Citrus Sinensis ID: 035953

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFVYGNYSTRSLPHALYVLPHNTQLSLSPPLNPAAVGHSRSPPFKSKIYGCIIA
Secondary Structure (PSIPRED)
ccEEEEEcccccccHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEHHcccccccEEEEEcccEEEEEcccccccccccccccccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEccccccEEEHHHHHHccccccccEEEEEcccEEEEcccHHHHccccccccEEEEEccccccccEEEEEEEc
Coil and Loop (DISEMBL)
mlsktiiasdkYKCLVEIIIIAAMLSIGNSIFYRLkdkqihadnarmnfhlgdvgdHITLLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNcnlndldaikFSKLYAKDFfvygnystrslphalyvlphntqlslspplnpaavghsrsppfkskiygciia
Flexible Loop (DISEMBL)
mlsktiiasdkyKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFVYGNYSTRSLPHALYVLPHNTQLSLSPPLNPAavghsrsppfkskiygciia
Low Complexity Region (SEG)
MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFVYGNYSTRSLPHALYVLPHNTQLSLSPPLNPAAVGHSRSPPFKSKIYGCIIA
Disordered region (IsUnstruct)
*****IIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFVYGNYSTRSLPHALYVLPHNT************************IYGCI**
Disordered Region (DISOPRED)
MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYR**************FHLGDVGDHITLLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFVYGNYSTRSLPHALYVLPHNTQLSLSPPLNPAAVGHSRSPPFKSKIYGCIIA
Disordered Region (DISEMBL)
MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFVYGNYSTRSLPHALYVLPHNTQLSLSPPLNPAAVGHSRSPPFKSKIYGCIIA
Disordered Region (DISPRO)
MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFVYGNYSTRSLPHALYVLPHNTQLSLSPPLNPAAVGHSRSPPFKSKIYGCIIA
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFVYGNYSTRSLPHALYVLPHNTQLSLSPPLNPAAVGHSRSPPFKSKIYGCIIA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q767K6	1045	Putative pre-mRNA-splicin	yes	no	0.726	0.116	0.485	5e-29
Q7YR39	1044	Putative pre-mRNA-splicin	yes	no	0.726	0.116	0.485	5e-29
O60231	1041	Putative pre-mRNA-splicin	yes	no	0.726	0.117	0.485	5e-29
O45244	1008	Probable pre-mRNA-splicin	yes	no	0.821	0.136	0.425	1e-26
Q54MH3	1106	Putative pre-mRNA-splicin	yes	no	0.803	0.122	0.459	1e-22
Q10752	1055	Pre-mRNA-splicing factor	yes	no	0.625	0.099	0.475	7e-21
Q09530	1200	Probable pre-mRNA-splicin	no	no	0.517	0.072	0.470	9e-17
A2A4P0	1244	ATP-dependent RNA helicas	no	no	0.660	0.089	0.369	5e-15
Q14562	1220	ATP-dependent RNA helicas	no	no	0.660	0.090	0.369	6e-15
Q38953	1168	Probable pre-mRNA-splicin	no	no	0.821	0.118	0.314	4e-14

>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Sus scrofa GN=DHX16 PE=3 SV=1

 Score =  127 bits (318), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 16/138 (11%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           MLSK I+AS+KY C  EI+ +AAMLS+ NSIFYR KDK +HADNAR+NF L   GDH+ L
Sbjct: 827 MLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG-GDHLVL 885

Query: 61  L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
           L             +WC EN++Q +SM+RARD+++QLEGLL RVE+ ++    D   I+ 
Sbjct: 886 LNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY--IRV 943

Query: 108 SKLYAKDFFVYGNYSTRS 125
            K     +F +    TRS
Sbjct: 944 RKAITAGYFYHTARLTRS 961

Probable ATP-binding RNA helicase involved in pre-mRNA splicing.
Sus scrofa (taxid: 9823)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1

 Score =  127 bits (318), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 16/138 (11%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           MLSK I+AS+KY C  EI+ +AAMLS+ NSIFYR KDK +HADNAR+NF L   GDH+ L
Sbjct: 826 MLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG-GDHLVL 884

Query: 61  L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
           L             +WC EN++Q +SM+RARD+++QLEGLL RVE+ ++    D   I+ 
Sbjct: 885 LNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY--IRV 942

Query: 108 SKLYAKDFFVYGNYSTRS 125
            K     +F +    TRS
Sbjct: 943 RKAITAGYFYHTARLTRS 960

Probable ATP-binding RNA helicase involved in pre-mRNA splicing.

Pan troglodytes (taxid: 9598)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2

 Score =  127 bits (318), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 16/138 (11%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           MLSK I+AS+KY C  EI+ +AAMLS+ NSIFYR KDK +HADNAR+NF L   GDH+ L
Sbjct: 823 MLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG-GDHLVL 881

Query: 61  L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
           L             +WC EN++Q +SM+RARD+++QLEGLL RVE+ ++    D   I+ 
Sbjct: 882 LNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY--IRV 939

Query: 108 SKLYAKDFFVYGNYSTRS 125
            K     +F +    TRS
Sbjct: 940 RKAITAGYFYHTARLTRS 957

Probable ATP-binding RNA helicase involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=1 SV=2

 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 90/162 (55%), Gaps = 24/162 (14%)

Query: 2   LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
           +SK IIAS+KY+C  EI+ IAAMLS   ++FYR K + IHAD+AR  F     GDHITL+
Sbjct: 790 MSKMIIASEKYECSEEIVTIAAMLSCNAAVFYRPKAQVIHADSARKGF-WSPAGDHITLM 848

Query: 62  -------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFS 108
                        RWC ENY+Q ++MKRARD++DQL GLL RVEIE   +    D IK  
Sbjct: 849 NVYNKWQESSFSQRWCVENYVQHRTMKRARDVRDQLVGLLERVEIETKSS---TDTIKIR 905

Query: 109 KLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLSLSP 143
           K     +F         G+Y T    H  +  P++     +P
Sbjct: 906 KAITAGYFYNVSKLDNTGHYKTVKHKHTTHPHPNSCLFEETP 947

Probable ATP-binding RNA helicase involved in pre-mRNA splicing.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 96/159 (60%), Gaps = 24/159 (15%)

Query: 1    MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNAR-MNFHLGDVGDHIT 59
             LSK IIAS+KYKC  EI+ I AMLS+GN+IFYR KDK   AD AR + FH    GDH+T
Sbjct: 890  QLSKMIIASEKYKCSEEILTICAMLSVGNTIFYRPKDKAFAADAARKLFFH--PQGDHLT 947

Query: 60   LL-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIK 106
            L+             +WC EN+IQ +SMKRA+D++DQLE LL RVEI +  N++D D+I+
Sbjct: 948  LMNVFNQWRESGYAVQWCFENFIQHRSMKRAQDVRDQLELLLERVEIPLVSNVDDTDSIR 1007

Query: 107  FSKLYAKDFFVYGNYSTRSLPHA--LYVLPHNTQLSLSP 143
              K  A  FF    Y++  L  +       HN  + + P
Sbjct: 1008 --KCIASGFF----YNSAKLEKSGLFRTTKHNQSVQIHP 1040

Probable ATP-binding RNA helicase involved in pre-mRNA splicing.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q10752|CDC28_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc28 PE=3 SV=2

 Score = 99.8 bits (247), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 15/120 (12%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           MLSK++IAS KY C+ E++ I +ML   +S+FYR KDK + AD AR NF     GDH+TL
Sbjct: 842 MLSKSLIASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQPG-GDHLTL 900

Query: 61  L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLND-LDAIK 106
           L              W  EN++Q KS+ RARD++DQL  L  RVEIE+  N ++ LD IK
Sbjct: 901 LHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRDQLANLCERVEIELVTNSSESLDPIK 960

Involved in pre-mRNA splicing. Is required together with ATP and at least one other factor, for the first cleavage-ligation reaction. Functions as a molecular motor in the activation of the precatalytic spliceosome for the first transesterification reaction of pre-mRNA splicing by hydrolyzing ATP to cause the activation of the spliceosome without the occurrence of splicing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 15/102 (14%)

Query: 2    LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
            LSK +I S    C  E++ I AML++ N IFYR K+KQ HAD  +  FH  + GDH+TLL
Sbjct: 964  LSKLLIMSVDLGCSEEVLTIVAMLNVQN-IFYRPKEKQDHADQKKAKFHQPE-GDHLTLL 1021

Query: 62   R-------------WCCENYIQVKSMKRARDIQDQLEGLLTR 90
                          WC EN+IQV+SMKRA+DI+ QL G++ R
Sbjct: 1022 AVYNSWKNHHFSQPWCFENFIQVRSMKRAQDIRKQLLGIMDR 1063

Could act late in the splicing of pre-mRNA and mediate the release of the spliced mRNA from spliceosomes.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 19/130 (14%)

Query: 1    MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
            ML K +I S    C  E++ I +MLS+ N +FYR KDKQ  AD  +  FH  + GDH+TL
Sbjct: 1012 MLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VFYRPKDKQALADQKKAKFHQTE-GDHLTL 1069

Query: 61   LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIE-VNCNLNDLDAIK 106
            L              WC EN+IQ +S++RA+DI+ Q+ G++ R +++ V+C  +    ++
Sbjct: 1070 LAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKS---TVR 1126

Query: 107  FSKLYAKDFF 116
              K     FF
Sbjct: 1127 VQKAICSGFF 1136

Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 19/130 (14%)

Query: 1    MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
            ML K +I S    C  E++ I +MLS+ N +FYR KDKQ  AD  +  FH  + GDH+TL
Sbjct: 988  MLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VFYRPKDKQALADQKKAKFHQTE-GDHLTL 1045

Query: 61   LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIE-VNCNLNDLDAIK 106
            L              WC EN+IQ +S++RA+DI+ Q+ G++ R +++ V+C  +    ++
Sbjct: 1046 LAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKS---TVR 1102

Query: 107  FSKLYAKDFF 116
              K     FF
Sbjct: 1103 VQKAICSGFF 1112

Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 24/162 (14%)

Query: 2    LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
            LSK ++AS    C  EI+ + AM+  GN IFYR ++KQ  AD  R  F   + GDH+TLL
Sbjct: 939  LSKMLLASVDLGCSDEILTMIAMIQTGN-IFYRPREKQAQADQKRAKFFQPE-GDHLTLL 996

Query: 62   R-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFS 108
                          WC EN+IQ +S++RA+D++ QL  ++ + +++V     +   I+  
Sbjct: 997  AVYEAWKAKNFSGPWCFENFIQSRSLRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIR-- 1054

Query: 109  KLYAKDFFVYG-------NYSTRSLPHALYVLPHNTQLSLSP 143
            K     FF +G        Y T      +Y+ P +      P
Sbjct: 1055 KAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQP 1096

Could act late in the splicing of pre-mRNA and mediate the release of the spliced mRNA from spliceosomes.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
449477532	1049	PREDICTED: LOW QUALITY PROTEIN: putative	0.785	0.125	0.597	2e-42
449440832	1055	PREDICTED: putative pre-mRNA-splicing fa	0.785	0.125	0.597	2e-42
334182986	1034	pre-mRNA-splicing factor ATP-dependent R	0.839	0.136	0.567	6e-42
22329903	1044	pre-mRNA-splicing factor ATP-dependent R	0.839	0.135	0.567	6e-42
225457283	1056	PREDICTED: putative pre-mRNA-splicing fa	0.785	0.125	0.590	7e-42
357112047	1051	PREDICTED: putative pre-mRNA-splicing fa	0.839	0.134	0.576	9e-42
8920625	1090	Strong similarity to an unknown pre-mRNA	0.839	0.129	0.567	1e-41
242056951	1046	hypothetical protein SORBIDRAFT_03g01054	0.839	0.134	0.552	3e-41
218200972	1046	hypothetical protein OsI_28838 [Oryza sa	0.791	0.127	0.588	5e-41
326489737	1046	predicted protein [Hordeum vulgare subsp	0.839	0.134	0.558	6e-41

>gi|449477532|ref|XP_004155050.1| PREDICTED: LOW QUALITY PROTEIN: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like, partial [Cucumis sativus]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 108/154 (70%), Gaps = 22/154 (14%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           MLSK ++AS+K+KC  EII IAAMLSIGNSIFYR KDKQ+HADNARMNFH G+VGDHI L
Sbjct: 826 MLSKMMVASEKFKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIAL 885

Query: 61  LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
           L+             WC ENYIQV+SMKRARDI+DQLEGLL RVEIE+  NLNDLDAIK 
Sbjct: 886 LKVYNSWRETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLNDLDAIK- 944

Query: 108 SKLYAKDFFVY-------GNYSTRSLPHALYVLP 134
            K     +F +       G+Y T   P  +++ P
Sbjct: 945 -KTIISGYFPHSAKLQKNGSYRTVKHPQTVHIHP 977

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440832|ref|XP_004138188.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like [Cucumis sativus]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 108/154 (70%), Gaps = 22/154 (14%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           MLSK ++AS+K+KC  EII IAAMLSIGNSIFYR KDKQ+HADNARMNFH G+VGDHI L
Sbjct: 832 MLSKMMVASEKFKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIAL 891

Query: 61  LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
           L+             WC ENYIQV+SMKRARDI+DQLEGLL RVEIE+  NLNDLDAIK 
Sbjct: 892 LKVYNSWRETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLNDLDAIK- 950

Query: 108 SKLYAKDFFVY-------GNYSTRSLPHALYVLP 134
            K     +F +       G+Y T   P  +++ P
Sbjct: 951 -KTIISGYFPHSAKLQKNGSYRTVKHPQTVHIHP 983

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182986|ref|NP_001185127.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana] gi|332193372|gb|AEE31493.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana]

 Score =  175 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 93/164 (56%), Positives = 112/164 (68%), Gaps = 23/164 (14%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           MLSK I+ SDKYKC  EII IAAMLSIG SIFYR KDKQ+HADNARMNFH G+VGDHI L
Sbjct: 817 MLSKMIVVSDKYKCSDEIISIAAMLSIGGSIFYRPKDKQVHADNARMNFHTGNVGDHIAL 876

Query: 61  LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
           L+             WC ENYIQV+SMKRARDI+DQLEGLL RVEI+++ NLN+LD+++ 
Sbjct: 877 LKVYSSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIDISSNLNELDSVR- 935

Query: 108 SKLYAKDFFVY-------GNYSTRSLPHALYVLPHNTQLSLSPP 144
            K     FF +       G+Y T   P  +++ P N+ LS   P
Sbjct: 936 -KSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHP-NSGLSQVLP 977

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329903|ref|NP_174527.2| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana] gi|18377729|gb|AAL67014.1| putative RNA helicase [Arabidopsis thaliana] gi|22136924|gb|AAM91806.1| putative RNA helicase [Arabidopsis thaliana] gi|332193371|gb|AEE31492.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana]

 Score =  175 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 93/164 (56%), Positives = 112/164 (68%), Gaps = 23/164 (14%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           MLSK I+ SDKYKC  EII IAAMLSIG SIFYR KDKQ+HADNARMNFH G+VGDHI L
Sbjct: 827 MLSKMIVVSDKYKCSDEIISIAAMLSIGGSIFYRPKDKQVHADNARMNFHTGNVGDHIAL 886

Query: 61  LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
           L+             WC ENYIQV+SMKRARDI+DQLEGLL RVEI+++ NLN+LD+++ 
Sbjct: 887 LKVYSSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIDISSNLNELDSVR- 945

Query: 108 SKLYAKDFFVY-------GNYSTRSLPHALYVLPHNTQLSLSPP 144
            K     FF +       G+Y T   P  +++ P N+ LS   P
Sbjct: 946 -KSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHP-NSGLSQVLP 987

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457283|ref|XP_002284415.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like [Vitis vinifera]

 Score =  175 bits (443), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 91/154 (59%), Positives = 106/154 (68%), Gaps = 22/154 (14%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           MLSK I+A+D YKC  EII IAAMLS+GNSIFYR KDKQ+HADNARMNFH G+VGDHI L
Sbjct: 838 MLSKMIVAADNYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIAL 897

Query: 61  LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
           L+             WC ENYIQV+SMKRARD++DQLEGLL RVEIE+  N NDLDAIK 
Sbjct: 898 LKVYSSWKETNYSTQWCYENYIQVRSMKRARDVRDQLEGLLERVEIELASNPNDLDAIK- 956

Query: 108 SKLYAKDFFVY-------GNYSTRSLPHALYVLP 134
            K     FF +       G+Y T   P  +++ P
Sbjct: 957 -KSITAGFFPHSARLQKNGSYRTVKHPQTVHIHP 989

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357112047|ref|XP_003557821.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like [Brachypodium distachyon]

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 94/163 (57%), Positives = 110/163 (67%), Gaps = 22/163 (13%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           MLSK I+AS+KYKC  E+I IA+MLSIGNSIFYR KDKQ+HADNAR+NFH G+VGDHI L
Sbjct: 834 MLSKMIVASEKYKCSDEVISIASMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIAL 893

Query: 61  L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
           L             +WC ENYIQV+SMKRARDI+DQLEGLL RVEIEV  N +DLDAIK 
Sbjct: 894 LNVYNSWKETDFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVCSNASDLDAIK- 952

Query: 108 SKLYAKDFFVY-------GNYSTRSLPHALYVLPHNTQLSLSP 143
            K     FF +       G+Y T   P  ++V P +    L P
Sbjct: 953 -KAITSGFFHHSARLQKNGSYRTVKNPQTVFVHPSSGLAQLLP 994

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8920625|gb|AAF81347.1|AC007767_27 Strong similarity to an unknown pre-mRNA splicing factor RNA helicase At2g35340 gi|3608155 from Arabidopsis thaliana BAC T32F12 gb|AC005314. ESTs gb|AV566249 and gb|AI998735 come from this gene [Arabidopsis thaliana]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 112/164 (68%), Gaps = 23/164 (14%)

Query: 1    MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
            MLSK I+ SDKYKC  EII IAAMLSIG SIFYR KDKQ+HADNARMNFH G+VGDHI L
Sbjct: 859  MLSKMIVVSDKYKCSDEIISIAAMLSIGGSIFYRPKDKQVHADNARMNFHTGNVGDHIAL 918

Query: 61   LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
            L+             WC ENYIQV+SMKRARDI+DQLEGLL RVEI+++ NLN+LD+++ 
Sbjct: 919  LKVYSSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIDISSNLNELDSVR- 977

Query: 108  SKLYAKDFFVY-------GNYSTRSLPHALYVLPHNTQLSLSPP 144
             K     FF +       G+Y T   P  +++ P N+ LS   P
Sbjct: 978  -KSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHP-NSGLSQVLP 1019

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242056951|ref|XP_002457621.1| hypothetical protein SORBIDRAFT_03g010540 [Sorghum bicolor] gi|241929596|gb|EES02741.1| hypothetical protein SORBIDRAFT_03g010540 [Sorghum bicolor]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/163 (55%), Positives = 110/163 (67%), Gaps = 22/163 (13%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           MLSK I+AS+KYKC  EII +A+MLSIGNSIFYR KDKQ+HADNAR+NFH G+VGDHI L
Sbjct: 829 MLSKMIVASEKYKCSDEIISVASMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIAL 888

Query: 61  L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
           L             +WC ENYIQV+SMKRARDI+DQLEGL+ RVEIE+  N +DLDAIK 
Sbjct: 889 LNVYNSWKETDYSTQWCYENYIQVRSMKRARDIRDQLEGLMERVEIEICSNASDLDAIK- 947

Query: 108 SKLYAKDFFVY-------GNYSTRSLPHALYVLPHNTQLSLSP 143
            K+    FF +       G Y T   P  +++ P +    + P
Sbjct: 948 -KVITSGFFHHSARLQRDGTYKTVKNPQTVHIHPSSGLAEIRP 989

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218200972|gb|EEC83399.1| hypothetical protein OsI_28838 [Oryza sativa Indica Group] gi|222640378|gb|EEE68510.1| hypothetical protein OsJ_26936 [Oryza sativa Japonica Group]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 90/153 (58%), Positives = 108/153 (70%), Gaps = 20/153 (13%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           MLSK I+AS+KYKC  E+I IA+MLS+GNSIFYR KDKQ+HADNAR+NFH G+VGDHI L
Sbjct: 840 MLSKMIVASEKYKCSDEVISIASMLSVGNSIFYRPKDKQVHADNARLNFHTGNVGDHIAL 899

Query: 61  L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
           L             +WC ENYIQV+SMKRARDI+DQLEGLL RVEIE++ N +DLDAIK 
Sbjct: 900 LNVYNSWKETDYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEISSNASDLDAIK- 958

Query: 108 SKLYAKDFF-----VYGNYSTRSLPHALYVLPH 135
            K     FF     +  N S R++ +   VLP 
Sbjct: 959 -KAITSGFFHHSSRLQKNGSYRTVKNPQTVLPR 990

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326489737|dbj|BAK01849.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 91/163 (55%), Positives = 110/163 (67%), Gaps = 22/163 (13%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           MLSK I+AS+KYKC  E++ IA+MLSIGNSIFYR KDKQ+HADNAR+NFH G+VGDHI L
Sbjct: 829 MLSKMIVASEKYKCSDEVMSIASMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIAL 888

Query: 61  L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
           L             +WC ENYIQV+SMKRARDI+DQLEGL+ RVEIEV  N +DLDAIK 
Sbjct: 889 LNVYNSWRETDFSTQWCYENYIQVRSMKRARDIRDQLEGLMERVEIEVCSNASDLDAIK- 947

Query: 108 SKLYAKDFFVY-------GNYSTRSLPHALYVLPHNTQLSLSP 143
            K     FF +       G+Y T   P  +++ P +    L P
Sbjct: 948 -KAITSGFFHHSARLQKNGSYRTVKNPQTVFIHPSSGLAQLLP 989

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2033723	1044	ESP3 "ENHANCED SILENCING PHENO	0.791	0.127	0.588	5.8e-36
TAIR|locus:2062492	1044	MEE29 "maternal effect embryo	0.791	0.127	0.575	6.3e-34
ZFIN|ZDB-GENE-030131-8589	1054	dhx16 "DEAH (Asp-Glu-Ala-His)	0.833	0.132	0.456	3.9e-28
UNIPROTKB|Q5JP46	560	DHX16 "Putative pre-mRNA-splic	0.726	0.217	0.485	7e-26
UNIPROTKB|Q5SQH5	560	DHX16 "Putative pre-mRNA-splic	0.726	0.217	0.485	7e-26
UNIPROTKB|O60231	1041	DHX16 "Putative pre-mRNA-splic	0.726	0.117	0.485	2.9e-25
UNIPROTKB|F1PGL2	1042	DHX16 "Uncharacterized protein	0.726	0.117	0.485	2.9e-25
UNIPROTKB|E1BF68	1045	DHX16 "Uncharacterized protein	0.726	0.116	0.485	2.9e-25
UNIPROTKB|F1RU83	1045	DHX16 "Putative pre-mRNA-splic	0.726	0.116	0.485	2.9e-25
UNIPROTKB|Q767K6	1045	DHX16 "Putative pre-mRNA-splic	0.726	0.116	0.485	2.9e-25

TAIR|locus:2033723 ESP3 "ENHANCED SILENCING PHENOTYPE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 5.8e-36, P = 5.8e-36
 Identities = 90/153 (58%), Positives = 106/153 (69%)

Query:     1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
             MLSK I+ SDKYKC  EII IAAMLSIG SIFYR KDKQ+HADNARMNFH G+VGDHI L
Sbjct:   827 MLSKMIVVSDKYKCSDEIISIAAMLSIGGSIFYRPKDKQVHADNARMNFHTGNVGDHIAL 886

Query:    61 LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
             L+             WC ENYIQV+SMKRARDI+DQLEGLL RVEI+++ NLN+LD+++ 
Sbjct:   887 LKVYSSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIDISSNLNELDSVR- 945

Query:   108 SKLYAKDFFVYG-----NYSTRSLPHALYVLPH 135
              K     FF +      N S R++ H   V  H
Sbjct:   946 -KSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIH 977

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0035194 "posttranscriptional gene silencing by RNA" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

TAIR|locus:2062492 MEE29 "maternal effect embryo arrest 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 6.3e-34, P = 6.3e-34
 Identities = 88/153 (57%), Positives = 103/153 (67%)

Query:     1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
             MLSK I+ SDKYKC  EII IAAMLSIG SIFYR KDKQ+HADNA  NFH+G+VGDHI  
Sbjct:   827 MLSKMIVVSDKYKCSDEIISIAAMLSIGPSIFYRPKDKQVHADNAMKNFHVGNVGDHIAF 886

Query:    61 LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
             L+             WC ENYIQV+SMKRARDI+DQLEGLL RVEI+V+ N N+LD+I+ 
Sbjct:   887 LKIYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIDVSSNANELDSIR- 945

Query:   108 SKLYAKDFFVYG-----NYSTRSLPHALYVLPH 135
              K     FF +      N S R++ H   V  H
Sbjct:   946 -KSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIH 977

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

ZFIN|ZDB-GENE-030131-8589 dhx16 "DEAH (Asp-Glu-Ala-His) box polypeptide 16" [Danio rerio (taxid:7955)]

 Score = 326 (119.8 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 74/162 (45%), Positives = 101/162 (62%)

Query:     1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
             MLSK I+AS++YKC  E++ IAAMLS+ NSIFYR KDK +HADNARMNF +   GDH+ L
Sbjct:   836 MLSKMILASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPG-GDHLVL 894

Query:    61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
             L             +WC EN+IQ +SMKRARD++DQLEGL+ R+E+E+ C+ N  D++  
Sbjct:   895 LNVYTQWVESGYSTQWCFENFIQFRSMKRARDVRDQLEGLMDRIEVEL-CSSNG-DSMPI 952

Query:   108 SKLYAKDFFVY------GNYSTRSLPHALYVLPHNTQLSLSP 143
              K     +F +      G Y T      +YV P+++     P
Sbjct:   953 RKAVTAGYFYHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQP 994

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0035987 "endodermal cell differentiation" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5JP46 DHX16 "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16" [Homo sapiens (taxid:9606)]

 Score = 299 (110.3 bits), Expect = 7.0e-26, P = 7.0e-26
 Identities = 67/138 (48%), Positives = 89/138 (64%)

Query:     1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
             MLSK I+AS+KY C  EI+ +AAMLS+ NSIFYR KDK +HADNAR+NF L   GDH+ L
Sbjct:   342 MLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG-GDHLVL 400

Query:    61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
             L             +WC EN++Q +SM+RARD+++QLEGLL RVE+ ++    D   I+ 
Sbjct:   401 LNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY--IRV 458

Query:   108 SKLYAKDFFVYGNYSTRS 125
              K     +F +    TRS
Sbjct:   459 RKAITAGYFYHTARLTRS 476

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

UNIPROTKB|Q5SQH5 DHX16 "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16" [Homo sapiens (taxid:9606)]

 Score = 299 (110.3 bits), Expect = 7.0e-26, P = 7.0e-26
 Identities = 67/138 (48%), Positives = 89/138 (64%)

Query:     1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
             MLSK I+AS+KY C  EI+ +AAMLS+ NSIFYR KDK +HADNAR+NF L   GDH+ L
Sbjct:   342 MLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG-GDHLVL 400

Query:    61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
             L             +WC EN++Q +SM+RARD+++QLEGLL RVE+ ++    D   I+ 
Sbjct:   401 LNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY--IRV 458

Query:   108 SKLYAKDFFVYGNYSTRS 125
              K     +F +    TRS
Sbjct:   459 RKAITAGYFYHTARLTRS 476

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

UNIPROTKB|O60231 DHX16 "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16" [Homo sapiens (taxid:9606)]

 Score = 299 (110.3 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 67/138 (48%), Positives = 89/138 (64%)

Query:     1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
             MLSK I+AS+KY C  EI+ +AAMLS+ NSIFYR KDK +HADNAR+NF L   GDH+ L
Sbjct:   823 MLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG-GDHLVL 881

Query:    61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
             L             +WC EN++Q +SM+RARD+++QLEGLL RVE+ ++    D   I+ 
Sbjct:   882 LNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY--IRV 939

Query:   108 SKLYAKDFFVYGNYSTRS 125
              K     +F +    TRS
Sbjct:   940 RKAITAGYFYHTARLTRS 957

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0003724 "RNA helicase activity" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1PGL2 DHX16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 299 (110.3 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 67/138 (48%), Positives = 89/138 (64%)

Query:     1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
             MLSK I+AS+KY C  EI+ +AAMLS+ NSIFYR KDK +HADNAR+NF L   GDH+ L
Sbjct:   824 MLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG-GDHLVL 882

Query:    61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
             L             +WC EN++Q +SM+RARD+++QLEGLL RVE+ ++    D   I+ 
Sbjct:   883 LNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY--IRV 940

Query:   108 SKLYAKDFFVYGNYSTRS 125
              K     +F +    TRS
Sbjct:   941 RKAITAGYFYHTARLTRS 958

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E1BF68 DHX16 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 299 (110.3 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 67/138 (48%), Positives = 89/138 (64%)

Query:     1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
             MLSK I+AS+KY C  EI+ +AAMLS+ NSIFYR KDK +HADNAR+NF L   GDH+ L
Sbjct:   827 MLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG-GDHLVL 885

Query:    61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
             L             +WC EN++Q +SM+RARD+++QLEGLL RVE+ ++    D   I+ 
Sbjct:   886 LNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY--IRV 943

Query:   108 SKLYAKDFFVYGNYSTRS 125
              K     +F +    TRS
Sbjct:   944 RKAITAGYFYHTARLTRS 961

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1RU83 DHX16 "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16" [Sus scrofa (taxid:9823)]

 Score = 299 (110.3 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 67/138 (48%), Positives = 89/138 (64%)

Query:     1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
             MLSK I+AS+KY C  EI+ +AAMLS+ NSIFYR KDK +HADNAR+NF L   GDH+ L
Sbjct:   827 MLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG-GDHLVL 885

Query:    61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
             L             +WC EN++Q +SM+RARD+++QLEGLL RVE+ ++    D   I+ 
Sbjct:   886 LNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY--IRV 943

Query:   108 SKLYAKDFFVYGNYSTRS 125
              K     +F +    TRS
Sbjct:   944 RKAITAGYFYHTARLTRS 961

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q767K6 DHX16 "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16" [Sus scrofa (taxid:9823)]

 Score = 299 (110.3 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 67/138 (48%), Positives = 89/138 (64%)

Query:     1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
             MLSK I+AS+KY C  EI+ +AAMLS+ NSIFYR KDK +HADNAR+NF L   GDH+ L
Sbjct:   827 MLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG-GDHLVL 885

Query:    61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
             L             +WC EN++Q +SM+RARD+++QLEGLL RVE+ ++    D   I+ 
Sbjct:   886 LNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY--IRV 943

Query:   108 SKLYAKDFFVYGNYSTRS 125
              K     +F +    TRS
Sbjct:   944 RKAITAGYFYHTARLTRS 961

GO:0005634 "nucleus" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ESP3	ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding; Encodes a homolog of the yeast PRP2 protein, one of four related DEAH RNA helicases identified as essential cofactors for RNA splicing. (1044 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	MOS4	MOS4 (Modifier of snc1,4); Encodes MOS4 (Modifier of snc1, 4), a nuclear protein homologous to [...] (253 aa)					•		•		0.978
	AT1G27595	unknown protein; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 15 growth stages; BEST Ar [...] (961 aa)				•			•		0.829
	AT1G71800	cleavage stimulation factor, putative; cleavage stimulation factor, putative; FUNCTIONS IN- pro [...] (461 aa)							•		0.819
	AT1G27590	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (264 aa)							•		0.800
	AT1G52910	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (175 aa)							•		0.788
	ESP4	ESP4 (ENHANCED SILENCING PHENOTYPE 4); binding; Encodes a Symplekin/Pta1 homologue which would [...] (1467 aa)				•			•		0.786
	F18B13.15	SUS2 (ABNORMAL SUSPENSOR 2); a genetic locus involved in embryogenesis. Mutations in this locus [...] (2382 aa)				•	•		•		0.765
	AT3G17640	leucine-rich repeat family protein; leucine-rich repeat family protein; FUNCTIONS IN- protein b [...] (396 aa)							•		0.748
	ESP1	ESP1 (ENHANCED SILENCING PHENOTYPE 1); Resembles the CstF64 family of RNA processing factors th [...] (388 aa)							•		0.742
	EMB2765	EMB2765 (EMBRYO DEFECTIVE 2765); EMBRYO DEFECTIVE 2765 (EMB2765); LOCATED IN- plasma membrane, [...] (1509 aa)				•			•		0.732

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam04408	91	pfam04408, HA2, Helicase associated domain (HA2)	7e-16
smart00847	82	smart00847, HA2, Helicase associated domain (HA2)	2e-11
COG1643	845	COG1643, HrpA, HrpA-like helicases [DNA replicatio	3e-09
TIGR01967	1283	TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H	9e-04

>gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2)

 Score = 68.4 bits (168), Expect = 7e-16
 Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 1  MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           L K ++ S ++ CL EI+ IAAMLS+  S FYR K+K+  AD AR  F   +  DH+TL
Sbjct: 33 RLGKMLLLSAEFGCLDEILTIAAMLSVP-SPFYRPKEKEEEADAARRKFASAE-SDHLTL 90

Query: 61 L 61
          L
Sbjct: 91 L 91

This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 91

>gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 4/61 (6%)

Query: 1  MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           L+K ++A+ ++ CL EI+ I AMLS+G+    R K+K+  AD AR  F   +  DH+TL
Sbjct: 26 RLAKMLLAAAEFGCLDEILTIVAMLSVGD---PRPKEKREDADAARRRFADPE-SDHLTL 81

Query: 61 L 61
          L
Sbjct: 82 L 82

This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 82

>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 27/116 (23%)

Query: 2   LSKTIIASDKYKCLVEIIIIAAMLSIGN--SIFYRL-KDKQIHADNARMNF----HLGD- 53
           L++ ++ + +  CL E   IA+MLS  +  S F R  K ++       +      +  D 
Sbjct: 470 LARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADP 529

Query: 54  VGDHITLL-------------------RWCCENYIQVKSMKRARDIQDQLEGLLTR 90
            GDH+ LL                     C       K++ RA  I   L    + 
Sbjct: 530 RGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSA 585

Length = 845

>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 19/122 (15%)

Query: 2   LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNF------------ 49
           L++ ++ + +  CL E++IIA+ LSI      R  +KQ  AD A   F            
Sbjct: 489 LARMLLEAHRLGCLQEVLIIASALSI-QDPRERPMEKQQAADQAHARFKDPRSDFLSRVN 547

Query: 50  ---HLGDVGDHIT---LLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLD 103
              H+ +    ++       C + Y+    ++  +DI  QL  ++  + +++N    D D
Sbjct: 548 LWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPADYD 607

Query: 104 AI 105
           AI
Sbjct: 608 AI 609

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG0924	1042	consensus mRNA splicing factor ATP-dependent RNA h	100.0
KOG0922	674	consensus DEAH-box RNA helicase [RNA processing an	100.0
KOG0925	699	consensus mRNA splicing factor ATP-dependent RNA h	100.0
PRK11131	1294	ATP-dependent RNA helicase HrpA; Provisional	100.0
KOG0923	902	consensus mRNA splicing factor ATP-dependent RNA h	100.0
TIGR01967	1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.96
KOG0920	924	consensus ATP-dependent RNA helicase A [RNA proces	99.92
KOG0926	1172	consensus DEAH-box RNA helicase [RNA processing an	99.73
PF07717	114	OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi	99.71
COG1643	845	HrpA HrpA-like helicases [DNA replication, recombi	99.62
PF04408	102	HA2: Helicase associated domain (HA2); InterPro: I	99.21
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	98.96
smart00847	92	HA2 Helicase associated domain (HA2) Add an annota	98.87
PRK11664	812	ATP-dependent RNA helicase HrpB; Provisional	97.86
TIGR01970	819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	97.85

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]

Probab=100.00  E-value=2.2e-41  Score=295.66  Aligned_cols=157  Identities=31%  Similarity=0.560  Sum_probs=151.3

Q ss_pred             eeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH-------------HHHHcc
Q 035953            2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR-------------WCCENY   68 (168)
Q Consensus         2 lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~-------------wC~~n~   68 (168)
                      |+||||.|..+||.+|+++||||||| ..+|++|++..++++.+|.+|..++ |||+|+||             ||.+|+
T Consensus       780 lsKmll~a~~~Gc~dEilsIvSmLSv-p~VF~rpker~eead~ar~Kf~~~~-sDhLTlLNVf~qw~~~~~~~~WCnd~~  857 (1042)
T KOG0924|consen  780 LSKMLLMAARMGCSDEILSIVSMLSV-PAVFYRPKEREEEADAAREKFQVPE-SDHLTLLNVFNQWRKNKYSSMWCNDHY  857 (1042)
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHhcc-cceeeccccchhhhhhHHhhhcCCC-CchhhHHHHHHHHHhcCCchhhhhhhh
Confidence            79999999999999999999999999 7999999999999999999999999 99999999             999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccCCC
Q 035953           69 IQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLSL  141 (168)
Q Consensus        69 l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~~~  141 (168)
                      |+.++|+.|.++|+||+++++++++++.++ .+|+.|+||  ||+|||.       .|.|.++.+|.++++||||+|++.
T Consensus       858 l~~kaL~~arevR~ql~~il~~l~~~l~S~-~dwdivrKC--Ics~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~  934 (1042)
T KOG0924|consen  858 LQVKALKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKC--ICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGL  934 (1042)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHH--HHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcC
Confidence            999999999999999999999999999998 799999999  9999999       578999999999999999999996


Q ss_pred             CCCCCCeeEEEecCCCCcccceeEec
Q 035953          142 SPPLNPAAVGHSRSPPFKSKIYGCII  167 (168)
Q Consensus       142 ~~p~~~~vvy~e~~~~~tsk~y~~~~  167 (168)
                      ..|  ++|||+|++  +|+|.|+||+
T Consensus       935 y~p--~Yivyhel~--~T~keym~cv  956 (1042)
T KOG0924|consen  935 YTP--DYIVYHELL--MTTKEYMQCV  956 (1042)
T ss_pred             CCC--CeeeehHHH--HhHHHHHHHH
Confidence            566  999999999  9999999985

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]

Probab=100.00  E-value=4e-40  Score=287.46  Aligned_cols=158  Identities=35%  Similarity=0.561  Sum_probs=149.1

Q ss_pred             CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHH-HHHHhhccccCCCChHHHHHH-------------HHHH
Q 035953            1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIH-ADNARMNFHLGDVGDHITLLR-------------WCCE   66 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~-~~~~r~~f~~~~~sDhltll~-------------wC~~   66 (168)
                      +++|||+.|.++||++|+++||||||+ +++|.+|.+.+.+ ++..|.+|..++ |||+|+|+             ||.+
T Consensus       472 ~lsk~ll~s~~~gc~~e~l~i~a~Lsv-~~~f~~p~~~~~~~a~~~~~kf~~~e-GDh~tlL~vy~~~~~~~~~~~wC~e  549 (674)
T KOG0922|consen  472 HLSKMLLKSSELGCSEEILTIAAMLSV-QSVFSRPKDKKAEDADRKRAKFANPE-GDHLTLLNVYESWKENGTSKKWCKE  549 (674)
T ss_pred             chhhhhhhccccCCcchhhhheeeeec-cceecCccchhhhhhhHHHHhhcCcc-cCHHHHHHHHHHHHhcCChhhHHHH
Confidence            479999999999999999999999999 6999999988877 899999999999 99999999             9999


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccC
Q 035953           67 NYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQL  139 (168)
Q Consensus        67 n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~  139 (168)
                      ||||.++|+.|.+||+||.+++++.+++..+++.+.+.|++|  ||+|||.       ++.|+|+.+|++|+|||||+|+
T Consensus       550 n~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~--l~aGff~N~A~~~~~~~Yrti~~~~~v~IHPSS~l~  627 (674)
T KOG0922|consen  550 NFINARSLKRAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKC--LCAGFFRNVAERDYQDGYRTIRGGQPVYIHPSSVLF  627 (674)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHH--HHHHHHHHHHHhhcCCCeEEccCCcEEEEechHHhh
Confidence            999999999999999999999999999998888899999999  9999999       3349999999999999999999


Q ss_pred             CCCCCCCCeeEEEecCCCCcccceeEec
Q 035953          140 SLSPPLNPAAVGHSRSPPFKSKIYGCII  167 (168)
Q Consensus       140 ~~~~p~~~~vvy~e~~~~~tsk~y~~~~  167 (168)
                      .. .|  +||||+|++  +|||.|+|.+
T Consensus       628 ~~-~p--~~viy~el~--~Ttk~Y~r~V  650 (674)
T KOG0922|consen  628 RR-KP--EWVIYHELL--QTTKEYMRNV  650 (674)
T ss_pred             cC-CC--CEEEEEEEe--ecchHhHhhe
Confidence            84 46  999999999  9999999975

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]

Probab=100.00  E-value=1.4e-39  Score=276.32  Aligned_cols=157  Identities=26%  Similarity=0.442  Sum_probs=147.2

Q ss_pred             CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccCh-hhHHHHHHHhhccccCCCChHHHHHH-------------HHHH
Q 035953            1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLK-DKQIHADNARMNFHLGDVGDHITLLR-------------WCCE   66 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~-~~~~~~~~~r~~f~~~~~sDhltll~-------------wC~~   66 (168)
                      +++||||.|.+|+|++|+++|+||||+ .+.|++|. +.++.++.+|+.|++.+ |||+|++|             ||++
T Consensus       469 qLAkmLi~S~efnCsnEiLsisAMLsv-PncFvRp~~~a~kaAdeak~~faH~d-GDHlTLlnVYhAfkq~~~~~~WC~~  546 (699)
T KOG0925|consen  469 QLAKMLIGSCEFNCSNEILSISAMLSV-PNCFVRPTSSASKAADEAKETFAHID-GDHLTLLNVYHAFKQNNEDPNWCYD  546 (699)
T ss_pred             HHHHHHhhcCCCCchHHHHHHHhcccC-CccccCCChhHHHHHHHHHHHhccCC-cchHHHHHHHHHHHhcCCChhHHHH
Confidence            579999999999999999999999999 79999998 77888999999999999 99999999             9999


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCccccCC----CCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCC
Q 035953           67 NYIQVKSMKRARDIQDQLEGLLTRVEIEVNCN----LNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPH  135 (168)
Q Consensus        67 n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~----~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPs  135 (168)
                      ||||+++|+.|.++|.||.++|++++++..+.    .+...+||||  +++|||+       +|.|.|+++++.|.+|||
T Consensus       547 ~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKA--LvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps  624 (699)
T KOG0925|consen  547 NFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKA--LVSGYFMQVAHLERGGHYLTVKDNQVVQLHPS  624 (699)
T ss_pred             hcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHH--HHHHHHHHHHhhccCCceEEEecCceEEeccc
Confidence            99999999999999999999999999998763    3467799999  9999999       569999999999999999


Q ss_pred             CccCCCCCCCCCeeEEEecCCCCcccceeEec
Q 035953          136 NTQLSLSPPLNPAAVGHSRSPPFKSKIYGCII  167 (168)
Q Consensus       136 S~l~~~~~p~~~~vvy~e~~~~~tsk~y~~~~  167 (168)
                      +++.+  .|  +||+|+|.+  .|+|+||||+
T Consensus       625 ~~l~~--~P--eWVlyneFv--lt~~N~ir~v  650 (699)
T KOG0925|consen  625 TCLDH--KP--EWVLYNEFV--LTTKNFIRTV  650 (699)
T ss_pred             cccCC--CC--CeEEEeeEE--eeccceeeee
Confidence            99976  45  999999999  9999999996

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional

Probab=100.00  E-value=2.3e-35  Score=275.77  Aligned_cols=158  Identities=22%  Similarity=0.361  Sum_probs=146.7

Q ss_pred             CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH------------------
Q 035953            1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR------------------   62 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~------------------   62 (168)
                      ++||||+.|..+||++|+++|||+||+ ++||.+|.+++++++++|.+|.+++ |||++++|                  
T Consensus       497 rlakmLl~a~~~~c~~evl~IaA~Lsv-~dpf~~p~~~~~~a~~~~~~f~~~~-sD~lt~ln~~~~~~~~~~~~s~~~~~  574 (1294)
T PRK11131        497 RLARMVLEAQKHGCVREVMIITSALSI-QDPRERPMDKQQASDEKHRRFADKE-SDFLAFVNLWNYLQEQQKALSSNQFR  574 (1294)
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHcC-CCcccCCchhHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHHHhhhcchHHH
Confidence            479999999999999999999999999 5999999999999999999999999 99999998                  


Q ss_pred             -HHHHccCCHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CC-ceeeecCCCeEEEc
Q 035953           63 -WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YG-NYSTRSLPHALYVL  133 (168)
Q Consensus        63 -wC~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~-~Y~~~~~~~~v~iH  133 (168)
                       ||++||||+++|+++.+++.||.++++++|++.++++++.+.|++|  |++|||.       ++ .|.+.. +..++||
T Consensus       575 ~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~~i~~a--ll~G~~~nva~~~~~~~~y~~~~-~~~~~ih  651 (1294)
T PRK11131        575 RLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHTA--LLTGLLSHIGMKDAEKQEYTGAR-NARFSIF  651 (1294)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHH--HHhhcHHHHeeccCCCCeEEccC-CcEEEEc
Confidence             9999999999999999999999999999999988777789999999  9999998       22 577765 7889999


Q ss_pred             CCCccCCCCCCCCCeeEEEecCCCCcccceeEecC
Q 035953          134 PHNTQLSLSPPLNPAAVGHSRSPPFKSKIYGCIIA  168 (168)
Q Consensus       134 PsS~l~~~~~p~~~~vvy~e~~~~~tsk~y~~~~~  168 (168)
                      |+|+|++ ..|  +||||+|++  .|||.|+|+++
T Consensus       652 P~S~L~~-~~p--~wvv~~Elv--~Tsr~y~r~va  681 (1294)
T PRK11131        652 PGSGLFK-KPP--KWVMVAELV--ETSRLWGRIAA  681 (1294)
T ss_pred             CCccccC-CCC--CEEEEEeee--ccChhhhhhhc
Confidence            9999998 566  899999999  99999999975

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]

Probab=100.00  E-value=3e-33  Score=244.11  Aligned_cols=157  Identities=55%  Similarity=0.820  Sum_probs=149.1

Q ss_pred             CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH-------------HHHHc
Q 035953            1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR-------------WCCEN   67 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~-------------wC~~n   67 (168)
                      ||||||+.|..++|.+|+++||||||++.++|.+|.++.-.+|.+|+.|..+. |||+++|+             ||++|
T Consensus       688 mlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~-gDhi~~L~vyn~w~es~~s~~wC~e~  766 (902)
T KOG0923|consen  688 MLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPV-GDHIVLLNVYNQWKESKYSTQWCYEN  766 (902)
T ss_pred             HHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCC-cchhhhhHHHHHHhhcchhhHHHHHh
Confidence            68999999999999999999999999988899999999999999999999888 99999999             99999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccCC
Q 035953           68 YIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLS  140 (168)
Q Consensus        68 ~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~~  140 (168)
                      |+++++|++|.++|.||..++.+.++...++.++...||++  +.+|||+       +|.|+|+...+.|++||.|+++.
T Consensus       767 ~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~irk~--i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~  844 (902)
T KOG0923|consen  767 FIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKA--ITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFE  844 (902)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHH--HhccccccceeccCCCcceeeccCcceeecCcccccc
Confidence            99999999999999999999999999988887788999999  9999999       57899999888899999999998


Q ss_pred             CCCCCCCeeEEEecCCCCcccceeE
Q 035953          141 LSPPLNPAAVGHSRSPPFKSKIYGC  165 (168)
Q Consensus       141 ~~~p~~~~vvy~e~~~~~tsk~y~~  165 (168)
                       ..|  .||||+|++  +|||.|+|
T Consensus       845 -~~P--~wvvy~eLv--~tske~mr  864 (902)
T KOG0923|consen  845 -QLP--RWVVYHELV--LTSKEFMR  864 (902)
T ss_pred             -cCC--ceEEEeehh--cChHHHHH
Confidence             566  899999999  99999986

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA

Probab=99.96  E-value=9.7e-30  Score=238.64  Aligned_cols=158  Identities=23%  Similarity=0.380  Sum_probs=144.7

Q ss_pred             CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH------------------
Q 035953            1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR------------------   62 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~------------------   62 (168)
                      ++||||+.|..+||++++++|||+||+ ++||.+|.++++++++++..|.+++ |||++++|                  
T Consensus       488 rlarmLl~a~~~gcl~e~l~IaA~Ls~-~dp~~~p~~~~~~a~~~~~~f~~~~-sD~l~~L~~~~~~~~~~~~~~~~~~~  565 (1283)
T TIGR01967       488 RLARMLLEAHRLGCLQEVLIIASALSI-QDPRERPMEKQQAADQAHARFKDPR-SDFLSRVNLWRHIEEQRQALSANQFR  565 (1283)
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHcC-CCcCCCcchhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHhhhhccchHHH
Confidence            479999999999999999999999999 5999999999999999999999988 99999998                  


Q ss_pred             -HHHHccCCHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcC
Q 035953           63 -WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLP  134 (168)
Q Consensus        63 -wC~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHP  134 (168)
                       ||++||||++.|+++.++++||.++++++|++..+++.+.+.+.+|  |++||++       ++.|.+.. |..+.|||
T Consensus       566 ~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~i~~~--l~~g~~~~iA~~~~~~~y~~~~-g~~~~ihP  642 (1283)
T TIGR01967       566 NACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPADYDAIHKA--LLSGLLSQIGMKDEKHEYDGAR-GRKFHIFP  642 (1283)
T ss_pred             HHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCccHHHHHHH--HHHhhHHHHheeCCCCcEEecC-CcEEEECC
Confidence             8999999999999999999999999999998876666677789999  9999999       35798875 67899999


Q ss_pred             CCccCCCCCCCCCeeEEEecCCCCcccceeEecC
Q 035953          135 HNTQLSLSPPLNPAAVGHSRSPPFKSKIYGCIIA  168 (168)
Q Consensus       135 sS~l~~~~~p~~~~vvy~e~~~~~tsk~y~~~~~  168 (168)
                      +|+|++ ..|  +||||.|++  .|++.|+|+++
T Consensus       643 ~S~L~~-~~p--~wvv~~elv--~t~~~~ir~~a  671 (1283)
T TIGR01967       643 GSPLFK-KPP--KWVMAAELV--ETSKLYARLVA  671 (1283)
T ss_pred             CccccC-CCC--CEEEEeeec--ccchheEeeec
Confidence            999988 455  999999999  89999999875

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]

Probab=99.92  E-value=2e-24  Score=196.66  Aligned_cols=160  Identities=18%  Similarity=0.279  Sum_probs=136.6

Q ss_pred             CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH------------------
Q 035953            1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR------------------   62 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~------------------   62 (168)
                      ++||||+.|..|||+|++++|||+||. ++||+.|.+++++++++++.|..+..|||+++++                  
T Consensus       628 ~igK~ll~g~if~cLdp~l~iaa~Ls~-k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~  706 (924)
T KOG0920|consen  628 RIGKLLLFGAIFGCLDPALTIAAALSF-KSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKD  706 (924)
T ss_pred             ccchhheehhhccccchhhhHHHHhcc-CCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHH
Confidence            579999999999999999999999999 7999999999999999999888655699999999                  


Q ss_pred             HHHHccCCHHHHHHHHHHHHHHHHHHHhcCccccC------------CCCChHHHHhHHHhhchhCCCC-----------
Q 035953           63 WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNC------------NLNDLDAIKFSKLYAKDFFVYG-----------  119 (168)
Q Consensus        63 wC~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~------------~~~~~~~i~~~~~l~~g~~~~~-----------  119 (168)
                      ||++|||+..+|+++.++|.|+.+.+.++|+...+            ...+.+.++.+  +|+||||+-           
T Consensus       707 fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~irav--l~a~lyP~i~~~~~~~~~~~  784 (924)
T KOG0920|consen  707 FCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAV--LCAGLYPNIAFVRRMEPKSK  784 (924)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHH--HhccCCCceeeeecccCCcC
Confidence            99999999999999999999999999999875432            12467889999  999999921           


Q ss_pred             --ceeeecCCCeEEEcCCCccCCCCCCCCCeeEEEecCCCCccc-ceeEe
Q 035953          120 --NYSTRSLPHALYVLPHNTQLSLSPPLNPAAVGHSRSPPFKSK-IYGCI  166 (168)
Q Consensus       120 --~Y~~~~~~~~v~iHPsS~l~~~~~p~~~~vvy~e~~~~~tsk-~y~~~  166 (168)
                        .|.+- ....+.|||+|+.........||++|+|.+  .|++ .|+|.
T Consensus       785 ~~~~~~~-~~~~v~i~~~sv~~~~~~~~~p~l~~~~k~--~t~~~~~~rd  831 (924)
T KOG0920|consen  785 SVTFVTK-ADGRVIIHPSSVNEQSTGFQSPFLVFPEKV--KSTRLVSLRD  831 (924)
T ss_pred             cceeecC-CceeEEEecchhhccccccCCcceEEeeec--ccCCcceeee
Confidence              11222 224799999999987544456899999999  8888 88874

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=2.6e-18  Score=153.56  Aligned_cols=155  Identities=19%  Similarity=0.292  Sum_probs=122.6

Q ss_pred             CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccCh-------------hh-------------------HHHHHHHhhc
Q 035953            1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLK-------------DK-------------------QIHADNARMN   48 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~-------------~~-------------------~~~~~~~r~~   48 (168)
                      ++||||+.|.+.+|+...+.++|+||+ ..+|+...             +.                   +.+...++.+
T Consensus       786 rfsKmL~~~~Q~~~lpy~i~lvsaLsv-~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~r  864 (1172)
T KOG0926|consen  786 RFSKMLATSDQHNLLPYNIALVSALSV-YEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSR  864 (1172)
T ss_pred             hHHHHHHHHHhhcchhHHHHHHHHHhc-cchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhh
Confidence            579999999999999999999999999 58886411             11                   1122335566


Q ss_pred             cccCCCChHHHHHH-------------HHHHccCCHHHHHHHHHHHHHHHHHHHhcCccc-------cC-CCC--ChHHH
Q 035953           49 FHLGDVGDHITLLR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEV-------NC-NLN--DLDAI  105 (168)
Q Consensus        49 f~~~~~sDhltll~-------------wC~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~-------~~-~~~--~~~~i  105 (168)
                      |.... ||-|+++.             ||..|||..++|.++.++|+||..+++..++..       .. .+.  ....+
T Consensus       865 f~~l~-sd~l~Ll~Av~a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lL  943 (1172)
T KOG0926|consen  865 FSNLD-SDALVLLSAVSAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLL  943 (1172)
T ss_pred             hccCC-ccHHHHHHHHHHHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHH
Confidence            77777 99999999             999999999999999999999999998554322       11 122  34578


Q ss_pred             HhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccCCCCCCCCCeeEEEecCCCCccccee
Q 035953          106 KFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLSLSPPLNPAAVGHSRSPPFKSKIYG  164 (168)
Q Consensus       106 ~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~~~~~p~~~~vvy~e~~~~~tsk~y~  164 (168)
                      ++.  +|+||.+       -..|.+..-+.+++|||.|+|+. +.|  +||+|+|++  .|...|+
T Consensus       944 rQ~--i~Ag~~DrVArk~~~~~y~~~~i~~~~fl~~~svl~~-~ap--e~viY~el~--~~~~~~~ 1002 (1172)
T KOG0926|consen  944 RQM--ICAGFADRVARKVDATEYDAAKIQEPVFLHRWSVLIN-SAP--ELVIYQELL--LTNRPYM 1002 (1172)
T ss_pred             HHH--HHHHHHHHHHHhccccccchhhhcCceeeeehhhhhc-cCc--cceehhhhh--hcCCccc
Confidence            999  9999999       12577777788999999999998 677  999999999  6665543

>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO)

Probab=99.71  E-value=2.5e-17  Score=117.44  Aligned_cols=79  Identities=23%  Similarity=0.323  Sum_probs=62.1

Q ss_pred             HHHHHHHHhcCccccCC-----------C--CChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccCCC
Q 035953           82 DQLEGLLTRVEIEVNCN-----------L--NDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLSL  141 (168)
Q Consensus        82 ~QL~~~l~~~~~~~~~~-----------~--~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~~~  141 (168)
                      +||.++|++.|+...+.           .  ++.+.|++|  ||+|||+       ++.|+++.++..++|||+|++++ 
T Consensus         1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~-   77 (114)
T PF07717_consen    1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAA--LCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFK-   77 (114)
T ss_dssp             HHHHHHHHHTT----------TTST-----HTHCHHHHHH--HHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTT-
T ss_pred             CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHH--HHHhhhhheEEeCCCCCEEEecCCCEEEEecCccccc-
Confidence            69999999998865432           1  345789999  9999999       57899998888999999999977 


Q ss_pred             CCCCCCeeEEEecCCCCcccceeEec
Q 035953          142 SPPLNPAAVGHSRSPPFKSKIYGCII  167 (168)
Q Consensus       142 ~~p~~~~vvy~e~~~~~tsk~y~~~~  167 (168)
                      ..|  +||||+|++  .|+|.|+|.+
T Consensus        78 ~~p--~~vvy~e~~--~t~k~y~~~~   99 (114)
T PF07717_consen   78 KPP--KWVVYHELV--RTSKPYMRDV   99 (114)
T ss_dssp             TT---SEEEEEEEE--ESSSEEEEEE
T ss_pred             ccc--ccchhhhhe--ecCCcEEEEC
Confidence            566  899999999  8999999975

In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]

Probab=99.62  E-value=1.7e-16  Score=145.11  Aligned_cols=157  Identities=22%  Similarity=0.144  Sum_probs=125.8

Q ss_pred             CeeeeEeccCCCCChHHHHHHHHHhhcCCC---ccccChhhHH---HHHHHh-hcccc---CCCChHHHHHH--------
Q 035953            1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNS---IFYRLKDKQI---HADNAR-MNFHL---GDVGDHITLLR--------   62 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~---~f~~p~~~~~---~~~~~r-~~f~~---~~~sDhltll~--------   62 (168)
                      ++||||+.|..+||++|+++|||+||++ +   .|.++.+.++   +.+.++ ..+..   +. |||+++++        
T Consensus       469 rLA~mLl~a~~~g~~~e~~~Ias~Ls~~-~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~d~~~ll~~~~~~i~~  546 (845)
T COG1643         469 RLARMLLTAPEGGCLGEAATIASMLSEQ-DRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPR-GDHLLLLEAFPDRIAR  546 (845)
T ss_pred             HHHHHHHhccccCcHHHHHHHHHhhccC-CCcchhccccchhhHHHHHHHHHHHHhccCCCcc-hHHHHHHHHHHHHHHh
Confidence            5799999999999999999999999994 6   5887766555   344333 44444   56 99999999        


Q ss_pred             -----------HHHHccCCHHHHHHHHHHHHHHHHHHHh-cCccccCCC------------------CChHHHHhHHHhh
Q 035953           63 -----------WCCENYIQVKSMKRARDIQDQLEGLLTR-VEIEVNCNL------------------NDLDAIKFSKLYA  112 (168)
Q Consensus        63 -----------wC~~n~l~~~~l~~~~~ir~QL~~~l~~-~~~~~~~~~------------------~~~~~i~~~~~l~  112 (168)
                                 ||..++++.++|.++..++.|+.....+ .+.+....+                  ..++.++++  ++
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--l~  624 (845)
T COG1643         547 KRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGA--LA  624 (845)
T ss_pred             hhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccchhHHHHhhh--hh
Confidence                       9999999999999999999999998877 443332211                  136889999  99


Q ss_pred             chhCC-------CC-ceeeecCCCeEEEcCCCccCCCCCCCCCeeEEEecCCCCcccceeE
Q 035953          113 KDFFV-------YG-NYSTRSLPHALYVLPHNTQLSLSPPLNPAAVGHSRSPPFKSKIYGC  165 (168)
Q Consensus       113 ~g~~~-------~~-~Y~~~~~~~~v~iHPsS~l~~~~~p~~~~vvy~e~~~~~tsk~y~~  165 (168)
                      +|++.       ++ .|.+..++..+.+||+|+-.....+  +|++|++.+  .|++.|++
T Consensus       625 a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~--~~~~~~~~~--~~~~~~~~  681 (845)
T COG1643         625 AGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGLVLL--EWIKYAEFL--RTRKGYLR  681 (845)
T ss_pred             hheecceeeeeccccccccCCCCceeEecchhHhhcccCc--chHHHHHHH--HHHHHHHh
Confidence            99999       23 4888888999999999973332444  999999999  99999987

>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length

Probab=99.21  E-value=4e-12  Score=89.23  Aligned_cols=59  Identities=41%  Similarity=0.625  Sum_probs=39.5

Q ss_pred             CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHH--HHhh---------ccccCCCChHHHHH
Q 035953            1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHAD--NARM---------NFHLGDVGDHITLL   61 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~--~~r~---------~f~~~~~sDhltll   61 (168)
                      ++||||+.|..+||++++++|||+||+ +++|..|.+.+++.+  +.+.         .+.+.. |||+|+|
T Consensus        33 ~~a~~Ll~~~~~~~~~~~~~iaa~ls~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sDhltlL  102 (102)
T PF04408_consen   33 RLAKMLLYGIQFGCLDEALIIAAILSV-RSPFINPDDKEENAEQDNAKKKFRIKQARKKFSDDE-SDHLTLL  102 (102)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHTS-S--B---CCGHHHHHH--HHHTT----------BTT-BHHHHHH
T ss_pred             HhHhHhhhccccccHHHHHHHHHHHcC-CCcccCccHHHHHHHHHHHHHHhhhhhcccccCCCC-CCHHhcC
Confidence            479999999999999999999999999 799999764433222  2333         346777 9999986

It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=98.96  E-value=1.4e-09  Score=99.31  Aligned_cols=149  Identities=13%  Similarity=0.188  Sum_probs=107.7

Q ss_pred             CeeeeEeccCCCCChHHHHHHHHHhhcCCCcccc--ChhhHHHHHHHhhccccCCCChHHHHHH----------------
Q 035953            1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYR--LKDKQIHADNARMNFHLGDVGDHITLLR----------------   62 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~--p~~~~~~~~~~r~~f~~~~~sDhltll~----------------   62 (168)
                      +++||++.+..++|.+-|+.+|+.+|. ..+|+.  |...+-  .-.++.|++..++||.....                
T Consensus       857 ~~~k~~~lg~~~g~~~~m~~~as~~s~-~~~~~~~~~~~~rl--~g~q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e  933 (1282)
T KOG0921|consen  857 RIGKMMILGTALGAGSVMCDVASAMSF-PTPFVPREKHHSRL--SGTQRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAE  933 (1282)
T ss_pred             cccceeeechhhccchhhhhhhccccc-cccccccccccccc--ccchhhccccccccchhhhhhhhhhHHHhhhhhhhh
Confidence            368999999999999999999999999 577763  111121  12345566665667766655                


Q ss_pred             --HHHHccCCHHHHHHHHHHHHHHHHHHHhcCccccC--------C-C-CChHHHHhHHHhhchhCCCCc-e----eee-
Q 035953           63 --WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNC--------N-L-NDLDAIKFSKLYAKDFFVYGN-Y----STR-  124 (168)
Q Consensus        63 --wC~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~--------~-~-~~~~~i~~~~~l~~g~~~~~~-Y----~~~-  124 (168)
                        ||...+++.+.|+.....++||...|++.+++...        + + ++...++..  ||.++|++.. |    +.+ 
T Consensus       934 ~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~l--L~~~lypn~~~y~ekrkvLt 1011 (1282)
T KOG0921|consen  934 REFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSL--LVMALYPNVAYYVEKRKVLT 1011 (1282)
T ss_pred             hhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHH--HHhhcCCccceeccceeEEe
Confidence              99999999999999999999999999988765421        1 2 233445555  8888888432 2    233 


Q ss_pred             cCCCeEEEcCCCccC--CC---CCCCCCeeEEEecC
Q 035953          125 SLPHALYVLPHNTQL--SL---SPPLNPAAVGHSRS  155 (168)
Q Consensus       125 ~~~~~v~iHPsS~l~--~~---~~p~~~~vvy~e~~  155 (168)
                      .++....||-+|++.  .+   .+| .||.||.|.+
T Consensus      1012 Te~~~alihk~Svncp~S~qdM~fP-sPFFVFGEKI 1046 (1282)
T KOG0921|consen 1012 TEQSSALIHKYSVNCPNSRQEMDFP-SPFFVFGEKI 1046 (1282)
T ss_pred             ecchhhhhhhhcccCCCcccccCCC-Cceeeechhh
Confidence            345667888888886  22   456 5999999999

>smart00847 HA2 Helicase associated domain (HA2) Add an annotation

Probab=98.87  E-value=6.7e-10  Score=75.99  Aligned_cols=58  Identities=47%  Similarity=0.699  Sum_probs=50.0

Q ss_pred             CeeeeEeccCCC-CChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccC-CCChHHHHH
Q 035953            1 MLSKTIIASDKY-KCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLG-DVGDHITLL   61 (168)
Q Consensus         1 ~lsK~Ll~s~~~-~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~-~~sDhltll   61 (168)
                      ++||||+.|..+ +|.+++++|+|++++ .++|..| +.+.+....|..|... . |||++++
T Consensus        33 rla~~Ll~a~~~~~c~~~~~~i~a~ls~-~~~~~~~-~~~~~~~~~~~~~~~~~~-~D~~~~l   92 (92)
T smart00847       33 RLAKMLLAAAELFGCLDEILTIAAMLSV-GDPFPRP-EKRAEADAARRRFASGRE-SDHLTLL   92 (92)
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHhcC-CCCcCCc-hHHHHHHHHHHHccCCCC-CChhhhC
Confidence            479999999999 999999999999999 5888877 5566777788889877 6 9999874

This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional

Probab=97.86  E-value=7.8e-05  Score=69.36  Aligned_cols=122  Identities=14%  Similarity=-0.020  Sum_probs=76.3

Q ss_pred             CeeeeEeccCCCCChH--HHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHHHHHHccCCHHHHHHHH
Q 035953            1 MLSKTIIASDKYKCLV--EIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLRWCCENYIQVKSMKRAR   78 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~--~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~wC~~n~l~~~~l~~~~   78 (168)
                      ++|||||.|.++||..  .++.+||+|+. +.+  ..               ..+.+|++.-+.        ...+..+.
T Consensus       420 rla~~ll~a~~~~~~~l~~a~~laall~e-~~~--~~---------------~~d~~~~l~~~~--------~~~~~~~~  473 (812)
T PRK11664        420 RLAAMLVAAKEDDEAALATAAKLAAILEE-PPR--SG---------------SSDLGVALSRKQ--------PHWQQRAQ  473 (812)
T ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHhhcc-CCC--CC---------------cccHHHHHHHHH--------HHHHHHHH
Confidence            5799999999999653  66677777765 211  00               001134443222        12234455


Q ss_pred             HHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccCCCCCCCCCeeEE
Q 035953           79 DIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLSLSPPLNPAAVG  151 (168)
Q Consensus        79 ~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~~~~~p~~~~vvy  151 (168)
                      ++.+|+....   + .     .+.+.+.++  ++.||++       ++.|..+.+|..+.+||+|.|.+.     +|+|+
T Consensus       474 ~~~~~~~~~~---~-~-----~~~~~~~~~--la~aypdriA~~r~~~~~~~l~~G~~a~l~~~~~l~~~-----~~lv~  537 (812)
T PRK11664        474 QLLKRLNVRG---G-E-----ADSSLIAPL--LALAFPDRIARRRGQDGRYQLANGMGAMLDADDALSRH-----EWLIA  537 (812)
T ss_pred             HHHHHHHhhc---c-c-----CChHHHHHH--HHHHCHHHHhhhcCCCCeEEeeCCCeEEECCCCcccCC-----CeEEE
Confidence            5555554321   1 1     133457778  9999988       234556668999999999999762     89999


Q ss_pred             EecCCCCcc-cceeEe
Q 035953          152 HSRSPPFKS-KIYGCI  166 (168)
Q Consensus       152 ~e~~~~~ts-k~y~~~  166 (168)
                      .|+.  .++ +.+.||
T Consensus       538 a~~~--~~~~~~~~ri  551 (812)
T PRK11664        538 PLLL--QGSASPDARI  551 (812)
T ss_pred             EEhh--ccCcccccee
Confidence            9997  553 566554

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB

Probab=97.85  E-value=0.00011  Score=68.43  Aligned_cols=123  Identities=15%  Similarity=0.105  Sum_probs=77.2

Q ss_pred             CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHHHHHHccCCHHHHHHHHHH
Q 035953            1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLRWCCENYIQVKSMKRARDI   80 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~wC~~n~l~~~~l~~~~~i   80 (168)
                      ++||||+.|..+||.+++++|||+||. ++++-.                 .. +|....+++.+...  ......+.++
T Consensus       417 ~l~~~ll~~~~~~~~~~~~~iaa~ls~-~~~~~~-----------------~~-~d~~~~~~~~~~~~--~~~~~~~~~~  475 (819)
T TIGR01970       417 RLAAMLLSAHSTGLAALACDLAALLEE-RGLPRQ-----------------GG-ADLMNRLHRLQQGR--QGRGQRAQQL  475 (819)
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHcC-CCCCCC-----------------Cc-ccHHHHHHHHhhcc--hhhHHHHHHH
Confidence            479999999999999999999999999 454321                 13 67766666323221  2233344555


Q ss_pred             HHHHHHHHHhcCcccc-CCCCChHHHHhHHHhhchhCC--------CCceeeecCCCeEEEcCCCccCCCCCCCCCeeEE
Q 035953           81 QDQLEGLLTRVEIEVN-CNLNDLDAIKFSKLYAKDFFV--------YGNYSTRSLPHALYVLPHNTQLSLSPPLNPAAVG  151 (168)
Q Consensus        81 r~QL~~~l~~~~~~~~-~~~~~~~~i~~~~~l~~g~~~--------~~~Y~~~~~~~~v~iHPsS~l~~~~~p~~~~vvy  151 (168)
                      .+|+.+.+   +.... ........+-.+  ++.+|.+        .+.|. +.+|.-+.++|.|.|.+.     +|+|-
T Consensus       476 ~~~~~~~~---~~~~~~~~~~~~~~~g~l--la~a~pdria~~r~~~~~y~-l~~G~~~~l~~~~~l~~~-----~~l~~  544 (819)
T TIGR01970       476 AKKLRRRL---RFSQADSGAIASHALGLL--LALAFPDRIAKRRGQPGRYQ-LANGRGAVLSAEDALARE-----PWLVA  544 (819)
T ss_pred             HHHHHHHh---CcCcCCCcccccchHhHH--HhhhChHhheeccCCCCeEE-CCCCCeeEeCCCCcccCC-----CeEEE
Confidence            55665433   22101 011110113334  7777777        23464 457888999999999873     89999


Q ss_pred             EecC
Q 035953          152 HSRS  155 (168)
Q Consensus       152 ~e~~  155 (168)
                      .|+.
T Consensus       545 a~~~  548 (819)
T TIGR01970       545 ADLG  548 (819)
T ss_pred             EEee
Confidence            9986

This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
3i4u_A	270	Crystal Structure Analysis Of A Helicase Associated		8e-16
3kx2_B	767	Crystal Structure Of Prp43p In Complex With Adp Len		7e-12
2xau_A	773	Crystal Structure Of The Prp43p Deah-Box Rna Helica		7e-12

>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 15/108 (13%)
Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           ML K +I S    C  E++ I +MLS+ N +FYR KDKQ  AD  +  FH  + GDH+TL
Sbjct: 54  MLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VFYRPKDKQALADQKKAKFHQTE-GDHLTL 111
Query: 61  LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEV 95
           L              WC EN+IQ +S++RA+DI+ Q+ G++ R +++V
Sbjct: 112 LAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDV 159

>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 25/138 (18%)
Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           ML+  +I S +++C  EI+ I AMLS+ N      KDK+  AD+A+  F   D GDHITL
Sbjct: 525 MLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKK-RADDAKNIFAHPD-GDHITL 582
Query: 61  L-----------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLD 103
           L                 +WC ++Y+  +S+  A +I+ QLE L+ R  +E+N    D +
Sbjct: 583 LNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNT--TDYE 640
Query: 104 AIKF----SKLYAKDFFV 117
           + K+     K  A  FF+
Sbjct: 641 SPKYFDNIRKALASGFFM 658

>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 25/138 (18%)
Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           ML+  +I S +++C  EI+ I AMLS+ N      KDK+  AD+A+  F   D GDHITL
Sbjct: 525 MLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKK-RADDAKNIFAHPD-GDHITL 582
Query: 61  L-----------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLD 103
           L                 +WC ++Y+  +S+  A +I+ QLE L+ R  +E+N    D +
Sbjct: 583 LNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNT--TDYE 640
Query: 104 AIKF----SKLYAKDFFV 117
           + K+     K  A  FF+
Sbjct: 641 SPKYFDNIRKALASGFFM 658

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	9e-41
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	2e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270

 Score =  137 bits (346), Expect = 9e-41
 Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 15/119 (12%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           ML K +I S    C  E++ I +MLS+ N +FYR KDKQ  AD  +  FH  + GDH+TL
Sbjct: 54  MLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VFYRPKDKQALADQKKAKFHQTE-GDHLTL 111

Query: 61  L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIK 106
           L              WC EN+IQ +S++RA+DI+ Q+ G++ R +++V         ++
Sbjct: 112 LAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQ 170

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773

 Score =  129 bits (326), Expect = 2e-35
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 19/113 (16%)

Query: 1   MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
           ML+  +I S +++C  EI+ I AMLS+ N +F R    +  AD+A+  F   D GDHITL
Sbjct: 525 MLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTKDKKRADDAKNIFAHPD-GDHITL 582

Query: 61  L-----------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVN 96
           L                 +WC ++Y+  +S+  A +I+ QLE L+ R  +E+N
Sbjct: 583 LNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELN 635

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 37/148 (25%)

Query: 41  HADNARMNFHLGDVGDHITLLRWCCENYIQV--KSMKR---ARDIQDQLEGLLTRVEIEV 95
           H  +  M+F  G+        ++  ++ + V   +       +D+QD  + +L++ EI+ 
Sbjct: 1   HHHHHHMDFETGE-------HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH 53

Query: 96  NCNL-NDLDAIK--FSKLYAK-----DFFVYG----NYS-----------TRSLPHALYV 132
                + +      F  L +K       FV      NY              S+   +Y+
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 133 LPHNTQLSLSPPLNPAAVGHSRSPPFKS 160
              +   + +       V  SR  P+  
Sbjct: 114 EQRDRLYNDNQVFAKYNV--SRLQPYLK 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	100.0
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	99.98

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-42  Score=281.63  Aligned_cols=159  Identities=34%  Similarity=0.579  Sum_probs=149.9

Q ss_pred             CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH-------------HHHHc
Q 035953            1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR-------------WCCEN   67 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~-------------wC~~n   67 (168)
                      ++||||+.|..+||++++++|||+||+ ++||++|.+.+++++++|.+|.+++ |||+|++|             ||++|
T Consensus        54 ~lakmLl~a~~~~c~~~~l~iaA~Ls~-~~~f~~p~~~~~~a~~~~~~f~~~~-sD~ltlLn~~~~~~~~~~~~~wC~~~  131 (270)
T 3i4u_A           54 MLCKMLIMSVHLGCSEEMLTIVSMLSV-QNVFYRPKDKQALADQKKAKFHQTE-GDHLTLLAVYNSWKNNKFSNPWCYEN  131 (270)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTS-SCCBCCCGGGHHHHHHHHHTTCBTT-BHHHHHHHHHHHHHHTTTCHHHHHHT
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHCC-CccccCCchhHHHHHHHHHHccCCC-ChHHHHHHHHHHHHHcCchhhHHHHh
Confidence            479999999999999999999999999 6999999999999999999999999 99999998             99999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccCC
Q 035953           68 YIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLS  140 (168)
Q Consensus        68 ~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~~  140 (168)
                      |||+++|+++.++|+||.+++++.+++..+++.+.+.|++|  ||+|||+       ++.|+++.+|+.|+|||||+|++
T Consensus       132 fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~~~~~~i~~~--L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~  209 (270)
T 3i4u_A          132 FIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKA--ICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFN  209 (270)
T ss_dssp             TBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTCTHHHHHH--HHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTT
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCcchHHHHHHH--HHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcC
Confidence            99999999999999999999999999887777788999999  9999999       56899999999999999999998


Q ss_pred             CCCCCCCeeEEEecCCCCcccceeEecC
Q 035953          141 LSPPLNPAAVGHSRSPPFKSKIYGCIIA  168 (168)
Q Consensus       141 ~~~p~~~~vvy~e~~~~~tsk~y~~~~~  168 (168)
                       ..|  +||||+|++  .|||.|+|.++
T Consensus       210 -~~p--~wvvy~Elv--~Tsk~y~r~vt  232 (270)
T 3i4u_A          210 -RQP--EWVVYHELV--LTTKEYMREVT  232 (270)
T ss_dssp             -SCC--SEEEEEEEE--ESSSEEEEEEE
T ss_pred             -CCC--CEEEEEehh--hhhHhHHHhcc
Confidence             456  999999999  99999999863

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=99.98  E-value=3.8e-32  Score=246.66  Aligned_cols=158  Identities=32%  Similarity=0.499  Sum_probs=142.4

Q ss_pred             CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH-----------------H
Q 035953            1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR-----------------W   63 (168)
Q Consensus         1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~-----------------w   63 (168)
                      ++||||+.|..++|++++++||||||+ +++|++|.+.+++++.+|..|.+++ |||+++++                 |
T Consensus       525 ~~~~~l~~~~~~~c~~~~l~i~a~ls~-~~~f~~~~~~~~~~~~~~~~f~~~~-~D~~~~l~~~~~~~~~~~~~~~~~~~  602 (773)
T 2xau_A          525 MLAVMLIGSFEFQCSQEILTIVAMLSV-PNVFIRPTKDKKRADDAKNIFAHPD-GDHITLLNVYHAFKSDEAYEYGIHKW  602 (773)
T ss_dssp             HHHHHHHHGGGGTCHHHHHHHHHHHTS-CCCBCCCTTCHHHHHHHHHTTCCTT-BHHHHHHHHHHHHTSHHHHHHCHHHH
T ss_pred             HHHHHHHhhcccCchhHHHHHHHhccc-CCcccCChHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHhccccchHHHH
Confidence            378999999999999999999999999 6999999999999999999999989 99999998                 8


Q ss_pred             HHHccCCHHHHHHHHHHHHHHHHHHHhcCccccCCC----CChHHHHhHHHhhchhCC-------CCc-eeeecCCCeEE
Q 035953           64 CCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNL----NDLDAIKFSKLYAKDFFV-------YGN-YSTRSLPHALY  131 (168)
Q Consensus        64 C~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~----~~~~~i~~~~~l~~g~~~-------~~~-Y~~~~~~~~v~  131 (168)
                      |++||||+++|+++.++|+||.+++++.+++..+++    ++++.|++|  |++|||+       +|. |.++.++..|+
T Consensus       603 c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~--l~~g~~~~~a~~~~~~~~y~~~~~~~~~~  680 (773)
T 2xau_A          603 CRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKA--LASGFFMQVAKKRSGAKGYITVKDNQDVL  680 (773)
T ss_dssp             HHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHH--HHHHHTTSEEEECCC--CEEETTTCCEEE
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHH--HHHhChHhheeeccCCCcceEeeCCCEEE
Confidence            999999999999999999999999999998775532    345789999  9999999       344 99999999999


Q ss_pred             EcCCCccCCCCCCCCCeeEEEecCCCCcccceeEecC
Q 035953          132 VLPHNTQLSLSPPLNPAAVGHSRSPPFKSKIYGCIIA  168 (168)
Q Consensus       132 iHPsS~l~~~~~p~~~~vvy~e~~~~~tsk~y~~~~~  168 (168)
                      |||+|+|..  .|  +||||+|++  .|+|.|+|.++
T Consensus       681 ihp~s~l~~--~~--~~~v~~e~~--~t~~~~~~~~~  711 (773)
T 2xau_A          681 IHPSTVLGH--DA--EWVIYNEFV--LTSKNYIRTVT  711 (773)
T ss_dssp             ECTTCCCCT--TC--SEEEEEEEE--ESSSEEEEEEE
T ss_pred             ECCCcccCC--CC--CEEEEEEee--ccchhheeecc
Confidence            999999954  35  999999999  89999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1yksa2	299	c.37.1.14 (A:325-623) YFV helicase domain {Yellow	3e-10

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

 Score = 55.4 bits (133), Expect = 3e-10
 Identities = 7/71 (9%), Positives = 18/71 (25%), Gaps = 11/71 (15%)

Query: 17  EIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL-----------RWCC 65
           ++       +     F   ++ +I  D+          G    L            +   
Sbjct: 229 QVAKAGLKTNDRKWCFEGPEEHEILNDSGETVKCRAPGGAKKPLRPRWCDERVSSDQSAL 288

Query: 66  ENYIQVKSMKR 76
             +I+    +R
Sbjct: 289 SEFIKFAEGRR 299

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1yksa2	299	YFV helicase domain {Yellow fever virus [TaxId: 11	90.31

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.31  E-value=0.00099  Score=52.14  Aligned_cols=61  Identities=10%  Similarity=0.064  Sum_probs=42.6

Q ss_pred             ChHHHHHHHHHhhcCCCccccChhhHHHHHHHh-hccccCCCChHHHHHH-----------HHHHccCCHHHHH
Q 035953           14 CLVEIIIIAAMLSIGNSIFYRLKDKQIHADNAR-MNFHLGDVGDHITLLR-----------WCCENYIQVKSMK   75 (168)
Q Consensus        14 C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r-~~f~~~~~sDhltll~-----------wC~~n~l~~~~l~   75 (168)
                      |..+++.+..+.+..+.+|..|.+.+-..+..+ ..|..+. |||+++++           ||.+|||+++.|+
T Consensus       226 La~~va~~~~~~~~~~~~f~~P~e~~i~~~~~~~~~f~~~~-Gd~~~L~~r~~D~R~~sd~~~l~nFiq~a~~r  298 (299)
T d1yksa2         226 LSWQVAKAGLKTNDRKWCFEGPEEHEILNDSGETVKCRAPG-GAKKPLRPRWCDERVSSDQSALSEFIKFAEGR  298 (299)
T ss_dssp             HHHHHHHTTCCTTCCGGGSCSCGGGCCBCTTSCBCEEECTT-SCEEECCCSSEEGGGSSSHHHHHHHHHHHTTT
T ss_pred             hHHHHHhcccccccccceeECchhchhhhhhccccceeCCC-cceeeeeeeEecccccCcHHHHHHHHHHHhcC
Confidence            445666666666654558888876543333333 4688888 99999887           8889998887765