---- 129 (523)
...+...+..+...|++++|++.+.+..... +...+...|+.+.|...+....+.... .+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 4566677888999999999999998665432 334456778999999999988764321 12
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC--chhHHHHHHHHHHhcCChHHHHHHH
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES--DLLVNNSLMDFYAKCRYLKVAHCKF 207 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--d~~~~~~li~~~~k~g~~~~A~~vf 207 (523)
..+|+.+-..|...|++++|...|+++ .++. +..+-.+ ...+++.+...|.+.|++++|...|
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~ka-----------l~~~----~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQI-----------LKQL----EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHH----HHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHH----HhcCccccchHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 347888999999999999999999981 1111 1111122 2358899999999999999999999
Q ss_pred hcCCC--CC-------hhhHHHHHHhhhhcCCccccchhhccCCchHH-HHHHHHHH
Q 035847 208 SKIKQ--KH-------LVSWNAMLAGYALGGFREEITGFTQYGDGETA-LEFFSRMI 254 (523)
Q Consensus 208 ~~m~~--~~-------~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A-~~lf~~M~ 254 (523)
++..+ ++ ..+|..+-. .|.+.|++++| ...|++..
T Consensus 220 ~kal~~~~~~~~~~~~~~~~~~lg~------------~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 220 NKAIEISCRINSMALIGQLYYQRGE------------CLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTBCSSHHHHHHHHHH------------HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH------------HHHHcCCcHHHHHHHHHHHH
Confidence 86532 11 346777777 88889999999 77677654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0007 Score=64.70 Aligned_cols=212 Identities=8% Similarity=-0.020 Sum_probs=132.5
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|.+++++-.+..- .. .+...++++.|...+.... ..|..
T Consensus 7 ~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a~----------------------------~~~~~ 48 (307)
T 2ifu_A 7 ISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKAA----------------------------VAFKN 48 (307)
T ss_dssp HHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHHH----------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHHH----------------------------HHHHH
Confidence 5678888887654311 11 1222578888887766542 33444
Q ss_pred cCCchHHHHHHHHhhHcc---------------HHHHhhccCChHHHHHHHHHHHHhcCC---C--CceeHhHHHHHHHh
Q 035847 83 LGYYEEIVNLFYLLIDEG---------------VYKACSELKDHRVGKDVYDYMISIKFE---G--NACVKRPVLDMFIK 142 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------------ll~~~~~~~~~~~a~~~~~~m~~~g~~---p--~~~~~~~li~~~~~ 142 (523)
.|++++|++.|.+..... +...+...|++++|.+.+...++.-.. | -..+++.+-..|.+
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 455555555554433211 445566677888887777776654211 1 13567778888888
Q ss_pred cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC--
Q 035847 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----KH-- 214 (523)
Q Consensus 143 ~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----~~-- 214 (523)
|++++|...|+++ ..++.. . +-.+ ...+++.+-..|.+.|++++|...|++..+ ++
T Consensus 129 -g~~~~A~~~~~~A-----------l~~~~~---~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (307)
T 2ifu_A 129 -LDLSKAVHLYQQA-----------AAVFEN---E-ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192 (307)
T ss_dssp -TCHHHHHHHHHHH-----------HHHHHH---T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -CCHHHHHHHHHHH-----------HHHHHh---C-CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence 9999999999982 122211 1 2111 246788899999999999999999987643 22
Q ss_pred --hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC------HHHHHHHHHHhhccCChhHHHHH
Q 035847 215 --LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN------TISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 215 --~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~i 284 (523)
...|..+.. .+...|++++|+..|++.. . .|+ ..+...++.++ ..++.+...++
T Consensus 193 ~~~~~~~~~g~------------~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 193 TCYKKCIAQVL------------VQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHH------------HHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 124555555 6677899999999999987 3 342 12344555555 56777666664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00018 Score=64.54 Aligned_cols=121 Identities=11% Similarity=0.003 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 035847 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-- 212 (523)
Q Consensus 135 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-- 212 (523)
.+-..|.+.|++++|...|+++ ++. -+-+...+..+-..|.+.|+.++|...|+...+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~a------------------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKEL------------------LQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHH------------------HHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3888899999999999999981 222 123577899999999999999999999998753
Q ss_pred C-ChhhHHHHHHhhhhcCCccccchhhccCC--chHHHHHHHHHHhcCCCCCHH--HHHHHHHHhhccCChhHHHHHHHH
Q 035847 213 K-HLVSWNAMLAGYALGGFREEITGFTQYGD--GETALEFFSRMIQTDMQPNTI--SLSGVLAACAQVKGFKLGKEIHGY 287 (523)
Q Consensus 213 ~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~--~~~A~~lf~~M~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~i~~~ 287 (523)
| +..+|..+-. .|...|+ ...+...|+... .|+.. .+...-.++...|+.++|...++.
T Consensus 119 P~~~~a~~~lg~------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 119 ADNLAANIFLGN------------YYYLTAEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp TTCHHHHHHHHH------------HHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4 5567888877 5544443 344555565543 34433 333334455567899999999998
Q ss_pred HHHh
Q 035847 288 VLRH 291 (523)
Q Consensus 288 ~~~~ 291 (523)
.++.
T Consensus 183 al~l 186 (208)
T 3urz_A 183 VILR 186 (208)
T ss_dssp HTTT
T ss_pred HHHh
Confidence 8763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00089 Score=63.39 Aligned_cols=157 Identities=9% Similarity=0.006 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHcc---------------HHHHhhccCChHHHHHHHHHHHHhcCC-CCc----ee
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEG---------------VYKACSELKDHRVGKDVYDYMISIKFE-GNA----CV 132 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~g---------------ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~~----~~ 132 (523)
+...+..+...|++++|.+++++..... +...+...++.+.|...+....+.... ++. .+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344778899999999999999876532 333445667999999999999985433 222 26
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
++.+-..|...|+++.|...|+++ .++.. +..+..+. ..+|+.+...|.+.|+.++|...++...
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~a-----------l~~~~---~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQI-----------LKQLE---ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHH---HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHH---hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999999991 11111 11022222 3488899999999999999999988654
Q ss_pred C--------CC-hhhHHHHHHhhhhcCCccccchhhccCC-chHHHHHHHHHHh
Q 035847 212 Q--------KH-LVSWNAMLAGYALGGFREEITGFTQYGD-GETALEFFSRMIQ 255 (523)
Q Consensus 212 ~--------~~-~~t~~~li~~~~~~g~~~~i~~~~~~g~-~~~A~~lf~~M~~ 255 (523)
+ +. ..+|..+-. .|.+.|+ .++|.+.|++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~------------~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGE------------CLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHH------------HHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHH------------HHHHhCCcHHHHHHHHHHHHH
Confidence 2 11 346777777 7778885 5899988887653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00023 Score=60.49 Aligned_cols=129 Identities=9% Similarity=-0.067 Sum_probs=91.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS 150 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 150 (523)
..|..+-..+...|++++|+..|.+..... +.+..++..+...|.+.|++++|.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~A~ 67 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--------------------------PSNAIYYGNRSLAYLRTECYGYAL 67 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------------------CCChHHHHHHHHHHHHcCCHHHHH
Confidence 456666666667777777777776655432 346778888889999999999999
Q ss_pred HHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhh
Q 035847 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYAL 227 (523)
Q Consensus 151 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~ 227 (523)
..|++ ... ....+..++..+...|.+.|+.++|...|+...+ | +...+..+..+.
T Consensus 68 ~~~~~-------------------a~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~-- 125 (166)
T 1a17_A 68 GDATR-------------------AIE-LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN-- 125 (166)
T ss_dssp HHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH--
T ss_pred HHHHH-------------------HHH-hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--
Confidence 99988 222 1233567888888999999999999999987653 3 344453333310
Q ss_pred cCCccccchhhccCCchHHHHHHHHHHh
Q 035847 228 GGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 228 ~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.+.+.|++++|++.+.....
T Consensus 126 --------~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 126 --------KIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHcccchHH
Confidence 46677889999988876543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0024 Score=60.36 Aligned_cols=165 Identities=10% Similarity=-0.028 Sum_probs=118.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC--C---Ch---h-hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 187 NNSLMDFYAKCRYLKVAHCKFSKIKQ--K---HL---V-SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 187 ~~~li~~~~k~g~~~~A~~vf~~m~~--~---~~---~-t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
+...+..+.+.|++++|..+++...+ + +. . .+..+.. .+...|++++|+..|++.....
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~------------~~~~~~~~~~Ai~~~~~al~~~ 145 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAA------------YVLKKVDYEYCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH------------HHTTSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHH------------HHHcccCHHHHHHHHHHHHHHh
Confidence 33447788999999999999987643 1 11 1 2333544 6677889999999999998743
Q ss_pred CC-CC----HHHHHHHHHHhhccCChhHHHHHHHHHHHh--cCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCc
Q 035847 258 MQ-PN----TISLSGVLAACAQVKGFKLGKEIHGYVLRH--HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330 (523)
Q Consensus 258 ~~-p~----~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~ 330 (523)
.. ++ ..+|+.+-..|...|+.+.|...+..+.+. ....+. .....+|+.+-..|.+.|+.
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~~nlg~~y~~~~~y- 212 (293)
T 3u3w_A 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE------------EFDVKVRYNHAKALYLDSRY- 212 (293)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH------------HHHHHHHHHHHHHHHHTTCH-
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch------------hHHHHHHHHHHHHHHHHhHH-
Confidence 22 23 236888888999999999999999998852 110111 01224788899999999999
Q ss_pred hHHHHHHHHHhHHh---cCCccC-HhHHHHHHHHHHhhCC-HHHHHHHHHhC
Q 035847 331 KNEGWRYFEMMKKE---YNMEPA-MEQYCCMVDLLARAGQ-FDDTLNFMKKM 377 (523)
Q Consensus 331 ~~~a~~~~~~m~~~---~g~~p~-~~ty~~li~~~~~~g~-~~~A~~~~~~m 377 (523)
++|..+++...+. .+..+. ...|..+-..+.+.|+ +++|.+.+++.
T Consensus 213 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 213 -EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp -HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 9999999877642 133333 5788889999999994 68888887763
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00055 Score=60.35 Aligned_cols=157 Identities=7% Similarity=-0.076 Sum_probs=108.4
Q ss_pred HhcCChHHHHH---HHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh----cCCCC-CHHHHH
Q 035847 195 AKCRYLKVAHC---KFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ----TDMQP-NTISLS 266 (523)
Q Consensus 195 ~k~g~~~~A~~---vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~----~g~~p-~~~t~~ 266 (523)
...|++++|.+ ++..-+.....+|+.+-. .+...|++++|+..|++... .+..| ...++.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 70 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGY------------VYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALH 70 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHH------------HHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 45788999999 665533334557777777 88889999999999988765 22222 345677
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhc--CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 267 GVLAACAQVKGFKLGKEIHGYVLRHH--IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 267 ~ll~a~~~~g~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
.+-..+...|++++|.+.+....+.- ...+.. .....++.+-..|...|++ ++|...|++..+.
T Consensus 71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~ 136 (203)
T 3gw4_A 71 QVGMVERMAGNWDAARRCFLEERELLASLPEDPL------------AASANAYEVATVALHFGDL--AGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH------------HHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH------------HHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHH
Confidence 77778888999999999988876631 110000 0124577888899999999 9999999887643
Q ss_pred cCCccC----HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 345 YNMEPA----MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 345 ~g~~p~----~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
..-.++ ..++..+...+...|++++|.+.+++.
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 111112 345677888899999999999888763
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00046 Score=60.87 Aligned_cols=159 Identities=11% Similarity=0.010 Sum_probs=109.2
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--------
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-------- 212 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-------- 212 (523)
...|++++|.+.++. ... .......+++.+-..|...|++++|...|++..+
T Consensus 3 ~~~g~~~~A~~~~~~-------------------~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 62 (203)
T 3gw4_A 3 FEAHDYALAERQAQA-------------------LLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62 (203)
T ss_dssp ----CHHHHHHHHHH-------------------HHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH
T ss_pred cccccHHHHHHHHHH-------------------hcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc
Confidence 356778888874444 222 2234677889999999999999999998887542
Q ss_pred -CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCC--CHHHHHHHHHHhhccCChhHHHHHH
Q 035847 213 -KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQP--NTISLSGVLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 213 -~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p--~~~t~~~ll~a~~~~g~~~~a~~i~ 285 (523)
....+++.+-. .|...|++++|.+.|++..+. +-.| ....+..+-..+...|++++|...+
T Consensus 63 ~~~~~~~~~l~~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (203)
T 3gw4_A 63 TAEHRALHQVGM------------VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130 (203)
T ss_dssp HHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 12245666766 888999999999999987653 2122 2345677777888899999999999
Q ss_pred HHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 286 ~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
....+..-..+.. ..-..++..+-..|...|+. ++|...|++..+.
T Consensus 131 ~~al~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 176 (203)
T 3gw4_A 131 EKSLVYAQQADDQ-----------VAIACAFRGLGDLAQQEKNL--LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccch-----------HHHHHHHHHHHHHHHHCcCH--HHHHHHHHHHHHH
Confidence 8887531111000 00123467788899999999 9999998877653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0014 Score=58.74 Aligned_cols=155 Identities=9% Similarity=-0.010 Sum_probs=119.8
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-------HHHHhhccC----ChHHHHHHHHHHHHhcCCCCceeHhHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------VYKACSELK----DHRVGKDVYDYMISIKFEGNACVKRPVL 137 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------ll~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~li 137 (523)
+..++..|-..|...+++++|+..|++..+.| +-..+.. + +.++|.+.+....+.| +...+..|-
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 67788888888989999999999999988877 4444445 6 8999999999998765 556777888
Q ss_pred HHHHh----cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC-CchhHHHHHHHHHHh----cCChHHHHHHHh
Q 035847 138 DMFIK----CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE-SDLLVNNSLMDFYAK----CRYLKVAHCKFS 208 (523)
Q Consensus 138 ~~~~~----~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~d~~~~~~li~~~~k----~g~~~~A~~vf~ 208 (523)
.+|.. .+++++|...|+++ .+. |.. .+...+..|-.+|.. .++.++|...|+
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A------------------~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDA------------------ARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHH------------------TSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHH------------------HHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 88887 88999999999982 222 221 126778888888888 789999999998
Q ss_pred cCCC--CChhhHHHHHHhhhhcCCccccchhhcc------CCchHHHHHHHHHHhcCC
Q 035847 209 KIKQ--KHLVSWNAMLAGYALGGFREEITGFTQY------GDGETALEFFSRMIQTDM 258 (523)
Q Consensus 209 ~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~------g~~~~A~~lf~~M~~~g~ 258 (523)
...+ .+..++..|-. .|.+. .+.++|+..|+.-.+.|.
T Consensus 154 ~A~~~~~~~~a~~~Lg~------------~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGM------------MFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHH------------HHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHH------------HHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7643 46667777766 44432 289999999999888774
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0013 Score=55.70 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=94.5
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
.+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+....+.. +.+...
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~~~~ 83 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----------------KKYIKG 83 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------cccHHH
Confidence 7888999999999999988753 2357778888888999999999999999988753 124567
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHH--HHHHHHHHhhCCHHHHHHHHHhC
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQY--CCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty--~~li~~~~~~g~~~~A~~~~~~m 377 (523)
|..+...|...|+. ++|...|+...+. .|+ ...+ -.+...+.+.|++++|...+.+.
T Consensus 84 ~~~~a~~~~~~~~~--~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 84 YYRRAASNMALGKF--RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 88888999999999 9999999998875 333 3344 33444477889999999987764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00081 Score=62.88 Aligned_cols=134 Identities=7% Similarity=-0.125 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN- 261 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~- 261 (523)
.++-.+...+...|++++|.++|+.+.. |+-.....+-. .+.+.+++++|+..|+...... .|.
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~------------l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAV------------VYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHH------------HHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHH------------HHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 3455677888899999999999999864 54444444444 6788999999999998554321 121
Q ss_pred -HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHH
Q 035847 262 -TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340 (523)
Q Consensus 262 -~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~ 340 (523)
...+..+-.++.+.|++++|...++........|.. ....+...-.++.+.|+. ++|..+|++
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~--------------~~da~~~~glaL~~lGr~--deA~~~l~~ 233 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC--------------ARAIAWYLAMARRSQGNE--SAAVALLEW 233 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT--------------HHHHHHHHHHHHHHHTCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc--------------cHHHHHHHHHHHHHcCCH--HHHHHHHHH
Confidence 235666777899999999999999988753321321 112345566678889999 999999999
Q ss_pred hHHhcCCccC
Q 035847 341 MKKEYNMEPA 350 (523)
Q Consensus 341 m~~~~g~~p~ 350 (523)
+... .|+
T Consensus 234 a~a~---~P~ 240 (282)
T 4f3v_A 234 LQTT---HPE 240 (282)
T ss_dssp HHHH---SCC
T ss_pred HHhc---CCc
Confidence 9875 455
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00058 Score=55.31 Aligned_cols=95 Identities=6% Similarity=-0.058 Sum_probs=62.9
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...+..+-..+...|+++.|...+....+.. ..+..+|..+...|.+.|++++|+..|++.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 80 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 33445555556666666666666666665432 1245556666666666666666666665554422
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+..++..+...|.+.|++++|...|++
T Consensus 81 --------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 81 --------------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34567888889999999999999999998
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0004 Score=56.32 Aligned_cols=110 Identities=9% Similarity=-0.055 Sum_probs=85.9
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 147 (523)
.+...|..+-..+.+.|++++|+..|++..... +.+..++..+...|.+.|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~la~~~~~~~~~~ 67 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------------------------PKDAKLYSNRAACYTKLLEFQ 67 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------------------------TTCHHHHHHHHHHHTTTTCHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCcHHHHHHHHHHHHHhccHH
Confidence 356788888999999999999999998876643 346778888999999999999
Q ss_pred HHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHH
Q 035847 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLA 223 (523)
Q Consensus 148 ~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~ 223 (523)
+|...|++ ... -...+..++..+...|.+.|++++|...|+...+ | +...|..+-.
T Consensus 68 ~A~~~~~~-------------------a~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 126 (133)
T 2lni_A 68 LALKDCEE-------------------CIQ-LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126 (133)
T ss_dssp HHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHH
T ss_pred HHHHHHHH-------------------HHH-hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999998 222 1233577888999999999999999999987643 3 3345555555
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00079 Score=54.12 Aligned_cols=119 Identities=13% Similarity=-0.018 Sum_probs=79.4
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccH
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gl 101 (523)
...+..+...+...|+++.|...+....+.. ..+...|..+...+...|++++|+..|.+.....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 76 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--------------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID- 76 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-
Confidence 3445555566666777777777777766543 2245566666667777777777777766655422
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC
Q 035847 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 181 (523)
+.+..++..+...|.+.|++++|...|++ ... -..
T Consensus 77 -------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------~~~-~~p 111 (131)
T 2vyi_A 77 -------------------------PAYSKAYGRMGLALSSLNKHVEAVAYYKK-------------------ALE-LDP 111 (131)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HST
T ss_pred -------------------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHH-------------------HHh-cCc
Confidence 34567788888999999999999999988 222 112
Q ss_pred CchhHHHHHHHHHHhcCCh
Q 035847 182 SDLLVNNSLMDFYAKCRYL 200 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~~ 200 (523)
.+...+..+...+.+.|+.
T Consensus 112 ~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 112 DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TCHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHhcC
Confidence 3556777777777776654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00048 Score=55.48 Aligned_cols=109 Identities=10% Similarity=-0.079 Sum_probs=83.3
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+...+...|++++|+..|++..... +.+..++..+...|...|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~ 64 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------------------------PANAVYFCNRAAAYSKLGNYAG 64 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------------------------CCCHHHHHHHHHHHHHhhchHH
Confidence 45567777777788888888888887765532 3467788889999999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHH
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLA 223 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~ 223 (523)
|...|++ ... -...+..++..+...|.+.|+.++|...|+...+ | +...+..+..
T Consensus 65 A~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 122 (131)
T 2vyi_A 65 AVQDCER-------------------AIC-IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122 (131)
T ss_dssp HHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHH-------------------HHh-cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 9999998 222 1233567888999999999999999999987643 3 5566777766
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00062 Score=57.42 Aligned_cols=137 Identities=9% Similarity=-0.019 Sum_probs=83.3
Q ss_pred HHhcCChHHHHHHHhcCCCC---ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHH
Q 035847 194 YAKCRYLKVAHCKFSKIKQK---HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVL 269 (523)
Q Consensus 194 ~~k~g~~~~A~~vf~~m~~~---~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll 269 (523)
+...|++++|...++..... +...|-.+-. .|.+.|++++|++.|++..+. .| +..+|..+-
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~------------~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg 72 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAK------------LYYEAKEYDLAKKYICTYINV--QERDPKAHRFLG 72 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHH------------HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 33456677777776655432 2234555555 667777777777777777663 34 456666677
Q ss_pred HHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHH-HHHhHHhcCCc
Q 035847 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY-FEMMKKEYNME 348 (523)
Q Consensus 270 ~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~-~~~m~~~~g~~ 348 (523)
..+...|++++|...+...++.. +-+...|..+-..|.+.|+. ++|.+. ++...+. .
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~~~~~~~--~~aa~~~~~~al~l---~ 130 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVELN-----------------PTQKDLVLKIAELLCKNDVT--DGRAKYWVERAAKL---F 130 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHHCSS--SSHHHHHHHHHHHH---S
T ss_pred HHHHHcCchHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHh---C
Confidence 77777777777777777776632 11345667777777777776 655544 4555443 4
Q ss_pred cC-HhHHHHHHHHHHhhCC
Q 035847 349 PA-MEQYCCMVDLLARAGQ 366 (523)
Q Consensus 349 p~-~~ty~~li~~~~~~g~ 366 (523)
|+ ...|...-..+.+.|+
T Consensus 131 P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 54 4555555555555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0032 Score=59.46 Aligned_cols=167 Identities=10% Similarity=-0.066 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh-------hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL-------VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~-------~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
..+...+..+...|++++|.+.++...+ +.. ..+..+.. .+...|++++|++.|++...
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~al~ 143 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAA------------YVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH------------HHHTSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHH------------HHhcCCCHHHHHHHHHHHHH
Confidence 3455677888999999999998875421 211 12333334 66778999999999999875
Q ss_pred cC---CCCC--HHHHHHHHHHhhccCChhHHHHHHHHHHHh-cCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCC
Q 035847 256 TD---MQPN--TISLSGVLAACAQVKGFKLGKEIHGYVLRH-HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329 (523)
Q Consensus 256 ~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~ 329 (523)
.. ..+. ..+|+.+-..|...|+.++|...+....+. ...++.. .....+|+.+-..|...|+.
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~-----------~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE-----------EFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-----------HHHHHHHHHHHHHHHHTTCH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc-----------cchHHHHHhHHHHHHHHhhH
Confidence 32 1222 457888888999999999999999998742 1111100 00125788899999999999
Q ss_pred chHHHHHHHHHhHHhc---CCccC-HhHHHHHHHHHHhhCCHHHH-HHHHHh
Q 035847 330 QKNEGWRYFEMMKKEY---NMEPA-MEQYCCMVDLLARAGQFDDT-LNFMKK 376 (523)
Q Consensus 330 ~~~~a~~~~~~m~~~~---g~~p~-~~ty~~li~~~~~~g~~~~A-~~~~~~ 376 (523)
++|..+|+...+.. +..+. ..+|..+-..|.+.|+.++| ...+++
T Consensus 213 --~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 213 --EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp --HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 99999999876531 11111 57888899999999999999 766665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.013 Score=55.73 Aligned_cols=213 Identities=8% Similarity=0.004 Sum_probs=141.8
Q ss_pred hHHHHHHHHhhhCCCCCCc-chHHHHHHhccCCC--ChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHH
Q 035847 4 KNVTLLLQSMDLTNPDECT-VTYALIFQRCPKLN--NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMY 80 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~ 80 (523)
++|+.+++.++.. .|+. ..|+.--.++...+ +++++...++.+.... ..+..+|+.--..+
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--------------Pk~y~aW~~R~~iL 113 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--------------EKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--------------TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--------------cccHHHHHHHHHHH
Confidence 4677777777664 4544 34565555666666 8999999999988765 34667777544444
Q ss_pred ----Hhc---CCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHH--HHHH
Q 035847 81 ----NVL---GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME--MASG 151 (523)
Q Consensus 81 ----~~~---g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~ 151 (523)
.+. +++++++++++.+.+.. +.+..+|+---..+.+.|.++ +++.
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~--------------------------pkny~aW~~R~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSD--------------------------PKNHHVWSYRKWLVDTFDLHNDAKELS 167 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhcccChHHHHH
Confidence 334 67788888888777654 556677777777777777777 7777
Q ss_pred HhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCC------hHHHHHHHhcCCC---CChhhHHHHH
Q 035847 152 EFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY------LKVAHCKFSKIKQ---KHLVSWNAML 222 (523)
Q Consensus 152 ~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~------~~~A~~vf~~m~~---~~~~t~~~li 222 (523)
.+++ +-. .-..|-..|+---....+.|. ++++.+.++.... .|...|+-+-
T Consensus 168 ~~~~-------------------~i~-~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~ 227 (306)
T 3dra_A 168 FVDK-------------------VID-TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLL 227 (306)
T ss_dssp HHHH-------------------HHH-HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHH-------------------HHH-hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 7777 222 123455566655555555555 6777777766542 4667888877
Q ss_pred HhhhhcCCccccchhhccCCchH-HHHHHHHHHhcC--CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 223 AGYALGGFREEITGFTQYGDGET-ALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 223 ~~~~~~g~~~~i~~~~~~g~~~~-A~~lf~~M~~~g--~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
. .+.+.|+..+ +.++..+....+ -..+...+..+...+.+.|+.++|.++++.+.+
T Consensus 228 ~------------ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 228 G------------IHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp H------------HHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H------------HHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7 5556666444 445666555432 134677888888888888999999999988875
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00027 Score=61.22 Aligned_cols=116 Identities=7% Similarity=0.050 Sum_probs=83.9
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~ 187 (523)
.|+++.|...+...++.. +.+..+|..+-..|...|++++|...|+++ ++. ...+...+
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------------l~~--~p~~~~~~ 81 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQA------------------LQL--RGENAELY 81 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--HCSCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHc--CCCCHHHH
Confidence 344555555555554442 446678889999999999999999999981 222 12356677
Q ss_pred HHHHHH-HHhcCCh--HHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 188 NSLMDF-YAKCRYL--KVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 188 ~~li~~-~~k~g~~--~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
..+... |.+.|+. ++|...|+...+ | +...|..+.. .|.+.|++++|...|++..+.
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS------------DAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHH------------HHHHcccHHHHHHHHHHHHhh
Confidence 777777 7788998 999999987653 4 4567777777 888999999999999998874
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0003 Score=59.36 Aligned_cols=130 Identities=7% Similarity=-0.066 Sum_probs=75.0
Q ss_pred CChHHHHHHHHHHHHhcCCC-CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH
Q 035847 109 KDHRVGKDVYDYMISIKFEG-NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~ 187 (523)
|+++.|.+.+...... .| +...+-.+-..|.+.|++++|...|+++ ++. -+-+..+|
T Consensus 11 ~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~a------------------l~~--~p~~~~a~ 68 (150)
T 4ga2_A 11 ADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTY------------------INV--QERDPKAH 68 (150)
T ss_dssp HHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHH
T ss_pred ChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHh--CCCCHHHH
Confidence 4444444444443322 22 2344556677777888888888887771 222 12246677
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHH-HHHHhcCCCCC-H
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF-SRMIQTDMQPN-T 262 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf-~~M~~~g~~p~-~ 262 (523)
..+-..|.+.|++++|...|+...+ | +...|..+-. .|.+.|+.++|.+.| +...+ +.|+ .
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~------------~~~~~~~~~~aa~~~~~~al~--l~P~~~ 134 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE------------LLCKNDVTDGRAKYWVERAAK--LFPGSP 134 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHHCSSSSHHHHHHHHHHH--HSTTCH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH------------HHHHcCChHHHHHHHHHHHHH--hCcCCH
Confidence 7777777788888888777776542 3 4456777766 667777776665543 55544 3343 3
Q ss_pred HHHHHHHHHhhc
Q 035847 263 ISLSGVLAACAQ 274 (523)
Q Consensus 263 ~t~~~ll~a~~~ 274 (523)
..|...-..+..
T Consensus 135 ~~~~l~~~ll~~ 146 (150)
T 4ga2_A 135 AVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 444443333333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00098 Score=51.95 Aligned_cols=97 Identities=15% Similarity=-0.019 Sum_probs=75.1
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..+.+.|++++|+..|++..+.. +.+..++..+-..|.+.|++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~ 58 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------------------------PEESKYWLMKGKALYNLERYEE 58 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------------------------cCCHHHHHHHHHHHHHccCHHH
Confidence 45677777888888888888888888766532 3456678888888999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCC--chhHHHHHHHHHHhc-CChHHHHHHHhcCC
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES--DLLVNNSLMDFYAKC-RYLKVAHCKFSKIK 211 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--d~~~~~~li~~~~k~-g~~~~A~~vf~~m~ 211 (523)
|...|++ ... -... +..++..+...|.+. |+.++|.+.|+...
T Consensus 59 A~~~~~~-------------------a~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 59 AVDCYNY-------------------VIN-VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHH-------------------HHH-TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHH-------------------HHH-hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999988 322 1122 577888888999999 99999999988764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00081 Score=58.09 Aligned_cols=120 Identities=11% Similarity=0.033 Sum_probs=84.8
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCCh
Q 035847 32 CPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111 (523)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~ 111 (523)
+...|+++.|...+....+.. ..+...|..+-..|...|++++|+..|++.....
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----------- 74 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--------------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR----------- 74 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred hhhccCHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------
Confidence 456677888888888777654 2366788888999999999999999998876643
Q ss_pred HHHHHHHHHHHHhcCCCCceeHhHHHHH-HHhcCCH--HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHH
Q 035847 112 RVGKDVYDYMISIKFEGNACVKRPVLDM-FIKCGRM--EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188 (523)
Q Consensus 112 ~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ 188 (523)
+.+...+..+... |.+.|++ ++|...|++ ... -...+...+.
T Consensus 75 ---------------p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~-------------------al~-~~p~~~~~~~ 119 (177)
T 2e2e_A 75 ---------------GENAELYAALATVLYYQASQHMTAQTRAMIDK-------------------ALA-LDSNEITALM 119 (177)
T ss_dssp ---------------CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH-------------------HHH-HCTTCHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH-------------------HHH-hCCCcHHHHH
Confidence 3355666677777 7788887 888888887 222 1123456777
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
.+...|.+.|+.++|...|+...
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 78888888888888888887653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00073 Score=57.17 Aligned_cols=97 Identities=11% Similarity=-0.079 Sum_probs=72.7
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..+.+.|++++|+..|++..... +.+...|..+-.+|.+.|++++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------------------------P~~~~~~~~lg~~~~~~g~~~~ 88 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------------------------FYNVDYIMGLAAIYQIKEQFQQ 88 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHHccHHH
Confidence 45567777778888888888888888877643 3467778888888888888888
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|...|+++ ++. -+.+...|..+-.+|.+.|+.++|...|+...
T Consensus 89 Ai~~~~~a------------------l~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 89 AADLYAVA------------------FAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHHHH------------------HHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------Hhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888881 222 12246677788888888888888888887653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0011 Score=51.57 Aligned_cols=97 Identities=10% Similarity=-0.098 Sum_probs=79.9
Q ss_pred CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
+..++..+...|.+.|++++|...|++ ... -...+..++..+-..|.+.|++++|...|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------a~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 64 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEK-------------------AIQ-LDPEESKYWLMKGKALYNLERYEEAVDCYN 64 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHH-------------------HHH-HCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHH-------------------HHH-hCcCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 456788888999999999999999998 222 123356788889999999999999999998
Q ss_pred cCCC--C---ChhhHHHHHHhhhhcCCccccchhhcc-CCchHHHHHHHHHHhcC
Q 035847 209 KIKQ--K---HLVSWNAMLAGYALGGFREEITGFTQY-GDGETALEFFSRMIQTD 257 (523)
Q Consensus 209 ~m~~--~---~~~t~~~li~~~~~~g~~~~i~~~~~~-g~~~~A~~lf~~M~~~g 257 (523)
...+ | +...|..+.. .+.+. |++++|.+.|++.....
T Consensus 65 ~a~~~~~~~~~~~~~~~l~~------------~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 65 YVINVIEDEYNKDVWAAKAD------------ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTSCCTTCHHHHHHHHH------------HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCcccchHHHHHHHHH------------HHHHHhCCHHHHHHHHHHHhhcc
Confidence 7642 4 4678888888 88999 99999999999998754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.03 Score=53.98 Aligned_cols=200 Identities=10% Similarity=0.023 Sum_probs=130.2
Q ss_pred CceeHhHHHHHHHhcC-CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhc-C-ChHHHHH
Q 035847 129 NACVKRPVLDMFIKCG-RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC-R-YLKVAHC 205 (523)
Q Consensus 129 ~~~~~~~li~~~~~~g-~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~-g-~~~~A~~ 205 (523)
+..+||.--..+...| .+++++.+++. +-. ...-+..+|+.--..+.+. + +.+++..
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~-------------------~L~-~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNE-------------------FAV-QNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHH-------------------HHH-TTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHH-------------------HHH-hCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4456777666667777 58999999988 333 2344566787777777666 6 8899999
Q ss_pred HHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCch--------HHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 035847 206 KFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGE--------TALEFFSRMIQTDMQPNTISLSGVLAACAQ 274 (523)
Q Consensus 206 vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~--------~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 274 (523)
+++.+.+ +|-.+|+---- .+.+.|.++ ++++.++++.+... -|...|+-.-..+.+
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~w------------vl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHW------------LYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHH------------HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCHHHHHHHHH------------HHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 9998876 45566765444 333334444 89999999998653 377788877777777
Q ss_pred cCC-------hhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCC------------------
Q 035847 275 VKG-------FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI------------------ 329 (523)
Q Consensus 275 ~g~-------~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~------------------ 329 (523)
.+. ++++.+.....+... .-|...|+-+-..+.+.|+.
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-----------------P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-----------------PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP 276 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 765 466666666666532 23566777766666666553
Q ss_pred chHHHHHHHHHhHHhc----CCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 330 QKNEGWRYFEMMKKEY----NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 330 ~~~~a~~~~~~m~~~~----g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
...+..++...+.... .-.++......|.+.|...|+.++|.++++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0022333333332210 013667888899999999999999999988873
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0018 Score=52.75 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=57.3
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
.+...-..|.+.|++++|...|+++ ++. -+.+..+|..+-.+|.+.|++++|...|+...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~a------------------l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEA------------------VKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------------------HHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 4455566677777777777777761 222 12245566666677777777777777766543
Q ss_pred C---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 212 Q---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 212 ~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
+ .+...|..+-. .|.+.|++++|++.|++..+
T Consensus 75 ~~~p~~~~a~~~lg~------------~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 75 RLDSKFIKGYIRKAA------------CLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHH------------HHHHCCCHHHHHHHHHHHHH
Confidence 2 34456666666 66667777777777776665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0072 Score=60.23 Aligned_cols=197 Identities=10% Similarity=-0.038 Sum_probs=132.3
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCC----CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc------
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMP----ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------ 100 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ 100 (523)
.+.+.|++++|.+.+..+.+..-....... ..... .....++..|...|.+.|++++|.+.+......-
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAA-GASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSS-SSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHH-HHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345678999999999998875421100000 00000 0001247789999999999999999998876421
Q ss_pred --------HHHH-hhccCChHHHHHHHHHHHHhc----CCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhh
Q 035847 101 --------VYKA-CSELKDHRVGKDVYDYMISIK----FEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166 (523)
Q Consensus 101 --------ll~~-~~~~~~~~~a~~~~~~m~~~g----~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 166 (523)
.+.. +...|+.+.+.+++....... ..+. ..++..|...|...|++++|..++++
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~----------- 160 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND----------- 160 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH-----------
Confidence 2222 335678899998888776532 1221 34677889999999999999999988
Q ss_pred HhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC-----hhhHHHHHHhhhhcCCccccc
Q 035847 167 GKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----KH-----LVSWNAMLAGYALGGFREEIT 235 (523)
Q Consensus 167 ~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----~~-----~~t~~~li~~~~~~g~~~~i~ 235 (523)
++....+. +-.+ ...++..++..|...|++++|...++.... ++ ...|..+..
T Consensus 161 ---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~------------ 224 (434)
T 4b4t_Q 161 ---LLREFKKL-DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGI------------ 224 (434)
T ss_dssp ---HHHHHTTS-SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH------------
T ss_pred ---HHHHHHhc-ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH------------
Confidence 22222222 2222 356889999999999999999999876531 22 134555666
Q ss_pred hhhccCCchHHHHHHHHHHh
Q 035847 236 GFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~ 255 (523)
.+...|++.+|...|.+..+
T Consensus 225 ~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 225 LHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 77888999999988877654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0011 Score=62.49 Aligned_cols=181 Identities=6% Similarity=-0.106 Sum_probs=104.2
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...+..+-..+.+.|+++.|...+....+.. ..+...|..+-..|.+.|++++|+..|++..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 68 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD 68 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34456666677778889999999988888764 2367788888888888999999999888876643
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccC-------ch----hhHhh
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS-------LL----KHGKE 169 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-------~~----~~~~~ 169 (523)
+.+...+..+-.+|.+.|++++|...|+++.-.... .+ ..+..
T Consensus 69 --------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 122 (281)
T 2c2l_A 69 --------------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122 (281)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHH
T ss_pred --------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHH
Confidence 223445555555666666666666666552100000 00 00000
Q ss_pred HhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChh-hHHHHHHhhhhcCCccccchhhcc-CCchH
Q 035847 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLV-SWNAMLAGYALGGFREEITGFTQY-GDGET 245 (523)
Q Consensus 170 ~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~-t~~~li~~~~~~g~~~~i~~~~~~-g~~~~ 245 (523)
.-...........+..+...+-.. ..|+.++|.+.++...+ |+-. ....+-. .+.+. +.+++
T Consensus 123 ~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~------------~~~~~~~~~~~ 188 (281)
T 2c2l_A 123 KRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQAC------------IEAKHDKYMAD 188 (281)
T ss_dssp HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHH------------HHHHHHHHHHH
Confidence 000001111334444444444332 26888888888877654 4332 2222222 23333 56788
Q ss_pred HHHHHHHHHh
Q 035847 246 ALEFFSRMIQ 255 (523)
Q Consensus 246 A~~lf~~M~~ 255 (523)
|.++|....+
T Consensus 189 a~~~f~~a~~ 198 (281)
T 2c2l_A 189 MDELFSQVDE 198 (281)
T ss_dssp HHHHHHHSSC
T ss_pred HHHHHHhhhc
Confidence 8999987765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.001 Score=64.48 Aligned_cols=127 Identities=9% Similarity=0.009 Sum_probs=94.3
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCC----------------ceeH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN----------------ACVK 133 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~ 133 (523)
...|..+-..|.+.|++++|+..|++.... .|+ ..+|
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---------------------------~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW---------------------------LEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------------TTTCCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------------------hhccccCChHHHHHHHHHHHHHH
Confidence 445666666666667777777666665442 233 3788
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ- 212 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~- 212 (523)
..+-..|.+.|++++|...|+++ ++. -..+...|..+-.+|.+.|++++|...|+...+
T Consensus 200 ~nla~~~~~~g~~~~A~~~~~~a------------------l~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 200 LNLAMCHLKLQAFSAAIESCNKA------------------LEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH------------------HHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999991 222 233677899999999999999999999988653
Q ss_pred -C-ChhhHHHHHHhhhhcCCccccchhhccCCchHH-HHHHHHHHh
Q 035847 213 -K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETA-LEFFSRMIQ 255 (523)
Q Consensus 213 -~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A-~~lf~~M~~ 255 (523)
| +...|..+-. .+.+.|+.++| ..+|+.|..
T Consensus 260 ~P~~~~a~~~l~~------------~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 260 YPNNKAAKTQLAV------------CQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CSSCHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4 5567888877 77788888888 456776653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.20 E-value=0.026 Score=57.72 Aligned_cols=167 Identities=11% Similarity=0.037 Sum_probs=99.2
Q ss_pred hHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-CChh-hHHHHHHhhhhcCCccccchhhccCCchHH
Q 035847 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHLV-SWNAMLAGYALGGFREEITGFTQYGDGETA 246 (523)
Q Consensus 169 ~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-~~~~-t~~~li~~~~~~g~~~~i~~~~~~g~~~~A 246 (523)
.++...+.. +..+..+|-..+..+.+.|+++.|..+|++... |+.. .|.... ...+.++.
T Consensus 200 ~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~~y~----------------~~~e~~~~ 261 (493)
T 2uy1_A 200 FIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYG----------------LVMDEEAV 261 (493)
T ss_dssp HHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHH----------------HHTTCTHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHHHHH----------------hhcchhHH
Confidence 344444554 234466787888888899999999999986432 4332 222211 11111221
Q ss_pred HHHHHHHHhcC---------CCC---CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcc
Q 035847 247 LEFFSRMIQTD---------MQP---NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF 314 (523)
Q Consensus 247 ~~lf~~M~~~g---------~~p---~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~ 314 (523)
++.+.+.- ..+ ....|...+...-+.+.++.|+++++.. +.. ..+. .+.
T Consensus 262 ---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~--------------~v~ 322 (493)
T 2uy1_A 262 ---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP--------------HVF 322 (493)
T ss_dssp ---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH--------------HHH
T ss_pred ---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh--------------HHH
Confidence 22222210 111 1244666666666678899999999988 311 0111 112
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.+.+.+.... .++. +.|..+|+...+.++-.| .-+...++...+.|+.+.|..+++..
T Consensus 323 i~~A~lE~~~-~~d~--~~ar~ife~al~~~~~~~--~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 323 IYCAFIEYYA-TGSR--ATPYNIFSSGLLKHPDST--LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHH-HCCS--HHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHH-CCCh--HHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2223333333 2358 999999999988754333 34566788888999999999999997
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0023 Score=52.25 Aligned_cols=99 Identities=11% Similarity=-0.048 Sum_probs=77.4
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 67 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
..+...|..+-..+.+.|++++|+..|.+..... +.+...|..+-..|.+.|++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~l~~~~~~~~~~ 59 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------------------------PLVAVYYTNRALCYLKMQQP 59 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------------------------cCcHHHHHHHHHHHHHhcCH
Confidence 3467788888888999999999999998876643 34567888888899999999
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
++|...|+++ ++. ...+...+..+-..|.+.|++++|...|+...
T Consensus 60 ~~A~~~~~~a------------------l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 60 EQALADCRRA------------------LEL--DGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------------------HHh--CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999881 222 12356788888889999999999998888654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0017 Score=54.84 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=80.5
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHH
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll 102 (523)
..+..+-..+.+.|++++|...+....+.. ..+...|..+-..|.+.|++++|+..|++.....
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-- 100 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-- 100 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--
Confidence 456666677889999999999999999875 3478899999999999999999999999987743
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+...|..+-.+|.+.|++++|...|++
T Consensus 101 ------------------------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 101 ------------------------KNDYTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp ------------------------SSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44677888999999999999999999998
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0019 Score=50.76 Aligned_cols=97 Identities=8% Similarity=-0.102 Sum_probs=71.3
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
...|..+...+...|++++|+..|++..... +.+...+..+...|.+.|++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~A 57 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------------------------PHNHVLYSNRSAAYAKKGDYQKA 57 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------------------------CCcHHHHHHHHHHHHhhccHHHH
Confidence 3456666677777777777777777665432 34667788888889999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
...+++ ... -...+..++..+...|.+.|+.++|...|+...+
T Consensus 58 ~~~~~~-------------------~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 58 YEDGCK-------------------TVD-LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHH-------------------HHH-hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999988 222 1223567788888899999999999999887543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0046 Score=48.42 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=77.5
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccH
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gl 101 (523)
...+..+...+...|+++.|...+....... ..+...|..+...|.+.|++++|+..+++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 68 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK- 68 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-
Confidence 3456667777888999999999999998764 2367788888889999999999999998876643
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+...+..+...|.+.|++++|...|++
T Consensus 69 -------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 69 -------------------------PDWGKGYSRKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34567788889999999999999999988
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0014 Score=55.11 Aligned_cols=97 Identities=10% Similarity=-0.055 Sum_probs=73.4
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..+.+.|++++|+..|++..... +.+...|..+-.+|.+.|++++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~ 73 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------------------------HYDSRFFLGLGACRQAMGQYDL 73 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------------------cccHHHHHHHHHHHHHHhhHHH
Confidence 45567777778888888888888888776543 4467778888888999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|...|+++ +.. -+.+...+..+-.+|...|+.++|...|+...
T Consensus 74 A~~~~~~a------------------l~l--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 74 AIHSYSYG------------------AVM--DIXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHH------------------HHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------Hhc--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999881 222 12346677888888999999999998888654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0032 Score=51.18 Aligned_cols=95 Identities=9% Similarity=-0.029 Sum_probs=70.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS 150 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 150 (523)
..|...=..|.+.|++++|++.|++..+.. +.+..+|..+-.+|.+.|++++|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~~~~~~~~~~~~~A~ 67 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------------------------PENAILYSNRAACLTKLMEFQRAL 67 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHhhHHHhhccHHHHH
Confidence 456666666777777777777777665532 446778888889999999999999
Q ss_pred HHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 151 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
..|+++ ++. -..+...|..+-.+|.+.|++++|...|+...
T Consensus 68 ~~~~~a------------------l~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 68 DDCDTC------------------IRL--DSKFIKGYIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH------------------HHh--hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999881 222 12346788888899999999999999998754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0047 Score=59.77 Aligned_cols=129 Identities=9% Similarity=-0.045 Sum_probs=104.9
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHhhccCChhH
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN--------------TISLSGVLAACAQVKGFKL 280 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~--------------~~t~~~ll~a~~~~g~~~~ 280 (523)
...|..+-. .|.+.|++++|+..|++..+..-... ...|..+-.++.+.|++++
T Consensus 147 a~~~~~~g~------------~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 147 STIVKERGT------------VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp HHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 446777777 88899999999999999887532211 4788888899999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHH
Q 035847 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVD 359 (523)
Q Consensus 281 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~ 359 (523)
|.+.++..++.. +.+...|..+-.+|...|+. ++|...|+...+. .|+ ...+..+..
T Consensus 215 A~~~~~~al~~~-----------------p~~~~a~~~lg~~~~~~g~~--~~A~~~~~~al~l---~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 215 AIESCNKALELD-----------------SNNEKGLSRRGEAHLAVNDF--ELARADFQKVLQL---YPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----------------CCcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 999999998742 22567888999999999999 9999999998865 454 678888889
Q ss_pred HHHhhCCHHHH-HHHHHhC
Q 035847 360 LLARAGQFDDT-LNFMKKM 377 (523)
Q Consensus 360 ~~~~~g~~~~A-~~~~~~m 377 (523)
++.+.|+.++| ..++++|
T Consensus 273 ~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 99999999998 4456655
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0019 Score=53.61 Aligned_cols=96 Identities=10% Similarity=-0.088 Sum_probs=71.4
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
...+..+-..+.+.|++++|+..|++..... +.+...|..+-..|.+.|++++|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~A 71 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--------------------------HYDARYFLGLGACRQSLGLYEQA 71 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------------------------CccHHHHHHHHHHHHHHhhHHHH
Confidence 4455566667777888888888887766543 44677788888889999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
...|+++ +.. -+.+...+..+-.+|...|+.++|...|+...
T Consensus 72 ~~~~~~a------------------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 72 LQSYSYG------------------ALM--DINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHH------------------HHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH------------------Hhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999881 222 12345677788888999999999999988754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0017 Score=52.10 Aligned_cols=104 Identities=8% Similarity=0.067 Sum_probs=80.4
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
..+..+...|...|+++.|...|++ ... ....+..++..+...|.+.|++++|...|+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~-------------------a~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDK-------------------AKE-LDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-------------------HHh-cCCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4567788889999999999999998 222 12346778889999999999999999999876
Q ss_pred CC--C-C-------hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHH
Q 035847 211 KQ--K-H-------LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268 (523)
Q Consensus 211 ~~--~-~-------~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 268 (523)
.+ | + ..+|..+.. .|.+.|++++|.+.|++..+. .|+......+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~la~------------~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 65 IEVGRENREDYRQIAKAYARIGN------------SYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HhhccccchhHHHHHHHHHHHHH------------HHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 53 2 2 556777777 888999999999999998875 3565444444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.015 Score=57.91 Aligned_cols=186 Identities=6% Similarity=-0.071 Sum_probs=124.1
Q ss_pred HHHHhcCCchHHHHHHHHhhHcc--------------------------HHHHhhccCChHHHHHHHHHHHHhcC-CCCc
Q 035847 78 GMYNVLGYYEEIVNLFYLLIDEG--------------------------VYKACSELKDHRVGKDVYDYMISIKF-EGNA 130 (523)
Q Consensus 78 ~~~~~~g~~~~A~~l~~~m~~~g--------------------------ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~ 130 (523)
..+.+.|++++|++.|.+..+.. +...|...|++++|.+.+....+.-- .++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45677899999999998876532 56677777888888877776654311 1111
Q ss_pred ----eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHH
Q 035847 131 ----CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHC 205 (523)
Q Consensus 131 ----~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~ 205 (523)
.+.+.+-..+...|+.+.|..++.++ .....+. +..+ -..++..|...|...|++++|..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKS--------------IEFAKRE-KRVFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHH--------------HHHHHHS-SCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------------HHHHHHh-CccHHHHHHHHHHHHHHHHccChHHHHH
Confidence 12233333444557777777777661 1111122 3333 35678889999999999999999
Q ss_pred HHhcCC--------CCC-hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc--CC-CC-C--HHHHHHHHH
Q 035847 206 KFSKIK--------QKH-LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT--DM-QP-N--TISLSGVLA 270 (523)
Q Consensus 206 vf~~m~--------~~~-~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~--g~-~p-~--~~t~~~ll~ 270 (523)
+++... .+. +..|..++. .|...|++++|..+++..... .+ .| . ...+..+..
T Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 224 (434)
T 4b4t_Q 157 LINDLLREFKKLDDKPSLVDVHLLESK------------VYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGI 224 (434)
T ss_dssp HHHHHHHHHTTSSCSTHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHH------------HHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Confidence 988653 122 246788888 889999999999999887642 12 12 1 245666677
Q ss_pred HhhccCChhHHHHHHHHHHH
Q 035847 271 ACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 271 a~~~~g~~~~a~~i~~~~~~ 290 (523)
.+...++.+.|...+....+
T Consensus 225 ~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 225 LHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 78889999999988777654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0056 Score=50.96 Aligned_cols=125 Identities=12% Similarity=-0.016 Sum_probs=91.2
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------------HHHHhhccCChHHHHHHHHHHHHhcCC-CC----
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------------VYKACSELKDHRVGKDVYDYMISIKFE-GN---- 129 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------------ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~---- 129 (523)
..+|..+-..|...|++++|+..|++..... +-..+...|++++|.+.+....+..-. ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3567788888899999999999998765432 566667889999999999887764311 11
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC-CchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE-SDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
..++..+-..|...|++++|...|+++ .++. .+. +.. ....++..+-..|...|+.++|...++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a-----------~~~~---~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKH-----------LAIA---QEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHH---HHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH-----------HHHH---HHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 446777888899999999999999881 1111 111 211 124567888889999999999998887
Q ss_pred c
Q 035847 209 K 209 (523)
Q Consensus 209 ~ 209 (523)
+
T Consensus 154 ~ 154 (164)
T 3ro3_A 154 K 154 (164)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.01 Score=48.25 Aligned_cols=96 Identities=6% Similarity=-0.118 Sum_probs=81.2
Q ss_pred CCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc
Q 035847 20 ECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE 99 (523)
Q Consensus 20 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 99 (523)
.+...|..+-..+...|+++.|...+....+.. ..+...|..+-..|.+.|++++|+..|++....
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356678888888899999999999999988865 236788999999999999999999999887764
Q ss_pred cHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 100 GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 100 gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
. +.+..++..+-..|.+.|++++|...|++
T Consensus 73 ~--------------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 73 D--------------------------GQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp C--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C--------------------------chhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3 34567888899999999999999999988
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0028 Score=50.83 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=71.8
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHH
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll 102 (523)
..+..+-..+...|+++.|...+....+.. ..+...|..+...|.+.|++++|+..|++.....
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-- 68 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--------------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-- 68 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--
Confidence 345666667778888888888888887764 2356778888888888888888888887765532
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCC----ceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGN----ACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
. ...++ ..++..+...|.+.|++++|...|++
T Consensus 69 -------------------~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 69 -------------------R--ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp -------------------H--HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------c--ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 0 00122 56778888999999999999999998
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0048 Score=49.65 Aligned_cols=95 Identities=8% Similarity=-0.077 Sum_probs=69.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS 150 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 150 (523)
..|..+-..+.+.|++++|+..|++..+.. +.+...|..+-..|.+.|++++|.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~a~~~~~~~~~~~A~ 58 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------------------------PEDARGYSNRAAALAKLMSFPEAI 58 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------CCChHHHHHHHHHHHHhcCHHHHH
Confidence 345555556666677777777666655432 446778888999999999999999
Q ss_pred HHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 151 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
..|+++ ++. -..+...|..+-.+|.+.|+.++|...|+...
T Consensus 59 ~~~~~a------------------l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 59 ADCNKA------------------IEK--DPNFVRAYIRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH------------------HHh--CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999881 222 12346788888899999999999999888653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0026 Score=51.76 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=77.0
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
.+..|-..|.+.|++++|...|+++ ++. -+.+..+|+.+-.+|.+.|++++|...|+...
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~A------------------l~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKA------------------IEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------------------HHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 4566778899999999999999981 222 12357788999999999999999999998764
Q ss_pred C--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHH
Q 035847 212 Q--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267 (523)
Q Consensus 212 ~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ 267 (523)
+ | +...|..+..+|.+.|. .+...|++++|++.|++-... .||..+...
T Consensus 70 ~~~~~~~~~~~~~a~~~~~lg~-----~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 70 EVGRETRADYKLIAKAMSRAGN-----AFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHH-----HHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HhCcccchhhHHHHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 3 2 22223333333333333 778899999999999987763 466555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0049 Score=51.67 Aligned_cols=89 Identities=13% Similarity=0.009 Sum_probs=61.8
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
.+.+.|++++|+..|+...... +.+...|..+-.++...|++++|.+.++..++.. +.+...
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----------------p~~~~~ 91 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-----------------IXEPRF 91 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------TTCTHH
T ss_pred HHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----------------CCCchH
Confidence 6677788888888888776642 1255666666667777788888888777776632 124456
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
|..+-.+|...|+. ++|...|+...+.
T Consensus 92 ~~~lg~~~~~~g~~--~~A~~~~~~al~~ 118 (148)
T 2vgx_A 92 PFHAAECLLQXGEL--AEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHH
Confidence 66777777777887 7788777777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.003 Score=53.72 Aligned_cols=97 Identities=12% Similarity=-0.069 Sum_probs=76.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..+.+.|++++|+..|++..+.. +.+...|..+-..|.+.|++++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~g~~~~ 63 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------------------------PANPIYLSNRAAAYSASGQHEK 63 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CcCHHHHHHHHHHHHHccCHHH
Confidence 45567777778888888888888887766532 3467788889999999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|...|+++ ++. -..+...|..+-..|.+.|++++|...|+...
T Consensus 64 A~~~~~~a------------------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 64 AAEDAELA------------------TVV--DPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------HHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999981 222 12347788899999999999999999998764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0058 Score=50.30 Aligned_cols=97 Identities=12% Similarity=0.020 Sum_probs=77.0
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCC----ceeHhHHHHHHHhc
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN----ACVKRPVLDMFIKC 143 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~ 143 (523)
.+...|..+-..+.+.|++++|+..|++..+. .|+ ..++..+-..|.+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---------------------------~~~~~~~~~~~~~~a~~~~~~ 78 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL---------------------------DATPQDQAVLHRNRAACHLKL 78 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---------------------------CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---------------------------cccchHHHHHHHHHHHHHHHH
Confidence 35677888888889999999999999887653 455 57788888899999
Q ss_pred CCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 144 GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 144 g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|++++|...|++ ... -...+...+..+...|.+.|+.++|...|+...
T Consensus 79 ~~~~~A~~~~~~-------------------~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 79 EDYDKAETEASK-------------------AIE-KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp TCHHHHHHHHHH-------------------HHH-HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH-------------------HHh-hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999988 222 112356778888899999999999999998754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0065 Score=50.53 Aligned_cols=129 Identities=14% Similarity=0.059 Sum_probs=93.1
Q ss_pred hhhccCCchHHHHHHHHHHhcCCC-CC----HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCC
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQ-PN----TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 310 (523)
.|...|++++|+..|++..+.... ++ ..++..+-..+...|++++|.+.+....+..-..+.. .
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----------~ 86 (164)
T 3ro3_A 18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-----------A 86 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------H
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc-----------H
Confidence 778899999999999987653111 12 1467777788889999999999998887632110000 0
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc---CCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 311 TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY---NMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 311 p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~---g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
....++..+-..|...|+. ++|..+++...+.. +..+. ...+..+...+...|++++|.+.+++.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDY--EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 0134677888899999999 99999998876431 21122 456778888999999999999998763
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0063 Score=48.93 Aligned_cols=92 Identities=13% Similarity=0.016 Sum_probs=62.6
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
.+..+-..+.+.|++++|...|+++ ++. ...+...|..+-.+|.+.|++++|...|+...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~a------------------l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEM------------------IKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 65 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH------------------HHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4555666777788888888888771 222 12346677777777888888888887777654
Q ss_pred C--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 212 Q--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 212 ~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
+ | +...|..+-. .+...|++++|++.|++..+
T Consensus 66 ~~~p~~~~~~~~lg~------------~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 66 EKDPNFVRAYIRKAT------------AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHH------------HHHHHhCHHHHHHHHHHHHH
Confidence 2 3 4456666666 77777888888888877765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0049 Score=51.05 Aligned_cols=93 Identities=9% Similarity=0.039 Sum_probs=77.2
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHH
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll 102 (523)
..+..+-..+.+.|+++.|...+....... ..+...|..+-..|.+.|++++|+..|++.....
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 82 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--------------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-- 82 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 345555567778999999999999998865 2477889999999999999999999999877643
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+...+..+-.+|...|++++|...|++
T Consensus 83 ------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 83 ------------------------INEPRFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp ------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44667788888999999999999999988
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0049 Score=57.95 Aligned_cols=175 Identities=7% Similarity=-0.076 Sum_probs=104.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCC
Q 035847 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~ 259 (523)
+...+..+-..|.+.|++++|...|+... .| +...|..+-. .|.+.|++++|+..|++..+. .
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~------------~~~~~~~~~~A~~~~~~al~~--~ 68 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRAL------------CYLKMQQPEQALADCRRALEL--D 68 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHTTS--C
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHH------------HHHHhcCHHHHHHHHHHHHHh--C
Confidence 34566677778888888888888887654 24 5567777777 777888888888888887764 3
Q ss_pred C-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC----chHHHHhHHHhhh---------CCCCCcchHHHHHHHHHh
Q 035847 260 P-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ----LSTGVGIALISIQ---------GLGTGSFVWNSLIDMYGR 325 (523)
Q Consensus 260 p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~----~~~~~~~~li~~y---------~~~p~~~~~n~li~~~~~ 325 (523)
| +...+..+-.++...|+.++|...+....+..-. ....++..+-... ...|+.......+..+.
T Consensus 69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~- 147 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI- 147 (281)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-
Confidence 4 4566777777888888888888888777663210 0111111111100 11222222233333332
Q ss_pred cCCCchHHHHHHHHHhHHhcCCccCHhH-HHHHHHHHHhh-CCHHHHHHHHHhC
Q 035847 326 CGAIQKNEGWRYFEMMKKEYNMEPAMEQ-YCCMVDLLARA-GQFDDTLNFMKKM 377 (523)
Q Consensus 326 ~g~~~~~~a~~~~~~m~~~~g~~p~~~t-y~~li~~~~~~-g~~~~A~~~~~~m 377 (523)
.|+. ++|.+.++... ...|+... ...+-..+.+. +.+++|.++|.+.
T Consensus 148 ~~~~--~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 148 AAER--ERELEECQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHH--HHHHTTTSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHH--HHHHHHHHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566 77777666554 33555433 23333334443 5677788887765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0038 Score=54.99 Aligned_cols=94 Identities=12% Similarity=-0.001 Sum_probs=63.0
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
.+|..+-..|.+.|++++|...|++ ... -...+...+..+-.+|.+.|++++|...|+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~-------------------al~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASK-------------------VLK-IDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-------------------HHH-hCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 6778888999999999999999998 222 12345778888999999999999999999876
Q ss_pred C--CC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHH-HHHHHHHhc
Q 035847 211 K--QK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETAL-EFFSRMIQT 256 (523)
Q Consensus 211 ~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~-~lf~~M~~~ 256 (523)
. .| +...+..+-. .+...++..++. ..|..|...
T Consensus 149 l~~~p~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYEL------------CVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHSTTCHHHHHHHHH------------HHHHHHHHHC------------
T ss_pred HHHCCCcHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhcc
Confidence 4 24 4556666666 555555555555 455555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.02 Score=48.43 Aligned_cols=89 Identities=13% Similarity=0.038 Sum_probs=60.5
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
.+.+.|++++|++.|++..+.. .-+...|..+-.++.+.|++++|...++..++.. +.+...
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~ 81 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-----------------PKYSKA 81 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------CCCHHH
Confidence 6777788888888888777642 1245666666677777777777777777776642 123456
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
|..+-..|...|+. ++|...|+...+.
T Consensus 82 ~~~lg~~~~~~g~~--~~A~~~~~~al~~ 108 (164)
T 3sz7_A 82 WSRLGLARFDMADY--KGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCH--HHHHHHHHHHHHh
Confidence 66777777777777 7777777776654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.011 Score=60.30 Aligned_cols=129 Identities=6% Similarity=-0.151 Sum_probs=94.1
Q ss_pred HHHhhccCChHHHHHHHHHHHHhc---CCCC----ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhh
Q 035847 102 YKACSELKDHRVGKDVYDYMISIK---FEGN----ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~ 174 (523)
+..+...|++++|..++.+.++.. +.|+ ..+++.|...|...|++++|..++++ +..+....
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~-----------aL~i~~~~ 384 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR-----------MVDGYMKL 384 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHH
Confidence 344567899999999998887642 2332 45899999999999999999999998 33333332
Q ss_pred hhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCC---hh-hHHHHHHhhhhcCCccccchhhccCC
Q 035847 175 LKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIK-------QKH---LV-SWNAMLAGYALGGFREEITGFTQYGD 242 (523)
Q Consensus 175 ~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~-------~~~---~~-t~~~li~~~~~~g~~~~i~~~~~~g~ 242 (523)
.-. -.|+ ..+++.|-..|...|++++|..++++.. -|| +. +.+.+-. ++...+.
T Consensus 385 lG~--~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~------------~~~e~~~ 450 (490)
T 3n71_A 385 YHH--NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQ------------TEMELRM 450 (490)
T ss_dssp SCT--TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH------------HHHHHHH
T ss_pred cCC--CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH------------HHHHHHH
Confidence 222 2344 5688999999999999999999888653 133 32 3444444 6677888
Q ss_pred chHHHHHHHHHHh
Q 035847 243 GETALEFFSRMIQ 255 (523)
Q Consensus 243 ~~~A~~lf~~M~~ 255 (523)
+.+|..+|..+++
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0029 Score=64.50 Aligned_cols=141 Identities=10% Similarity=0.029 Sum_probs=98.4
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC-cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCC
Q 035847 32 CPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN-VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110 (523)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~ 110 (523)
+-..|++++|..++++.....-. +|.. ..|+ ..++|.|...|...|++++|..++++...
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~------~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------ 379 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEP------VFAD-TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD------------ 379 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTT------TBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHH------hcCC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------
Confidence 44789999999999888753210 0000 0233 46899999999999999999999987543
Q ss_pred hHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHH
Q 035847 111 HRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNN 188 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~ 188 (523)
++....-.. .|+ ..+++.|-..|...|++++|..++++ +..+.....-. . .|+ ..+.+
T Consensus 380 ------i~~~~lG~~-Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~-----------Al~i~~~~lG~-~-Hp~~~~~~~ 439 (490)
T 3n71_A 380 ------GYMKLYHHN-NAQLGMAVMRAGLTNWHAGHIEVGHGMICK-----------AYAILLVTHGP-S-HPITKDLEA 439 (490)
T ss_dssp ------HHHHHSCTT-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHHTCT-T-SHHHHHHHH
T ss_pred ------HHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-----------HHHHHHHHhCC-C-ChHHHHHHH
Confidence 333322111 222 45788999999999999999999998 34444433322 1 233 44667
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
.|-.++...|..++|+.++..++
T Consensus 440 ~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 440 MRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999999998875
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.044 Score=44.78 Aligned_cols=99 Identities=7% Similarity=0.055 Sum_probs=75.7
Q ss_pred CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC----HHHHHHHHHHhhccCChhHHHHHHHHH
Q 035847 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN----TISLSGVLAACAQVKGFKLGKEIHGYV 288 (523)
Q Consensus 213 ~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~i~~~~ 288 (523)
.+...|..+-. .+.+.|++++|++.|++..+. .|+ ...+..+-.++...|++++|.+.+...
T Consensus 26 ~~~~~~~~~a~------------~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 91 (148)
T 2dba_A 26 SSVEQLRKEGN------------ELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91 (148)
T ss_dssp CCHHHHHHHHH------------HHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------HHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 35566777777 888899999999999998774 466 566777777788888888888888887
Q ss_pred HHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 289 ~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
.+.. +.+...|..+-..|...|+. ++|...|++..+.
T Consensus 92 ~~~~-----------------~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~ 128 (148)
T 2dba_A 92 IEKD-----------------GGDVKALYRRSQALEKLGRL--DQAVLDLQRCVSL 128 (148)
T ss_dssp HHHT-----------------SCCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH
T ss_pred HhhC-----------------ccCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHc
Confidence 7642 12445677777888888888 8888888887754
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0054 Score=49.34 Aligned_cols=95 Identities=9% Similarity=-0.112 Sum_probs=70.7
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
...|-.+-..+.+.|++++|+..|++..+.. +.+...|..+-..+.+.|++++|
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A 70 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKE--------------------------PEREEAWRSLGLTQAENEKDGLA 70 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445566677788888888888888776643 34667778888888888999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
...|+++ ++. .| +...+..+-..|.+.|+.++|...|+...
T Consensus 71 ~~~~~~a------------------l~l---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 71 IIALNHA------------------RML---DPKDIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHH------------------HHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------HHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9888881 222 33 45677888888888899999988888654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.042 Score=55.87 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=89.8
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF 314 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~ 314 (523)
.+.+.|++++|++.|++..+. .| +..+|..+-.++.+.|++++|.+.++..++.. +.+..
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----------------p~~~~ 75 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----------------KKYIK 75 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----------------TTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------CCCHH
Confidence 677899999999999998875 44 47788889899999999999999999998742 22456
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHH--HHhhCCHHHHHHHHH
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDL--LARAGQFDDTLNFMK 375 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~--~~~~g~~~~A~~~~~ 375 (523)
.|..+-.+|...|+. ++|.+.|++..+. .|+ ...+..+-.+ +.+.|++++|.+.++
T Consensus 76 ~~~~lg~~~~~~g~~--~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 76 GYYRRAASNMALGKF--RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHTCH--HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 788899999999999 9999999998875 343 3445445444 788899999999988
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.011 Score=51.94 Aligned_cols=129 Identities=12% Similarity=0.007 Sum_probs=85.1
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCC---C-----------cchHHHHHHHHHhcCCchHH
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPER---N-----------VFSWTSMMGMYNVLGYYEEI 89 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~---~-----------~~~~~~li~~~~~~g~~~~A 89 (523)
.+..+-..+.+.|+++.|...+....+.... .+ . ..+|..+-..|.+.|++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 107 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIH------------TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKA 107 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT------------CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4555566777899999999999998875320 11 1 15666777777777777777
Q ss_pred HHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhh
Q 035847 90 VNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169 (523)
Q Consensus 90 ~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~ 169 (523)
+..|++..... +.+..++..+-.+|...|++++|...|+++
T Consensus 108 ~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------- 148 (198)
T 2fbn_A 108 IDHASKVLKID--------------------------KNNVKALYKLGVANMYFGFLEEAKENLYKA------------- 148 (198)
T ss_dssp HHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHcccHHHHHHHHHHH-------------
Confidence 77777665432 345678888889999999999999999881
Q ss_pred HhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHH-HHHhcC
Q 035847 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAH-CKFSKI 210 (523)
Q Consensus 170 ~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~-~vf~~m 210 (523)
++. ...+..++..+...+.+.++.+++. ..|..|
T Consensus 149 -----l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 149 -----ASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp -----HHH--STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred -----HHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 1224567777777777777766665 444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0049 Score=62.87 Aligned_cols=120 Identities=13% Similarity=0.001 Sum_probs=88.6
Q ss_pred HHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhc
Q 035847 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSE 107 (523)
Q Consensus 28 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~ 107 (523)
+-..+.+.|++++|...+++..+.. ..+..+|..+-..|.+.|++++|++.|++..+..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------- 70 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN--------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD------- 70 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------
Confidence 3345667899999999999988764 2367889999999999999999999998877643
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhH
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLV 186 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~ 186 (523)
+.+..+|..+-.+|.+.|++++|.+.|+++ ++. .| +...
T Consensus 71 -------------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a------------------l~~---~p~~~~~ 110 (477)
T 1wao_1 71 -------------------KKYIKGYYRRAASNMALGKFRAALRDYETV------------------VKV---KPHDKDA 110 (477)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------HHH---STTCTTH
T ss_pred -------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHh---CCCCHHH
Confidence 345678888999999999999999999981 222 22 2334
Q ss_pred HHHHHHH--HHhcCChHHHHHHHh
Q 035847 187 NNSLMDF--YAKCRYLKVAHCKFS 208 (523)
Q Consensus 187 ~~~li~~--~~k~g~~~~A~~vf~ 208 (523)
+..+-.+ +.+.|++++|.+.++
T Consensus 111 ~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 111 KMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 4444444 888899999999998
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0048 Score=49.09 Aligned_cols=104 Identities=8% Similarity=0.105 Sum_probs=70.1
Q ss_pred ccCCchHHHHHHHHHHhcCC-CC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchH
Q 035847 239 QYGDGETALEFFSRMIQTDM-QP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVW 316 (523)
Q Consensus 239 ~~g~~~~A~~lf~~M~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~ 316 (523)
..|++++|+..|++..+.+. .| +...+..+-..+...|++++|.+.++..++..- .+...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~ 64 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-----------------NHQALR 64 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CchHHH
Confidence 35788899999999887541 13 346677777788889999999999988887531 244577
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHH
Q 035847 317 NSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361 (523)
Q Consensus 317 n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~ 361 (523)
..+-.+|...|+. ++|...|+.......-.|+...|...+..+
T Consensus 65 ~~l~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 65 VFYAMVLYNLGRY--EQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHTCH--HHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHcCCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 7888888999999 999999988776533333344444433333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0093 Score=47.90 Aligned_cols=92 Identities=9% Similarity=-0.133 Sum_probs=76.3
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHH
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK 103 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~ 103 (523)
.+..+-..+.+.|+++.|...++..++.. ..+...|..+-..+.+.|++++|+..|++..+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--- 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--------------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--- 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 34445566778999999999999998864 2477889999999999999999999999877643
Q ss_pred HhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+-+...+..+-..|.+.|++++|...|++
T Consensus 82 -----------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 82 -----------------------PKDIAVHAALAVSHTNEHNANAALASLRA 110 (121)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33566888888999999999999999988
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0095 Score=48.30 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC--C
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--M 258 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g--~ 258 (523)
...+.-|-..|.+.|++++|...|++..+ | +...|+.+-. .|.+.|++++|++.|++..+.. .
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~------------~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAA------------VYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHH------------HHHHhhhHHHHHHHHHHHHHhCccc
Confidence 34566777889999999999999987642 4 5678888888 8899999999999999887632 1
Q ss_pred CCC----HHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 259 QPN----TISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 259 ~p~----~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
.++ ..+|..+-.++...|+++.|.+.+...++..
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 222 2356677778888999999999999887743
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.11 Score=49.92 Aligned_cols=217 Identities=11% Similarity=-0.001 Sum_probs=126.2
Q ss_pred ChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcC-CchHHHHHHHHhhHcc------------HHH
Q 035847 37 NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLG-YYEEIVNLFYLLIDEG------------VYK 103 (523)
Q Consensus 37 ~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g------------ll~ 103 (523)
..++|..+.+.++.... .+..+||.-=..+...| .+++++++++.+.... ++.
T Consensus 69 ~se~AL~lt~~~L~~nP--------------~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 69 KSERALELTEIIVRMNP--------------AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp CSHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCc--------------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34567777777776542 34566776555555566 4778888887777654 333
Q ss_pred HhhccC-ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHH--------HHHHHhhhccccccCchhhHhhHhhhh
Q 035847 104 ACSELK-DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME--------MASGEFEEKDFSNLSLLKHGKEIHPHH 174 (523)
Q Consensus 104 ~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~f~~~~~~~~~~~~~~~~~~~~~ 174 (523)
.+. + +.+++.++++.+++.. +.|..+|+---..+.+.|.++ +++..+++ +
T Consensus 135 ~l~--~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k------------------~ 193 (349)
T 3q7a_A 135 RIS--PQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE------------------M 193 (349)
T ss_dssp HHC--CSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH------------------H
T ss_pred Hhc--CCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHH------------------H
Confidence 331 3 5677777777776542 446667776655555555555 67776666 2
Q ss_pred hhcCCCCCchhHHHHHHHHHHhcCC-------hHHHHHHHhcCC--C-CChhhHHHHHHhhhhcCCccc-----cchhhc
Q 035847 175 LKKDDLESDLLVNNSLMDFYAKCRY-------LKVAHCKFSKIK--Q-KHLVSWNAMLAGYALGGFREE-----ITGFTQ 239 (523)
Q Consensus 175 ~~~~g~~~d~~~~~~li~~~~k~g~-------~~~A~~vf~~m~--~-~~~~t~~~li~~~~~~g~~~~-----i~~~~~ 239 (523)
++. -..|...|+-.-..+.+.+. ++++.+.++... . .|...|+-+-..+.+.|+... +--+..
T Consensus 194 I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~ 271 (349)
T 3q7a_A 194 LRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTA 271 (349)
T ss_dssp HHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC
T ss_pred HHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 222 24467777777777777765 577777776654 2 466788876663332222100 000000
Q ss_pred c---CCchHHHHHHHHHHhcC-----CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 240 Y---GDGETALEFFSRMIQTD-----MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 240 ~---g~~~~A~~lf~~M~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
. -...+..++..++...+ -.++.+.+.-+.+.|...|+.++|.++++.+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 272 SKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp --------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 0 00122333333333221 136778888899999999999999999999865
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.024 Score=45.30 Aligned_cols=60 Identities=8% Similarity=-0.105 Sum_probs=46.7
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc----hhHHHHHHHHHHhcCChHHHHHH
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD----LLVNNSLMDFYAKCRYLKVAHCK 206 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d----~~~~~~li~~~~k~g~~~~A~~v 206 (523)
.++..+-..|.+.|++++|...|++ .-. ..|+ ..++..+-..|.+.|+.++|...
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~-------------------~~~--~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~ 98 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRD-------------------LVS--RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQT 98 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH--HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH-------------------HHH--HCCCCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3677788889999999999999988 222 1222 55677788889999999999999
Q ss_pred HhcCC
Q 035847 207 FSKIK 211 (523)
Q Consensus 207 f~~m~ 211 (523)
|+...
T Consensus 99 ~~~~~ 103 (129)
T 2xev_A 99 LQQVA 103 (129)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.024 Score=45.35 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-h---hHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-L---LVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 135 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~---~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
.+-..+.+.|++++|...|++ +++. .|+ . ..+..+-..|.+.|++++|...|+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~------------------~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~ 65 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLS------------------FLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL 65 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH------------------HHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHH------------------HHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 455667778888888888887 1222 122 2 46667777888888888888888776
Q ss_pred CC--CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 211 KQ--KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 211 ~~--~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
.+ |+ ...+..+-. .|.+.|++++|...|++....
T Consensus 66 ~~~~p~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 66 VSRYPTHDKAAGGLLKLGL------------SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHCTTSTTHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCCcccHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHH
Confidence 42 33 344555656 777888888888888887764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0039 Score=48.61 Aligned_cols=96 Identities=14% Similarity=0.038 Sum_probs=65.7
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..+.+.|++++|++.|++..... +.+..++..+-..|.+.|++++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~ 56 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------------------------PQNPVGYSNKAMALIKLGEYTQ 56 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHhcCHHH
Confidence 34556666677777777777777777665532 4466788888899999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-------hhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-------LLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-------~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|...|++ ... +.|+ ...+..+-.++...|+.+.|...|+.++
T Consensus 57 A~~~~~~-------------------al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 57 AIQMCQQ-------------------GLR--YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHH-------------------HHT--SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHH-------------------HHH--hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 9999988 222 3343 4455556666666777776666665543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=96.19 E-value=0.074 Score=54.28 Aligned_cols=204 Identities=11% Similarity=0.040 Sum_probs=119.4
Q ss_pred HHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH----HhcCCCCCCcchHHHHHHHH
Q 035847 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----MFEKMPERNVFSWTSMMGMY 80 (523)
Q Consensus 5 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~f~~~~~~~~~~~~~li~~~ 80 (523)
++..+|++.... .+.+...|-..+..+.+.|+.+.|..+++..... . .+..+. .|.... ..+..+...+
T Consensus 197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~y~~~~e~~----~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLYYGLVMDEE----AVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHTTCT----HHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHHHHhhcchh----HHHHHHHHHH
Confidence 355677777664 2334556766777777889999999999999987 2 222222 111111 0122232222
Q ss_pred HhcC-------CchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhc-CCHHHHHHH
Q 035847 81 NVLG-------YYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC-GRMEMASGE 152 (523)
Q Consensus 81 ~~~g-------~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~ 152 (523)
.... .......++.. .+....+.++++.|+.+|+.. +.. ..+..+|-.....-.+. ++.+.|..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~-----y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRIN-----HLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp C----------CHHHHHHHHHH-----HHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHH-----HHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 1000 00000011111 333444567799999999988 321 12222333222222222 358888888
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCcc
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~ 232 (523)
|+. .++..+- +...+...++...+.|+.+.|+.+|+...+ ....|...+.
T Consensus 343 fe~------------------al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~--------- 392 (493)
T 2uy1_A 343 FSS------------------GLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIE--------- 392 (493)
T ss_dssp HHH------------------HHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHH---------
T ss_pred HHH------------------HHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHH---------
Confidence 887 2443222 234566788888999999999999999843 5667888877
Q ss_pred ccchhhccCCchHHHHHHHHHHh
Q 035847 233 EITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 233 ~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
--...|+.+.+..+++++.+
T Consensus 393 ---fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 393 ---YEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---HHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHCCCHHHHHHHHHHHHH
Confidence 55677888888888888764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0042 Score=49.47 Aligned_cols=83 Identities=11% Similarity=-0.044 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHHHHhc--CCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhH
Q 035847 109 KDHRVGKDVYDYMISIK--FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~ 186 (523)
|++++|...+...++.+ -+.+..++..+-..|.+.|++++|...|+++ ++. .+-+..+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------------l~~--~p~~~~~ 63 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG------------------VKQ--FPNHQAL 63 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHh--CCCchHH
Confidence 44555555555555432 1224567788888888999999999998881 222 1224667
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 187 NNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 187 ~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
+..+-.+|.+.|+.++|...|+...
T Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 64 RVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7888888889999999998887653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.046 Score=52.77 Aligned_cols=111 Identities=8% Similarity=-0.059 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHh------HHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHH
Q 035847 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI------ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWR 336 (523)
Q Consensus 263 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~------~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~ 336 (523)
..+..+-..+.+.|+++.|...+...++.. |+...+. ..+. .-....|+.+-.+|.+.|++ ++|..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~----~l~~~~~~nla~~~~~~g~~--~~A~~ 251 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMAL----AVKNPCHLNIAACLIKLKRY--DEAIG 251 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHH----HHHTHHHHHHHHHHHTTTCC--HHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHH----HHHHHHHHHHHHHHHHcCCH--HHHHH
Confidence 345566677888999999999998887642 2211100 0000 00013788899999999999 99999
Q ss_pred HHHHhHHhcCCcc-CHhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC
Q 035847 337 YFEMMKKEYNMEP-AMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA 384 (523)
Q Consensus 337 ~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 384 (523)
.|+...+. .| +...|..+-.+|...|++++|...+++. .+.|+..
T Consensus 252 ~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 252 HCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 99998865 45 5788999999999999999999999985 4555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.033 Score=56.27 Aligned_cols=128 Identities=10% Similarity=0.003 Sum_probs=93.3
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC-------------cchHHHHHHHHHhcCCchHHH
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN-------------VFSWTSMMGMYNVLGYYEEIV 90 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~ 90 (523)
.|..+-..+.+.|+++.|...+...++..-. .++ ..+|..+-.+|.+.|++++|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 337 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM------------EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 337 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc------------cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 5666667788899999999999998875320 010 467777777888888888888
Q ss_pred HHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhH
Q 035847 91 NLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170 (523)
Q Consensus 91 ~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~ 170 (523)
..|++..+.. +.+...|..+-.+|.+.|++++|...|++
T Consensus 338 ~~~~~al~~~--------------------------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~--------------- 376 (457)
T 1kt0_A 338 ECCDKALGLD--------------------------SANEKGLYRRGEAQLLMNEFESAKGDFEK--------------- 376 (457)
T ss_dssp HHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------
T ss_pred HHHHHHHhcC--------------------------CccHHHHHHHHHHHHHccCHHHHHHHHHH---------------
Confidence 8887766532 34677888889999999999999999998
Q ss_pred hhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHH-HHhcC
Q 035847 171 HPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHC-KFSKI 210 (523)
Q Consensus 171 ~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~-vf~~m 210 (523)
... +.| +..++..+-..+.+.|+.++|.+ ++..|
T Consensus 377 ----al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 377 ----VLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp ----HHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----HHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 334 45688888888888888887764 44544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.059 Score=54.42 Aligned_cols=118 Identities=8% Similarity=0.012 Sum_probs=95.1
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHH
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPN----------------TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~ 299 (523)
.|.+.|++++|+..|++..+. .|+ ...|..+-.++.+.|++++|...+...++..
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~------- 347 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD------- 347 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred HHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------
Confidence 888999999999999998873 233 4778888889999999999999999998742
Q ss_pred HhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHH-HHHhC
Q 035847 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLN-FMKKM 377 (523)
Q Consensus 300 ~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~-~~~~m 377 (523)
+.+...|..+-.+|...|+. ++|...|+...+ +.|+ ...+..+..++.+.|+.++|.+ ++.+|
T Consensus 348 ----------p~~~~a~~~~g~a~~~~g~~--~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 ----------SANEKGLYRRGEAQLLMNEF--ESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----------CccHHHHHHHHHHHHHccCH--HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567788899999999999 999999998875 4565 5778888888999999988775 45666
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.25 Score=47.19 Aligned_cols=189 Identities=9% Similarity=-0.040 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCC--chHHHHHHHHhhHccHHHHhhccCChHHHH
Q 035847 38 LELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY--YEEIVNLFYLLIDEGVYKACSELKDHRVGK 115 (523)
Q Consensus 38 ~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~gll~~~~~~~~~~~a~ 115 (523)
++.+..+++.+.... ..+..+|+----.+.+.|. +++++.+++.+.+..
T Consensus 90 l~~EL~~~~~~L~~~--------------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--------------- 140 (331)
T 3dss_A 90 VKAELGFLESCLRVN--------------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------------- 140 (331)
T ss_dssp HHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---------------
Confidence 455556666665543 3466777766555556563 677777777776654
Q ss_pred HHHHHHHHhcCCCCceeHhHHHHHHHhcCC-HHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHH
Q 035847 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGR-MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194 (523)
Q Consensus 116 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~ 194 (523)
+.|..+|+---..+.+.|. +++++..+++ +-. --..|...|+-.-..+
T Consensus 141 -----------prNy~AW~~R~~vl~~l~~~~~eel~~~~~-------------------~I~-~~p~N~SAW~~R~~ll 189 (331)
T 3dss_A 141 -----------ERNFHCWDYRRFVAAQAAVAPAEELAFTDS-------------------LIT-RNFSNYSSWHYRSCLL 189 (331)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH-------------------HHH-HCSCCHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHH-------------------HHH-HCCCCHHHHHHHHHHH
Confidence 5566777777666777777 5777777777 222 1234555666555555
Q ss_pred Hhc--------------CChHHHHHHHhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 195 AKC--------------RYLKVAHCKFSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 195 ~k~--------------g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
.+. +.++++.+.++... .| |..+|+-+-..+.+.-....+ .-.+.+.++++++.++++.+.
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~-~~~~~~~l~~el~~~~elle~- 267 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL-SVEKSTVLQSELESCKELQEL- 267 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC-CHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc-chHHHHHHHHHHHHHHHHHhh-
Confidence 444 34667777776653 34 667787544311111000000 001124578999999999874
Q ss_pred CCCCHHHHHH-----HHHHhhccCChhHHHHHHHHHHH
Q 035847 258 MQPNTISLSG-----VLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 258 ~~p~~~t~~~-----ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.||. .|+. ++.+....+..++....++.+++
T Consensus 268 -~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 268 -EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp -CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred -Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4654 3332 22233345666677777777775
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=1 Score=43.03 Aligned_cols=136 Identities=10% Similarity=0.017 Sum_probs=89.7
Q ss_pred CCchhHHHHHHHHHHhcC--ChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCC-chHHHHHHHHHH
Q 035847 181 ESDLLVNNSLMDFYAKCR--YLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGD-GETALEFFSRMI 254 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g--~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~-~~~A~~lf~~M~ 254 (523)
+-+..+|+.--..+.+.| +++++..+++.+.+ +|-.+|+---- ...+.|. ++++++.+..+.
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~------------vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF------------VAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHH------------HHHHhCcCHHHHHHHHHHHH
Confidence 346678877777777777 48899999998864 56677877655 5556677 589999999999
Q ss_pred hcCCCCCHHHHHHHHHHhhcc--------------CChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHH
Q 035847 255 QTDMQPNTISLSGVLAACAQV--------------KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320 (523)
Q Consensus 255 ~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li 320 (523)
+..+ -|...|+-.-..+.+. +.++++.+.+...+... +-|...|+-+-
T Consensus 173 ~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-----------------P~d~SaW~Y~r 234 (331)
T 3dss_A 173 TRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-----------------PNDQSAWFYHR 234 (331)
T ss_dssp HHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-----------------TTCHHHHHHHH
T ss_pred HHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-----------------CCCHHHHHHHH
Confidence 8653 3666666554444443 33566666666665532 22445565443
Q ss_pred HHHHhc-----------CCCchHHHHHHHHHhHHhcCCccCH
Q 035847 321 DMYGRC-----------GAIQKNEGWRYFEMMKKEYNMEPAM 351 (523)
Q Consensus 321 ~~~~~~-----------g~~~~~~a~~~~~~m~~~~g~~p~~ 351 (523)
..+.+. +.+ +++++.++++.+. .||.
T Consensus 235 ~ll~~~~~~~~~~~~~~~~l--~~el~~~~elle~---~pd~ 271 (331)
T 3dss_A 235 WLLGAGSGRCELSVEKSTVL--QSELESCKELQEL---EPEN 271 (331)
T ss_dssp HHHHSSSCGGGCCHHHHHHH--HHHHHHHHHHHHH---CTTC
T ss_pred HHHHhccCccccchHHHHHH--HHHHHHHHHHHhh---Cccc
Confidence 333333 345 8899999999865 6774
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.043 Score=52.98 Aligned_cols=137 Identities=15% Similarity=0.084 Sum_probs=64.4
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCC-------CCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPE-------RNVFSWTSMMGMYNVLGYYEEIVNLFYLL 96 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m 96 (523)
.+..+-..+.+.|+++.|...+...+...- +... +..... -....|+.+-..|.+.|++++|+..|++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~~--~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDFM--FQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHHH--HTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cchh--hhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666778889999999999998876531 1000 000000 00014555555555555555555555544
Q ss_pred hHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhh
Q 035847 97 IDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176 (523)
Q Consensus 97 ~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~ 176 (523)
.+ .. +.+...|..+-.+|...|++++|...|++ ..
T Consensus 257 l~-------------------------~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~-------------------al 291 (338)
T 2if4_A 257 LT-------------------------EE-EKNPKALFRRGKAKAELGQMDSARDDFRK-------------------AQ 291 (338)
T ss_dssp HH-------------------------HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH-------------------TT
T ss_pred HH-------------------------hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HH
Confidence 43 31 34667888899999999999999999998 22
Q ss_pred cCCCCC-chhHHHHHHHHH-HhcCChHHHHHHHhcCC
Q 035847 177 KDDLES-DLLVNNSLMDFY-AKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 177 ~~g~~~-d~~~~~~li~~~-~k~g~~~~A~~vf~~m~ 211 (523)
. +.| +..++..|.... ...+..+.+..+|..|.
T Consensus 292 ~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 292 K--YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp C------------------------------------
T ss_pred H--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 233 233444444442 23455667777777664
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.037 Score=46.62 Aligned_cols=107 Identities=8% Similarity=0.013 Sum_probs=72.3
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCC---------CCCchhHHHHHHHHHHhcCChHH
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD---------LESDLLVNNSLMDFYAKCRYLKV 202 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~~d~~~~~~li~~~~k~g~~~~ 202 (523)
.+...-..+.+.|++++|...|.++ ..+......... -..+..+|..+-.+|.+.|++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~a-----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~ 81 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDA-----------LTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHE 81 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4556677888999999999999982 111111100000 01134577788888888899888
Q ss_pred HHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHH
Q 035847 203 AHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263 (523)
Q Consensus 203 A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 263 (523)
|...++...+ | +...|..+-. +|...|++++|+..|+..... .|+..
T Consensus 82 A~~~~~~al~~~p~~~~a~~~~g~------------~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 82 AEETSSEVLKREETNEKALFRRAK------------ARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHH------------HHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 8888876542 3 4567777777 788888888898888887764 45543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.065 Score=52.43 Aligned_cols=113 Identities=9% Similarity=0.046 Sum_probs=84.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhH----------------cc---------HHHHhhccCChHHHHHHHHHHHHhc
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLID----------------EG---------VYKACSELKDHRVGKDVYDYMISIK 125 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~----------------~g---------ll~~~~~~~~~~~a~~~~~~m~~~g 125 (523)
..|..+-..+.+.|++++|++.|++..+ .. +-.++.+.|++++|.+.++..++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3477778888999999999999988775 22 5556677889999999999888753
Q ss_pred CCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHH
Q 035847 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAH 204 (523)
Q Consensus 126 ~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~ 204 (523)
+.+...|..+-.+|.+.|++++|...|++ ... +.| +..++..+-..+.+.++.+++.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~-------------------Al~--l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKK-------------------AQE--IAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH--HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHH-------------------HHH--hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23566778888889999999999999888 222 123 4566777777777777776665
Q ss_pred H
Q 035847 205 C 205 (523)
Q Consensus 205 ~ 205 (523)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.044 Score=46.12 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=73.7
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
+..|...-..+.+.|++++|+..|.+.... +.......+..... ...+ -+.+..+|..+-.+|.+.|++++|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~--~~~~~~~~~~~~~~--~~~~----~~~~~~~~~nla~~~~~~~~~~~A 82 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR--LDTLILREKPGEPE--WVEL----DRKNIPLYANMSQCYLNIGDLHEA 82 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHHHTSCTTSHH--HHHH----HHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhcccCCCCHHH--HHHH----HHHHHHHHHHHHHHHHhcCcHHHH
Confidence 345666677788888888888888775541 11111100000000 0000 012345788888899999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
...++++ ++. -+.+...|..+-.+|...|++++|...|+...
T Consensus 83 ~~~~~~a------------------l~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 83 EETSSEV------------------LKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHH------------------HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH------------------Hhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 9999881 222 13357788888999999999999999998754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.048 Score=40.27 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=47.6
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..+.+.|++++|+..|++..... +.+..++..+-..|.+.|++++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~ 61 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------PNNAEAWYNLGNAYYKQGDYDE 61 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHHhhHHH
Confidence 34567777777888888888888887765532 3356678888899999999999
Q ss_pred HHHHhhh
Q 035847 149 ASGEFEE 155 (523)
Q Consensus 149 A~~~f~~ 155 (523)
|...|++
T Consensus 62 A~~~~~~ 68 (91)
T 1na3_A 62 AIEYYQK 68 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.17 Score=39.50 Aligned_cols=80 Identities=6% Similarity=0.001 Sum_probs=64.6
Q ss_pred hHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhc
Q 035847 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~ 83 (523)
++|+..|++..+.. +.+...+..+-..+...|+++.|...+....+.. ..+...|..+-..|.+.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------------PTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------------CCcHHHHHHHHHHHHHc
Confidence 46788888877643 2356678888888889999999999999998764 23567889999999999
Q ss_pred CCchHHHHHHHHhhH
Q 035847 84 GYYEEIVNLFYLLID 98 (523)
Q Consensus 84 g~~~~A~~l~~~m~~ 98 (523)
|++++|+..|++...
T Consensus 67 g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 67 GDRAGARQAWESGLA 81 (115)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.11 Score=50.73 Aligned_cols=115 Identities=8% Similarity=0.066 Sum_probs=82.7
Q ss_pred hhhccCCchHHHHHHHHHHhc--------------CCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHH
Q 035847 236 GFTQYGDGETALEFFSRMIQT--------------DMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~--------------g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~ 300 (523)
.+.+.|++++|++.|++..+. ...| +..+|..+-.++.+.|++++|.+.++..++.. |
T Consensus 232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p----- 304 (370)
T 1ihg_A 232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--P----- 304 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--T-----
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--c-----
Confidence 788999999999999988751 0223 34567777777888888888888888877632 1
Q ss_pred hHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHH
Q 035847 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLN 372 (523)
Q Consensus 301 ~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~ 372 (523)
.+...|..+-.+|...|+. ++|...|++..+. .|+ ...+..+-.++.+.++.+++.+
T Consensus 305 ----------~~~~a~~~lg~~~~~~g~~--~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 ----------SNTKALYRRAQGWQGLKEY--DQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------hhHHHHHHHHHHHHHccCH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455677778888888888 8888888887754 453 5566666667777777766654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.024 Score=43.84 Aligned_cols=95 Identities=2% Similarity=-0.085 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHH
Q 035847 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340 (523)
Q Consensus 261 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~ 340 (523)
+...+..+-..+...|++++|.+.+...++.. +.+...|..+-.+|...|+. ++|...|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~ 63 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-----------------PQNPVGYSNKAMALIKLGEY--TQAIQMCQQ 63 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHhcCH--HHHHHHHHH
Confidence 44566667777888888888888888887642 12456777888888888988 889988888
Q ss_pred hHHhcCCccC-------HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 341 MKKEYNMEPA-------MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 341 m~~~~g~~p~-------~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
..+ +.|+ ...+..+-.++...|+.++|.+.++++
T Consensus 64 al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 64 GLR---YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHT---SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHH---hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 764 3565 344445555555555555555444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.31 Score=39.84 Aligned_cols=110 Identities=8% Similarity=-0.015 Sum_probs=84.5
Q ss_pred hccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHH
Q 035847 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWN 317 (523)
Q Consensus 238 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n 317 (523)
.-.+++++|++.|++..+.| .|+.. |-..|...+.++.|.+.+....+.| +...++
T Consensus 6 g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g-------------------~~~a~~ 61 (138)
T 1klx_A 6 TVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN-------------------SGNGCR 61 (138)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT-------------------CHHHHH
T ss_pred CCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC-------------------CHHHHH
Confidence 34457899999999999888 44444 5556777788899999999998876 445566
Q ss_pred HHHHHHHh----cCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh----hCCHHHHHHHHHhC
Q 035847 318 SLIDMYGR----CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR----AGQFDDTLNFMKKM 377 (523)
Q Consensus 318 ~li~~~~~----~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~~~~~m 377 (523)
.|-..|.. .++. ++|..+|+...+. | +...+..|-..|.. .++.++|.+++++-
T Consensus 62 ~Lg~~y~~G~g~~~d~--~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 62 FLGDFYENGKYVKKDL--RKAAQYYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHHHCSSSCCCH--HHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCccH--HHHHHHHHHHHcC-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 66666766 6778 9999999998875 5 46667777777777 78999999988773
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.22 Score=49.64 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHh----cC-CccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKE----YN-MEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~----~g-~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+++.|...|...|++ ++|..++++...- +| -.|+ ..+|+.|-..|...|++++|..++++.
T Consensus 331 ~~~~L~~~y~~~g~~--~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 331 VLDCAMDACINLGLL--EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccH--HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344444444444444 4444444433321 12 3344 477888889999999999999888774
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.16 Score=39.62 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHH
Q 035847 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323 (523)
Q Consensus 244 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~ 323 (523)
++|++.|++..+.. +-+...+..+-..+...|++++|...++..++.. +.+...|..+-..|
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~ 63 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-----------------PTYSVAWKWLGKTL 63 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----------------CCcHHHHHHHHHHH
Confidence 35677777776642 2245667777777888888888888888877642 12345677778888
Q ss_pred HhcCCCchHHHHHHHHHhHHh
Q 035847 324 GRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 324 ~~~g~~~~~~a~~~~~~m~~~ 344 (523)
...|+. ++|...|+...+.
T Consensus 64 ~~~g~~--~~A~~~~~~al~~ 82 (115)
T 2kat_A 64 QGQGDR--AGARQAWESGLAA 82 (115)
T ss_dssp HHHTCH--HHHHHHHHHHHHH
T ss_pred HHcCCH--HHHHHHHHHHHHh
Confidence 888888 8888888877654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.18 Score=42.42 Aligned_cols=104 Identities=8% Similarity=-0.023 Sum_probs=71.3
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHhcCC-chHHHHhHHHhhhCC-CCCcchHHHHHHHHHhcCCCchHHHHHHHHHh
Q 035847 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ-LSTGVGIALISIQGL-GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341 (523)
Q Consensus 264 t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m 341 (523)
.+...-..+.+.|++++|...++..++..-. |+. +.... ..+...|+.+-.++.+.|++ ++|+..++..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~-------~a~~~~~~~a~a~~n~g~al~~Lgr~--~eAl~~~~kA 83 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE-------EAFDHAGFDAFCHAGLAEALAGLRSF--DEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT-------SCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch-------hhhhhccchHHHHHHHHHHHHHCCCH--HHHHHHHHHH
Confidence 3444555667788899999888888774321 100 00000 00223899999999999999 9999999887
Q ss_pred HHh----cCCccC-HhHH----HHHHHHHHhhCCHHHHHHHHHh
Q 035847 342 KKE----YNMEPA-MEQY----CCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 342 ~~~----~g~~p~-~~ty----~~li~~~~~~g~~~~A~~~~~~ 376 (523)
.+. -.+.|+ ...| ...-.++...|++++|+..+++
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 742 112776 4567 7788888899999999888776
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.033 Score=46.94 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=68.3
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC-CchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE-SDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~d~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
.+...-..+.+.|++++|...|+++.--.+...+ +. ..... .+...|+.+-.++.+.|++++|...++..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~-~~--------a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP-EE--------AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT-TS--------CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcc-hh--------hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455667788899999999999982100000000 00 00000 12348999999999999999998888765
Q ss_pred C---------CCC-hhhH----HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 211 K---------QKH-LVSW----NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 211 ~---------~~~-~~t~----~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
. .|| ...| ...-. ++...|++++|+..|++..+
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~------------aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRAL------------ALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHH------------HHHHCCCHHHHHHHHHHHHh
Confidence 3 343 2355 55555 88899999999999998765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.037 Score=55.33 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC----------CCCh-hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIK----------QKHL-VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~----------~~~~-~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
..+++.|...|...|++++|..++++.. .|++ .++|.|-. .|...|++++|+.+|++
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~------------~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR------------LYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH------------HHHhccCHHHHHHHHHH
Confidence 5689999999999999999999998764 2444 47888988 99999999999999988
Q ss_pred HHh
Q 035847 253 MIQ 255 (523)
Q Consensus 253 M~~ 255 (523)
..+
T Consensus 408 Al~ 410 (433)
T 3qww_A 408 AIA 410 (433)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.083 Score=40.38 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=51.9
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..|.+.|++++|+..|++..+.. +.+..+|..+-..|.+.|++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~a~~~lg~~~~~~g~~~~ 59 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--------------------------PDYVGTYYHLGKLYERLDRTDD 59 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCTHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHcCCHHH
Confidence 56778888888999999999999998877643 3457788999999999999999
Q ss_pred HHHHhhh
Q 035847 149 ASGEFEE 155 (523)
Q Consensus 149 A~~~f~~ 155 (523)
|...|++
T Consensus 60 A~~~~~~ 66 (100)
T 3ma5_A 60 AIDTYAQ 66 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999998
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.45 Score=51.37 Aligned_cols=142 Identities=12% Similarity=0.036 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHH
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ 267 (523)
..++..+-+.|..+.|.++.+. + ..- .. ...+.|++++|+++.+.+ .+...|..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---~-~~~----f~------------~~l~~~~~~~A~~~~~~~------~~~~~W~~ 686 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---Q-DQK----FE------------LALKVGQLTLARDLLTDE------SAEMKWRA 686 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---H-HHH----HH------------HHHHHTCHHHHHHHHTTC------CCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC---c-chh----ee------------hhhhcCCHHHHHHHHHhh------CcHhHHHH
Confidence 6777788888888888876642 1 111 12 334578888888876543 46678888
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCC
Q 035847 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347 (523)
Q Consensus 268 ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~ 347 (523)
+-..|.+.++++.|++.|..+.. |..+...|...|+. +...++-+..... |
T Consensus 687 la~~al~~~~~~~A~~~y~~~~d-------------------------~~~l~~l~~~~~~~--~~~~~~~~~a~~~-~- 737 (814)
T 3mkq_A 687 LGDASLQRFNFKLAIEAFTNAHD-------------------------LESLFLLHSSFNNK--EGLVTLAKDAETT-G- 737 (814)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTC-------------------------HHHHHHHHHHTTCH--HHHHHHHHHHHHT-T-
T ss_pred HHHHHHHcCCHHHHHHHHHHccC-------------------------hhhhHHHHHHcCCH--HHHHHHHHHHHHc-C-
Confidence 88888888888888888877643 44555566666665 5444444333332 3
Q ss_pred ccCHhHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Q 035847 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARH 398 (523)
Q Consensus 348 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~~~~~~~~~ 398 (523)
-++.-..+|.+.|++++|.+++.++ +..+.|...++.
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~~---------~~~~~A~~lA~~ 774 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIKS---------QRFSEAAFLGST 774 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHHT---------TCHHHHHHHHHH
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHHc---------CChHHHHHHHHH
Confidence 2344455677788888888888887 456666555543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.92 Score=36.62 Aligned_cols=74 Identities=8% Similarity=0.011 Sum_probs=57.8
Q ss_pred HHHhhhhcCCccc-----cchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCc
Q 035847 221 MLAGYALGGFREE-----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295 (523)
Q Consensus 221 li~~~~~~g~~~~-----i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~ 295 (523)
++.+|++.+...+ +......|+-++-.+++.++.. +.+|++.....+-.||.+.|+..++.+++.+.-+.|++-
T Consensus 80 Vi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 80 VVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 4444444444444 4478889999999999999644 467888889999999999999999999999999998753
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.35 Score=36.75 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=66.0
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...+..+-.++...|+++.|...++..++... .+...|..+-..|.+.|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-- 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP--------------DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE-- 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 455677788888899999999999999998752 3577899999999999999999999988554
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhc
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIK 125 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g 125 (523)
..-..++...+.++-..+.+.+
T Consensus 70 ---l~~~~~~~~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 70 ---VAREEGTQKDLSELQDAKLKAE 91 (100)
T ss_dssp ---HHHHHSCHHHHHHHHHHHHHHH
T ss_pred ---hhhcCCchhHHHHHHHHHHHcc
Confidence 2344556665655555555444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.17 Score=50.50 Aligned_cols=91 Identities=10% Similarity=-0.031 Sum_probs=69.3
Q ss_pred ccCChHHHHHHHHHHHHhc---CCCC----ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCC
Q 035847 107 ELKDHRVGKDVYDYMISIK---FEGN----ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179 (523)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g 179 (523)
..|++++|..++++.++.. +.|+ ..+++.|...|...|++++|..++++ +.++.....-.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~-----------aL~i~~~~lG~-- 376 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK-----------IIKPYSKHYPV-- 376 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHHSCS--
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHHcCC--
Confidence 4678899999999887642 3343 45799999999999999999999998 23333332211
Q ss_pred CCCc-hhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 180 LESD-LLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 180 ~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
-.|+ ..+++.|-..|...|++++|..++++.
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 2444 558999999999999999999998863
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=94.10 E-value=3.6 Score=38.98 Aligned_cols=135 Identities=11% Similarity=0.012 Sum_probs=85.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHH----HHHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGK----DVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~----~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
..|.++..-|.+.+++++|++++.. -...+.+.|....|- -+.+...+.++++|.....-|+..+.....-
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~ 110 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPG 110 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Confidence 4577888999999999999998754 222333445555544 4456667788889988888888877776543
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcC-CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHH
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD-DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~ 223 (523)
+-.+.-|-. ....+-.+.. ...-|......+-..|.+.+++.+|+.-|-.-.++....+..|+.
T Consensus 111 ~p~r~~fi~-------------~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 111 EPVRKRFVK-------------EMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEY 175 (336)
T ss_dssp CHHHHHHHH-------------HHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred CcHHHHHHH-------------HHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHH
Confidence 322222221 0111112220 133466777888899999999999999985322233356666655
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.80 E-value=1.5 Score=47.30 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=67.9
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~ 213 (523)
..++..+.+.|..+.|+++.++ ... -......+|+++.|.++.+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------------------~~~------------~f~~~l~~~~~~~A~~~~~~~~-- 679 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------------------QDQ------------KFELALKVGQLTLARDLLTDES-- 679 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------------------HHH------------HHHHHHHHTCHHHHHHHHTTCC--
T ss_pred HHHHHHHHhCCChHHheecCCC-------------------cch------------heehhhhcCCHHHHHHHHHhhC--
Confidence 6777888888888888877654 111 1244567899999998887764
Q ss_pred ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~ 289 (523)
+...|..+-. .+.+.|+++.|.+.|..+.. |..+...+...++.+...++-+...
T Consensus 680 ~~~~W~~la~------------~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 680 AEMKWRALGD------------ASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp CHHHHHHHHH------------HHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHhHHHHHHH------------HHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 4568888888 88888888888888887743 2233333444555555554443333
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.23 Score=49.51 Aligned_cols=97 Identities=10% Similarity=-0.115 Sum_probs=72.8
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhc---CCCC----ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhh
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIK---FEGN----ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~ 173 (523)
.+..+.+.|++++|..++++.++.- +.|+ ..+++.|...|...|++++|..++++ +..+...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~-----------~L~i~~~ 361 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR-----------TMEPYRI 361 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-----------HHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH-----------HHHhHHH
Confidence 4555667889999999999888542 3333 45789999999999999999999998 2333332
Q ss_pred hhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 174 HLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 174 ~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
..- ...|+ ..+++.|-..|...|++++|..++++.
T Consensus 362 ~lg--~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 362 FFP--GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HSC--SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 221 23444 558899999999999999999988763
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=93.66 E-value=0.3 Score=35.66 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=52.5
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE 99 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 99 (523)
...+..+-..+...|+++.|...+....+.. ..+..+|..+-..|.+.|++++|+..|++....
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3466677777888999999999999988764 235678888999999999999999999887653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=93.60 E-value=1.4 Score=35.73 Aligned_cols=104 Identities=8% Similarity=-0.135 Sum_probs=61.0
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|+..|++-.+.|. |+ .. |-..+...+..+.|...+....+.| +..++..|=..|.+
T Consensus 11 ~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g----------------~~~a~~~Lg~~y~~ 69 (138)
T 1klx_A 11 LKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN----------------SGNGCRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC----------------CHHHHHHHHHHHHc
Confidence 3567777776666652 22 22 4444445556666666666666654 34555555555555
Q ss_pred ----cCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHh----cCCHHHHHHHhh
Q 035847 83 ----LGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK----CGRMEMASGEFE 154 (523)
Q Consensus 83 ----~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f~ 154 (523)
.+++++|++.|++-.+.| +...+..|-.+|.. .++.++|...|+
T Consensus 70 G~g~~~d~~~A~~~~~~Aa~~g----------------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 121 (138)
T 1klx_A 70 GKYVKKDLRKAAQYYSKACGLN----------------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121 (138)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHcCC----------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 556666666665554433 34455556666666 677777777777
Q ss_pred h
Q 035847 155 E 155 (523)
Q Consensus 155 ~ 155 (523)
+
T Consensus 122 ~ 122 (138)
T 1klx_A 122 K 122 (138)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=1.8 Score=44.81 Aligned_cols=167 Identities=10% Similarity=0.013 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHhcCCC-CceeHhHHHHHHHhcCC----------HHHHHHHhhhccccccCchhhHhhHhhhhhhcCC
Q 035847 111 HRVGKDVYDYMISIKFEG-NACVKRPVLDMFIKCGR----------MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~----------~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g 179 (523)
-++|.+.++.++.. .| +..+|+.-=..+.+.|+ +++++..+++ +++.
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~------------------~l~~-- 102 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLES------------------CLRV-- 102 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH------------------HHHH--
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHH------------------HHHh--
Confidence 34556666666654 34 34566655555555555 7788888877 2332
Q ss_pred CCCchhHHHHHHHHHHhcC--ChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccC-CchHHHHHHHHH
Q 035847 180 LESDLLVNNSLMDFYAKCR--YLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYG-DGETALEFFSRM 253 (523)
Q Consensus 180 ~~~d~~~~~~li~~~~k~g--~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g-~~~~A~~lf~~M 253 (523)
-.-+..+|+.--..+.+.| +++++...++.+.+ +|-..|+---- .+.+.| .++++++.++++
T Consensus 103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~------------~l~~l~~~~~~el~~~~~~ 170 (567)
T 1dce_A 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF------------VAAQAAVAPAEELAFTDSL 170 (567)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTCCCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHH------------HHHHcCCChHHHHHHHHHH
Confidence 2345667887777788888 67999999998864 57778887666 555677 789999999999
Q ss_pred HhcCCCCCHHHHHHHHHHhhcc--------------CChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHH
Q 035847 254 IQTDMQPNTISLSGVLAACAQV--------------KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319 (523)
Q Consensus 254 ~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~l 319 (523)
.+.... |...|+-.-..+.+. +.++++.+.+...++.. +-|...|+-+
T Consensus 171 I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-----------------P~~~saW~y~ 232 (567)
T 1dce_A 171 ITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-----------------PNDQSAWFYH 232 (567)
T ss_dssp TTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-----------------SSCSHHHHHH
T ss_pred HHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-----------------CCCccHHHHH
Confidence 875432 666777655555442 34566777666666532 2366778877
Q ss_pred HHHHHhcCCC
Q 035847 320 IDMYGRCGAI 329 (523)
Q Consensus 320 i~~~~~~g~~ 329 (523)
-..+.+.++.
T Consensus 233 ~~ll~~~~~~ 242 (567)
T 1dce_A 233 RWLLGRAEPH 242 (567)
T ss_dssp HHHHSCCCCC
T ss_pred HHHHhcCCCc
Confidence 7777777664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=91.90 E-value=4.8 Score=41.51 Aligned_cols=178 Identities=7% Similarity=-0.079 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCC----------chHHHHHHHHhhHccHHHHhhc
Q 035847 38 LELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY----------YEEIVNLFYLLIDEGVYKACSE 107 (523)
Q Consensus 38 ~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~gll~~~~~ 107 (523)
-++|...++.++.... .+..+|+.-=..+.+.|+ ++++++.++.+.+..
T Consensus 45 ~eeal~~~~~~l~~nP--------------~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~------- 103 (567)
T 1dce_A 45 DESVLELTSQILGANP--------------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN------- 103 (567)
T ss_dssp SHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHCc--------------hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-------
Confidence 4566777777776542 355667654444444444 566666666655432
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC--CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG--RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~ 185 (523)
+-+..+|+.--..+.+.| ++++++..+++ +-. --..|-.
T Consensus 104 -------------------pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k-------------------~l~-~d~~N~~ 144 (567)
T 1dce_A 104 -------------------PKSYGTWHHRCWLLSRLPEPNWARELELCAR-------------------FLE-ADERNFH 144 (567)
T ss_dssp -------------------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHH-------------------HHH-HCTTCHH
T ss_pred -------------------CCCHHHHHHHHHHHHHcccccHHHHHHHHHH-------------------HHh-hcccccc
Confidence 456678888777888888 67999999988 322 1234677
Q ss_pred HHHHHHHHHHhcC-ChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCcccc--chhhccCCchHHHHHHHHHHhcCCC
Q 035847 186 VNNSLMDFYAKCR-YLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEI--TGFTQYGDGETALEFFSRMIQTDMQ 259 (523)
Q Consensus 186 ~~~~li~~~~k~g-~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i--~~~~~~g~~~~A~~lf~~M~~~g~~ 259 (523)
.|+---..+.+.| ..+++.+.++.+.+ .|..+|+-.-..+.+.+...+- .+-...+.+++|++.+++.... .
T Consensus 145 aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~ 222 (567)
T 1dce_A 145 CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--D 222 (567)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--C
Confidence 7887777778888 88999999998876 3556788776633321110000 0001125578999999888764 3
Q ss_pred C-CHHHHHHHHHHhhccCC
Q 035847 260 P-NTISLSGVLAACAQVKG 277 (523)
Q Consensus 260 p-~~~t~~~ll~a~~~~g~ 277 (523)
| |...|.-.-..+.+.+.
T Consensus 223 P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 223 PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCSHHHHHHHHHHSCCCC
T ss_pred CCCccHHHHHHHHHhcCCC
Confidence 4 56677766666666655
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.69 E-value=5.7 Score=37.30 Aligned_cols=134 Identities=10% Similarity=0.084 Sum_probs=85.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHH----HHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKD----VYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
..|.++..-|.+.+++++|++++.. -...+.+.|+...|-+ +.+...+.+.++|.....-|+..+.....-
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~ 108 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPS 108 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCC
Confidence 5688899999999999999999755 2223344566655554 456666678888888888888777664322
Q ss_pred HHH-HHHhhhccccccCchhhHhhHhhhhhhcCC-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHH
Q 035847 147 EMA-SGEFEEKDFSNLSLLKHGKEIHPHHLKKDD-LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223 (523)
Q Consensus 147 ~~A-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~ 223 (523)
+.. .++.++ ...+-.+..+ ..-|......+-..|.+.|++.+|+.-|-.-...|...+..++.
T Consensus 109 ~~~r~~fi~~--------------ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 109 EPNLKDVITG--------------MNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLW 173 (312)
T ss_dssp CTTHHHHHHH--------------HHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CchHHHHHHH--------------HHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHH
Confidence 211 112222 1111111211 22367788889999999999999999886332224555665555
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=90.46 E-value=2.7 Score=40.54 Aligned_cols=72 Identities=6% Similarity=-0.057 Sum_probs=56.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~ 258 (523)
..+..+|.++-..+...|++++|...+++.. .|+...|..+-. .+.-.|++++|.+.|++....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~------------~~~~~G~~~eA~e~~~~AlrL-- 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGK------------VYEMKGMNREAADAYLTAFNL-- 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHH--
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHhc--
Confidence 5577788888777777899999999999875 477666655555 777899999999999988774
Q ss_pred CCCHHHHH
Q 035847 259 QPNTISLS 266 (523)
Q Consensus 259 ~p~~~t~~ 266 (523)
.|...||.
T Consensus 340 ~P~~~t~~ 347 (372)
T 3ly7_A 340 RPGANTLY 347 (372)
T ss_dssp SCSHHHHH
T ss_pred CCCcChHH
Confidence 57777765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=90.20 E-value=0.17 Score=38.08 Aligned_cols=82 Identities=16% Similarity=0.119 Sum_probs=56.3
Q ss_pred HHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-Hh-HHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-CC--CCHHHH
Q 035847 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-ME-QYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA-EP--CNPDIA 392 (523)
Q Consensus 319 li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~-ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~--~~~~~~ 392 (523)
....+...|+. ++|...|+...+. .|+ .. .|..+-.+|.+.|++++|.+.+++. ...|+.. .+ +.+..+
T Consensus 6 ~a~~~~~~~~~--~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a 80 (99)
T 2kc7_A 6 TIKELINQGDI--ENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDI 80 (99)
T ss_dssp HHHHHHHHTCH--HHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHcCCH--HHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34567788999 9999999998875 454 46 7888889999999999999998874 3445444 11 333444
Q ss_pred HHHHHHHHhhCCC
Q 035847 393 EHAARHLFELEPL 405 (523)
Q Consensus 393 ~~~~~~l~~~~~~ 405 (523)
....+++....|.
T Consensus 81 ~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 81 LNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHCCTTHHHHC
T ss_pred HHHHHHHhccCcc
Confidence 4444444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.06 E-value=0.7 Score=38.72 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=61.0
Q ss_pred CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHH
Q 035847 35 LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG 114 (523)
Q Consensus 35 ~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a 114 (523)
.+.+++|.+.++..++.. ..+...|+.+=.++.+.++++.+.+... .+++|
T Consensus 15 ~~~feeA~~~~~~Ai~l~--------------P~~aea~~n~G~~l~~l~~~~~g~~al~---------------~~~eA 65 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--------------PLDADNLTRWGGVLLELSQFHSISDAKQ---------------MIQEA 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHHHHSCHHHHHH---------------HHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHhcccchhhhhHh---------------HHHHH
Confidence 345777888888777764 3477888888888888777653333221 13445
Q ss_pred HHHHHHHHHhcCCC-CceeHhHHHHHHHhcC-----------CHHHHHHHhhh
Q 035847 115 KDVYDYMISIKFEG-NACVKRPVLDMFIKCG-----------RMEMASGEFEE 155 (523)
Q Consensus 115 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g-----------~~~~A~~~f~~ 155 (523)
...|++.++. .| +..+|..+-.+|...| ++++|...|++
T Consensus 66 i~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~k 116 (158)
T 1zu2_A 66 ITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQ 116 (158)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHH
Confidence 5555555554 45 5668888999998774 78889888888
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.00 E-value=2.2 Score=36.36 Aligned_cols=103 Identities=12% Similarity=0.122 Sum_probs=73.4
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
-..+.|+++.|.++-+++ -+...|..|-+.+...|+++.|++.|.....
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------------------- 62 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS------------------------- 62 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------------------
Confidence 345689999999998876 3688999999999999999999999877643
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
|..+.--|.-.|+. +.-.++ .++....| -++.-...+.-.|+++++.+++.+.+
T Consensus 63 ~~~L~~Ly~~tg~~--e~L~kl-a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 63 FDKLSFLYLVTGDV--NKLSKM-QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHHTCH--HHHHHH-HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCH--HHHHHH-HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 45566666677775 433333 22222212 34555556667889999999888874
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=89.84 E-value=0.67 Score=34.60 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=30.8
Q ss_pred cCChHHHHHHHHHHHHhcCCCCce-eHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNAC-VKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
.|+++.|.+.++..++.. +.+.. .+..+-..|.+.|++++|...|++
T Consensus 13 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444332 33456 777888888889999999999888
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.42 E-value=11 Score=32.04 Aligned_cols=132 Identities=10% Similarity=0.077 Sum_probs=92.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 035847 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270 (523)
Q Consensus 191 i~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 270 (523)
.+....+|+++.|.++.+.+ .+...|..|-. ...+.|+++-|.+.|..... |..+.-
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~------------~AL~~gn~~lAe~cy~~~~D---------~~~L~~ 68 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQ------------EALAQGNASLAEMIYQTQHS---------FDKLSF 68 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHH------------HHHHTTCHHHHHHHHHHTTC---------HHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHH------------HHHHcCChHHHHHHHHHhCC---------HHHHHH
Confidence 34556799999999998876 46778999999 88899999999999988753 233333
Q ss_pred HhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC
Q 035847 271 ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350 (523)
Q Consensus 271 a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~ 350 (523)
-|.-.|+.+.-.++-+.....| -+|.....+...|++ +++.++|.+. |--|-
T Consensus 69 Ly~~tg~~e~L~kla~iA~~~g----------------------~~n~af~~~l~lGdv--~~~i~lL~~~----~r~~e 120 (177)
T 3mkq_B 69 LYLVTGDVNKLSKMQNIAQTRE----------------------DFGSMLLNTFYNNST--KERSSIFAEG----GSLPL 120 (177)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHTCH--HHHHHHHHHT----TCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHCc----------------------cHHHHHHHHHHcCCH--HHHHHHHHHC----CChHH
Confidence 4455677766666555444433 467777788889999 9999988654 33343
Q ss_pred HhHHHHHHHHHHhhCCHHHHHHHHHhCCC
Q 035847 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPF 379 (523)
Q Consensus 351 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 379 (523)
...+ ....|.-+.|.++.++++.
T Consensus 121 A~~~------A~t~g~~~~a~~~~~~~~~ 143 (177)
T 3mkq_B 121 AYAV------AKANGDEAAASAFLEQAEV 143 (177)
T ss_dssp HHHH------HHHTTCHHHHHHHHHHTTC
T ss_pred HHHH------HHHcCcHHHHHHHHHHhCC
Confidence 2222 1236778888888888763
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=87.16 E-value=22 Score=34.16 Aligned_cols=66 Identities=3% Similarity=-0.096 Sum_probs=54.5
Q ss_pred CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 213 ~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
.+...|.++-. .+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.++......
T Consensus 275 ~~a~~~~alal------------~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 275 NLSIIYQIKAV------------SALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCHHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHH------------HHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 46667777755 5566799999999999999875 888888777777888999999999999988754
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.03 E-value=1.3 Score=37.04 Aligned_cols=102 Identities=10% Similarity=0.040 Sum_probs=71.3
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCh----------hHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF----------KLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~----------~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
...+.+.+++|++.|+...+.. +-+...|..+-.++...+++ ++|...++..++..
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld------------- 76 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID------------- 76 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-------------
Confidence 3445677899999999988753 22566777666677776654 47777777777632
Q ss_pred hhCCCCCcchHHHHHHHHHhcC-----------CCchHHHHHHHHHhHHhcCCccCHhHHHHHHHH
Q 035847 306 IQGLGTGSFVWNSLIDMYGRCG-----------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360 (523)
Q Consensus 306 ~y~~~p~~~~~n~li~~~~~~g-----------~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~ 360 (523)
+.+...|+.+=.+|...| +. ++|...|++..+. .|+...|..-+..
T Consensus 77 ----P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~--~eA~~~~~kAl~l---~P~~~~y~~al~~ 133 (158)
T 1zu2_A 77 ----PKKDEAVWCIGNAYTSFAFLTPDETEAKHNF--DLATQFFQQAVDE---QPDNTHYLKSLEM 133 (158)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHH--HHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred ----cCcHHHHHHHHHHHHHhcccCcchhhhhccH--HHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 124457888888887764 78 9999999988754 7887766544443
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=85.42 E-value=6.3 Score=35.66 Aligned_cols=188 Identities=10% Similarity=0.060 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 135 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
+.+...++.|+.+-+..+++. |..++.. ...+.+...++.|+.+-+..+++.-..
T Consensus 41 t~L~~A~~~g~~~~v~~Ll~~-----------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 97 (285)
T 1wdy_A 41 TPLHNAVQMSREDIVELLLRH-----------------------GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHT-----------------------TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred cHHHHHHHcCCHHHHHHHHHc-----------------------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 456666777888777766665 4433321 122344555677888877777775333
Q ss_pred ---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHH-------------HHHHHHHHhhccC
Q 035847 213 ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI-------------SLSGVLAACAQVK 276 (523)
Q Consensus 213 ---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~-------------t~~~ll~a~~~~g 276 (523)
+|...++.+.. .+..|+. ++++.+.+.|..|+.. -.+ .+...+..|
T Consensus 98 ~~~~~~~g~t~L~~-------------A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~ 159 (285)
T 1wdy_A 98 VNECDFYGFTAFME-------------AAVYGKV----KALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDAAEKG 159 (285)
T ss_dssp TTCBCTTCCBHHHH-------------HHHTTCH----HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHHHHHT
T ss_pred CCccCcccCCHHHH-------------HHHhCCH----HHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHHHHcC
Confidence 23333444433 2345543 3444555556555432 112 223333445
Q ss_pred ChhHHHHHHHHHHHh-cCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhH--
Q 035847 277 GFKLGKEIHGYVLRH-HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ-- 353 (523)
Q Consensus 277 ~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~t-- 353 (523)
..+. .+.+.+. |..++ .+|..-++.+..+. ..|.. ....++++.+.+. |..|+...
T Consensus 160 ~~~~----v~~Ll~~~~~~~~-------------~~~~~g~t~l~~a~-~~~~~--~~~~~i~~~Ll~~-g~~~~~~~~~ 218 (285)
T 1wdy_A 160 HVEV----LKILLDEMGADVN-------------ACDNMGRNALIHAL-LSSDD--SDVEAITHLLLDH-GADVNVRGER 218 (285)
T ss_dssp CHHH----HHHHHHTSCCCTT-------------CCCTTSCCHHHHHH-HCSCT--TTHHHHHHHHHHT-TCCSSCCCTT
T ss_pred CHHH----HHHHHHhcCCCCC-------------ccCCCCCCHHHHHH-Hcccc--chHHHHHHHHHHc-CCCCCCcCCC
Confidence 5543 3334443 44332 23333444444443 44554 4445666666665 77666421
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhCCCCCCCC
Q 035847 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384 (523)
Q Consensus 354 y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 384 (523)
-.+.+...++.|+.+-+..+++..+..++..
T Consensus 219 g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~ 249 (285)
T 1wdy_A 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDT 249 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHhccCCCcccc
Confidence 2234445567888888888888666555544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.71 E-value=7.3 Score=29.41 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=50.2
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
+=+..+...|++++|..+.+.+.-||+.+|-+|-. .+.|..+++..-+.+|..+| .|....|.
T Consensus 45 IR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--------------~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 45 IRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--------------YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--------------HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--------------HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 33466788999999999999999999999999855 68898888888887887776 34444443
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=83.27 E-value=9.2 Score=34.52 Aligned_cols=235 Identities=8% Similarity=-0.035 Sum_probs=117.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHhh-------Hcc--HHHHhhccCChHHHHHHHHHHHHhcCCCCce--eHhHHHHHHHhc
Q 035847 75 SMMGMYNVLGYYEEIVNLFYLLI-------DEG--VYKACSELKDHRVGKDVYDYMISIKFEGNAC--VKRPVLDMFIKC 143 (523)
Q Consensus 75 ~li~~~~~~g~~~~A~~l~~~m~-------~~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~ 143 (523)
+.+...++.|+.+....+++.-. ..| .|...+..|+.+ +.+.+++.|..++.. ...+.+...++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 34445556676665555544211 011 566666666654 444555567665432 122445566677
Q ss_pred CCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCCCChh-----
Q 035847 144 GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV----- 216 (523)
Q Consensus 144 g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~----- 216 (523)
|+.+-+..+++. |..++.. ...+.+...++.|+.+-+..+++.-..++..
T Consensus 83 ~~~~~v~~Ll~~-----------------------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 139 (285)
T 1wdy_A 83 GSVKLLKLFLSK-----------------------GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139 (285)
T ss_dssp TCHHHHHHHHHT-----------------------TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred CCHHHHHHHHHc-----------------------CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH
Confidence 888777777665 4433321 1123445566788888888888765443321
Q ss_pred --------hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc-CCCCCH---HHHHHHHHHhhccCChhHHHHH
Q 035847 217 --------SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-DMQPNT---ISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 217 --------t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~-g~~p~~---~t~~~ll~a~~~~g~~~~a~~i 284 (523)
.++.|. ..+..|+.+-+ +.+.+. |..++. .-.+.+..++ ..+......++
T Consensus 140 ~~~~~~~~g~t~L~-------------~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~i 201 (285)
T 1wdy_A 140 DQERLRKGGATALM-------------DAAEKGHVEVL----KILLDEMGADVNACDNMGRNALIHAL-LSSDDSDVEAI 201 (285)
T ss_dssp HHHHTTCCCCCHHH-------------HHHHHTCHHHH----HHHHHTSCCCTTCCCTTSCCHHHHHH-HCSCTTTHHHH
T ss_pred HHHhhccCCCcHHH-------------HHHHcCCHHHH----HHHHHhcCCCCCccCCCCCCHHHHHH-HccccchHHHH
Confidence 122332 33455655433 333433 544432 2233343333 34555555677
Q ss_pred HHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHh---HHHHHHHHH
Q 035847 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME---QYCCMVDLL 361 (523)
Q Consensus 285 ~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~---ty~~li~~~ 361 (523)
.+.+.+.|..++. +|..-++ .+...++.|.. +-+. .+.+.+|..++.. -.+ .+...
T Consensus 202 ~~~Ll~~g~~~~~-------------~~~~g~t-~L~~A~~~~~~--~~v~----~Ll~~~g~~~~~~~~~g~t-~l~~A 260 (285)
T 1wdy_A 202 THLLLDHGADVNV-------------RGERGKT-PLILAVEKKHL--GLVQ----RLLEQEHIEINDTDSDGKT-ALLLA 260 (285)
T ss_dssp HHHHHHTTCCSSC-------------CCTTSCC-HHHHHHHTTCH--HHHH----HHHHSSSCCTTCCCTTSCC-HHHHH
T ss_pred HHHHHHcCCCCCC-------------cCCCCCc-HHHHHHHcCCH--HHHH----HHHhccCCCccccCCCCCc-HHHHH
Confidence 7888888776542 2222223 34445566765 4333 3333235555532 122 23334
Q ss_pred HhhCCHHHHHHHHH
Q 035847 362 ARAGQFDDTLNFMK 375 (523)
Q Consensus 362 ~~~g~~~~A~~~~~ 375 (523)
.+.|+.+-+.-+++
T Consensus 261 ~~~~~~~i~~~Ll~ 274 (285)
T 1wdy_A 261 VELKLKKIAELLCK 274 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 45666655444443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=83.22 E-value=0.089 Score=52.25 Aligned_cols=177 Identities=9% Similarity=0.067 Sum_probs=115.2
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG 144 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 144 (523)
....|.-|-.+..+.+++.+|++.|-+-..-. ++.++.+.|.++.-...+....+. ..+..+=+.|+-+|+|.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhC
Confidence 34678889999999999999988874332222 888888888888877777666554 456677788999999998
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-------------
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK------------- 211 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~------------- 211 (523)
++.+-.+++.. ||+.-...+-+-|...|..+.|.-+|..+.
T Consensus 131 rL~elEefl~~--------------------------~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~ 184 (624)
T 3lvg_A 131 RLAELEEFING--------------------------PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG 184 (624)
T ss_dssp SSSTTTSTTSC--------------------------CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCS
T ss_pred cHHHHHHHHcC--------------------------CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 87765554433 333333344455555555555555555443
Q ss_pred -----------CCChhhHHHHHHhhhhcCCccc------------------cchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 212 -----------QKHLVSWNAMLAGYALGGFREE------------------ITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 212 -----------~~~~~t~~~li~~~~~~g~~~~------------------i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
..++.||--+-.++...+.+.- |.-|-+.|.+++-+.+++.-... -+...
T Consensus 185 ~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHm 263 (624)
T 3lvg_A 185 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHM 263 (624)
T ss_dssp GGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCH
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhH
Confidence 1355677777777766665433 77788888888888887765421 23344
Q ss_pred HHHHHHHHHhhc
Q 035847 263 ISLSGVLAACAQ 274 (523)
Q Consensus 263 ~t~~~ll~a~~~ 274 (523)
-+|+-|--.|++
T Consensus 264 GmFTELaILYsK 275 (624)
T 3lvg_A 264 GMFTELAILYSK 275 (624)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.04 E-value=5.1 Score=39.03 Aligned_cols=86 Identities=9% Similarity=0.022 Sum_probs=63.5
Q ss_pred CcchHHHHHHHHH---hcCCchHHHHHHHHhhHc--c-----------------------------HHHHhhccCChHHH
Q 035847 69 NVFSWTSMMGMYN---VLGYYEEIVNLFYLLIDE--G-----------------------------VYKACSELKDHRVG 114 (523)
Q Consensus 69 ~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~--g-----------------------------ll~~~~~~~~~~~a 114 (523)
|+..|..++..-. ..|+.+.|.+.+.+.... | ++.++...|+..++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4445555554332 346777777777665432 2 55666778999999
Q ss_pred HHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 115 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
......+.... +-+...|..+|.+|.+.|+..+|++.|+.
T Consensus 191 ~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 191 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 98888887653 45777999999999999999999999998
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=82.57 E-value=6.7 Score=34.57 Aligned_cols=88 Identities=5% Similarity=-0.087 Sum_probs=49.4
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCcee--HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACV--KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
.|...+..|+.+..+.+++.+.+.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------------------- 68 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA----------------------- 68 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc-----------------------
Confidence 44455556666666666666666665554332 23445556667777766666655
Q ss_pred CCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 179 DLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 179 g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|..++.. ...+.+...++.|+.+-+..+++...
T Consensus 69 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA 103 (241)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 4333221 11233445556777777777776543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.12 E-value=6.9 Score=29.51 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=50.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
+=+..+...|++++|..+.+.+.-||+.+|-+|-. .+.|..+++..-+.+|..+| .|....|.
T Consensus 44 IR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--------------~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 44 IRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--------------WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--------------HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--------------HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 33466788999999999999999999999999855 68898888888888888776 34444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.70 E-value=8.1 Score=31.91 Aligned_cols=83 Identities=14% Similarity=-0.006 Sum_probs=53.7
Q ss_pred hHHHHHHHHhhhCCCCCCcchHHHHHHhccCCC---ChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHH
Q 035847 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLN---NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMY 80 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~ 80 (523)
..+.+-|.+....|. ++..+--.+--++++++ ++++|..+++.+.+... | ..+...+=.|--+|
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~-p-----------~~~rd~lY~LAv~~ 81 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS-K-----------EEQRDYVFYLAVGN 81 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-H-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-c-----------cchHHHHHHHHHHH
Confidence 455566666655554 55555555555666777 66788888888887641 1 01223333344567
Q ss_pred HhcCCchHHHHHHHHhhHc
Q 035847 81 NVLGYYEEIVNLFYLLIDE 99 (523)
Q Consensus 81 ~~~g~~~~A~~l~~~m~~~ 99 (523)
.+.|++++|.+.++...+.
T Consensus 82 ~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHTSCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhc
Confidence 8899999999999887764
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.50 E-value=3 Score=31.64 Aligned_cols=62 Identities=6% Similarity=0.014 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHH
Q 035847 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSL 190 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~l 190 (523)
.=+.++-++.+....+.|++.+..+.+++|-+.+++.-|.++|+. +|. .+.+...+|..+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~-------------------iK~-K~~~~~~iY~~~ 85 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEV-------------------VKD-KAGPHKEIYPYV 85 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HTTTCTTHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHH-------------------HHH-HhcCchhhHHHH
Confidence 334555555666666899999999999999999999999999998 766 455555567777
Q ss_pred HH
Q 035847 191 MD 192 (523)
Q Consensus 191 i~ 192 (523)
++
T Consensus 86 lq 87 (109)
T 1v54_E 86 IQ 87 (109)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 523 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.66 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.45 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.04 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.0 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.57 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.55 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.43 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.4 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.35 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.15 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.85 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 97.77 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 97.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.52 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.47 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.31 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.29 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.06 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.02 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.01 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.97 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.95 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 96.89 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 96.77 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.69 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.6 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.41 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.3 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.15 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.15 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.05 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 95.36 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 95.04 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 95.02 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 94.89 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 94.87 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 94.58 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 94.54 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 94.39 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.38 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 94.29 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 93.76 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 93.74 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.67 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 93.51 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 93.33 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 92.92 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 92.54 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 90.51 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 89.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 88.06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.8e-13 Score=133.18 Aligned_cols=335 Identities=10% Similarity=0.073 Sum_probs=229.6
Q ss_pred chhHHHHHHHHhhhCCCCC-CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDE-CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMY 80 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~ 80 (523)
.+++|+..|++..+. .| +...+..+-.++.+.|++++|...+...++.. +.+..+|..+...|
T Consensus 14 ~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------p~~~~a~~~l~~~~ 77 (388)
T d1w3ba_ 14 DFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--------------PLLAEAYSNLGNVY 77 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHh
Confidence 367899999888765 34 45667777788888999999999999888764 23567888899999
Q ss_pred HhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHH
Q 035847 81 NVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG 151 (523)
Q Consensus 81 ~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 151 (523)
.+.|++++|+..+....... ......................... .................+....+..
T Consensus 78 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
T d1w3ba_ 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHH
Confidence 99999999999998877654 2222223333444444433333332 3334444445555556666666666
Q ss_pred HhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHhhhhc
Q 035847 152 EFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QK-HLVSWNAMLAGYALG 228 (523)
Q Consensus 152 ~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~~~ 228 (523)
.+.+ ... ....+...+..+...+...|+.++|...++... .| +..+|..+..
T Consensus 157 ~~~~-------------------~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~----- 211 (388)
T d1w3ba_ 157 CYLK-------------------AIE-TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN----- 211 (388)
T ss_dssp HHHH-------------------HHH-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-----
T ss_pred HHHH-------------------hhc-cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhh-----
Confidence 6555 222 122345566777777888888888888877653 23 4456777777
Q ss_pred CCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhC
Q 035847 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308 (523)
Q Consensus 229 g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 308 (523)
.+...|++++|+..|++..... ..+...+..+-..+.+.|+.++|.+.++...+..
T Consensus 212 -------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------------- 267 (388)
T d1w3ba_ 212 -------VLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ---------------- 267 (388)
T ss_dssp -------HHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----------------
T ss_pred -------hhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------
Confidence 7777888888888888877653 2345566667777778888888888887776632
Q ss_pred CCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCCCC---
Q 035847 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSSA--- 384 (523)
Q Consensus 309 ~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~--- 384 (523)
+.+..+|..+...|...|+. ++|...|+..... ...+...+..+...+.+.|++++|.+.+++ ....|+..
T Consensus 268 -p~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T d1w3ba_ 268 -PHFPDAYCNLANALKEKGSV--AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp -SSCHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCH--HHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 12345677777888888888 8888888877654 344567777777888888888888888877 45667665
Q ss_pred --------CCCCHHHHHHHHHHHHhhCCCCC
Q 035847 385 --------EPCNPDIAEHAARHLFELEPLSS 407 (523)
Q Consensus 385 --------~~~~~~~~~~~~~~l~~~~~~~~ 407 (523)
..|+.+.|...+++.++++|.++
T Consensus 343 ~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 373 (388)
T d1w3ba_ 343 SNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 67777788888888888877755
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3.7e-11 Score=116.40 Aligned_cols=310 Identities=15% Similarity=0.129 Sum_probs=202.0
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
++++|+..|++..+.. +-+..++..+..++.+.|++++|...+....+... .+...+........
T Consensus 48 ~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 112 (388)
T d1w3ba_ 48 RLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP--------------DFIDGYINLAAALV 112 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccccccccc--------------cccccccccccccc
Confidence 3689999999987753 22456888888999999999999999999887653 23344444444444
Q ss_pred hcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 82 VLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
..+....+........... ........+....+...+....... +.+..++..+...+...|+++.|...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 191 (388)
T d1w3ba_ 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHH
Confidence 5555555555544433322 3333444555566666666555442 23445666667777777888888777
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcC
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGG 229 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g 229 (523)
++++ ++. -+-+..++..+...|...|++++|...|+...+ .+...|..+-.
T Consensus 192 ~~~a------------------l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~------ 245 (388)
T d1w3ba_ 192 FEKA------------------VTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC------ 245 (388)
T ss_dssp HHHH------------------HHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH------
T ss_pred HHHH------------------HHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHH------
Confidence 7761 111 122355677777777777888777777776542 34455666666
Q ss_pred CccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhC
Q 035847 230 FREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308 (523)
Q Consensus 230 ~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 308 (523)
.+.+.|++++|++.|++..+. .| +..++..+...+...|+.++|.+.+....+..
T Consensus 246 ------~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------- 301 (388)
T d1w3ba_ 246 ------VYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---------------- 301 (388)
T ss_dssp ------HHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC----------------
T ss_pred ------HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC----------------
Confidence 667777777888777777663 34 34566677777777777777777777666532
Q ss_pred CCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCCC
Q 035847 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSS 383 (523)
Q Consensus 309 ~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~~ 383 (523)
+.+...+..+...|...|+. ++|...|++..+ +.|+ ..++..+-..|.+.|++++|.+.+++ +.+.|+.
T Consensus 302 -~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 372 (388)
T d1w3ba_ 302 -PTHADSLNNLANIKREQGNI--EEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCH--HHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred -CccchhhhHHHHHHHHCCCH--HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 23445666777777777777 777777777653 3454 45667777777777888888777776 3455643
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=6.8e-09 Score=98.29 Aligned_cols=232 Identities=10% Similarity=-0.023 Sum_probs=162.7
Q ss_pred HHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK 156 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~ 156 (523)
-..+.+.|++++|+..|++..+.. +-+..+|..+...|...|++++|...|+++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 79 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD--------------------------PKHMEAWQYLGTTQAENEQELLAISALRRC 79 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHhh
Confidence 334567777777777777766543 335678888889999999999999999881
Q ss_pred cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhh---HHHHHHhhhhcCCc
Q 035847 157 DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVS---WNAMLAGYALGGFR 231 (523)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t---~~~li~~~~~~g~~ 231 (523)
++. -+-+...+..+...|.+.|++++|.+.++.... |+... ...........+..
T Consensus 80 ------------------l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (323)
T d1fcha_ 80 ------------------LEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 139 (323)
T ss_dssp ------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred ------------------hcc--ccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccc
Confidence 222 122466788888899999999999998887532 22110 00000000000000
Q ss_pred c-ccchhhccCCchHHHHHHHHHHhcC-CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCC
Q 035847 232 E-EITGFTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309 (523)
Q Consensus 232 ~-~i~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 309 (523)
. .+..+...+...+|.+.|.+..+.. -.++..++..+-..+...|+++.|...++...+..
T Consensus 140 ~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------- 202 (323)
T d1fcha_ 140 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR----------------- 202 (323)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-----------------
Confidence 0 0114445567888999998877632 23456778888888899999999999999887642
Q ss_pred CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 310 GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 310 ~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
+-+...|..+-..|...|+. ++|.+.|+...+. .|+ ...|..+..+|.+.|++++|.+.+++
T Consensus 203 p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 265 (323)
T d1fcha_ 203 PNDYLLWNKLGATLANGNQS--EEAVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLE 265 (323)
T ss_dssp TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cccccchhhhhhcccccccc--hhHHHHHHHHHHH---hhccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12456788899999999999 9999999998764 455 67788899999999999999988876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.9e-08 Score=95.03 Aligned_cols=206 Identities=12% Similarity=0.059 Sum_probs=162.8
Q ss_pred chhHHHHHHHHhhhCCCCC-CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDE-CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMY 80 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~ 80 (523)
.+++|+..|++..+. .| +..+|..+-.++...|+++.|...+....+.. .-+...|..+...|
T Consensus 34 ~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 34 DLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--------------PDNQTALMALAVSF 97 (323)
T ss_dssp CHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--------------cccccccccccccc
Confidence 368999999998875 34 46688888889999999999999999988764 23678899999999
Q ss_pred HhcCCchHHHHHHHHhhHcc------------------------HHHHhhccCChHHHHHHHHHHHHhcC-CCCceeHhH
Q 035847 81 NVLGYYEEIVNLFYLLIDEG------------------------VYKACSELKDHRVGKDVYDYMISIKF-EGNACVKRP 135 (523)
Q Consensus 81 ~~~g~~~~A~~l~~~m~~~g------------------------ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ 135 (523)
...|++++|++.+.+..... .+..+...+...++.+.+...++..- .++..++..
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~ 177 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence 99999999999998876532 23333444566778888887776532 234567788
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K 213 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~ 213 (523)
+-..+...|++++|...|+++ +.. .+-+..+|..+-..|.+.|++++|.+.|+...+ |
T Consensus 178 l~~~~~~~~~~~~A~~~~~~a------------------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 237 (323)
T d1fcha_ 178 LGVLFNLSGEYDKAVDCFTAA------------------LSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHhhhhcccccc------------------ccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence 889999999999999999981 222 123467888999999999999999999987653 4
Q ss_pred -ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 214 -HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 214 -~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
+..+|..+-. .|.+.|++++|++.|++..+
T Consensus 238 ~~~~a~~~lg~------------~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 238 GYIRSRYNLGI------------SCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp TCHHHHHHHHH------------HHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHH
Confidence 5567888888 88999999999999998765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.57 E-value=1.6e-06 Score=81.19 Aligned_cols=198 Identities=11% Similarity=0.082 Sum_probs=140.9
Q ss_pred ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHH
Q 035847 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNS 189 (523)
Q Consensus 110 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~ 189 (523)
..+.+..++++.++...+.+...|......+.+.|+++.|..+|++ .-.........+|..
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~-------------------~l~~~~~~~~~~w~~ 139 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR-------------------LLAIEDIDPTLVYIQ 139 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHTSSSSCTHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHH-------------------HHHHhcCChHHHHHH
Confidence 4466777888877654445566788888999999999999999998 322122222457899
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 190 LMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 190 li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
.+....+.|+++.|+++|+...+ | +...|-.... . -+...|+.+.|..+|+.+... ..-+...|.
T Consensus 140 ~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~--~---------e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~ 207 (308)
T d2onda1 140 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL--M---------EYYCSKDKSVAFKIFELGLKK-YGDIPEYVL 207 (308)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH--H---------HHHTSCCHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH--H---------HHHhccCHHHHHHHHHHHHHh-hhhhHHHHH
Confidence 99999999999999999988654 2 2223322221 0 223467889999999998875 333567788
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhc-CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc
Q 035847 267 GVLAACAQVKGFKLGKEIHGYVLRHH-IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345 (523)
Q Consensus 267 ~ll~a~~~~g~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~ 345 (523)
..++...+.|+.+.|+.+|+..++.. ..|+. ....|...+.--..+|+. +.+..+++++.+.+
T Consensus 208 ~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~--------------~~~iw~~~~~fE~~~G~~--~~~~~~~~r~~~~~ 271 (308)
T d2onda1 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK--------------SGEIWARFLAFESNIGDL--ASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG--------------CHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHH--------------HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHC
Confidence 88888889999999999999987743 22221 234788888888888999 99999999887765
Q ss_pred CCccCHhHH
Q 035847 346 NMEPAMEQY 354 (523)
Q Consensus 346 g~~p~~~ty 354 (523)
.-.+.....
T Consensus 272 ~~~~~~~~~ 280 (308)
T d2onda1 272 REEYEGKET 280 (308)
T ss_dssp TTTTSSCHH
T ss_pred ccccccchH
Confidence 444443433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=3.2e-06 Score=79.05 Aligned_cols=171 Identities=11% Similarity=0.091 Sum_probs=129.9
Q ss_pred hhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-C-hhhHHHHHHhhhhcCCccccchhhccCCchHHHHH
Q 035847 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-H-LVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249 (523)
Q Consensus 174 ~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~-~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~l 249 (523)
.++. ....+...|...+..+-+.|+.+.|..+|+.+.+ | + ...|...+. ...+.|+.++|.++
T Consensus 90 al~~-~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~------------~~~~~~~~~~ar~i 156 (308)
T d2onda1 90 AIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMK------------FARRAEGIKSGRMI 156 (308)
T ss_dssp HHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHH------------HHHHHHCHHHHHHH
T ss_pred HHHH-cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHH------------HHHHcCChHHHHHH
Confidence 3443 3344667888899999999999999999998643 3 3 346888888 88889999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHH-HHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCC
Q 035847 250 FSRMIQTDMQPNTISLSGVL-AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGA 328 (523)
Q Consensus 250 f~~M~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~ 328 (523)
|+...+.+.. +...|.... .-+...|+.+.|..+++.+.+.. +.+...|...++.+...|+
T Consensus 157 ~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-----------------p~~~~~w~~y~~~~~~~g~ 218 (308)
T d2onda1 157 FKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----------------GDIPEYVLAYIDYLSHLNE 218 (308)
T ss_dssp HHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-----------------hhhHHHHHHHHHHHHHcCC
Confidence 9999876432 233333222 22344688999999999998742 2245679999999999999
Q ss_pred CchHHHHHHHHHhHHhcCCccC--HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 329 IQKNEGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 329 ~~~~~a~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
. ++|+.+|++..+..+..|+ ...|...+.--.+.|+.+.+.++.+++
T Consensus 219 ~--~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 219 D--NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp H--HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred h--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9 9999999998776445654 357888888778889999999888775
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.43 E-value=1e-05 Score=75.82 Aligned_cols=260 Identities=8% Similarity=-0.020 Sum_probs=173.6
Q ss_pred HHHHHhcCCchHHHHHHHHhhHcc--------------HHHHhhccCChHHHHHHHHHHHHhcCC-CC----ceeHhHHH
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDEG--------------VYKACSELKDHRVGKDVYDYMISIKFE-GN----ACVKRPVL 137 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~g--------------ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li 137 (523)
-..+...|++++|+.+|++-.... +-..+...|++++|...+....+..-. ++ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 345677899999999998765432 345566789999999998887764321 11 23556667
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC----
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---- 212 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---- 212 (523)
..|...|++..|...+.+ +..+..... . ...+ ....+..+-..|...|+++.|...++...+
T Consensus 99 ~~~~~~~~~~~a~~~~~~-----------al~~~~~~~-~-~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEK-----------AFQLINEQH-L-EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 165 (366)
T ss_dssp HHHHHTTCHHHHHHHHHH-----------HHHHHHHTT-C-TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHhHhcc-c-chhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence 788889999999998887 111111110 1 1122 234566677889999999999988876532
Q ss_pred ----CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCCC--HHHHHHHHHHhhccCChhHHH
Q 035847 213 ----KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQPN--TISLSGVLAACAQVKGFKLGK 282 (523)
Q Consensus 213 ----~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~ 282 (523)
....++..+.. .+...++..++...+.+.... +..+. ...+..+...+...|+.+.|.
T Consensus 166 ~~~~~~~~~~~~~~~------------~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 233 (366)
T d1hz4a_ 166 YQPQQQLQCLAMLIQ------------CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 233 (366)
T ss_dssp SCGGGGHHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhHHHHHHHHHH------------HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHH
Confidence 12234444445 677788899998888776542 11121 233455556677889999999
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh---cCCccC-HhHHHHHH
Q 035847 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE---YNMEPA-MEQYCCMV 358 (523)
Q Consensus 283 ~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~---~g~~p~-~~ty~~li 358 (523)
..+....+.....+ ......+..+...|...|+. ++|...++..... .+..|+ ...+..+-
T Consensus 234 ~~~~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 298 (366)
T d1hz4a_ 234 NWLRHTAKPEFANN-------------HFLQGQWRNIARAQILLGEF--EPAEIVLEELNENARSLRLMSDLNRNLLLLN 298 (366)
T ss_dssp HHHHHSCCCCCTTC-------------GGGHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccc-------------hHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhhcccChHHHHHHHHHH
Confidence 88776544221110 11234566788899999999 9999999877532 245555 46788888
Q ss_pred HHHHhhCCHHHHHHHHHh
Q 035847 359 DLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~ 376 (523)
..|.+.|++++|.+.+++
T Consensus 299 ~~~~~~g~~~~A~~~l~~ 316 (366)
T d1hz4a_ 299 QLYWQAGRKSDAQRVLLD 316 (366)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 999999999999999876
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=2.3e-05 Score=73.32 Aligned_cols=289 Identities=9% Similarity=-0.016 Sum_probs=190.8
Q ss_pred HhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------
Q 035847 30 QRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------- 100 (523)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------- 100 (523)
..+...|+++.|.++++.........+. .....+++.+-..|...|++++|+..|++.....
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~---------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWF---------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCc---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 4456889999999999998765321000 0013467778889999999999999999876532
Q ss_pred ------HHHHhhccCChHHHHHHHHHHHHhc----CCCC---ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhH
Q 035847 101 ------VYKACSELKDHRVGKDVYDYMISIK----FEGN---ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167 (523)
Q Consensus 101 ------ll~~~~~~~~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ 167 (523)
+...+...|++..+...+....... ..+. ...+..+-..|...|+++.|...+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~----------- 159 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG----------- 159 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHH-----------
Confidence 4556677899999998888766432 1111 124555667888999999999999881
Q ss_pred hhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-------CC---ChhhHHHHHHhhhhcCCccccchh
Q 035847 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-------QK---HLVSWNAMLAGYALGGFREEITGF 237 (523)
Q Consensus 168 ~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~-------~~---~~~t~~~li~~~~~~g~~~~i~~~ 237 (523)
... ....+.......+..+...+...++...+...+.... .. ....+..+.. .+
T Consensus 160 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~~ 223 (366)
T d1hz4a_ 160 ---IEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI------------YW 223 (366)
T ss_dssp ---HHH-TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH------------HH
T ss_pred ---HHH-hhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH------------HH
Confidence 111 1111333345566666777888888888777665432 11 1123455555 77
Q ss_pred hccCCchHHHHHHHHHHhcCCCC---CHHHHHHHHHHhhccCChhHHHHHHHHHHHh----cCCchHHHHhHHHhhhCCC
Q 035847 238 TQYGDGETALEFFSRMIQTDMQP---NTISLSGVLAACAQVKGFKLGKEIHGYVLRH----HIQLSTGVGIALISIQGLG 310 (523)
Q Consensus 238 ~~~g~~~~A~~lf~~M~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~----g~~~~~~~~~~li~~y~~~ 310 (523)
...|++++|...+.......... ...++..+..++...|+.+.|.+.++..... +..|+
T Consensus 224 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------- 289 (366)
T d1hz4a_ 224 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD-------------- 289 (366)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--------------
T ss_pred HhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH--------------
Confidence 78899999999998876533222 2345566777889999999999999887653 22221
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh---cCCcc----CHhHHHHHHHHHHhhCCHHHHH
Q 035847 311 TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE---YNMEP----AMEQYCCMVDLLARAGQFDDTL 371 (523)
Q Consensus 311 p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~---~g~~p----~~~ty~~li~~~~~~g~~~~A~ 371 (523)
....|..+-..|...|+. ++|.+.|++..+. .|... ....+..++..+...++++++.
T Consensus 290 -~~~~~~~la~~~~~~g~~--~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 290 -LNRNLLLLNQLYWQAGRK--SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp -HHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred -HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 234677788899999999 9999999876442 12221 1233445555666666665554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.4e-05 Score=74.87 Aligned_cols=214 Identities=9% Similarity=0.039 Sum_probs=145.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC-CHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG-RMEMA 149 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A 149 (523)
..|+.+-..+.+.+.+++|+.++++..+.. +-+..+|+..-..+.+.| ++++|
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--------------------------P~~~~a~~~r~~~l~~l~~~~~ea 97 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN--------------------------AANYTVWHFRRVLLKSLQKDLHEE 97 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC--------------------------CCChHHHHHHHHHHHHhCcCHHHH
Confidence 345555556667777777777777766632 335557888888888876 48999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhh
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYA 226 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~ 226 (523)
+..+++ .-. .-+-+..+|+.+-..+.+.|+.++|...|+.+.+ .+...|+.+..
T Consensus 98 l~~~~~-------------------al~-~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~--- 154 (315)
T d2h6fa1 98 MNYITA-------------------IIE-EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW--- 154 (315)
T ss_dssp HHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH---
T ss_pred HHHHHH-------------------HHH-HHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHH---
Confidence 999988 322 1233577899999999999999999999998763 46788999988
Q ss_pred hcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC------hhHHHHHHHHHHHhcCCchHHHH
Q 035847 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG------FKLGKEIHGYVLRHHIQLSTGVG 300 (523)
Q Consensus 227 ~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~------~~~a~~i~~~~~~~g~~~~~~~~ 300 (523)
.+.+.|++++|++.|+...+... -+...|+.+-..+.+.+. +++|.+.+...++..
T Consensus 155 ---------~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-------- 216 (315)
T d2h6fa1 155 ---------VIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-------- 216 (315)
T ss_dssp ---------HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--------
T ss_pred ---------HHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC--------
Confidence 88899999999999999988532 245566655444444443 456666666665532
Q ss_pred hHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh
Q 035847 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363 (523)
Q Consensus 301 ~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 363 (523)
+.|...|+.+-..+...| . +++.+.++...+..-...+...+..+...|..
T Consensus 217 ---------P~~~~~~~~l~~ll~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 217 ---------PHNESAWNYLKGILQDRG-L--SKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp ---------TTCHHHHHHHHHHHTTTC-G--GGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred ---------CCchHHHHHHHHHHHhcC-h--HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 225567777766555444 4 56777777666541112234566667666643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=5e-05 Score=70.87 Aligned_cols=199 Identities=11% Similarity=0.051 Sum_probs=143.7
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCC-chHHHHHHHHhhHccHH
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY-YEEIVNLFYLLIDEGVY 102 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~gll 102 (523)
.|+-+-..+.+.+.+++|.++++.+++.. .-+..+|+..-..+...|+ +++|+..++...+..
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--------------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-- 108 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN--------------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-- 108 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC--------------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--
Confidence 34455455667889999999999999875 2367789988888887764 899999998876643
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 182 (523)
+-+..+|+.+-..+.+.|++++|+..|++ .-. --+.
T Consensus 109 ------------------------p~~~~a~~~~~~~~~~l~~~~eAl~~~~k-------------------al~-~dp~ 144 (315)
T d2h6fa1 109 ------------------------PKNYQVWHHRRVLVEWLRDPSQELEFIAD-------------------ILN-QDAK 144 (315)
T ss_dssp ------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHH-------------------HHH-HCTT
T ss_pred ------------------------HhhhhHHHHHhHHHHhhccHHHHHHHHhh-------------------hhh-hhhc
Confidence 44677899999999999999999999998 222 1233
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCC
Q 035847 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~ 259 (523)
+..+|+.+...+.+.|+.++|...|+...+ .+...|+.+-..+.+.+ .+...+.+++|++.+....+. .
T Consensus 145 n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~------~~~~~~~~~~ai~~~~~al~~--~ 216 (315)
T d2h6fa1 145 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT------GYNDRAVLEREVQYTLEMIKL--V 216 (315)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CSCSHHHHHHHHHHHHHHHHH--S
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcc------ccchhhhhHHhHHHHHHHHHh--C
Confidence 578899999999999999999999988764 35667876655221111 122334467899999888774 3
Q ss_pred C-CHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 260 P-NTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 260 p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
| |...|..+...+.. ...+++.+.+....+.
T Consensus 217 P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 217 PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDL 248 (315)
T ss_dssp TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence 4 56666666555544 4467777877777664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=0.00015 Score=64.92 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=120.3
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
.+|..+-..|.+.|++++|...|+++ ++. -+-+..+|+.+-.+|.+.|++++|...|++.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~a------------------l~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 97 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQA------------------LAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 97 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHh------------------hcc--CCCCHHHHhhhchHHHHHHHHHHhhhhhhHH
Confidence 35666778899999999999999981 322 1235778999999999999999999999987
Q ss_pred CC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 035847 211 KQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287 (523)
Q Consensus 211 ~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~ 287 (523)
.+ | +..+|..+-. .|...|++++|++.|+...+... .+......+..+..+.+..+....+...
T Consensus 98 l~~~p~~~~a~~~lg~------------~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 98 LELDPTYNYAHLNRGI------------ALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQH 164 (259)
T ss_dssp HHHCTTCTHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHH------------HHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 53 4 4567888877 88899999999999999887532 2333333333344444444444444333
Q ss_pred HHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc----CCccC-HhHHHHHHHHHH
Q 035847 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY----NMEPA-MEQYCCMVDLLA 362 (523)
Q Consensus 288 ~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~----g~~p~-~~ty~~li~~~~ 362 (523)
.... .++...++ ++..+ .+.. ... ..++.....+ ...|+ ..+|..+-..+.
T Consensus 165 ~~~~------------------~~~~~~~~-~~~~~--~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 220 (259)
T d1xnfa_ 165 FEKS------------------DKEQWGWN-IVEFY--LGNI--SEQ-TLMERLKADATDNTSLAEHLSETNFYLGKYYL 220 (259)
T ss_dssp HHHS------------------CCCSTHHH-HHHHH--TTSS--CHH-HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcc------------------chhhhhhh-HHHHH--HHHH--HHH-HHHHHHHHHHHHhhhcCcccHHHHHHHHHHHH
Confidence 3331 11122222 22222 2222 111 1122221110 12233 246666778888
Q ss_pred hhCCHHHHHHHHHh-CCCCCC
Q 035847 363 RAGQFDDTLNFMKK-MPFEPS 382 (523)
Q Consensus 363 ~~g~~~~A~~~~~~-m~~~p~ 382 (523)
..|++++|.+.+++ +...|+
T Consensus 221 ~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 221 SLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HTTCHHHHHHHHHHHHTTCCT
T ss_pred HCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999887 344554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=0.00061 Score=60.61 Aligned_cols=114 Identities=6% Similarity=-0.058 Sum_probs=77.3
Q ss_pred chhHHHHHHHHhhhCCC-CC--CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNP-DE--CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMG 78 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~ 78 (523)
+.+.|+.-+.+...... .+ ...+|..+-.++.+.|+++.|...+...++.. +.+..+|+.+-.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--------------p~~~~a~~~lg~ 79 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--------------PDMPEVFNYLGI 79 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--------------CCCHHHHhhhch
Confidence 34566666777665422 22 12345555567778899999999999888764 236788888989
Q ss_pred HHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 79 MYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 79 ~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
.|.+.|++++|++.|++..+.. +-+..++..+-..|...|++++|...|++
T Consensus 80 ~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 130 (259)
T d1xnfa_ 80 YLTQAGNFDAAYEAFDSVLELD--------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLA 130 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHH--------------------------hhhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999998877643 22344555555666666666666666665
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.77 E-value=0.00015 Score=67.97 Aligned_cols=244 Identities=6% Similarity=-0.075 Sum_probs=137.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhcc-------CChHHHHHHHHHHHHhcCCCCceeHh
Q 035847 74 TSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSEL-------KDHRVGKDVYDYMISIKFEGNACVKR 134 (523)
Q Consensus 74 ~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~-------~~~~~a~~~~~~m~~~g~~p~~~~~~ 134 (523)
+.++...-.....++|++++++..+.. ++...... ++++.+...++..++.. +.+...|.
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 333333333344577888887765433 22333322 33556666677666553 33455555
Q ss_pred HHHHHHHhcC--CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHH-HHHHHhcCChHHHHHHHhcCC
Q 035847 135 PVLDMFIKCG--RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSL-MDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 135 ~li~~~~~~g--~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~l-i~~~~k~g~~~~A~~vf~~m~ 211 (523)
.+...+...+ ++++|...+.+ ++.. -.++...+..+ -..+...+..++|...++...
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~------------------al~~--~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i 171 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCAR------------------FLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI 171 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHH------------------HHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred HhhHHHHHhccccHHHHHHHHHH------------------HHhh--CchhhhhhhhHHHHHHHhccccHHHHHHHHHHH
Confidence 5555555554 36677777766 1221 12234444333 355556777888888877765
Q ss_pred C---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHH
Q 035847 212 Q---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288 (523)
Q Consensus 212 ~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~ 288 (523)
+ .+..+|+.+-. .+.+.|++++|...+...... .|+.. .+...+...+..+.+...+...
T Consensus 172 ~~~p~~~~a~~~l~~------------~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~ 234 (334)
T d1dcea1 172 TRNFSNYSSWHYRSC------------LLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRW 234 (334)
T ss_dssp TTTCCCHHHHHHHHH------------HHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHH
T ss_pred HcCCCCHHHHHHHHH------------HHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHH
Confidence 4 24456777666 555555555554443332221 11111 1122233344445555554444
Q ss_pred HHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCH
Q 035847 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQF 367 (523)
Q Consensus 289 ~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~ 367 (523)
... ..++...+..+...+...|+. ++|...|....+. .|+ ...|..+...+.+.|++
T Consensus 235 l~~-----------------~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~ 292 (334)
T d1dcea1 235 LLG-----------------RAEPLFRCELSVEKSTVLQSE--LESCKELQELEPE---NKWCLLTIILLMRALDPLLYE 292 (334)
T ss_dssp HHS-----------------CCCCSSSCCCCHHHHHHHHHH--HHHHHHHHHHCTT---CHHHHHHHHHHHHHHCTGGGH
T ss_pred HHh-----------------CcchhhHHHHHHHHHHHHhhH--HHHHHHHHHHHhh---CchHHHHHHHHHHHHHHCCCH
Confidence 432 134556667777788888888 8888888766543 444 57778888888899999
Q ss_pred HHHHHHHHhC
Q 035847 368 DDTLNFMKKM 377 (523)
Q Consensus 368 ~~A~~~~~~m 377 (523)
++|.+.+++.
T Consensus 293 ~eA~~~~~~a 302 (334)
T d1dcea1 293 KETLQYFSTL 302 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888763
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.59 E-value=0.00014 Score=68.16 Aligned_cols=233 Identities=7% Similarity=-0.053 Sum_probs=145.2
Q ss_pred hHHHHHHHHhhhCCCCCCcch-HH---HHHHhccCCC-------ChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcch
Q 035847 4 KNVTLLLQSMDLTNPDECTVT-YA---LIFQRCPKLN-------NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFS 72 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~~t-~~---~ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~ 72 (523)
++|++++....+. .|+..+ |+ .++......+ .++.+..+++...+.. ..+...
T Consensus 46 ~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--------------pk~~~~ 109 (334)
T d1dcea1 46 ESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--------------PKSYGT 109 (334)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--------------TTCHHH
T ss_pred HHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--------------CCcHHH
Confidence 6889999988764 576654 22 2333333333 3667777788777664 347778
Q ss_pred HHHHHHHHHhcCC--chHHHHHHHHhhHcc----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHH
Q 035847 73 WTSMMGMYNVLGY--YEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140 (523)
Q Consensus 73 ~~~li~~~~~~g~--~~~A~~l~~~m~~~g----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (523)
|..+..++...++ +++|+..+.+..... .-..+...+..+.|.+.++..++.. +-+...|+.+-..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~ 188 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 8888777777665 789999998886654 2234445788888988888887664 34667788888888
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhh
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK---QKHLVS 217 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~---~~~~~t 217 (523)
.+.|++++|...+.+ ... +.|+ ...+...+...+..+++...+.... .++...
T Consensus 189 ~~~~~~~~A~~~~~~-------------------~~~--~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~ 244 (334)
T d1dcea1 189 PQLHPQPDSGPQGRL-------------------PEN--VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFR 244 (334)
T ss_dssp HHHSCCCCSSSCCSS-------------------CHH--HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSS
T ss_pred HHhcCHHHHHHHHHH-------------------hHH--hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhH
Confidence 888888877666655 111 0111 1112233444555555555554432 233344
Q ss_pred HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 218 ~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
+..+.. .+...|+..+|++.|.+..... | +..++..+..++.+.|+.++|.+.++.+++.
T Consensus 245 ~~~l~~------------~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 245 CELSVE------------KSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp CCCCHH------------HHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHH------------HHHHHhhHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 555555 5556667777777776655432 3 3455566666777777777777777777663
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.52 E-value=0.00087 Score=61.17 Aligned_cols=140 Identities=12% Similarity=0.060 Sum_probs=77.8
Q ss_pred CchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcC----CC-CceeHhHHHHHHHhcCCHHHHHHHhhhcccc
Q 035847 85 YYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF----EG-NACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159 (523)
Q Consensus 85 ~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~----~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 159 (523)
++++|.++|.+ ....+...+++++|.+.|.+..+... .+ -..+|+.+-.+|.+.|++++|...++++
T Consensus 32 ~~~~Aa~~y~~-----aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a--- 103 (290)
T d1qqea_ 32 KFEEAADLCVQ-----AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA--- 103 (290)
T ss_dssp HHHHHHHHHHH-----HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred cHHHHHHHHHH-----HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh---
Confidence 35566666655 33445556666666666665554311 11 1357888889999999999999999881
Q ss_pred ccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh-cCChHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcC
Q 035847 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK-CRYLKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGG 229 (523)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k-~g~~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g 229 (523)
..+.. ..........++..+...|-+ .|++++|...++...+ .+ ..+|+.+..
T Consensus 104 --------~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~------ 166 (290)
T d1qqea_ 104 --------IQIFT---HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD------ 166 (290)
T ss_dssp --------HHHHH---HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------
T ss_pred --------hHHhh---hcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHH------
Confidence 11111 110111223445555555644 5888888777765321 11 123444444
Q ss_pred CccccchhhccCCchHHHHHHHHHHh
Q 035847 230 FREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 230 ~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.|.+.|++++|++.|++...
T Consensus 167 ------~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 167 ------LKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp ------HHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHcChHHHHHHHHHHHHH
Confidence 55555666666666655443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.47 E-value=0.032 Score=51.27 Aligned_cols=291 Identities=11% Similarity=0.089 Sum_probs=167.7
Q ss_pred CCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 19 DECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 19 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
.||..--..+.+-|-+.|.++.|..++.. ..-|.-++..+.+.+++..|.+++.+...
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~----------------------~~d~~rl~~~~v~l~~~~~avd~~~k~~~ 68 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNN----------------------VSNFGRLASTLVHLGEYQAAVDGARKANS 68 (336)
T ss_dssp CC----------------CTTTHHHHHHH----------------------TTCHHHHHHHHHTTTCHHHHHHHHHHHTC
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHh----------------------CCCHHHHHHHHHhhccHHHHHHHHHHcCC
Confidence 35666666777888888989888888774 34477788888888999988888865543
Q ss_pred cc----HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhh
Q 035847 99 EG----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174 (523)
Q Consensus 99 ~g----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~ 174 (523)
.. +..+|........+ .+.......+......++..|-..|.+++...+++.
T Consensus 69 ~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~------------------- 124 (336)
T d1b89a_ 69 TRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEA------------------- 124 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHH-------------------
Confidence 22 55555554444332 222223344555667899999999999999999987
Q ss_pred hhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccc-cchhhccCCchHHHHHHHHH
Q 035847 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-ITGFTQYGDGETALEFFSRM 253 (523)
Q Consensus 175 ~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~-i~~~~~~g~~~~A~~lf~~M 253 (523)
.-. .-.++..+++-++..|+|.+. ++..+.+.... +.....-++..+-+.+..++ +--|.+.|++++|+.+.-+
T Consensus 125 ~~~-~~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s--~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~- 199 (336)
T d1b89a_ 125 ALG-LERAHMGMFTELAILYSKFKP-QKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN- 199 (336)
T ss_dssp HTT-STTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred HHc-CCccchHHHHHHHHHHHHhCh-HHHHHHHHhcc--ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-
Confidence 211 124567788999999998764 33333333321 22222333331111111111 1155566666665544321
Q ss_pred HhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHH
Q 035847 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333 (523)
Q Consensus 254 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~ 333 (523)
-.|+..-....+..+.+..+.+...++.....+. .|+. .+.|+...+ ....-.-++.-+-+.+++ .-
T Consensus 200 ----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~--i~~lL~~v~---~~~d~~r~V~~~~k~~~l--~l 266 (336)
T d1b89a_ 200 ----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLL--LNDLLMVLS---PRLDHTRAVNYFSKVKQL--PL 266 (336)
T ss_dssp ----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGG--HHHHHHHHG---GGCCHHHHHHHHHHTTCT--TT
T ss_pred ----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHH--HHHHHHHhc---cCCCHHHHHHHHHhcCCc--HH
Confidence 1233333445566677778888877777766653 2321 222222211 122335677888888888 88
Q ss_pred HHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 334 a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
...+++..+.. | +....+++.+.|...++++.-.+.+++-
T Consensus 267 i~p~Le~v~~~-n---~~~vn~al~~lyie~~d~~~l~~~i~~~ 306 (336)
T d1b89a_ 267 VKPYLRSVQNH-N---NKSVNESLNNLFITEEDYQALRTSIDAY 306 (336)
T ss_dssp THHHHHHHHTT-C---CHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHc-C---hHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 88888876654 5 3468999999999999988888777764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.0021 Score=54.62 Aligned_cols=123 Identities=10% Similarity=0.019 Sum_probs=95.2
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CC
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KH 214 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~ 214 (523)
..+...|+++.|++.|++ + ..|+..+|..+-..|.+.|++++|.+.|++..+ .+
T Consensus 13 ~~~~~~~d~~~Al~~~~~-------------------i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~ 69 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSA-------------------V----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 69 (192)
T ss_dssp HHHHHTTCHHHHHHHHHT-------------------S----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHCCCHHHHHHHHHh-------------------c----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh
Confidence 345678889999988887 3 356778888999999999999999999997653 45
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc------------CC--CCC-HHHHHHHHHHhhccCChh
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT------------DM--QPN-TISLSGVLAACAQVKGFK 279 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~------------g~--~p~-~~t~~~ll~a~~~~g~~~ 279 (523)
...|+.+-. .|.+.|++++|++.|++-... |. +++ ..++..+-.++.+.|+.+
T Consensus 70 ~~a~~~~g~------------~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~ 137 (192)
T d1hh8a_ 70 AVAYFQRGM------------LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK 137 (192)
T ss_dssp HHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHHHH------------HHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHH
Confidence 678888888 889999999999999987642 11 111 244555666788999999
Q ss_pred HHHHHHHHHHHhcCCc
Q 035847 280 LGKEIHGYVLRHHIQL 295 (523)
Q Consensus 280 ~a~~i~~~~~~~g~~~ 295 (523)
+|.+.+....+....+
T Consensus 138 ~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 138 KAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHhcCCCc
Confidence 9999998887654443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.0059 Score=51.66 Aligned_cols=131 Identities=17% Similarity=0.073 Sum_probs=97.2
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 035847 192 DFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271 (523)
Q Consensus 192 ~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 271 (523)
..+...|+++.|.+.|+++..|+...|..+-. .|.+.|++++|++.|++-.+.. +-+...|..+-.+
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~------------~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~ 79 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGC------------MYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 79 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHH------------HHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHH
Confidence 45678899999999999999999999998888 8899999999999999998753 2246778888888
Q ss_pred hhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh--CCC--CC-cchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ--GLG--TG-SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 272 ~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y--~~~--p~-~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
+.+.|+.++|.+.++..++..-. +. .++.. +.. ++ ..++..+-.+|.+.|+. ++|.+.|....+
T Consensus 80 ~~~~g~~~~A~~~~~kAl~~~~~-n~-----~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~--~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 80 YYQTEKYDLAIKDLKEALIQLRG-NQ-----LIDYKILGLQFKLFACEVLYNIAFMYAKKEEW--KKAEEQLALATS 148 (192)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTT-CS-----EEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHT
T ss_pred HHhhccHHHHHHHHHHHHHhCcc-Cc-----hHHHHHhhhhcccchHHHHHHHHHHHHHCCCH--HHHHHHHHHHHh
Confidence 99999999999999888763211 00 00000 111 11 12344566678888888 888888877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.06 E-value=0.011 Score=53.56 Aligned_cols=166 Identities=11% Similarity=0.025 Sum_probs=108.3
Q ss_pred HHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----C
Q 035847 191 MDFYAKCRYLKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----D 257 (523)
Q Consensus 191 i~~~~k~g~~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g 257 (523)
-..|-..|++++|...|.+..+ .+ ..+|+.+-. .|.+.|++++|++.|++..+. |
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~------------~y~~~~~~~~A~~~~~~a~~~~~~~~ 111 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYK------------CFKSGGNSVNAVDSLENAIQIFTHRG 111 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH------------HHHHhCCcHHHHHHHHHhhHHhhhcc
Confidence 4567777888888777765432 12 246777777 888899999999999876542 1
Q ss_pred C-CCCHHHHHHHHHHh-hccCChhHHHHHHHHHHHhcCC-chHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHH
Q 035847 258 M-QPNTISLSGVLAAC-AQVKGFKLGKEIHGYVLRHHIQ-LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334 (523)
Q Consensus 258 ~-~p~~~t~~~ll~a~-~~~g~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a 334 (523)
- .....++..+...| ...|+++.|.+.+....+.--. .+... -..+|+.+...|...|+. ++|
T Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~------------~~~~~~~la~~~~~~g~y--~~A 177 (290)
T d1qqea_ 112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL------------SNKCFIKCADLKALDGQY--IEA 177 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH------------HHHHHHHHHHHHHHTTCH--HHH
T ss_pred cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhh------------hhhHHHHHHHHHHHcChH--HHH
Confidence 1 11234455555556 3469999999999887652100 00000 124678899999999999 999
Q ss_pred HHHHHHhHHhcCCccC----H-hHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCC
Q 035847 335 WRYFEMMKKEYNMEPA----M-EQYCCMVDLLARAGQFDDTLNFMKKM-PFEPS 382 (523)
Q Consensus 335 ~~~~~~m~~~~g~~p~----~-~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 382 (523)
..+|+.......-.|. . ..|..++..+...|+++.|.+.+++. ...|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~ 231 (290)
T d1qqea_ 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (290)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999998764222221 1 23445555677889999999999986 34443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.0033 Score=48.39 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=70.9
Q ss_pred HhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccC
Q 035847 30 QRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELK 109 (523)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~ 109 (523)
+.+.+.|++++|...+...++.. +.+...|+.+-.+|.+.|++++|+..|.+..+.+
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~--------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------- 67 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD--------------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--------- 67 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--------------CcchhhhhcccccccccccccccchhhhhHHHhc---------
Confidence 34556788888888888888764 3467788888888888888888888888877654
Q ss_pred ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 110 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+...|..+-.+|...|++++|...|++
T Consensus 68 -----------------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 96 (117)
T d1elwa_ 68 -----------------PDWGKGYSRKAAALEFLNRFEEAKRTYEE 96 (117)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------cchhhHHHHHHHHHHHccCHHHHHHHHHH
Confidence 56788899999999999999999999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.0019 Score=49.91 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=69.9
Q ss_pred HHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---C
Q 035847 137 LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---K 213 (523)
Q Consensus 137 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~ 213 (523)
-+.+.+.|++++|...|++ .++. -+.+...|..+-.+|.+.|+.++|...++...+ .
T Consensus 10 g~~~~~~g~~~eAi~~~~~------------------al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 69 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSE------------------AIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 69 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHH------------------HHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHH------------------HHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccc
Confidence 3456777888888888888 1332 233566788888888888888888888887642 4
Q ss_pred ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
+...|..+-. .+...|++++|+..|+...+ ..|+...+.
T Consensus 70 ~~~~~~~~g~------------~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~ 108 (117)
T d1elwa_ 70 WGKGYSRKAA------------ALEFLNRFEEAKRTYEEGLK--HEANNPQLK 108 (117)
T ss_dssp CHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHT--TCTTCHHHH
T ss_pred hhhHHHHHHH------------HHHHccCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 6667877777 88888888888888888876 456554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.97 E-value=0.0025 Score=53.98 Aligned_cols=95 Identities=12% Similarity=-0.021 Sum_probs=68.9
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
+....-.=..|.+.|++++|+..|.+..... +.+...|+.+-.+|.+.|+++.|
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--------------------------p~~~~~~~~lg~~y~~~~~~~~A 57 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--------------------------PLVAVYYTNRALCYLKMQQPEQA 57 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHhHHHHHhhhhhhhhh
Confidence 3333344445555666666666665544422 45677899999999999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
...|++ .- .+.| +...|..+-.+|.+.|++++|...|+...
T Consensus 58 i~~~~~-------------------al--~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 58 LADCRR-------------------AL--ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHH-------------------HT--TSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHH-------------------HH--HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999998 22 2455 46688889999999999999999998643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.95 E-value=0.0019 Score=54.73 Aligned_cols=96 Identities=7% Similarity=-0.045 Sum_probs=78.5
Q ss_pred CCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 035847 128 GNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207 (523)
Q Consensus 128 p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf 207 (523)
|+...+-..-+.|.+.|++++|...|+++ +.. -+.+...|+.+-.+|.+.|++++|...|
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~ka------------------l~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~ 61 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRA------------------ITR--NPLVAVYYTNRALCYLKMQQPEQALADC 61 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHH
Confidence 45555566678899999999999999981 333 2346778999999999999999999999
Q ss_pred hcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 208 SKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 208 ~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
+...+ | ++.+|..+-. .|.+.|++++|+..|+...+
T Consensus 62 ~~al~l~p~~~~a~~~lg~------------~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 62 RRALELDGQSVKAHFFLGQ------------CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTSCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHH
Confidence 98764 5 4567888888 89999999999999998765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.004 Score=50.80 Aligned_cols=86 Identities=13% Similarity=0.021 Sum_probs=67.0
Q ss_pred HhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccC
Q 035847 30 QRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELK 109 (523)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~ 109 (523)
+.+.+.|+++.|...|...++.. ..+...|..+-..|.+.|++++|+..|++..+..
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~--------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--------- 74 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN--------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--------- 74 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred HHHHHcCCHHHHHHHhhhccccc--------------hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc---------
Confidence 34557888888888888888764 2467788888888888888888888888776643
Q ss_pred ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 110 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+-+..+|..+..+|...|++++|...|++
T Consensus 75 -----------------p~~~~a~~~~g~~~~~~g~~~eA~~~~~~ 103 (159)
T d1a17a_ 75 -----------------KKYIKGYYRRAASNMALGKFRAALRDYET 103 (159)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33557888888888999999999888888
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.0086 Score=48.67 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=76.6
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
.|.+.|++++|+..|++..+.. +-+...|..+-.++...|+++.|.+.+...++.. +.+...
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-----------------p~~~~a 80 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----------------KKYIKG 80 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHH
T ss_pred HHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-----------------ccchHH
Confidence 6778999999999999998853 2256777888888999999999999999998743 224568
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~ 350 (523)
|..+..+|...|+. ++|...|+...+. .|+
T Consensus 81 ~~~~g~~~~~~g~~--~eA~~~~~~a~~~---~p~ 110 (159)
T d1a17a_ 81 YYRRAASNMALGKF--RAALRDYETVVKV---KPH 110 (159)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHHHHHH---STT
T ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHc---CCC
Confidence 99999999999999 9999999998865 455
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.69 E-value=0.0027 Score=48.56 Aligned_cols=88 Identities=10% Similarity=-0.088 Sum_probs=65.6
Q ss_pred HHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 76 MMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 76 li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+-..+.+.|++++|+..|++..... +-+..+|..+-..|.+.|++++|...|++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 75 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE--------------------------PEREEAWRSLGLTQAENEKDGLAIIALNH 75 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc--------------------------cccchhhhhhhhhhhhhhhHHHhhccccc
Confidence 3445566677777777776655532 33577888899999999999999999988
Q ss_pred ccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
.-. --+.+..++..+-..|.+.|+.++|.+.|++
T Consensus 76 -------------------al~-~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 76 -------------------ARM-LDPKDIAVHAALAVSHTNEHNANAALASLRA 109 (112)
T ss_dssp -------------------HHH-HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------ccc-cccccccchHHHHHHHHHCCCHHHHHHHHHH
Confidence 222 1233577888899999999999999998875
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.60 E-value=0.008 Score=50.13 Aligned_cols=69 Identities=10% Similarity=0.219 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-----
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ----- 255 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~----- 255 (523)
...+..+...+.+.|+.++|...++...+ | +...|..++. +|.+.|+..+|++.|++...
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~------------al~~~Gr~~eAl~~y~~~~~~L~~e 134 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLIT------------AYYLSDRQSDALGAYRRVKTTLADD 134 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH------------HHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHH------------HHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999998763 3 6779999999 99999999999999999744
Q ss_pred cCCCCCHHH
Q 035847 256 TDMQPNTIS 264 (523)
Q Consensus 256 ~g~~p~~~t 264 (523)
-|+.|...|
T Consensus 135 LG~~P~~~l 143 (179)
T d2ff4a2 135 LGIDPGPTL 143 (179)
T ss_dssp HSCCCCHHH
T ss_pred hCCCcCHHH
Confidence 599998766
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.60 E-value=0.0025 Score=48.74 Aligned_cols=87 Identities=9% Similarity=-0.107 Sum_probs=74.4
Q ss_pred HHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhcc
Q 035847 29 FQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSEL 108 (523)
Q Consensus 29 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~ 108 (523)
-..+-+.|+++.|...++..++.. +.+..+|..+-..+.+.|++++|+..|++..+..
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------- 80 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE--------------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------- 80 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc--------------cccchhhhhhhhhhhhhhhHHHhhcccccccccc--------
Confidence 344567899999999999999875 2368899999999999999999999999877643
Q ss_pred CChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+..++..+-..|...|++++|.+.|++
T Consensus 81 ------------------p~~~~a~~~la~~y~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 81 ------------------PKDIAVHAALAVSHTNEHNANAALASLRA 109 (112)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------cccccchHHHHHHHHHCCCHHHHHHHHHH
Confidence 44678899999999999999999999987
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.41 E-value=0.011 Score=49.19 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=64.2
Q ss_pred HHHHhcCCchHHHHHHHHhhHc--c-----------------------------HHHHhhccCChHHHHHHHHHHHHhcC
Q 035847 78 GMYNVLGYYEEIVNLFYLLIDE--G-----------------------------VYKACSELKDHRVGKDVYDYMISIKF 126 (523)
Q Consensus 78 ~~~~~~g~~~~A~~l~~~m~~~--g-----------------------------ll~~~~~~~~~~~a~~~~~~m~~~g~ 126 (523)
......|++++|.+.|.+-... | +..++...|+.++|...++.+++..
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~- 97 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH- 97 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-
Confidence 4566778888888888775542 1 6677778899999999999998874
Q ss_pred CCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 127 EGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 127 ~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+-+...|..++.+|.+.|+.++|++.|++
T Consensus 98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~ 126 (179)
T d2ff4a2 98 PYREPLWTQLITAYYLSDRQSDALGAYRR 126 (179)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45788999999999999999999999998
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.0091 Score=46.22 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=61.4
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCCh---HHHHHHHhcC
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL---KVAHCKFSKI 210 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~---~~A~~vf~~m 210 (523)
..|++.+...++++.|.+.|++ .++. -+.+..++..+-.++.+.++. ++|..+|+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~------------------aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~ 62 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQS------------------EKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL 62 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------------HHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH------------------HHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3566677777777777777777 1222 133456666677777665544 4577777776
Q ss_pred CCCC--h---hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 211 KQKH--L---VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 211 ~~~~--~---~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
.+.+ . .+|..+-. +|.+.|++++|++.|+...+ +.|+..-..
T Consensus 63 l~~~~~~~~~~~~~~Lg~------------~y~~~g~~~~A~~~~~~aL~--~~P~~~~A~ 109 (122)
T d1nzna_ 63 LPKGSKEEQRDYVFYLAV------------GNYRLKEYEKALKYVRGLLQ--TEPQNNQAK 109 (122)
T ss_dssp TTTSCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HhccCCchHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHH--hCcCCHHHH
Confidence 5422 2 24555555 77778888888888888776 346544433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.007 Score=46.94 Aligned_cols=96 Identities=7% Similarity=-0.130 Sum_probs=64.5
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCH---HHHHHHhhhccccccCchhhHhhHhhhhhhc
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM---EMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 177 (523)
+++.+...++++.|++.|...++.+ +.+..++..+-.++.+.++. ++|..+|++ .-.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~-------------------~l~ 64 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE-------------------LLP 64 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHH-------------------HTT
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------HHh
Confidence 3444555556666666666666654 55678888888888876655 458888887 322
Q ss_pred CCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChh
Q 035847 178 DDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLV 216 (523)
Q Consensus 178 ~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~ 216 (523)
....|+ ..++..|-.+|.+.|+.++|.+.|+... .|+-.
T Consensus 65 ~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence 122233 3367778889999999999999998865 35443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.15 E-value=0.46 Score=43.18 Aligned_cols=247 Identities=11% Similarity=0.083 Sum_probs=150.6
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCC
Q 035847 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR 145 (523)
Q Consensus 67 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 145 (523)
.||..--..+..-|-+.|.++.|..+|..+..-+ ++..+.+.++++.|.+..... -+..+|.-+...+.+...
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE 84 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcH
Confidence 3454444556677779999999999999887666 888888888888887776543 355678888888887766
Q ss_pred HHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC---CCCChhhHHHHH
Q 035847 146 MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI---KQKHLVSWNAML 222 (523)
Q Consensus 146 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m---~~~~~~t~~~li 222 (523)
..-|..+ .. ....+......++..|-..|..++...+++.. ..++...++-++
T Consensus 85 ~~la~i~-~~-----------------------~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~ 140 (336)
T d1b89a_ 85 FRLAQMC-GL-----------------------HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 140 (336)
T ss_dssp HHHHHHT-TT-----------------------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHH-HH-----------------------HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHH
Confidence 6544221 11 23334445568999999999999999999854 245667789999
Q ss_pred HhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhH
Q 035847 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302 (523)
Q Consensus 223 ~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~ 302 (523)
. .|++.+ .++-++.++.. +-. +-..-++..|-+.+.+.++.-++..+-.. -++
T Consensus 141 ~------------lyak~~-~~kl~e~l~~~---s~~---y~~~k~~~~c~~~~l~~elv~Ly~~~~~~--------~~A 193 (336)
T d1b89a_ 141 I------------LYSKFK-PQKMREHLELF---WSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEY--------DNA 193 (336)
T ss_dssp H------------HHHTTC-HHHHHHHHHHH---STT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCH--------HHH
T ss_pred H------------HHHHhC-hHHHHHHHHhc---ccc---CCHHHHHHHHHHcCChHHHHHHHHhcCCH--------HHH
Confidence 9 666654 34444444332 112 22233556677777766666555443210 011
Q ss_pred HHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 303 li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+..++.-.++.......++.+.+..++ +...++.....+. .|+ ..+.|+......-+..+..+.+++-
T Consensus 194 ~~~~i~~~~~~~~~~~f~e~~~k~~N~--e~~~~~i~~yL~~---~p~--~i~~lL~~v~~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 194 IITMMNHPTDAWKEGQFKDIITKVANV--ELYYRAIQFYLEF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKV 261 (336)
T ss_dssp HHHHHHSTTTTCCHHHHHHHHHHCSST--HHHHHHHHHHHHH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHHcchhhhhHHHHHHHHHccCCh--HHHHHHHHHHHHc---CHH--HHHHHHHHhccCCCHHHHHHHHHhc
Confidence 111112244556667788888898888 7777776665543 353 4477777788888888888888775
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.0089 Score=46.66 Aligned_cols=97 Identities=9% Similarity=0.092 Sum_probs=71.5
Q ss_pred HHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 035847 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-- 212 (523)
Q Consensus 135 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-- 212 (523)
.+-+.|.+.|++++|...|+++ ++. .+.+..++..+-.+|.+.|++++|...++...+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~a------------------l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 68 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKA------------------KEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH------------------HHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 4556788999999999999981 222 234678899999999999999999999998653
Q ss_pred -CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 213 -KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 213 -~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
.+...|..+-.+|.+.|. .+...+++++|++.|+.-...
T Consensus 69 ~~~~~~~~~~a~~~~~lg~-----~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 69 RENREDYRQIAKAYARIGN-----SYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHSTTCHHHHHHHHHHHHH-----HHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH-----HHHHhCCHHHHHHHHHHHHhc
Confidence 233344444443433333 777889999999999887653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.056 Score=44.17 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=70.5
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcccc--ccCch--hhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 135 PVLDMFIKCGRMEMASGEFEEKDFS--NLSLL--KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 135 ~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~--~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
..-+.|.+.|++++|...|.++.-. ..... ........ .-..+|+-+-.+|.+.|++++|...++..
T Consensus 18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~---------~~~~~~~nla~~y~k~~~~~~A~~~~~~a 88 (170)
T d1p5qa1 18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQA---------LRLASHLNLAMCHLKLQAFSAAIESCNKA 88 (170)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhch---------hHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence 3446788899999999999883100 00000 00000000 01245667778888999999999988775
Q ss_pred C--CC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHH
Q 035847 211 K--QK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265 (523)
Q Consensus 211 ~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 265 (523)
. .| ++.+|.-+-. +|.+.|++++|+..|+...+ +.|+....
T Consensus 89 l~~~p~~~~a~~~~g~------------~~~~~g~~~~A~~~~~~al~--l~P~n~~~ 132 (170)
T d1p5qa1 89 LELDSNNEKGLSRRGE------------AHLAVNDFELARADFQKVLQ--LYPNNKAA 132 (170)
T ss_dssp HHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH--HCSSCHHH
T ss_pred hhccccchhhhHHHHH------------HHHHhhhHHHHHHHHHHHHH--hCCCCHHH
Confidence 4 34 6667777777 88889999999999999877 34644333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=95.04 E-value=0.047 Score=43.76 Aligned_cols=59 Identities=20% Similarity=0.099 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.+|+.+-.+|.+.|++++|...++...+ | ++.+|..+.. +|...|++++|+..|+...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~------------~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV------------ANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH------------HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHH------------HHHHcCCHHHHHHHHHHHHH
Confidence 3555666677777777777777765432 3 4456666666 66677777777777777665
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=95.02 E-value=0.88 Score=39.18 Aligned_cols=51 Identities=12% Similarity=-0.102 Sum_probs=29.7
Q ss_pred cCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc----cCChhHHHHHHHHHHHhcC
Q 035847 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ----VKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 240 ~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~i~~~~~~~g~ 293 (523)
..++++|+..|+.-.+.|- ...+..|-..+.+ ..+.+.|.+.++...+.|.
T Consensus 195 ~~d~~~A~~~~~~aa~~g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 195 TKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccchhhhhhhHhhhhcccC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 3567777777777766652 2233333333332 2366777777777777664
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=94.89 E-value=0.029 Score=49.80 Aligned_cols=119 Identities=8% Similarity=-0.032 Sum_probs=75.8
Q ss_pred cCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChH
Q 035847 33 PKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHR 112 (523)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~ 112 (523)
.+.|+++.|...+...++.. ..|...+..+...|+..|++++|+..|+...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~--------------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l------------- 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS--------------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL------------- 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred HHCCCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------
Confidence 35688999999999888864 347888999999999999999999999887663
Q ss_pred HHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHH
Q 035847 113 VGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM 191 (523)
Q Consensus 113 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li 191 (523)
.|+ ...+..+-..+...+..+++..-... ....+-.++...+....
T Consensus 60 --------------~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~-------------------~~~~~~p~~~~~~l~~a 106 (264)
T d1zbpa1 60 --------------FPEYLPGASQLRHLVKAAQARKDFAQGAAT-------------------AKVLGENEELTKSLVSF 106 (264)
T ss_dssp --------------CGGGHHHHHHHHHHHHHHHHHHHHTTSCCC-------------------EECCCSCHHHHHHHHHH
T ss_pred --------------CCCcHHHHHHHHHHHHhccccHHHHHHhhh-------------------hhcccCchHHHHHHHHH
Confidence 343 23333333333333333332222111 11102223344445556
Q ss_pred HHHHhcCChHHHHHHHhcCC
Q 035847 192 DFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 192 ~~~~k~g~~~~A~~vf~~m~ 211 (523)
..+.+.|+.++|...+++..
T Consensus 107 ~~~~~~gd~~~A~~~~~~a~ 126 (264)
T d1zbpa1 107 NLSMVSQDYEQVSELALQIE 126 (264)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHH
Confidence 77888899999999988764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.082 Score=43.10 Aligned_cols=82 Identities=10% Similarity=0.110 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHcc------------------------HHHHhhccCChHHHHHHHHHHHHhcCCC
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEG------------------------VYKACSELKDHRVGKDVYDYMISIKFEG 128 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~g------------------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p 128 (523)
+...=..+.+.|++++|+..|.+..... +..++.+.|+++.|.+.++..++.. +.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~ 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SN 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-cc
Confidence 3344457788899999999997765331 3444567888888888888888764 33
Q ss_pred CceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 129 NACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
++.+|..+-.+|...|++++|...|++
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~ 121 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQK 121 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 677788888888888888888888888
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=94.58 E-value=0.4 Score=37.90 Aligned_cols=65 Identities=9% Similarity=0.034 Sum_probs=46.3
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc-CHhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCC
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP-AMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSS 383 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 383 (523)
.+|+.+-.+|.+.|+. ++|++.++...+. .| +..+|..+..++...|++++|...+++. .+.|+.
T Consensus 68 ~~~~Nla~~~~~l~~~--~~Al~~~~~al~~---~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 134 (153)
T d2fbna1 68 SCNLNLATCYNKNKDY--PKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 134 (153)
T ss_dssp HHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHhhHHHHHHHhccc--chhhhhhhccccc---cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3566677777888888 8888888777654 34 4677778888888888888888887763 345543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.54 E-value=0.15 Score=41.37 Aligned_cols=81 Identities=7% Similarity=0.015 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhHcc-------------------------HHHHhhccCChHHHHHHHHHHHHhcCCC
Q 035847 74 TSMMGMYNVLGYYEEIVNLFYLLIDEG-------------------------VYKACSELKDHRVGKDVYDYMISIKFEG 128 (523)
Q Consensus 74 ~~li~~~~~~g~~~~A~~l~~~m~~~g-------------------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p 128 (523)
...-..+.+.|++++|+..|.+....- +-.++.+.|+++.|...+...++.. +.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~ 109 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PS 109 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hh
Confidence 334456678899999999887764311 2233444566666666666665542 23
Q ss_pred CceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 129 NACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
++.+|..+-.+|.+.|+++.|...|++
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~ 136 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALADLKK 136 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHHHHHH
Confidence 444555666666666666666666665
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=94.39 E-value=1.3 Score=37.94 Aligned_cols=187 Identities=11% Similarity=-0.016 Sum_probs=100.6
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc-------HHHHhhc----cCChHHHHHHHHHHHHhcCCCCceeHhHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------VYKACSE----LKDHRVGKDVYDYMISIKFEGNACVKRPVLD 138 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 138 (523)
...|..|=..+-+.+++++|++.|++-.+.| +-..+.. ..+...+...+....+.+ +......|..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 3455556566677899999999999887776 2222222 346666766666666554 2222333333
Q ss_pred HHHh----cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcC
Q 035847 139 MFIK----CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK----CRYLKVAHCKFSKI 210 (523)
Q Consensus 139 ~~~~----~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k----~g~~~~A~~vf~~m 210 (523)
.+.. ..+.+.|...++. ..+. |... ....+...+.. ......|...+...
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~------------------a~~~-g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~ 136 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSK------------------ACDL-KYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKA 136 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHH------------------HHHT-TCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhh------------------hhhh-hhhh---HHHhhcccccCCCcccchhHHHHHHhhhh
Confidence 3332 3455666666665 2222 3211 11122222222 23455555555543
Q ss_pred C-CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhh----ccCChhHHHHHH
Q 035847 211 K-QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA----QVKGFKLGKEIH 285 (523)
Q Consensus 211 ~-~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~----~~g~~~~a~~i~ 285 (523)
. ..+..++..|...|.. ......+...+...++...+.|. ......+-..+. ...+.+.|.+.+
T Consensus 137 ~~~~~~~~~~~L~~~~~~--------~~~~~~~~~~~~~~~~~a~~~g~---~~A~~~lg~~y~~g~~~~~d~~~A~~~~ 205 (265)
T d1ouva_ 137 CDLNDGDGCTILGSLYDA--------GRGTPKDLKKALASYDKACDLKD---SPGCFNAGNMYHHGEGATKNFKEALARY 205 (265)
T ss_dssp HHTTCHHHHHHHHHHHHH--------TSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred hcccccchhhhhhhhhcc--------CCCcccccccchhhhhccccccc---cccccchhhhcccCcccccchhhhhhhH
Confidence 3 3566677777663322 12234566677777777766552 333222222222 246788888888
Q ss_pred HHHHHhc
Q 035847 286 GYVLRHH 292 (523)
Q Consensus 286 ~~~~~~g 292 (523)
....+.|
T Consensus 206 ~~aa~~g 212 (265)
T d1ouva_ 206 SKACELE 212 (265)
T ss_dssp HHHHHTT
T ss_pred hhhhccc
Confidence 8888876
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.14 Score=39.32 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=68.6
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcC
Q 035847 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346 (523)
Q Consensus 267 ~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g 346 (523)
.+-..+.+.|++++|.+.|...++.. +.+...|..+-.+|.+.|++ ++|...++.+.+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-----------------p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~l-- 67 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-----------------PTNMTYITNQAAVYFEKGDY--NKCRELCEKAIEV-- 67 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----------------cccHHHHHhHHHHHHHcCch--HHHHHHHHHHHHh--
Confidence 34456778889999999998888742 23567889999999999999 9999999998753
Q ss_pred CccC--------HhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 347 MEPA--------MEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 347 ~~p~--------~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
.|+ ..+|..+-..+...+++++|.+.+++
T Consensus 68 -~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 68 -GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp -HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 222 24677777788888889999888876
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=94.29 E-value=0.12 Score=41.96 Aligned_cols=71 Identities=14% Similarity=-0.008 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN 261 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~ 261 (523)
.+|+-+-.+|.+.|++++|...++...+ .+..+|..+-. +|...|++++|.+.|.+..+ +.|+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~------------~~~~l~~~~~A~~~~~~al~--l~P~ 130 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGE------------AQLLMNEFESAKGDFEKVLE--VNPQ 130 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH--SCTT
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 3566677788999999999999887643 45667777777 88899999999999999887 4565
Q ss_pred HHHHHHHH
Q 035847 262 TISLSGVL 269 (523)
Q Consensus 262 ~~t~~~ll 269 (523)
.......+
T Consensus 131 n~~~~~~l 138 (168)
T d1kt1a1 131 NKAARLQI 138 (168)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 54443333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=93.76 E-value=0.24 Score=39.99 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhh
Q 035847 72 SWTSMMGMYNVLGYYEEIVNLFYLLI 97 (523)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~l~~~m~ 97 (523)
.+.-.-..+.+.|++.+|+..|.+..
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al 42 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIV 42 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444567788899999999997744
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.74 E-value=0.15 Score=41.36 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=49.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCC
Q 035847 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~ 259 (523)
+...|+.+-.+|.+.|++++|...++...+ .+...|..+-. +|.+.|++++|++.|+...+. .
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~------------~~~~l~~~~~A~~~~~~al~l--~ 141 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ------------GWQGLKEYDQALADLKKAQEI--A 141 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHH--C
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHH------------HHHHccCHHHHHHHHHHHHHh--C
Confidence 355677777888888999999888887643 35557777777 888888999999998888773 4
Q ss_pred CCH
Q 035847 260 PNT 262 (523)
Q Consensus 260 p~~ 262 (523)
|+.
T Consensus 142 p~n 144 (169)
T d1ihga1 142 PED 144 (169)
T ss_dssp TTC
T ss_pred CCC
Confidence 543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.67 E-value=0.88 Score=34.24 Aligned_cols=60 Identities=8% Similarity=0.021 Sum_probs=51.0
Q ss_pred cchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 234 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
+....+.|+-+.-.++++++.+ +-+|++.....+-.||.+.|...++.+++.+.-+.|+.
T Consensus 93 Ld~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 93 LDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3378889999999999999777 45788888888999999999999999999999998875
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=93.51 E-value=0.16 Score=40.49 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=65.6
Q ss_pred eHhHH--HHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC---chhHHHHHHHHHHhcCChHHHHHH
Q 035847 132 VKRPV--LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES---DLLVNNSLMDFYAKCRYLKVAHCK 206 (523)
Q Consensus 132 ~~~~l--i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---d~~~~~~li~~~~k~g~~~~A~~v 206 (523)
+|..+ ...+.+.|++++|...|+++ .++............ ....|+.+-.+|.+.|++++|..-
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~A-----------l~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~ 77 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRA-----------MEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHS 77 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH-----------HHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHh
Confidence 44444 55677889999999999982 111111110000111 246788899999999999999887
Q ss_pred HhcCC-------C--CCh-----hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 207 FSKIK-------Q--KHL-----VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 207 f~~m~-------~--~~~-----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
+++.. + ++. ..|+.+-. .|.+.|++++|++.|++..+
T Consensus 78 ~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~------------~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 78 ADKALHYFNRRGELNQDEGKLWISAVYSRAL------------ALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHCCTTSTHHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccccccccchhHHHHhhhHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 77643 1 111 13444555 88889999999999988654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=93.33 E-value=0.2 Score=39.87 Aligned_cols=68 Identities=7% Similarity=-0.084 Sum_probs=47.7
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC--C-chhHHHHHHHHHHhcCChHHHHHHH
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE--S-DLLVNNSLMDFYAKCRYLKVAHCKF 207 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~-d~~~~~~li~~~~k~g~~~~A~~vf 207 (523)
..|+.+-.+|.+.|++++|..-+++ +..+....... ... | ...+++.+-.+|.+.|+.++|...|
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~-----------al~~~~~~~~~-~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~ 123 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADK-----------ALHYFNRRGEL-NQDEGKLWISAVYSRALALDGLGRGAEAMPEF 123 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHHCCT-TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhh-----------hhhcccccccc-cccccchhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999999888 22222221111 111 1 1335677889999999999999998
Q ss_pred hcC
Q 035847 208 SKI 210 (523)
Q Consensus 208 ~~m 210 (523)
+..
T Consensus 124 ~~A 126 (156)
T d2hr2a1 124 KKV 126 (156)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=92.92 E-value=0.027 Score=49.96 Aligned_cols=119 Identities=7% Similarity=-0.042 Sum_probs=73.1
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh-hh
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL-VS 217 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~-~t 217 (523)
.+.|++++|...+++ .++. -+.|...+..+...|+..|++++|...|+...+ |+. ..
T Consensus 7 L~~G~l~eAl~~l~~------------------al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~ 66 (264)
T d1zbpa1 7 LSEGQLQQALELLIE------------------AIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66 (264)
T ss_dssp TTTTCHHHHHHHHHH------------------HHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHCCCHHHHHHHHHH------------------HHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 456888888888888 2333 344678999999999999999999999998764 433 34
Q ss_pred HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 218 ~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
+..+-. .+...+..+++..-+..-...+-.++...+......+...|+.++|.+.+..+.+.
T Consensus 67 ~~~l~~------------ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 67 ASQLRH------------LVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHH------------HHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHH------------HHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 443333 22112222221111110000111122344444556677889999999999988774
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.54 E-value=0.091 Score=41.57 Aligned_cols=124 Identities=14% Similarity=0.089 Sum_probs=75.4
Q ss_pred HHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhc----------CChHHHHHHHh
Q 035847 140 FIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKC----------RYLKVAHCKFS 208 (523)
Q Consensus 140 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~----------g~~~~A~~vf~ 208 (523)
|-+.+.+++|...|+. +++. .| +..++..+-.+|.+. +.+++|...|+
T Consensus 7 ~~r~~~fe~A~~~~e~------------------al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~ 65 (145)
T d1zu2a1 7 FDRILLFEQIRQDAEN------------------TYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFE 65 (145)
T ss_dssp HHHHHHHHHHHHHHHH------------------HHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHH------------------HHhh---CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 3445567777777777 2433 34 455666666666543 44577888887
Q ss_pred cCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHH
Q 035847 209 KIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 209 ~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~ 285 (523)
...+ | +..+|+.+-.+|...|+...- .....+.+++|.+.|+...+ +.|+..+|..-|.-+ ..+.+++
T Consensus 66 kAl~l~P~~~~a~~~lG~~y~~~g~~~~~-~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~ 136 (145)
T d1zu2a1 66 EALLIDPKKDEAVWCIGNAYTSFAFLTPD-ETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLH 136 (145)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHH
T ss_pred HHHHhcchhhHHHhhHHHHHHHcccchhh-HHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHH
Confidence 7642 4 556888887744322211100 00112346788888888876 578888777666554 5667788
Q ss_pred HHHHHhcC
Q 035847 286 GYVLRHHI 293 (523)
Q Consensus 286 ~~~~~~g~ 293 (523)
.+..+.|+
T Consensus 137 ~e~~k~~~ 144 (145)
T d1zu2a1 137 AEAYKQGL 144 (145)
T ss_dssp HHHHHSSS
T ss_pred HHHHHHhc
Confidence 87777664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.51 E-value=0.29 Score=38.47 Aligned_cols=122 Identities=7% Similarity=-0.011 Sum_probs=71.2
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chh
Q 035847 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLL 185 (523)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~ 185 (523)
+.+.+++|.+.++..++.. +.+..++..+-.+|...+++..+..-.+. ++.+...+..+++. .| +..
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~--------~~~Ai~~~~kAl~l---~P~~~~ 76 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQM--------IQEAITKFEEALLI---DPKKDE 76 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHH--------HHHHHHHHHHHHHH---CTTCHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHH--------HHHHHHHHHHHHHh---cchhhH
Confidence 3445666777777776653 44666777777777765444322222111 22233333334544 34 466
Q ss_pred HHHHHHHHHHhcCC-----------hHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 186 VNNSLMDFYAKCRY-----------LKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 186 ~~~~li~~~~k~g~-----------~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
.|+.+-.+|...|+ ++.|.+.|+... +|+...|..-+. . ..+|.+++.+
T Consensus 77 a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~------------~------~~ka~~~~~e 138 (145)
T d1zu2a1 77 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE------------M------TAKAPQLHAE 138 (145)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH------------H------HHTHHHHHHH
T ss_pred HHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHH------------H------HHHHHHHHHH
Confidence 78778777776543 467777777654 476665555444 2 3567788888
Q ss_pred HHhcCC
Q 035847 253 MIQTDM 258 (523)
Q Consensus 253 M~~~g~ 258 (523)
..+.|+
T Consensus 139 ~~k~~~ 144 (145)
T d1zu2a1 139 AYKQGL 144 (145)
T ss_dssp HHHSSS
T ss_pred HHHHhc
Confidence 777664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.03 E-value=1.6 Score=41.72 Aligned_cols=110 Identities=7% Similarity=-0.142 Sum_probs=62.1
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (523)
++...|+.+-..+.+.|+.++|...+..-.... +-..+...+++++|.+.+.+..+.. +-+...|+.|-..|
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILA 196 (497)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 456677777778888888888877665433222 5566778899999999999998873 33557999999999
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcC
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g 198 (523)
...|+..+|...|.++ +.. -.|-...++.|...+.+..
T Consensus 197 ~~~~~~~~A~~~y~ra------------------l~~--~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRS------------------IAV--KFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHTTCHHHHHHHHHHH------------------HSS--SBCCHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHH------------------HhC--CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999982 111 2355667777777666544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.06 E-value=0.77 Score=44.22 Aligned_cols=133 Identities=8% Similarity=-0.114 Sum_probs=69.4
Q ss_pred cCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 035847 197 CRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273 (523)
Q Consensus 197 ~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 273 (523)
.+.++.|...+...-+ ++...|+.+-. .+.+.|+.++|...+..-.+.. | ..++..+-..+.
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~------------~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~ 163 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGI------------ISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIAR 163 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------------------CCHHHHHH--H-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHH------------HHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHH
Confidence 3455566555554322 33445555555 6667777777777666544311 1 245666777777
Q ss_pred ccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhH
Q 035847 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353 (523)
Q Consensus 274 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~t 353 (523)
..+++++|...+....+.. +.+..+||.|-..|...|+. .+|...|.+-... -.|-..+
T Consensus 164 ~~~~~~~A~~~y~~A~~l~-----------------P~~~~~~~~Lg~~~~~~~~~--~~A~~~y~ral~~--~~~~~~a 222 (497)
T d1ya0a1 164 YRNQTSQAESYYRHAAQLV-----------------PSNGQPYNQLAILASSKGDH--LTTIFYYCRSIAV--KFPFPAA 222 (497)
T ss_dssp HTTCHHHHHHHHHHHHHHC-----------------TTBSHHHHHHHHHHHHTTCH--HHHHHHHHHHHSS--SBCCHHH
T ss_pred HcccHHHHHHHHHHHHHHC-----------------CCchHHHHHHHHHHHHcCCH--HHHHHHHHHHHhC--CCCCHHH
Confidence 7888888888888877632 22446788888888888888 8888888776642 3556777
Q ss_pred HHHHHHHHHhhC
Q 035847 354 YCCMVDLLARAG 365 (523)
Q Consensus 354 y~~li~~~~~~g 365 (523)
+..|...+.+..
T Consensus 223 ~~nL~~~~~~~~ 234 (497)
T d1ya0a1 223 STNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 777777776543
|