Citrus Sinensis ID: 036010

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
IIVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKILEY
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHcccEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHccEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEcEEEEEEEEEccccccccccccEccHHHHHHHHHHHHHHHHccHHHHHHHccEEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
IIVGFKNRYMVVEVFldpdkelpmddpviltqFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKILEY
Flexible Loop (DISEMBL)
iivgfknrymVVEVFLDpdkelpmdDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKILEY
Low Complexity Region (SEG)
IIVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKILEY
Disordered region (IsUnstruct)
*IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKI***
Disordered Region (DISOPRED)
IIVGFKNRYMVVEVFLDPDKELPM**PVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIF*********************CLEKIKIL**
Disordered Region (DISEMBL)
IIVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKILEY
Disordered Region (DISPRO)
IIVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKILE*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IIVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKILEY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q6AWV1	151	Probable ribonuclease P/M	yes	no	0.961	0.986	0.603	1e-47
Q9UU90	139	Ribonucleases P/MRP prote	yes	no	0.754	0.841	0.325	7e-13
Q54EP3	171	Probable ribonuclease P/M	yes	no	0.716	0.649	0.305	2e-10
Q969H6	163	Ribonuclease P/MRP protei	yes	no	0.670	0.638	0.327	7e-09
Q1JQ92	170	Ribonuclease P/MRP protei	yes	no	0.670	0.611	0.310	1e-07
Q9DB28	169	Ribonuclease P/MRP protei	yes	no	0.677	0.621	0.3	7e-07

>sp|Q6AWV1|POP5_ARATH Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1

 Score =  188 bits (478), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 121/154 (78%), Gaps = 5/154 (3%)

Query: 2   IVGFKNRYMVVEVFLDPDKELPMDD-PVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
           +VGFKNRYM++EVFLDPDK+L  +  P+ILTQFN+SKAI+D+ILVNF ECGL S LGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKRE 120
           VKYVNPITKLCI+++S E+ ++VW AIT+V+SIGNC V+ N+LD+SG IRAC++ ALK +
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 EVIFEHYKLAVGARFSADVTQHMDNCLEKIKILE 154
           +  FE          S +  + M+  LEKIK+LE
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLE 150

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 5

>sp|Q9UU90|POP5_SCHPO Ribonucleases P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC830.09c PE=3 SV=1

 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 6/123 (4%)

Query: 2   IVGFKNRYMVVEVFLDPDKELPMDDPVI-----LTQFNVSKAIRDNILVNFSECGLASLL 56
           +V FK+RY++ EV     KE   D P I     +T  ++SK IR  +  NF + G+  + 
Sbjct: 1   MVRFKSRYLLFEVLYPEAKEF-FDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVA 59

Query: 57  GSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAA 116
            S  VKY +P T   I++ S + F+  W+A+ ++R +    V+  V+ +SG+I+  + AA
Sbjct: 60  SSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAA 119

Query: 117 LKR 119
           ++R
Sbjct: 120 IER 122

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP, which cleaves pre-rRNA sequences.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q54EP3|POP5_DICDI Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum GN=pop5 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 7/118 (5%)

Query: 2   IVGFKNRYMVVEV-FLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
           +V  KNRY++ EV + D +K   + D  +  QF +S  +++ +     E    +   + +
Sbjct: 1   MVRLKNRYLMTEVIWHDNEKSTQLSDSWLF-QF-ISNEVKEKL----GELTYEAFKKTLK 54

Query: 61  VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALK 118
           + YVNP T + II+ S E ++ +W+A+T++ S     + F ++ + GSIR C+ AA+K
Sbjct: 55  IIYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIK 112

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q969H6|POP5_HUMAN Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens GN=POP5 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 15/119 (12%)

Query: 2   IVGFKNRYMVVE-VFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
           +V FK+RY++ E V  DP   L +DD V+      S  +RD I       G A+    F 
Sbjct: 1   MVRFKHRYLLCELVSDDPRCRLSLDDRVL------SSLVRDTIARVHGTFGAAACSIGFA 54

Query: 61  VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGN------CLVLFNVLDLSGSIRACK 113
           V+Y+N  T + +++   E +Q VWSA+  +  + N      C   FN L + G+IR C+
Sbjct: 55  VRYLNAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPC--FFNTLHVGGTIRTCQ 111

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q1JQ92|POP5_BOVIN Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus GN=POP5 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 15/119 (12%)

Query: 2   IVGFKNRYMVVEVFLD-PDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
           +V FK+RY++ EV  D P   L ++D V+ T       +RD I       G A+    F 
Sbjct: 1   MVRFKHRYLLCEVVSDDPRCRLTLEDRVLGT------LVRDTIARVHGTFGAAACSIGFA 54

Query: 61  VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGN------CLVLFNVLDLSGSIRACK 113
           V+Y+N  T + +++   E ++ VWSA+  + S+ N      C +  N L + G+IR C+
Sbjct: 55  VRYLNAYTGIVLLRCRKEFYRLVWSALPFITSLENKGHRYPCFL--NTLHVGGTIRTCQ 111

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q9DB28|POP5_MOUSE Ribonuclease P/MRP protein subunit POP5 OS=Mus musculus GN=Pop5 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 15/120 (12%)

Query: 2   IVGFKNRYMVVE-VFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
           +V FK+RY++ E V  D    L +DD V+         +RD I       G A+    F 
Sbjct: 1   MVRFKHRYLLCELVSEDARCRLSLDDRVL------GGLVRDTIARVHGAFGAAACSVGFA 54

Query: 61  VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGN------CLVLFNVLDLSGSIRACKN 114
           V+Y+N  T + +++   + +Q VWSA+  +  + N      C   FN L + G+IR C+ 
Sbjct: 55  VRYLNAYTGVVLLRCRKDFYQLVWSALPFITYLENKGHRYPC--FFNTLHVGGTIRTCQK 112

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
224132544	154	predicted protein [Populus trichocarpa]	0.993	1.0	0.772	3e-65
118482082	154	unknown [Populus trichocarpa]	0.993	1.0	0.766	5e-65
224135587	154	predicted protein [Populus trichocarpa]	0.993	1.0	0.766	2e-64
224132540	154	predicted protein [Populus trichocarpa]	0.993	1.0	0.766	1e-63
225455163	154	PREDICTED: probable ribonuclease P/MRP p	0.993	1.0	0.727	4e-62
255544312	144	lipoate-protein ligase B, putative [Rici	0.929	1.0	0.756	9e-59
356500813	154	PREDICTED: probable ribonuclease P/MRP p	0.993	1.0	0.707	2e-58
351727563	154	uncharacterized protein LOC100527772 [Gl	0.993	1.0	0.701	1e-57
449443879	154	PREDICTED: probable ribonuclease P/MRP p	0.987	0.993	0.679	3e-55
357490389	153	hypothetical protein MTR_5g068650 [Medic	0.974	0.986	0.642	4e-51

>gi|224132544|ref|XP_002321344.1| predicted protein [Populus trichocarpa] gi|222868340|gb|EEF05471.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/154 (77%), Positives = 138/154 (89%)

Query: 2   IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQV 61
           +VGFKNRYMV+EVFLDP+++L +DDP+I+TQ+NVSKAI+D+ILVNF ECGLAS LGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFGECGLASSLGSFQV 60

Query: 62  KYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREE 121
           KYVNPITKLCII+ S E++QKVWSAITMVR IGNC VLFN+LDLSGSI+ACK AALK +E
Sbjct: 61  KYVNPITKLCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGSIKACKVAALKCDE 120

Query: 122 VIFEHYKLAVGARFSADVTQHMDNCLEKIKILEY 155
           + FEHYKLA GA  S DV QHM NCLEKIKILE+
Sbjct: 121 MKFEHYKLAAGAPLSTDVNQHMQNCLEKIKILEH 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482082|gb|ABK92972.1| unknown [Populus trichocarpa]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 118/154 (76%), Positives = 138/154 (89%)

Query: 2   IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQV 61
           +VGFKNRYMV+EVFLDP+++L +DDP+++TQ+NVSKAI+D+ILVNF ECGLAS LGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIVITQYNVSKAIKDSILVNFGECGLASSLGSFQV 60

Query: 62  KYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREE 121
           KYVNPITKLCII+ S E++QKVWSAITMVR IGNC VLFN+LDLSGSI+ACK AALK +E
Sbjct: 61  KYVNPITKLCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGSIKACKVAALKCDE 120

Query: 122 VIFEHYKLAVGARFSADVTQHMDNCLEKIKILEY 155
           + FEHYKLA GA  S DV QHM NCLEKIKILE+
Sbjct: 121 MKFEHYKLAAGAPLSTDVNQHMQNCLEKIKILEH 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135587|ref|XP_002327255.1| predicted protein [Populus trichocarpa] gi|222835625|gb|EEE74060.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/154 (76%), Positives = 137/154 (88%)

Query: 2   IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQV 61
           +VGFKNRYMV+EVFLDP+++L +DDP+I+TQ+NVSKAI+D+ILVNF ECGLAS LGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFGECGLASSLGSFQV 60

Query: 62  KYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREE 121
           KYVNPITKLCII+ S E++QKVWSAITMVR IGNC VLFN+LDLSGSI+ACK AALK +E
Sbjct: 61  KYVNPITKLCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGSIKACKVAALKCDE 120

Query: 122 VIFEHYKLAVGARFSADVTQHMDNCLEKIKILEY 155
           + FEHYKLA GA  S DV QHM NCLEKI ILE+
Sbjct: 121 MKFEHYKLAAGAPLSPDVNQHMQNCLEKINILEH 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132540|ref|XP_002321342.1| predicted protein [Populus trichocarpa] gi|222868338|gb|EEF05469.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 118/154 (76%), Positives = 137/154 (88%)

Query: 2   IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQV 61
           +VGFKNRYMV+EVFLDP+++L +DDP+I+TQ+NVSKAI+D+ILVNF ECGLAS LGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFRECGLASSLGSFQV 60

Query: 62  KYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREE 121
           KYVNPITKL II+ S E++QKVWSAITMVR IGNC VLFN+LDLSG I+ACK AALK +E
Sbjct: 61  KYVNPITKLYIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGDIKACKVAALKCDE 120

Query: 122 VIFEHYKLAVGARFSADVTQHMDNCLEKIKILEY 155
           + FEHYKLA GA  SADV QHM NCLEKIKILE+
Sbjct: 121 MKFEHYKLAAGAPLSADVNQHMQNCLEKIKILEH 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455163|ref|XP_002268478.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Vitis vinifera] gi|302144009|emb|CBI23114.3| unnamed protein product [Vitis vinifera]

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 112/154 (72%), Positives = 136/154 (88%)

Query: 2   IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQV 61
           +VGFKNRYM++EVFLDP+++L +DDP+I+TQFNVSKAI+D+ILVNF ECGLAS  GSFQV
Sbjct: 1   MVGFKNRYMIMEVFLDPNRDLAVDDPIIITQFNVSKAIKDSILVNFGECGLASSFGSFQV 60

Query: 62  KYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREE 121
           KYVNPITKLCII+AS E++QKVWSAITMV+SIG+C VLFN+LDLSGSIRAC+NAALK ++
Sbjct: 61  KYVNPITKLCIIRASREEYQKVWSAITMVKSIGHCPVLFNLLDLSGSIRACRNAALKCDK 120

Query: 122 VIFEHYKLAVGARFSADVTQHMDNCLEKIKILEY 155
             FE YKL VG R + D+   M NCLE+IKILE+
Sbjct: 121 AKFEQYKLVVGDRLTDDINNQMQNCLERIKILEH 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544312|ref|XP_002513218.1| lipoate-protein ligase B, putative [Ricinus communis] gi|223547716|gb|EEF49209.1| lipoate-protein ligase B, putative [Ricinus communis]

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 109/144 (75%), Positives = 128/144 (88%)

Query: 12  VEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLC 71
           +E+FLDP+++L  DDP+I+TQFNVSKAI+++ILVN+ ECGLAS LGSFQVKYVNPITKLC
Sbjct: 1   MEIFLDPNRDLNTDDPIIITQFNVSKAIKESILVNYGECGLASSLGSFQVKYVNPITKLC 60

Query: 72  IIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEHYKLAV 131
           II+AS E++QKVWSA+TMVRSIGNC VLFN+LDLSGSIRACK AALK +E  FE +KLAV
Sbjct: 61  IIRASREEYQKVWSAVTMVRSIGNCPVLFNLLDLSGSIRACKRAALKCDEAKFEQHKLAV 120

Query: 132 GARFSADVTQHMDNCLEKIKILEY 155
           G   SADVT HM NCLEKIKILE+
Sbjct: 121 GDHLSADVTLHMQNCLEKIKILEH 144

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500813|ref|XP_003519225.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5-like [Glycine max]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 132/154 (85%)

Query: 2   IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQV 61
           +VGF+NRYMV+EVFL+P+++   DD VI+TQFNVSKA+RD+ILVNF ECGLAS LGSFQV
Sbjct: 1   MVGFRNRYMVMEVFLNPNRDKGGDDSVIVTQFNVSKAVRDSILVNFGECGLASSLGSFQV 60

Query: 62  KYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREE 121
           KYVNPIT +CII+AS E +QKVWSAITMV +IGNC V+FN+LDLSGSIRACKNAALK EE
Sbjct: 61  KYVNPITNVCIIRASREQYQKVWSAITMVTNIGNCPVMFNLLDLSGSIRACKNAALKCEE 120

Query: 122 VIFEHYKLAVGARFSADVTQHMDNCLEKIKILEY 155
             FE YKL +G RFS+D T  M+  L++IK+LE+
Sbjct: 121 SKFEQYKLMLGDRFSSDHTHRMNTYLDRIKVLEH 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727563|ref|NP_001237165.1| uncharacterized protein LOC100527772 [Glycine max] gi|255633176|gb|ACU16944.1| unknown [Glycine max]

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 108/154 (70%), Positives = 132/154 (85%)

Query: 2   IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQV 61
           +VGF+NRYMV+EVFL+P+++   D  VI+TQFNVSKA+RD+ILVNF ECGLAS LGSFQV
Sbjct: 1   MVGFRNRYMVMEVFLNPNRDKVGDASVIITQFNVSKAVRDSILVNFGECGLASSLGSFQV 60

Query: 62  KYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREE 121
           KYVNPIT +CII+AS E++QKVW+AITMV +IGNC V+FN+LDLSGSIRACKNAALK EE
Sbjct: 61  KYVNPITNVCIIRASREEYQKVWAAITMVTNIGNCPVMFNLLDLSGSIRACKNAALKCEE 120

Query: 122 VIFEHYKLAVGARFSADVTQHMDNCLEKIKILEY 155
             FE YKL +G RFSAD T  M+  L++IK+LE+
Sbjct: 121 SKFEQYKLMLGDRFSADHTHRMNTYLDRIKVLEH 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443879|ref|XP_004139703.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5-like [Cucumis sativus] gi|449517176|ref|XP_004165622.1| PREDICTED: probable ribonuclease P/MRP protein subunit POP5-like [Cucumis sativus]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/153 (67%), Positives = 123/153 (80%)

Query: 2   IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQV 61
           +V FKNRYMV EV LDP+K+L  DDP+I+TQ+NVSKAI+D+IL+NF ECG AS LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 62  KYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREE 121
           KYVNPITK+CII+AS ED+Q VW+AITMVRSI NC V+FN+LDLSG+ RACKN AL+ E 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 122 VIFEHYKLAVGARFSADVTQHMDNCLEKIKILE 154
           + FE YKL VG     +V   M NCLEKI  LE
Sbjct: 121 LKFEQYKLMVGHYLPDNVNLQMQNCLEKIATLE 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490389|ref|XP_003615482.1| hypothetical protein MTR_5g068650 [Medicago truncatula] gi|355516817|gb|AES98440.1| hypothetical protein MTR_5g068650 [Medicago truncatula]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 97/151 (64%), Positives = 125/151 (82%)

Query: 5   FKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYV 64
           FKNRYMV+EVF++P+K+    D +I+TQFNVS AI+D+ILVNF ECGLA+ LGSFQVKYV
Sbjct: 3   FKNRYMVMEVFMNPNKDQAAGDSIIITQFNVSNAIKDSILVNFGECGLAASLGSFQVKYV 62

Query: 65  NPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIF 124
           NPIT +CII+AS E+++KVW++ITMVRSIGN  V+FN+LDLSG+++A K AALK EE  F
Sbjct: 63  NPITNVCIIRASREEYEKVWASITMVRSIGNFPVVFNLLDLSGNLQATKTAALKCEEAKF 122

Query: 125 EHYKLAVGARFSADVTQHMDNCLEKIKILEY 155
           E +KL VG R SA+ T  M+N L KI++LE+
Sbjct: 123 EQFKLMVGDRLSAEDTHRMNNHLAKIEVLEH 153

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:504956160	151	EMB1687 "AT1G04635" [Arabidops	0.961	0.986	0.603	1.9e-44
POMBASE|SPCC830.09c	139	SPCC830.09c "RNase P and RNase	0.767	0.856	0.32	2.1e-13
DICTYBASE|DDB_G0291662	171	pop5 "RNase MRP protein subuni	0.716	0.649	0.305	1.7e-11
UNIPROTKB|Q969H6	163	POP5 "Ribonuclease P/MRP prote	0.683	0.650	0.333	2.2e-09
RGD|1311819	169	Pop5 "processing of precursor	0.774	0.710	0.288	9.7e-09
UNIPROTKB|G1K1B6	170	POP5 "Ribonuclease P/MRP prote	0.670	0.611	0.310	1.6e-08
UNIPROTKB|Q1JQ92	170	POP5 "Ribonuclease P/MRP prote	0.670	0.611	0.310	1.6e-08
MGI|MGI:2151221	169	Pop5 "processing of precursor	0.683	0.627	0.299	1.1e-07
FB|FBgn0036696	145	CG14057 [Drosophila melanogast	0.735	0.786	0.264	2.3e-07
UNIPROTKB|F1RJI5	167	POP5 "Uncharacterized protein"	0.683	0.634	0.319	2.9e-07

TAIR|locus:504956160 EMB1687 "AT1G04635" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 93/154 (60%), Positives = 123/154 (79%)

Query:     2 IVGFKNRYMVVEVFLDPDKELPMDD-PVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
             +VGFKNRYM++EVFLDPDK+L  +  P+ILTQFN+SKAI+D+ILVNF ECGL S LGSFQ
Sbjct:     1 MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query:    61 VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKRE 120
             VKYVNPITKLCI+++S E+ ++VW AIT+V+SIGNC V+ N+LD+SG IRAC++ ALK +
Sbjct:    61 VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query:   121 EVIFEHYKLAVGARFSADVTQHMDNCLEKIKILE 154
             +  FE    ++    S +  + M+  LEKIK+LE
Sbjct:   121 KEKFEQCSKSL----SEEEIRQMNTSLEKIKLLE 150

GO:0004526 "ribonuclease P activity" evidence=ISS

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008033 "tRNA processing" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0005773 "vacuole" evidence=IDA

POMBASE|SPCC830.09c SPCC830.09c "RNase P and RNase MRP subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 40/125 (32%), Positives = 70/125 (56%)

Query:     2 IVGFKNRYMVVEVFLDPDKELPMDDPVI-----LTQFNVSKAIRDNILVNFSECGLASLL 56
             +V FK+RY++ EV     KE   D P I     +T  ++SK IR  +  NF + G+  + 
Sbjct:     1 MVRFKSRYLLFEVLYPEAKEF-FDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVA 59

Query:    57 GSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAA 116
              S  VKY +P T   I++ S + F+  W+A+ ++R +    V+  V+ +SG+I+  + AA
Sbjct:    60 SSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAA 119

Query:   117 LKREE 121
             ++R +
Sbjct:   120 IERNK 124

GO:0000172 "ribonuclease MRP complex" evidence=ISO

GO:0005655 "nucleolar ribonuclease P complex" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0008033 "tRNA processing" evidence=ISO

GO:0000171 "ribonuclease MRP activity" evidence=ISO

GO:0004526 "ribonuclease P activity" evidence=ISO

DICTYBASE|DDB_G0291662 pop5 "RNase MRP protein subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 36/118 (30%), Positives = 66/118 (55%)

Query:     2 IVGFKNRYMVVEVFL-DPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
             +V  KNRY++ EV   D +K   + D  +  QF +S  +++ +     E    +   + +
Sbjct:     1 MVRLKNRYLMTEVIWHDNEKSTQLSDSWLF-QF-ISNEVKEKL----GELTYEAFKKTLK 54

Query:    61 VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALK 118
             + YVNP T + II+ S E ++ +W+A+T++ S     + F ++ + GSIR C+ AA+K
Sbjct:    55 IIYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIK 112

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA;IC

GO:0005634 "nucleus" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA;ISS

GO:0000171 "ribonuclease MRP activity" evidence=ISS

GO:0006364 "rRNA processing" evidence=IC

GO:0005655 "nucleolar ribonuclease P complex" evidence=ISS

GO:0000172 "ribonuclease MRP complex" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q969H6 POP5 "Ribonuclease P/MRP protein subunit POP5" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 39/117 (33%), Positives = 61/117 (52%)

Query:     2 IVGFKNRYMVVEVFLD-PDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
             +V FK+RY++ E+  D P   L +DD V+      S  +RD I       G A+    F 
Sbjct:     1 MVRFKHRYLLCELVSDDPRCRLSLDDRVL------SSLVRDTIARVHGTFGAAACSIGFA 54

Query:    61 VKYVNPITKLCIIKASMEDFQKVWSA---ITMVRSIGNCL-VLFNVLDLSGSIRACK 113
             V+Y+N  T + +++   E +Q VWSA   IT + + G+     FN L + G+IR C+
Sbjct:    55 VRYLNAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQ 111

GO:0004526 "ribonuclease P activity" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

RGD|1311819 Pop5 "processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 39/135 (28%), Positives = 67/135 (49%)

Query:     2 IVGFKNRYMVVE-VFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
             +V FK+RY++ E V  DP   L +DD V+         +RD I       G A+    F 
Sbjct:     1 MVRFKHRYLLCELVSEDPRCRLSLDDRVL------GGLVRDTIARVHGAFGAAACSVGFA 54

Query:    61 VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGN----CLVLFNVLDLSGSIRACKNAA 116
             V+Y+N  T + +++   + +Q VWSA+  +  + N        FN L + G+IR C+   
Sbjct:    55 VRYLNAYTGVVLLRCRKDFYQLVWSALPFITCLENKGHRYSCFFNTLHVGGTIRTCQKFL 114

Query:   117 LK--REE--VIFEHY 127
             ++  R +  V+ ++Y
Sbjct:   115 IQYNRRQLLVLLQNY 129

GO:0004526 "ribonuclease P activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=ISO

GO:0008033 "tRNA processing" evidence=IEA;ISO

UNIPROTKB|G1K1B6 POP5 "Ribonuclease P/MRP protein subunit POP5" [Bos taurus (taxid:9913)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 37/119 (31%), Positives = 61/119 (51%)

Query:     2 IVGFKNRYMVVEVFLD-PDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
             +V FK+RY++ EV  D P   L ++D V+ T       +RD I       G A+    F 
Sbjct:     1 MVRFKHRYLLCEVVSDDPRCRLTLEDRVLGT------LVRDTIARVHGTFGAAACSIGFA 54

Query:    61 VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGN------CLVLFNVLDLSGSIRACK 113
             V+Y+N  T + +++   E ++ VWSA+  + S+ N      C +  N L + G+IR C+
Sbjct:    55 VRYLNAYTGIVLLRCRKEFYRLVWSALPFITSLENKGHRYPCFL--NTLHVGGTIRTCQ 111

GO:0008033 "tRNA processing" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

UNIPROTKB|Q1JQ92 POP5 "Ribonuclease P/MRP protein subunit POP5" [Bos taurus (taxid:9913)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 37/119 (31%), Positives = 61/119 (51%)

Query:     2 IVGFKNRYMVVEVFLD-PDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
             +V FK+RY++ EV  D P   L ++D V+ T       +RD I       G A+    F 
Sbjct:     1 MVRFKHRYLLCEVVSDDPRCRLTLEDRVLGT------LVRDTIARVHGTFGAAACSIGFA 54

Query:    61 VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGN------CLVLFNVLDLSGSIRACK 113
             V+Y+N  T + +++   E ++ VWSA+  + S+ N      C +  N L + G+IR C+
Sbjct:    55 VRYLNAYTGIVLLRCRKEFYRLVWSALPFITSLENKGHRYPCFL--NTLHVGGTIRTCQ 111

GO:0005730 "nucleolus" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

MGI|MGI:2151221 Pop5 "processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 35/117 (29%), Positives = 60/117 (51%)

Query:     2 IVGFKNRYMVVEVFLDPDK-ELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
             +V FK+RY++ E+  +  +  L +DD V+         +RD I       G A+    F 
Sbjct:     1 MVRFKHRYLLCELVSEDARCRLSLDDRVL------GGLVRDTIARVHGAFGAAACSVGFA 54

Query:    61 VKYVNPITKLCIIKASMEDFQKVWSA---ITMVRSIGNCL-VLFNVLDLSGSIRACK 113
             V+Y+N  T + +++   + +Q VWSA   IT + + G+     FN L + G+IR C+
Sbjct:    55 VRYLNAYTGVVLLRCRKDFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQ 111

GO:0000171 "ribonuclease MRP activity" evidence=ISA

GO:0000172 "ribonuclease MRP complex" evidence=ISA

GO:0004526 "ribonuclease P activity" evidence=IDA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISA

GO:0008033 "tRNA processing" evidence=IDA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

FB|FBgn0036696 CG14057 [Drosophila melanogaster (taxid:7227)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 32/121 (26%), Positives = 60/121 (49%)

Query:     2 IVGFKNRYMVVEVF-LDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQ 60
             +V  KNRY+ V++    P + L ++D       +++K +  N+   +   GLA +   F+
Sbjct:     1 MVRIKNRYIAVQIVPYTPTQSLRLND------HSLTKILLQNVEKYYGVYGLAVIEQGFR 54

Query:    61 VKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKRE 120
             VKY+N  TK+ II+      + V S + ++  IG+    F  L +  +I  C    +K +
Sbjct:    55 VKYINDRTKMAIIRCLHRGQRFVSSVLPLITLIGDVRAKFRTLYIGATIIQCNKFIVKHQ 114

Query:   121 E 121
             +
Sbjct:   115 K 115

GO:0004526 "ribonuclease P activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|F1RJI5 POP5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 38/119 (31%), Positives = 64/119 (53%)

Query:     2 IVGFKNRYMVVEVFL-DPDKELPMDDPVILTQFNVSKAIRDNIL-VNFSECGLASLLG-S 58
             +V FK+RY++ EV   DP   L ++D V+         +RD I  V+ +    AS +G +
Sbjct:     1 MVRFKHRYLLCEVVSEDPRCRLNLEDRVL------GGLVRDTIARVHGTFGAAASSIGFA 54

Query:    59 FQVKYVNPITKLCIIKASMEDFQKVWSA---ITMVRSIGNCL-VLFNVLDLSGSIRACK 113
               V+Y+N  T + +++   E ++ VWSA   IT + + G+     FN L + G+IR C+
Sbjct:    55 AAVRYLNAYTGIVLLRCRKEFYRLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQ 113

GO:0008033 "tRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6AWV1	POP5_ARATH	3, ., 1, ., 2, 6, ., 5	0.6038	0.9612	0.9867	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.26	0.691
3rd Layer	3.1.26.5	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XV0034 SubName- Full=Putative uncharacterized protein; (155 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
pfam01900	103	pfam01900, RNase_P_Rpp14, Rpp14/Pop5 family	1e-28
COG1369	124	COG1369, POP5, RNase P/RNase MRP subunit POP5 [Tra	3e-10

>gnl|CDD|216773 pfam01900, RNase_P_Rpp14, Rpp14/Pop5 family

 Score =  101 bits (253), Expect = 1e-28
 Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 8/111 (7%)

Query: 8   RYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPI 67
           RY++ E+  +    L        ++ ++ KAIR+ +   F + G A    S  VKY NP 
Sbjct: 1   RYILFEIISEDPSSL--------SRKDLLKAIREAVKELFGDFGAAKAGPSLIVKYFNPK 52

Query: 68  TKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALK 118
           T   I++      + VW+A+T++ SIG   V+  VL +SG+I+ C+   ++
Sbjct: 53  TGTGILRCRRGYVRLVWAALTLITSIGGKPVIIRVLGVSGTIKKCEEKLIR 103

tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40. This protein is known as Pop5 in eukaryotes. Length = 103

>gnl|CDD|224288 COG1369, POP5, RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]

 Score = 54.3 bits (131), Expect = 3e-10
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 12/114 (10%)

Query: 6   KNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVN 65
           + RY+  EV    ++E+   +        + + IR ++L    + G A         Y  
Sbjct: 15  RKRYIAFEVI--SEEEITRGE--------LVRLIRRSLLSLLGDVGTAKANPRLVKYY-- 62

Query: 66  PITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKR 119
             T   I++   E    V +A+ + R +    V+  VL +SG+I+  K   L+R
Sbjct: 63  FSTGTGIVRCRREYVDLVRAALMLAREVNGKRVIIVVLGVSGTIKKAKRKFLRR 116

Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
KOG4639	154	consensus RNase P/RNase MRP subunit POP5 [Translat	100.0
PRK03717	120	ribonuclease P protein component 2; Provisional	100.0
PF01900	107	RNase_P_Rpp14: Rpp14/Pop5 family; InterPro: IPR002	100.0
COG1369	124	POP5 RNase P/RNase MRP subunit POP5 [Translation,	99.96

>KOG4639 consensus RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.7e-44  Score=267.42  Aligned_cols=144  Identities=24%  Similarity=0.450  Sum_probs=136.6

Q ss_pred             ccccCCcEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHH
Q 036010            2 IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQ   81 (155)
Q Consensus         2 MVR~K~RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~   81 (155)
                      |||+|||||+||+++++++     .+.+++...|.+.+|..+.++|||||+|.+.++|.|+|+|+.|+.+||||.+++++
T Consensus         1 MVRiK~RYilvel~~~~p~-----~~~~~~~siL~~iir~~v~~~~Gd~G~a~~~s~l~VkYl~~~T~v~ilRc~~~~~k   75 (154)
T KOG4639|consen    1 MVRIKNRYILVELLFPDPP-----PDLSLKDSILQSIIRSRVSENYGDFGLAKVKSLLSVKYLNENTSVAILRCAREGCK   75 (154)
T ss_pred             CceeeeeEEEEEEecCCCC-----CCCCcchHHHHHHHHHHHHHHhhhHHHHHhhcceEEEEeCCCCcEEEEEEccccch
Confidence            9999999999999998663     34568888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhCCeEEEEEEEeeechHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhc
Q 036010           82 KVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKIL  153 (155)
Q Consensus        82 ~v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (155)
                      .+|+|||+|++++|.||.|++++||||||+|++++++++++.++..   .|++.+++|+++++++++++...
T Consensus        76 ~v~~aLplI~~i~d~~~~~~tl~Vggtik~cekfiik~nr~el~~~---l~~~t~~~~r~~~~~~v~~~~~~  144 (154)
T KOG4639|consen   76 LVWAALPLITKIGDVPCIFRTLFVGGTIKKCEKFIIKYNRSELHRI---LGKCTSTEERDQLFEAVHQICGQ  144 (154)
T ss_pred             hHHHHHhHHHhhcCcceEEEEEEEhhhHHHHHHHHHHHhHHHHHHH---HhhcCchhhhhhHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999888   99999999999999999998754

>PRK03717 ribonuclease P protein component 2; Provisional

Probab=100.00  E-value=4.3e-36  Score=221.41  Aligned_cols=103  Identities=24%  Similarity=0.309  Sum_probs=96.1

Q ss_pred             cccCCcEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHHH
Q 036010            3 VGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQK   82 (155)
Q Consensus         3 VR~K~RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~~   82 (155)
                      ||+||||++|||+++++          +++++|.++||++++++|||+|+|.+.  ++++|||+.|+.|||||+|++++.
T Consensus        12 lR~K~RYi~~ei~~~~~----------~~~~~l~~~Ir~av~~~fGd~G~~~~~--~~li~f~~~t~~gIlRc~R~~~~~   79 (120)
T PRK03717         12 LRDKNRYIAFQVIGERP----------FTKDEIKKAIWEASLSTLGELGTARAK--PWFIKFDEKTQTGIVRCDRKHVEE   79 (120)
T ss_pred             ccccceEEEEEEEeCCC----------CCHHHHHHHHHHHHHHHcChhhhcccc--ceEEEEeCCCCEEEEEcCchhHHH
Confidence            79999999999998653          789999999999999999999999886  556799999999999999999999


Q ss_pred             HHHHHHhhhhhCCeEEEEEEEeeechHHHHHHHHH
Q 036010           83 VWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAAL  117 (155)
Q Consensus        83 v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i  117 (155)
                      +|+||++|++++|.||.|+|++||||||+|+++++
T Consensus        80 v~aAL~li~~i~~~~v~ir~l~vSGTIk~~~~k~l  114 (120)
T PRK03717         80 LRFALTLVTEINGSKAIIRTLGVSGTIKRLKRKFL  114 (120)
T ss_pred             HHHHHHHHHhCCCeeEEEEEeeccHHHHHHHHHhh
Confidence            99999999999999999999999999999975554

>PF01900 RNase_P_Rpp14: Rpp14/Pop5 family; InterPro: IPR002759 This family contains proteins found in some eukaryotes and archaebacteria that are related to yeast ribonuclease P

Probab=100.00  E-value=4.2e-35  Score=210.37  Aligned_cols=107  Identities=38%  Similarity=0.636  Sum_probs=90.5

Q ss_pred             cEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHHHHHHHH
Q 036010            8 RYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWSAI   87 (155)
Q Consensus         8 RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~~v~aaL   87 (155)
                      |||+||+.++|+.     ++..+++.+|.++|++++.++|||+|+|.+.++|.|+||||.|+.|||||+|++++.+|+||
T Consensus         1 RYi~~~i~~~~~~-----~~~~~~~~~l~~~I~~a~~~l~G~~G~~~~~~~l~v~~~~~~t~~~IiR~~r~~~~~v~~aL   75 (107)
T PF01900_consen    1 RYIVFEIISEDPS-----DPAELSPSDLKKAIREAVKELFGDFGAAAISPSLQVKYFNPKTGIGIIRCRREYYKKVWSAL   75 (107)
T ss_dssp             EEEEEEEEES----------S---HHHHHHHHHHHHHHHCHHHHHHHH--EEE--EEETTTTEEEEEEEGGGHHHHHHHH
T ss_pred             CEEEEEEEEcccc-----ccCcCCHHHHHHHHHHHHHHHcChhhhhhcccccceeeEcCCCCEEEEEEcchhhhHHHHHH
Confidence            9999999998763     23458999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhCCeEEEEEEEeeechHHHHHHHHHhh
Q 036010           88 TMVRSIGNCLVLFNVLDLSGSIRACKNAALKR  119 (155)
Q Consensus        88 ~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i~~  119 (155)
                      |++++++|.||.|+|++||||||+|+|++++|
T Consensus        76 ~~i~~i~~~~~~~~vl~vSGTir~~~k~~i~~  107 (107)
T PF01900_consen   76 TLITSINGRPCSIRVLHVSGTIRSCQKFIIKY  107 (107)
T ss_dssp             HT--EETTEEEEEEEEEEESSHHHHHHHCTC-
T ss_pred             HHHhccCCceEEEEEEEEChhHHHHHHHHhcC
Confidence            99999999999999999999999999999875

This enzyme is essential for tRNA processing generating 5'-termini of mature tRNA molecules []. tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40 [].; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 2CZV_D 2AV5_B.

>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=3.8e-29  Score=183.86  Aligned_cols=106  Identities=24%  Similarity=0.330  Sum_probs=97.7

Q ss_pred             cccCCcEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHHH
Q 036010            3 VGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQK   82 (155)
Q Consensus         3 VR~K~RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~~   82 (155)
                      +|.++|||+|+++++++          ++..++.++||.++.++|||+|.|.+.  ++|.+|++.|+.|||||.|++++.
T Consensus        12 lr~~kRYiaf~vise~~----------i~~~~l~~~I~~s~l~llG~~gta~~~--~~lv~~~~~t~~GIvrc~R~~~~~   79 (124)
T COG1369          12 LRPRKRYIAFEVISEEE----------ITRGELVRLIRRSLLSLLGDVGTAKAN--PRLVKYYFSTGTGIVRCRREYVDL   79 (124)
T ss_pred             cCccceEEEEEEecccc----------CChhHHHHHHHHHHHHHcCcccccccc--eeEEEEeccCCceEEEEechhHHH
Confidence            68999999999998743          789999999999999999999999885  677788777999999999999999


Q ss_pred             HHHHHHhhhhhCCeEEEEEEEeeechHHHHHHHHHhhh
Q 036010           83 VWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKRE  120 (155)
Q Consensus        83 v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i~~~  120 (155)
                      +++||+++++++|.|+.++|++||||||+|++++++-+
T Consensus        80 v~aAL~l~~~~~g~rv~I~~lgvSGTIKka~~~~l~~~  117 (124)
T COG1369          80 VRAALMLAREVNGKRVIIVVLGVSGTIKKAKRKFLRRN  117 (124)
T ss_pred             HHHHHHHHHHhCCceEEEEEeeccccHHHHHHHHhccC
Confidence            99999999999999999999999999999998777644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
2av5_A	120	Ribonuclease P protein component 2; hydrolase; 3.1	7e-29
2czv_C	120	Ribonuclease P protein component 2; RNA binding pr	5e-28
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus furiosus} SCOP: d.58.59.1 Length = 120

 Score =  101 bits (254), Expect = 7e-29
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 12/115 (10%)

Query: 5   FKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYV 64
            K RY+  +V  +              +  + +AI +  L    E G A       +   
Sbjct: 14  DKKRYIAFKVISENQ----------FNKDEIKEAIWNACLRTLGELGTAKA--KPWLIKF 61

Query: 65  NPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKR 119
           +  T+  II++       V  ++T+V  I     +  VL +SG+I+  K   L +
Sbjct: 62  DETTQTGIIRSDRNHVYDVIFSLTLVSDINGNKAIIKVLGVSGTIKRLKRKFLSQ 116

>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1 Length = 120

 Score = 99.4 bits (248), Expect = 5e-28
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 5   FKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYV 64
            KNRY+  E+  D D           T+  V + I  + L    E G A +     +   
Sbjct: 14  DKNRYIAFEIISDGD----------FTKDEVKELIWKSSLEVLGETGTAIV--KPWLIKF 61

Query: 65  NPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKR 119
           +P TK  I+++  E  + +  A+ +V       ++   L +SG+I+  K   L +
Sbjct: 62  DPNTKTGIVRSDREYVEYLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFLAK 116

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 27/136 (19%)

Query: 8   RYMVVEVFLDPD--KELPMDDPVI-LTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYV 64
           R+  V  FL       + +D   + LT   V      ++L+ + +C    L    +V   
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEV-----KSLLLKYLDCRPQDL--PREVLTT 325

Query: 65  NPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKREEVIF 124
           NP   L II  S+ D    W     V          N   L+  I +  N  L+  E   
Sbjct: 326 NPRR-LSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLN-VLEPAE-YR 372

Query: 125 EHYK-LAVGARFSADV 139
           + +  L+V   F    
Sbjct: 373 KMFDRLSV---FPPSA 385

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 23/165 (13%)

Query: 1   IIV----GFKNRYMVVEVFLDPDKELPMDDPVILTQF--NVSKAIRDNILVNFSECGLAS 54
           +++    G    ++ ++V L    +  MD  +    F  N+        ++      L  
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI----FWLNLKNCNSPETVLEM----LQK 204

Query: 55  LLGSFQVKYVNPITKLCIIKASMEDFQKVWSAITMVRSIGNCL-VLFNVLDLSGSIRA-- 111
           LL      + +       IK  +   Q     +   +   NCL VL NV + + +  A  
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFN 263

Query: 112 --CKNAALKREEVIFEHYKLAVGARFSADVTQHMDNCLEKIKILE 154
             CK     R + + +    A     S D   H    L   ++  
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLD---HHSMTLTPDEVKS 305

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
2av5_A	120	Ribonuclease P protein component 2; hydrolase; 3.1	100.0
2czv_C	120	Ribonuclease P protein component 2; RNA binding pr	100.0

>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus furiosus} SCOP: d.58.59.1

Probab=100.00  E-value=5.8e-39  Score=235.32  Aligned_cols=105  Identities=23%  Similarity=0.297  Sum_probs=95.7

Q ss_pred             ccccCCcEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHH
Q 036010            2 IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQ   81 (155)
Q Consensus         2 MVR~K~RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~   81 (155)
                      |||+|||||+|||+++++          +++++|.++|+++++++|||+|+|.+.  ++|+|||+.|++|||||+|++++
T Consensus        11 ~vR~K~RYll~ei~~~~~----------l~~~~l~~~I~~av~~~fGd~G~~~~~--~~v~~f~~~t~~~IiRc~r~~~~   78 (120)
T 2av5_A           11 TLRDKKRYIAFKVISENQ----------FNKDEIKEAIWNACLRTLGELGTAKAK--PWLIKFDETTQTGIIRSDRNHVY   78 (120)
T ss_dssp             ----CEEEEEEEEEESSC----------CCHHHHHHHHHHHHHHHHHHHHHHHHC--CEEEEEETTTTEEEEEEEGGGHH
T ss_pred             cccccceEEEEEEEECCC----------CCHHHHHHHHHHHHHHhCCcccccccC--ccEEEEcCCCCEEEEEeCchhHH
Confidence            999999999999999864          899999999999999999999999875  77899999999999999999999


Q ss_pred             HHHHHHHhhhhhCCeEEEEEEEeeechHHHHHHHHHh
Q 036010           82 KVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALK  118 (155)
Q Consensus        82 ~v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i~  118 (155)
                      .+|+|||++++++|.||.|+|+|||||||+|++++++
T Consensus        79 ~v~aaLtli~~i~~~~~~~~vl~vSGTIr~~~~k~l~  115 (120)
T 2av5_A           79 DVIFSLTLVSDINGNKAIIKVLGVSGTIKRLKRKFLS  115 (120)
T ss_dssp             HHHHHHHTCCEETTEEEEEEEEEEESSHHHHHHHTTT
T ss_pred             HHHHHHHHHhhCCCEEEEEEEeEEchhHHHHHHHHHh
Confidence            9999999999999999999999999999999966554

>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1

Probab=100.00  E-value=7.6e-39  Score=234.76  Aligned_cols=105  Identities=26%  Similarity=0.317  Sum_probs=99.2

Q ss_pred             ccccCCcEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHH
Q 036010            2 IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQ   81 (155)
Q Consensus         2 MVR~K~RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~   81 (155)
                      |||+|||||+|||+++++          +++++|.++|+++++++|||+|+|.+  +++|+|||+.|++|||||+|++++
T Consensus        11 ~vR~K~RYll~ei~~~~~----------l~~~~l~~~I~~av~~~fGd~G~~~~--~~~v~~f~~~t~~~IiRc~r~~~~   78 (120)
T 2czv_C           11 TLRDKNRYIAFEIISDGD----------FTKDEVKELIWKSSLEVLGETGTAIV--KPWLIKFDPNTKTGIVRSDREYVE   78 (120)
T ss_dssp             TTSCCEEEEEEEEECSSC----------CCHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEETTTTEEEEEEEGGGHH
T ss_pred             ccccccEEEEEEEEECCC----------CCHHHHHHHHHHHHHHhcCcchhhcc--CceEEEEcCCCCEEEEEeCchhHH
Confidence            899999999999998764          89999999999999999999999987  489999999999999999999999


Q ss_pred             HHHHHHHhhhhhCCeEEEEEEEeeechHHHHHHHHHh
Q 036010           82 KVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALK  118 (155)
Q Consensus        82 ~v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~~k~~i~  118 (155)
                      .+|+|||++++++|.||.|+|+|||||||+|+++++.
T Consensus        79 ~v~aaLtli~~i~~~~~~~~vl~vSGTIr~~~~k~l~  115 (120)
T 2czv_C           79 YLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFLA  115 (120)
T ss_dssp             HHHHHHHTCCEETTEECEEEEEEEESSHHHHHHHHTG
T ss_pred             HHHHHHHhHhhCCCEEEEEEEeEEChhHHHHHHHHHH
Confidence            9999999999999999999999999999999954443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d2czvc1	118	d.58.59.1 (C:3-120) RNase P protein component 2, R	2e-29
d2av5a1	106	d.58.59.1 (A:15-120) RNase P protein component 2,	8e-29

>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2 {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Rnp2-like
family: Rpp14/Pop5-like
domain: RNase P protein component 2, Rnp2
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  101 bits (254), Expect = 2e-29
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 5   FKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYV 64
            KNRY+  E+  D D           T+  V + I  + L    E G A +     +   
Sbjct: 12  DKNRYIAFEIISDGD----------FTKDEVKELIWKSSLEVLGETGTAIV--KPWLIKF 59

Query: 65  NPITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKR 119
           +P TK  I+++  E  + +  A+ +V       ++   L +SG+I+  K   L +
Sbjct: 60  DPNTKTGIVRSDREYVEYLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFLAK 114

>d2av5a1 d.58.59.1 (A:15-120) RNase P protein component 2, Rnp2 {Pyrococcus furiosus [TaxId: 2261]} Length = 106

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Rnp2-like
family: Rpp14/Pop5-like
domain: RNase P protein component 2, Rnp2
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  100 bits (250), Expect = 8e-29
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 12/114 (10%)

Query: 6   KNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVN 65
           K RY+  +V  +              +  + +AI +  L    E G A       +   +
Sbjct: 1   KKRYIAFKVISENQ----------FNKDEIKEAIWNACLRTLGELGTAKA--KPWLIKFD 48

Query: 66  PITKLCIIKASMEDFQKVWSAITMVRSIGNCLVLFNVLDLSGSIRACKNAALKR 119
             T+  II++       V  ++T+V  I     +  VL +SG+I+  K   L +
Sbjct: 49  ETTQTGIIRSDRNHVYDVIFSLTLVSDINGNKAIIKVLGVSGTIKRLKRKFLSQ 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d2czvc1	118	RNase P protein component 2, Rnp2 {Pyrococcus hori	100.0
d2av5a1	106	RNase P protein component 2, Rnp2 {Pyrococcus furi	100.0

>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Rnp2-like
family: Rpp14/Pop5-like
domain: RNase P protein component 2, Rnp2
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=6.3e-39  Score=232.82  Aligned_cols=108  Identities=25%  Similarity=0.281  Sum_probs=100.7

Q ss_pred             ccccCCcEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHH
Q 036010            2 IVGFKNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQ   81 (155)
Q Consensus         2 MVR~K~RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~   81 (155)
                      ++|+||||++|||+++++          +++++|.++|+++++++|||+|+|.+  +++|+||||.|+.|||||+|++++
T Consensus         9 ~lR~K~RYil~~i~~~~~----------~~~~~l~~~I~~~v~~lfGd~G~~~~--~~~v~y~~~~t~~~IiR~~r~~~~   76 (118)
T d2czvc1           9 TLRDKNRYIAFEIISDGD----------FTKDEVKELIWKSSLEVLGETGTAIV--KPWLIKFDPNTKTGIVRSDREYVE   76 (118)
T ss_dssp             TTSCCEEEEEEEEECSSC----------CCHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEETTTTEEEEEEEGGGHH
T ss_pred             cccccceEEEEEEEeCCC----------CCHHHHHHHHHHHHHHhCCccceeee--ceeEEEEcCCCCEEEEEecchhHH
Confidence            789999999999997653          78999999999999999999999977  599999999999999999999999


Q ss_pred             HHHHHHHhhhhhCCeEEEEEEEeeechHHHHH-HHHHhhhH
Q 036010           82 KVWSAITMVRSIGNCLVLFNVLDLSGSIRACK-NAALKREE  121 (155)
Q Consensus        82 ~v~aaL~li~~i~~~~~~~~Vl~vSGTIr~~~-k~~i~~~~  121 (155)
                      .+||||+++++++|.||.|+|+||||||++|+ |++.+|++
T Consensus        77 ~v~aaL~li~~i~~~~~~i~vl~vSGTIk~~~~k~i~~~~~  117 (118)
T d2czvc1          77 YLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFLAKYGW  117 (118)
T ss_dssp             HHHHHHHTCCEETTEECEEEEEEEESSHHHHHHHHTGGGTC
T ss_pred             HHHHHHHHHhhcCCEeEEEEEEEecHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999996 67766653

>d2av5a1 d.58.59.1 (A:15-120) RNase P protein component 2, Rnp2 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Rnp2-like
family: Rpp14/Pop5-like
domain: RNase P protein component 2, Rnp2
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.5e-37  Score=221.58  Aligned_cols=103  Identities=22%  Similarity=0.295  Sum_probs=96.4

Q ss_pred             CCcEEEEEEEeCCCCCCCCCCCCccCHHHHHHHHHHHHHHhcchhhhhhhcCceeEEEEcCCCcEEEEEeCCccHHHHHH
Q 036010            6 KNRYMVVEVFLDPDKELPMDDPVILTQFNVSKAIRDNILVNFSECGLASLLGSFQVKYVNPITKLCIIKASMEDFQKVWS   85 (155)
Q Consensus         6 K~RYil~ei~~~~~~~~~~~~~~~l~~~~i~~aIr~~v~~lfGd~G~~~~~~~l~V~y~~~~t~~~IIRc~r~~~~~v~a   85 (155)
                      ||||++|||+++++          +++++|.++|+++++++|||+|+|.+  +++|+||||.|++|||||+|++++.+|+
T Consensus         1 K~RYi~~~i~~~~~----------l~~~~l~~~Ir~~v~~lfGd~G~~~~--~l~v~y~~~~t~~~IlR~~r~~~~~v~a   68 (106)
T d2av5a1           1 KKRYIAFKVISENQ----------FNKDEIKEAIWNACLRTLGELGTAKA--KPWLIKFDETTQTGIIRSDRNHVYDVIF   68 (106)
T ss_dssp             CEEEEEEEEEESSC----------CCHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEETTTTEEEEEEEGGGHHHHHH
T ss_pred             CceEEEEEEEECCC----------CCHHHHHHHHHHHHHHhcChhhhccC--CceEEEEeCCCCEEEEEeccHhHHHHHH
Confidence            89999999998754          79999999999999999999999976  6999999999999999999999999999


Q ss_pred             HHHhhhhhCCeEEEEEEEeeechHHHHH-HHHHhhh
Q 036010           86 AITMVRSIGNCLVLFNVLDLSGSIRACK-NAALKRE  120 (155)
Q Consensus        86 aL~li~~i~~~~~~~~Vl~vSGTIr~~~-k~~i~~~  120 (155)
                      |||++++++|.||.|+|+|||||||+|+ |++.+|.
T Consensus        69 aL~li~~i~~~~~~~~vl~vSGTik~~~~k~l~~~~  104 (106)
T d2av5a1          69 SLTLVSDINGNKAIIKVLGVSGTIKRLKRKFLSQFG  104 (106)
T ss_dssp             HHHTCCEETTEEEEEEEEEEESSHHHHHHHTTTTTT
T ss_pred             HHHHHHhcCCEEEEEEEEEeeHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999996 5666654